Publication : - Furuta,Y., Kawai,M., Yahara,K., Takahashi,N., Handa,N., Tsuru,T., Oshima,K., Yoshida,M., Azuma,T., Hattori,M., Uchiyama,I. and Kobayashi,I., "Birth and death of genes linked to chromosomal inversion", Proc. Natl. Acad. Sci. U.S.A. 108 (4), 1501-1506 (2011) PUBMED 21212362 REMARK DOI:10.1073/pnas.1012579108. - Kawai,M., Furuta,Y., Yahara,K., Tsuru,T., Oshima,K., Handa,N., Takahashi,N., Yoshida,M., Azuma,T., Hattori,M., Uchiyama,I. and Kobayashi,I., "Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes", BMC Microbiol. 11, 104 (2011) PUBMED 21575176 REMARK Publication Status: Online-Only. - Kawai,M., Furuta,Y., Yahara,K., Tsuru,T., Oshima,K., Handa,N., Takahashi,N., Yoshida,M., Azuma,T., Hattori,M., Uchiyama,I. and Kobayashi,I., "Direct Submission", Submitted (05-APR-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA. - Kawai,M., Furuta,Y., Yahara,K., Tsuru,T., Takahashi,N., Handa,N., Oshima,K., Hattori,M., Yoshida,M., Azuma,T., Uchiyama,I. and Kobayashi,I., "Direct Submission", Submitted (22-JUL-2010) Contact:Masahira Hattori The University of Tokyo, Center for Omics and Bioinformatics; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561, Japan. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | tnpB | YP_005774523.1 | 1-240 | 240 | + | Not tested | - |
| 2 | cagA | YP_005774524.1 | 355-3879 | 3525 | - | Virulence | - |
| 3 | cagC | YP_005774525.1 | 4525-4872 | 348 | + | Virulence | - |
| 4 | cagD | YP_005774526.1 | 4874-5497 | 624 | + | Virulence | - |
| 5 | cagE | YP_005774527.1 | 5512-8457 | 2946 | + | Virulence | - |
| 6 | cagF | YP_005774528.1 | 8459-9265 | 807 | + | Virulence | - |
| 7 | cagG | YP_005774529.1 | 9320-9751 | 432 | + | Virulence | - |
| 8 | cagH | YP_005774530.1 | 9753-10865 | 1113 | + | Virulence | - |
| 9 | cagI | YP_005774531.1 | 10906-12021 | 1116 | + | Virulence | - |
| 10 | cagL | YP_005774532.1 | 12018-12731 | 714 | + | Virulence | - |
| 11 | cagN | YP_005774533.1 | 12814-13734 | 921 | - | Virulence | - |
| 12 | cagM | YP_005774534.1 | 13749-14879 | 1131 | - | Virulence | - |
| 13 | cagQ | YP_005774535.1 | 16523-16651 | 129 | - | Virulence | - |
| 14 | cagS | YP_005774536.1 | 17707-18306 | 600 | + | Virulence | - |
| 15 | cagT | YP_005774537.1 | 18508-19350 | 843 | - | Virulence | - |
| 16 | cagU | YP_005774538.1 | 19366-20013 | 648 | - | Virulence | - |
| 17 | cagV | YP_005774539.1 | 20288-21046 | 759 | + | Virulence | - |
| 18 | cagW | YP_005774540.1 | 21051-22658 | 1608 | + | Virulence | - |
| 19 | cagX | YP_005774541.1 | 22711-24276 | 1566 | + | Virulence | - |
| 20 | cagY | YP_005774542.1 | 24291-30071 | 5781 | + | Virulence | - |
| 21 | cagZ | YP_005774543.1 | 30208-30807 | 600 | + | Virulence | - |
| 22 | virB11-2 | YP_005774544.1 | 30812-31804 | 993 | + | Virulence | - |
| 23 | cag5 | YP_005774545.1 | 31813-34059 | 2247 | + | Virulence | - |
| 24 | cag4 | YP_005774546.1 | 34366-34875 | 510 | - | Virulence | - |
| 25 | cag3 | YP_005774547.1 | 34885-36330 | 1446 | - | Virulence | - |
| 26 | cag1 | YP_005774548.1 | 36558-36905 | 348 | - | Virulence | - |
|
NC_017374 (Helicobacter pylori 2017): 0.5 Mb NC_017381 (Helicobacter pylori 2018): 0.5 Mb NC_000915 (Helicobacter pylori 26695): 0.5 Mb NC_018939 (Helicobacter pylori 26695): 0.5 Mb NC_017360 (Helicobacter pylori 35A): 1.0 Mb NC_017382 (Helicobacter pylori 51): 0.8 Mb NC_017354 (Helicobacter pylori 52): 0.8 Mb NC_017375 (Helicobacter pylori 83): 0.9 Mb NC_017357 (Helicobacter pylori 908): 0.5 Mb NC_014256 (Helicobacter pylori B8): 0.7 Mb NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb NC_017063 (Helicobacter pylori ELS37): 0.8 Mb NC_017368 (Helicobacter pylori F16): 0.8 Mb NC_017365 (Helicobacter pylori F30): 0.8 Mb NC_017366 (Helicobacter pylori F32): 0.5 Mb NC_017367 (Helicobacter pylori F57): 0.6 Mb NC_011333 (Helicobacter pylori G27): 0.5 Mb NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb NC_017372 (Helicobacter pylori India7): 0.8 Mb NC_000921 (Helicobacter pylori J99): 0.5 Mb NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb NC_020508 (Helicobacter pylori OK113): 0.6 Mb NC_020509 (Helicobacter pylori OK310): 0.8 Mb NC_011498 (Helicobacter pylori P12): 0.5 Mb NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb NC_017378 (Helicobacter pylori Puno120): 0.5 Mb NC_017379 (Helicobacter pylori Puno135): 0.5 Mb NC_018937 (Helicobacter pylori Rif1): 0.5 Mb NC_018938 (Helicobacter pylori Rif2): 0.5 Mb NC_017376 (Helicobacter pylori Santal49): 0.5 Mb NC_017359 (Helicobacter pylori Sat464): 0.8 Mb NC_017741 (Helicobacter pylori Shi112): 0.9 Mb NC_017740 (Helicobacter pylori Shi169): 0.5 Mb NC_017739 (Helicobacter pylori Shi417): 0.5 Mb NC_010698 (Helicobacter pylori Shi470): 0.8 Mb NC_014560 (Helicobacter pylori SJM180): 0.5 Mb NC_021215 (Helicobacter pylori UM032): 0.9 Mb NC_021217 (Helicobacter pylori UM037): 0.8 Mb NC_021218 (Helicobacter pylori UM066): 1.0 Mb NC_021882 (Helicobacter pylori UM298): 1.5 Mb NC_021216 (Helicobacter pylori UM299): 0.4 Mb NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb NC_017926 (Helicobacter pylori XZ274): 0.9 Mb |
