Pathogenicity Island: cag PAI


• General information

Name : cag PAI
Host strain : Helicobacter pylori J166 isolate 31063-2.8/rOut1
Function : Cag2; Cag pathogenicity island proteinY, 3,4,X,W,V,U,T,M,L,I,H,E,C,A virB11
Insertion site : -


• GenBank accessions: 16 records

1) JQ685133 (5853 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein Y (cagY) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





2) JQ685141 (1446 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein 3 (cag3) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





3) JQ685142 (510 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein 4 (cag4) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





4) JQ685143 (1569 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein X (cagX) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





5) JQ685144 (1599 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein W (cagW) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





6) JQ685145 (759 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein V (cagV) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





7) JQ685146 (651 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein U (cagU) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





8) JQ685147 (843 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein T (cagT) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





9) JQ685148 (1131 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein M (cagM) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





10) JQ685149 (714 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein L (cagL) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





11) JQ685150 (1146 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein I (cagI) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





12) JQ685151 (1113 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein H (cagH) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





13) JQ685152 (2952 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein E (cagE) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





14) JQ685153 (348 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein C (cagC) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





15) JQ685154 (3555 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein A (cagA) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





16) JQ685155 (993 bp)

    Definition : Helicobacter pylori strain J166 isolate 31063-2.8/rOut1 cag pathogenicity island protein (virB11) gene, complete cds.

    Publication :
    - Barrozo,R.M., Cooke,C.L., Hansen,L.M., Lam,A.M., Gaddy,J.A., Johnson,E.M., Cariaga,T.A., Suarez,G., Peek,R.M. Jr., Cover,T.L. and Solnick,J.V., "Functional Plasticity in the Type IV Secretion System of Helicobacter pylori", PLoS Pathog. 9 (2), E1003189 (2013) PUBMED 23468628.

    - Hansen,L.M., "Direct Submission", Submitted (17-FEB-2012) Center for Comparative Medicine, University of California, Davis, County Road 98 & Hutchison Drive, Davis, CA 95616, USA.


      





• PAI-like regions homologous to this PAI (genomes and locations)

NC_017374 (Helicobacter pylori 2017): 0.5 Mb
NC_017381 (Helicobacter pylori 2018): 0.5 Mb
NC_000915 (Helicobacter pylori 26695): 0.5 Mb
NC_018939 (Helicobacter pylori 26695): 0.5 Mb
NC_017360 (Helicobacter pylori 35A): 1.0 Mb
NC_017382 (Helicobacter pylori 51): 0.8 Mb
NC_017354 (Helicobacter pylori 52): 0.8 Mb
NC_017375 (Helicobacter pylori 83): 0.9 Mb
NC_017357 (Helicobacter pylori 908): 0.5 Mb
NC_014256 (Helicobacter pylori B8): 0.7 Mb
NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb
NC_017063 (Helicobacter pylori ELS37): 0.8 Mb
NC_017368 (Helicobacter pylori F16): 0.8 Mb
NC_017365 (Helicobacter pylori F30): 0.8 Mb
NC_017366 (Helicobacter pylori F32): 0.5 Mb
NC_017367 (Helicobacter pylori F57): 0.6 Mb
NC_011333 (Helicobacter pylori G27): 0.5 Mb
NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb
NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb
NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb
NC_017372 (Helicobacter pylori India7): 0.8 Mb
NC_000921 (Helicobacter pylori J99): 0.5 Mb
NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb
NC_020508 (Helicobacter pylori OK113): 0.6 Mb
NC_020509 (Helicobacter pylori OK310): 0.8 Mb
NC_011498 (Helicobacter pylori P12): 0.5 Mb
NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb
NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb
NC_017378 (Helicobacter pylori Puno120): 0.5 Mb
NC_017379 (Helicobacter pylori Puno135): 0.5 Mb
NC_018937 (Helicobacter pylori Rif1): 0.5 Mb
NC_018938 (Helicobacter pylori Rif2): 0.5 Mb
NC_017376 (Helicobacter pylori Santal49): 0.5 Mb
NC_017359 (Helicobacter pylori Sat464): 0.8 Mb
NC_017741 (Helicobacter pylori Shi112): 0.9 Mb
NC_017740 (Helicobacter pylori Shi169): 0.5 Mb
NC_017739 (Helicobacter pylori Shi417): 0.5 Mb
NC_010698 (Helicobacter pylori Shi470): 0.8 Mb
NC_014560 (Helicobacter pylori SJM180): 0.5 Mb
NC_021215 (Helicobacter pylori UM032): 0.9 Mb
NC_021217 (Helicobacter pylori UM037): 0.8 Mb
NC_021218 (Helicobacter pylori UM066): 1.0 Mb
NC_021882 (Helicobacter pylori UM298): 1.5 Mb
NC_021216 (Helicobacter pylori UM299): 0.4 Mb
NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb
NC_017926 (Helicobacter pylori XZ274): 0.9 Mb