Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag1 | AAR03883.1 | 299-700 | 402 | + | Virulence | - |
| 2 | HP0521B | AAR03884.1 | 731-1447 | 717 | + | Virulence | - |
| 3 | cag3 | AAR03885.1 | 1414-2901 | 1488 | + | Virulence | - |
| 4 | cag4 | AAR03886.1 | 2911-3420 | 510 | + | Virulence | - |
| 5 | cag5 | AAR03887.1 | 3894-6140 | 2247 | - | Virulence | - |
| 6 | HP0525 | AAR03888.1 | 6149-7141 | 993 | - | Virulence | - |
| 7 | cag6 | AAR03889.1 | 7146-7745 | 600 | - | Virulence | - |
| 8 | cag7 | AAR03911.1 | 7882-9858 | 1977 | - | Virulence | - |
Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag7 | AAR03890.1 | 1-2031 | 2031 | - | Virulence | - |
| 2 | cag8 | AAR03891.1 | 2046-3614 | 1569 | - | Virulence | - |
| 3 | cag9 | AAR03892.1 | 3667-5265 | 1599 | - | Virulence | - |
| 4 | cag10 | AAR03893.1 | 5270-6028 | 759 | - | Virulence | - |
| 5 | cag11 | AAR03894.1 | 6414-7064 | 651 | + | Virulence | - |
| 6 | cag12 | AAR03895.1 | 7077-7919 | 843 | + | Virulence | - |
| 7 | cag13 | AAR03896.1 | 8108-8707 | 600 | - | Virulence | - |
| 8 | cag14 | AAR03897.1 | 9148-9528 | 381 | - | Virulence | - |
| 9 | cag15 | AAR03898.1 | 9955-10143 | 189 | - | Virulence | - |
| 10 | cag16 | AAR03899.1 | 10724-11854 | 1131 | + | Virulence | - |
| 11 | cag17 | AAR03900.1 | 11851-12789 | 939 | + | Virulence | - |
| 12 | cag18 | AAR03901.1 | 12871-13584 | 714 | - | Virulence | - |
| 13 | cag19 | AAR03902.1 | 13581-14726 | 1146 | - | Virulence | - |
| 14 | cag20 | AAR03903.1 | 14737-15849 | 1113 | - | Virulence | - |
| 15 | cag21 | AAR03904.1 | 15866-16294 | 429 | - | Virulence | - |
| 16 | cag22 | AAR03905.1 | 16349-17155 | 807 | - | Virulence | - |
| 17 | cag23 | AAR03906.1 | 17157-20108 | 2952 | - | Virulence | - |
| 18 | cag24 | AAR03907.1 | 20117-20740 | 624 | - | Virulence | - |
| 19 | cag25 | AAR03908.1 | 20742-21089 | 348 | - | Virulence | - |
| 20 | cagA | AAR03909.1 | 21914-25459 | 3546 | + | Virulence | - |
| 21 | glr | AAR03910.1 | 25876-26643 | 768 | - | Not tested | - |
|
NC_017374 (Helicobacter pylori 2017): 0.5 Mb NC_017381 (Helicobacter pylori 2018): 0.5 Mb NC_000915 (Helicobacter pylori 26695): 0.5 Mb NC_018939 (Helicobacter pylori 26695): 0.5 Mb NC_017360 (Helicobacter pylori 35A): 1.0 Mb NC_017382 (Helicobacter pylori 51): 0.8 Mb NC_017354 (Helicobacter pylori 52): 0.8 Mb NC_017375 (Helicobacter pylori 83): 0.9 Mb NC_017357 (Helicobacter pylori 908): 0.5 Mb NC_014256 (Helicobacter pylori B8): 0.7 Mb NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb NC_017063 (Helicobacter pylori ELS37): 0.8 Mb NC_017368 (Helicobacter pylori F16): 0.8 Mb NC_017365 (Helicobacter pylori F30): 0.8 Mb NC_017366 (Helicobacter pylori F32): 0.5 Mb NC_017367 (Helicobacter pylori F57): 0.6 Mb NC_011333 (Helicobacter pylori G27): 0.5 Mb NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb NC_017372 (Helicobacter pylori India7): 0.8 Mb NC_000921 (Helicobacter pylori J99): 0.5 Mb NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb NC_020508 (Helicobacter pylori OK113): 0.6 Mb NC_020509 (Helicobacter pylori OK310): 0.8 Mb NC_011498 (Helicobacter pylori P12): 0.5 Mb NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb NC_017378 (Helicobacter pylori Puno120): 0.5 Mb NC_017379 (Helicobacter pylori Puno135): 0.5 Mb NC_018937 (Helicobacter pylori Rif1): 0.5 Mb NC_018938 (Helicobacter pylori Rif2): 0.5 Mb NC_017376 (Helicobacter pylori Santal49): 0.5 Mb NC_017359 (Helicobacter pylori Sat464): 0.8 Mb NC_017741 (Helicobacter pylori Shi112): 0.9 Mb NC_017740 (Helicobacter pylori Shi169): 0.5 Mb NC_017739 (Helicobacter pylori Shi417): 0.5 Mb NC_010698 (Helicobacter pylori Shi470): 0.8 Mb NC_014560 (Helicobacter pylori SJM180): 0.5 Mb NC_021215 (Helicobacter pylori UM032): 0.9 Mb NC_021217 (Helicobacter pylori UM037): 0.8 Mb NC_021218 (Helicobacter pylori UM066): 1.0 Mb NC_021882 (Helicobacter pylori UM298): 1.5 Mb NC_021216 (Helicobacter pylori UM299): 0.4 Mb NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb NC_017926 (Helicobacter pylori XZ274): 0.9 Mb |
