Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag1 | AAR03943.1 | 353-700 | 348 | + | Virulence | - |
| 2 | HP0521B | AAR03944.1 | 731-1468 | 738 | + | Virulence | - |
| 3 | cag3 | AAR03945.1 | 1380-2906 | 1527 | + | Virulence | - |
| 4 | cag4 | AAR03946.1 | 2916-3425 | 510 | + | Virulence | - |
| 5 | cag5 | AAR03947.1 | 3899-6145 | 2247 | - | Virulence | - |
| 6 | HP0525 | AAR03948.1 | 6154-7146 | 993 | - | Virulence | - |
| 7 | cag6 | AAR03949.1 | 7151-7750 | 600 | - | Virulence | - |
| 8 | cag7 | AAR03950.1 | 7887-9863 | 1977 | - | Virulence | - |
Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag7 | AAR03951.1 | 1-1653 | 1653 | - | Virulence | - |
| 2 | cag8 | AAR03952.1 | 1668-3236 | 1569 | - | Virulence | - |
| 3 | cag9 | AAR03953.1 | 3288-4895 | 1608 | - | Virulence | - |
| 4 | cag10 | AAR03954.1 | 4900-5658 | 759 | - | Virulence | - |
| 5 | cag11 | AAR03955.1 | 5941-6591 | 651 | + | Virulence | - |
| 6 | cag12 | AAR03956.1 | 6604-7446 | 843 | + | Virulence | - |
| 7 | cag13 | AAR03957.1 | 7648-8247 | 600 | - | Virulence | - |
| 8 | cag14 | AAR03958.1 | 8680-9060 | 381 | - | Virulence | - |
| 9 | cag15 | AAR03959.1 | 9493-9837 | 345 | - | Virulence | - |
| 10 | cag16 | AAR03960.1 | 10262-11392 | 1131 | + | Virulence | - |
| 11 | cag17 | AAR03961.1 | 11401-12327 | 927 | + | Virulence | - |
| 12 | cag18 | AAR03962.1 | 12409-13122 | 714 | - | Virulence | - |
| 13 | cag19 | AAR03963.1 | 13119-14264 | 1146 | - | Virulence | - |
| 14 | cag20 | AAR03964.1 | 14275-15387 | 1113 | - | Virulence | - |
| 15 | cag21 | AAR03965.1 | 15403-15831 | 429 | - | Virulence | - |
| 16 | cag22 | AAR03966.1 | 15886-16692 | 807 | - | Virulence | - |
| 17 | cag23 | AAR03967.1 | 16694-19645 | 2952 | - | Virulence | - |
| 18 | cag24 | AAR03968.1 | 19654-20277 | 624 | - | Virulence | - |
| 19 | cag25 | AAR03969.1 | 20279-20695 | 417 | - | Virulence | - |
| 20 | cagA | AAR03970.1 | 21457-25005 | 3549 | + | Virulence | - |
| 21 | glr | AAR03971.1 | 25489-26256 | 768 | - | Not tested | - |
|
NC_017374 (Helicobacter pylori 2017): 0.5 Mb NC_017381 (Helicobacter pylori 2018): 0.5 Mb NC_000915 (Helicobacter pylori 26695): 0.5 Mb NC_018939 (Helicobacter pylori 26695): 0.5 Mb NC_017360 (Helicobacter pylori 35A): 1.0 Mb NC_017382 (Helicobacter pylori 51): 0.8 Mb NC_017354 (Helicobacter pylori 52): 0.8 Mb NC_017375 (Helicobacter pylori 83): 0.9 Mb NC_017357 (Helicobacter pylori 908): 0.5 Mb NC_014256 (Helicobacter pylori B8): 0.7 Mb NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb NC_017063 (Helicobacter pylori ELS37): 0.8 Mb NC_017368 (Helicobacter pylori F16): 0.8 Mb NC_017365 (Helicobacter pylori F30): 0.8 Mb NC_017366 (Helicobacter pylori F32): 0.5 Mb NC_017367 (Helicobacter pylori F57): 0.6 Mb NC_011333 (Helicobacter pylori G27): 0.5 Mb NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb NC_017372 (Helicobacter pylori India7): 0.8 Mb NC_000921 (Helicobacter pylori J99): 0.5 Mb NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb NC_020508 (Helicobacter pylori OK113): 0.6 Mb NC_020509 (Helicobacter pylori OK310): 0.8 Mb NC_011498 (Helicobacter pylori P12): 0.5 Mb NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb NC_017378 (Helicobacter pylori Puno120): 0.5 Mb NC_017379 (Helicobacter pylori Puno135): 0.5 Mb NC_018937 (Helicobacter pylori Rif1): 0.5 Mb NC_018938 (Helicobacter pylori Rif2): 0.5 Mb NC_017376 (Helicobacter pylori Santal49): 0.5 Mb NC_017359 (Helicobacter pylori Sat464): 0.8 Mb NC_017741 (Helicobacter pylori Shi112): 0.9 Mb NC_017740 (Helicobacter pylori Shi169): 0.5 Mb NC_017739 (Helicobacter pylori Shi417): 0.5 Mb NC_010698 (Helicobacter pylori Shi470): 0.8 Mb NC_014560 (Helicobacter pylori SJM180): 0.5 Mb NC_021215 (Helicobacter pylori UM032): 0.9 Mb NC_021217 (Helicobacter pylori UM037): 0.8 Mb NC_021218 (Helicobacter pylori UM066): 1.0 Mb NC_021882 (Helicobacter pylori UM298): 1.5 Mb NC_021216 (Helicobacter pylori UM299): 0.4 Mb NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb NC_017926 (Helicobacter pylori XZ274): 0.9 Mb |
