PAI View

Pathogenicity Island: cag PAI

• General information

Name : cag PAI
Host strain : Helicobacter pylori B8
Function : Type IV secretion system
Insertion site : -

• GenBank accessions: 1 records

1) NC_014256_P1 (49734 bp)

Definition :

Publication :

BMC Genomics 11, 335 (2010) PUBMED 20507619 REMARK Publication Status: Online-Only

Submitted (18-JUN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

Submitted (30-NOV-2009) Blom J., Cebitec, Bielefeld University, Universitaetsstr. 25, 33615, GERMANY

Features:

No	Name	GenBank Accn	Position	Size(bp)	Strand	Virulence/Resistance	Description
1	cagB	YP_003728717.1	1-228	228	+	Virulence	-
2	cagC	YP_003728718.1	436-720	285	+	Virulence	-
3	cagD	YP_003728719.1	704-1348	645	+	Virulence	-
4	cagE	YP_003728720.1	1363-4308	2946	+	Virulence	-
5	cagF	YP_003728721.1	4310-5116	807	+	Virulence	-
6	cagG	YP_003728722.1	5171-5599	429	+	Virulence	-
7	cagH	YP_003728723.1	5601-6713	1113	+	Virulence	-
8	cagI	YP_003728724.1	6724-7869	1146	+	Virulence	-
9	cagL	YP_003728725.1	7866-8579	714	+	Virulence	-
10	cagN	YP_003728726.1	8661-9587	927	-	Virulence	-
11	cagM	YP_003728727.1	9596-10726	1131	-	Virulence	-
12	HPB8_707	YP_003728728.1	11030-11146	117	-	Not tested	-
13	HPB8_708	YP_003728729.1	11916-12218	303	-	Not tested	-
14	cagQ	YP_003728730.1	11926-12306	381	+	Virulence	-
15	cagS	YP_003728731.1	12748-13347	600	+	Virulence	-
16	cagT	YP_003728732.1	13544-14386	843	-	Virulence	-
17	cagU	YP_003728733.1	14399-15049	651	-	Virulence	-
18	cagV	YP_003728734.1	15436-16194	759	+	Virulence	-
19	cagW	YP_003728735.1	16199-17797	1599	+	Virulence	-
20	cagX	YP_003728736.1	17850-19418	1569	+	Virulence	-
21	cagY	YP_003728737.1	19433-24898	5466	+	Virulence	-
22	cagZ	YP_003728738.1	25047-25646	600	+	Virulence	-
23	virB11-4	YP_003728739.1	25651-26643	993	+	Virulence	-
24	cag5	YP_003728740.1	26652-28898	2247	+	Virulence	-
25	HPB8_720	YP_003728741.1	28943-29062	120	-	Not tested	-
26	HPB8_721	YP_003728742.1	28982-29257	276	+	Not tested	-
27	cag4	YP_003728743.1	29378-29887	510	-	Virulence	-
28	cag3	YP_003728744.1	29897-31342	1446	-	Virulence	-
29	cag2	YP_003728745.1	31335-32039	705	-	Virulence	-
30	cag1	YP_003728746.1	32103-32450	348	-	Virulence	-
31	HPB8_726	YP_003728747.1	32623-33474	852	+	Not tested	-
32	HPB8_727	YP_003728748.1	33511-33690	180	+	Not tested	-
33	glnA	YP_003728749.1	33704-35149	1446	-	Not tested	-
34	HPB8_729	YP_003728750.1	35287-37350	2064	+	Not tested	-
35	rplI	YP_003728751.1	37413-37862	450	+	Not tested	-
36	hslV	YP_003728752.1	37866-38408	543	+	Not tested	-
37	hslU	YP_003728753.1	38408-39739	1332	+	Not tested	-
38	era	YP_003728754.1	39739-40644	906	+	Not tested	-
39	HPB8_734	YP_003728755.1	40641-41633	993	+	Not tested	-
40	HPB8_735	YP_003728756.1	41885-42493	609	+	Not tested	-
41	HPB8_736	YP_003728757.1	42454-43023	570	+	Not tested	-
42	HPB8_737	YP_003728758.1	43025-43498	474	+	Not tested	-
43	HPB8_738	YP_003728759.1	43498-44043	546	+	Not tested	-
44	HPB8_739	YP_003728760.1	44457-45317	861	+	Not tested	-
45	HPB8_740	YP_003728761.1	45598-45786	189	-	Not tested	-
46	cagA	YP_003728762.1	46180-49734	3555	+	Virulence	-

• PAI-like regions homologous to this PAI (genomes and locations)

NC_008229 (Helicobacter acinonychis Sheeba): 0.8 Mb
NC_017374 (Helicobacter pylori 2017): 0.5 Mb
NC_017381 (Helicobacter pylori 2018): 0.5 Mb
NC_000915 (Helicobacter pylori 26695): 0.5 Mb
NC_018939 (Helicobacter pylori 26695): 0.5 Mb
NC_017360 (Helicobacter pylori 35A): 1.0 Mb
NC_017382 (Helicobacter pylori 51): 0.8 Mb
NC_017354 (Helicobacter pylori 52): 0.8 Mb
NC_017375 (Helicobacter pylori 83): 0.9 Mb
NC_017357 (Helicobacter pylori 908): 0.5 Mb
NC_019560 (Helicobacter pylori Aklavik117): 0.5 Mb
NC_019563 (Helicobacter pylori Aklavik86): 0.8 Mb
NC_012973 (Helicobacter pylori B38): 0.8 Mb
NC_014256 (Helicobacter pylori B8): 0.7 Mb
NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb
NC_017063 (Helicobacter pylori ELS37): 0.8 Mb
NC_017368 (Helicobacter pylori F16): 0.8 Mb
NC_017365 (Helicobacter pylori F30): 0.8 Mb
NC_017366 (Helicobacter pylori F32): 0.5 Mb
NC_017367 (Helicobacter pylori F57): 0.6 Mb
NC_011333 (Helicobacter pylori G27): 0.5 Mb
NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb
NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb
NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb
NC_017372 (Helicobacter pylori India7): 0.8 Mb
NC_000921 (Helicobacter pylori J99): 0.5 Mb
NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb
NC_020508 (Helicobacter pylori OK113): 0.6 Mb
NC_020509 (Helicobacter pylori OK310): 0.8 Mb
NC_011498 (Helicobacter pylori P12): 0.5 Mb
NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb
NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb
NC_017378 (Helicobacter pylori Puno120): 0.5 Mb
NC_017379 (Helicobacter pylori Puno135): 0.5 Mb
NC_018937 (Helicobacter pylori Rif1): 0.5 Mb
NC_018938 (Helicobacter pylori Rif2): 0.5 Mb
NC_017376 (Helicobacter pylori Santal49): 0.5 Mb
NC_017359 (Helicobacter pylori Sat464): 0.8 Mb
NC_017741 (Helicobacter pylori Shi112): 0.9 Mb
NC_017740 (Helicobacter pylori Shi169): 0.5 Mb
NC_017739 (Helicobacter pylori Shi417): 0.5 Mb
NC_010698 (Helicobacter pylori Shi470): 0.8 Mb
NC_014560 (Helicobacter pylori SJM180): 0.5 Mb
NC_022130 (Helicobacter pylori SouthAfrica20): 0.5 Mb
NC_017361 (Helicobacter pylori SouthAfrica7): 0.5 Mb
NC_021215 (Helicobacter pylori UM032): 0.9 Mb
NC_021217 (Helicobacter pylori UM037): 0.8 Mb
NC_021218 (Helicobacter pylori UM066): 1.0 Mb
NC_021882 (Helicobacter pylori UM298): 1.5 Mb
NC_021216 (Helicobacter pylori UM299): 0.4 Mb
NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb
NC_017926 (Helicobacter pylori XZ274): 0.9 Mb