Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag1 | AAR03853.1 | 128-475 | 348 | + | Virulence | - |
| 2 | cag3 | AAR03854.1 | 468-1913 | 1446 | + | Virulence | - |
| 3 | cag4 | AAR03855.1 | 1923-2432 | 510 | + | Virulence | - |
| 4 | tnpA | AAR03856.1 | 2726-3142 | 417 | - | Not tested | - |
| 5 | tnpB | AAR03857.1 | 3179-4507 | 1329 | + | Not tested | - |
| 6 | cag5 | AAR03858.1 | 4877-7123 | 2247 | - | Virulence | - |
| 7 | HP0525 | AAR03859.1 | 7132-8124 | 993 | - | Virulence | - |
| 8 | cag6 | AAR03860.1 | 8129-8728 | 600 | - | Virulence | - |
| 9 | cag7 | AAR03861.1 | 8863-10839 | 1977 | - | Virulence | - |
Publication : - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987. - Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cag7 | AAR03862.1 | 1-2025 | 2025 | - | Virulence | - |
| 2 | cag8 | AAR03863.1 | 2040-3608 | 1569 | - | Virulence | - |
| 3 | cag9 | AAR03864.1 | 3661-5268 | 1608 | - | Virulence | - |
| 4 | cag10 | AAR03865.1 | 5273-6031 | 759 | - | Virulence | - |
| 5 | cag11 | AAR03866.1 | 6409-7059 | 651 | + | Virulence | - |
| 6 | cag12 | AAR03867.1 | 7072-7914 | 843 | + | Virulence | - |
| 7 | cag13 | AAR03868.1 | 8116-8715 | 600 | - | Virulence | - |
| 8 | cag14 | AAR03869.1 | 9153-9533 | 381 | - | Virulence | - |
| 9 | cag15 | AAR03870.1 | 9966-10310 | 345 | - | Virulence | - |
| 10 | cag16 | AAR03871.1 | 10745-11875 | 1131 | + | Virulence | - |
| 11 | cag17 | AAR03872.1 | 11872-12810 | 939 | + | Virulence | - |
| 12 | cag18 | AAR03873.1 | 12892-13605 | 714 | - | Virulence | - |
| 13 | cag19 | AAR03874.1 | 13602-14747 | 1146 | - | Virulence | - |
| 14 | cag20 | AAR03875.1 | 14758-15870 | 1113 | - | Virulence | - |
| 15 | cag21 | AAR03876.1 | 15887-16315 | 429 | - | Virulence | - |
| 16 | cag22 | AAR03877.1 | 16370-17176 | 807 | - | Virulence | - |
| 17 | cag23 | AAR03878.1 | 17178-20129 | 2952 | - | Virulence | - |
| 18 | cag24 | AAR03879.1 | 20138-20761 | 624 | - | Virulence | - |
| 19 | cag25 | AAR03880.1 | 20763-21110 | 348 | - | Virulence | - |
| 20 | cagA | AAR03881.1 | 21859-25455 | 3597 | + | Virulence | - |
| 21 | glr | AAR03882.1 | 25984-26751 | 768 | - | Not tested | - |
|
NC_017374 (Helicobacter pylori 2017): 0.5 Mb NC_017381 (Helicobacter pylori 2018): 0.5 Mb NC_000915 (Helicobacter pylori 26695): 0.5 Mb NC_018939 (Helicobacter pylori 26695): 0.5 Mb NC_017360 (Helicobacter pylori 35A): 1.0 Mb NC_017382 (Helicobacter pylori 51): 0.8 Mb NC_017354 (Helicobacter pylori 52): 0.8 Mb NC_017375 (Helicobacter pylori 83): 0.9 Mb NC_017357 (Helicobacter pylori 908): 0.5 Mb NC_014256 (Helicobacter pylori B8): 0.7 Mb NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb NC_017063 (Helicobacter pylori ELS37): 0.8 Mb NC_017368 (Helicobacter pylori F16): 0.8 Mb NC_017365 (Helicobacter pylori F30): 0.8 Mb NC_017366 (Helicobacter pylori F32): 0.5 Mb NC_017367 (Helicobacter pylori F57): 0.6 Mb NC_011333 (Helicobacter pylori G27): 0.5 Mb NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb NC_017372 (Helicobacter pylori India7): 0.8 Mb NC_000921 (Helicobacter pylori J99): 0.5 Mb NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb NC_020508 (Helicobacter pylori OK113): 0.6 Mb NC_020509 (Helicobacter pylori OK310): 0.8 Mb NC_011498 (Helicobacter pylori P12): 0.5 Mb NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb NC_017378 (Helicobacter pylori Puno120): 0.5 Mb NC_017379 (Helicobacter pylori Puno135): 0.5 Mb NC_018937 (Helicobacter pylori Rif1): 0.5 Mb NC_018938 (Helicobacter pylori Rif2): 0.5 Mb NC_017376 (Helicobacter pylori Santal49): 0.5 Mb NC_017359 (Helicobacter pylori Sat464): 0.8 Mb NC_017741 (Helicobacter pylori Shi112): 0.9 Mb NC_017740 (Helicobacter pylori Shi169): 0.5 Mb NC_017739 (Helicobacter pylori Shi417): 0.5 Mb NC_010698 (Helicobacter pylori Shi470): 0.8 Mb NC_014560 (Helicobacter pylori SJM180): 0.5 Mb NC_021215 (Helicobacter pylori UM032): 0.9 Mb NC_021217 (Helicobacter pylori UM037): 0.8 Mb NC_021218 (Helicobacter pylori UM066): 1.0 Mb NC_021882 (Helicobacter pylori UM298): 1.5 Mb NC_021216 (Helicobacter pylori UM299): 0.4 Mb NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb NC_017926 (Helicobacter pylori XZ274): 0.9 Mb |
