Publication : - Higashi,H., Tsutsumi,R., Fujita,A., Yamazaki,S., Azuma,T. and Hatakeyama,M., "Virulence of Helicobacter pylori CagA depends on its potential to bind SHP-2 phosphatase", Unpublished. - Yamakawa,A., Yamazaki,S. and Azuma,T., "Direct Submission", Submitted (19-AUG-2002) Takeshi Azuma, Fukui Medical University, Second Department of Internal Medicine; Matsuoka-cho, Yoshida-gun, Fukui 910-1193, Japan (E-mail:azuma@fmsrsa.fukui-med.ac.jp, Tel:81-776-61-8351, Fax:81-776-61-8110). |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cagA | BAC10432.1 | 1-3756 | 3756 | + | Virulence | - |
Publication : - Azuma,T., Yamakawa,A., Yamazaki,S., Ohtani,M., Ito,Y., Muramatsu,A., Suto,H., Yamazaki,Y., Keida,Y., Higashi,H. and Hatakeyama,M., "Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan", J. Clin. Microbiol. 42 (6), 2508-2517 (2004) PUBMED 15184428. - Azuma,T., Yamakawa,A. and Yamazaki,S., "Direct Submission", Submitted (12-SEP-2003) Takeshi Azuma, University of Fukui Faculty of Medical Sciences, General Medicine Second Department of Internal Medicine; Shimoaizuki 23-3, Matsuoka-cho, Yoshida-gun, Fukui 910-1193, Japan (E-mail:azuma@fmsrsa.fukui-med.ac.jp, Tel:8. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | HP0520 | BAD13964.1 | 421-768 | 348 | + | Virulence | - |
| 2 | HP0521 | BAD13965.1 | 876-2711 | 1836 | + | Virulence | - |
| 3 | HP0523 | BAD13966.1 | 2759-3181 | 423 | + | Virulence | - |
| 4 | HP0524 | BAD13967.1 | 3319-5565 | 2247 | - | Virulence | - |
| 5 | HP0525 | BAD13968.1 | 5574-6566 | 993 | - | Virulence | - |
| 6 | HP0526 | BAD13969.1 | 6571-7170 | 600 | - | Virulence | - |
| 7 | HP0527 | BAD13970.1 | 7310-12703 | 5394 | - | Virulence | - |
| 8 | HP0528 | BAD13971.1 | 12718-14286 | 1569 | - | Virulence | - |
| 9 | HP0529 | BAD13972.1 | 14339-15946 | 1608 | - | Virulence | - |
| 10 | HP0530 | BAD13973.1 | 15951-16709 | 759 | - | Virulence | - |
| 11 | HP0531 | BAD13974.1 | 17090-17740 | 651 | + | Virulence | - |
| 12 | HP0532 | BAD13975.1 | 17753-18595 | 843 | + | Virulence | - |
| 13 | HP0533 | BAD13976.1 | 18766-18804 | 39 | - | Virulence | - |
| 14 | HP0534 | BAD13977.1 | 18797-19396 | 600 | - | Virulence | - |
| 15 | HP0535 | BAD13978.1 | 20311-20616 | 306 | + | Virulence | - |
| 16 | HP0536 | BAD13979.1 | 21411-21734 | 324 | - | Virulence | - |
| 17 | HP0537 | BAD13980.1 | 22174-23304 | 1131 | + | Virulence | - |
| 18 | HP0538 | BAD13981.1 | 23319-24239 | 921 | + | Virulence | - |
| 19 | HP0539 | BAD13982.1 | 24321-25034 | 714 | - | Virulence | - |
| 20 | HP0540 | BAD13983.1 | 25031-26176 | 1146 | - | Virulence | - |
| 21 | HP0541 | BAD13984.1 | 26187-27299 | 1113 | - | Virulence | - |
| 22 | HP0542 | BAD13985.1 | 27315-27743 | 429 | - | Virulence | - |
| 23 | HP0543 | BAD13986.1 | 27798-28604 | 807 | - | Virulence | - |
| 24 | HP0544 | BAD13987.1 | 28606-31557 | 2952 | - | Virulence | - |
| 25 | HP0545 | BAD13988.1 | 31567-32190 | 624 | - | Virulence | - |
| 26 | HP0546 | BAD13989.1 | 32192-32536 | 345 | - | Virulence | - |
| 27 | HP0547 | BAD13990.1 | 33299-37054 | 3756 | + | Virulence | - |
| 28 | HP0549 | BAD13991.1 | 37542-38309 | 768 | - | Not tested | - |
Publication : - Yamazaki,S., Yamakawa,A., Okuda,T., Ohtani,M., Suto,H., Ito,Y., Yamazaki,Y., Keida,Y., Higashi,H., Hatakeyama,M. and Azuma,T., "Distinct diversity of vacA, cagA, and cagE genes of Helicobacter pylori associated with peptic ulcer in Japan", J. Clin. Microbiol. 43 (8), 3906-3916 (2005) PUBMED 16081930. - Yamazaki,S., Yamakawa,A. and Azuma,T., "Direct Submission", Submitted (24-SEP-2004) Takeshi Azuma, University of Fukui, Faculty of Medical Sciences, Second Department of Internal Medicine; Matsuoka-cho, Yoshida-gun, Fukui 910-1193, Japan (E-mail:azuma@fmsrsa.fukui-med.ac.jp, Tel:81-776-61-8351, Fax:81-776-61-8110). |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | cagE | BAD51910.1 | 1-2952 | 2952 | + | Virulence | - |
|
NC_017374 (Helicobacter pylori 2017): 0.5 Mb NC_017381 (Helicobacter pylori 2018): 0.5 Mb NC_000915 (Helicobacter pylori 26695): 0.5 Mb NC_018939 (Helicobacter pylori 26695): 0.5 Mb NC_017360 (Helicobacter pylori 35A): 1.0 Mb NC_017382 (Helicobacter pylori 51): 0.8 Mb NC_017354 (Helicobacter pylori 52): 0.8 Mb NC_017375 (Helicobacter pylori 83): 0.9 Mb NC_017357 (Helicobacter pylori 908): 0.5 Mb NC_014256 (Helicobacter pylori B8): 0.7 Mb NC_017358 (Helicobacter pylori Cuz20): 0.6 Mb NC_017063 (Helicobacter pylori ELS37): 0.8 Mb NC_017368 (Helicobacter pylori F16): 0.8 Mb NC_017365 (Helicobacter pylori F30): 0.8 Mb NC_017366 (Helicobacter pylori F32): 0.5 Mb NC_017367 (Helicobacter pylori F57): 0.6 Mb NC_011333 (Helicobacter pylori G27): 0.5 Mb NC_017371 (Helicobacter pylori Gambia94/24): 0.5 Mb NC_008086 (Helicobacter pylori HPAG1): 0.5 Mb NC_017733 (Helicobacter pylori HUP-B14): 0.8 Mb NC_017372 (Helicobacter pylori India7): 0.8 Mb NC_000921 (Helicobacter pylori J99): 0.5 Mb NC_017362 (Helicobacter pylori Lithuania75): 0.5 Mb NC_020508 (Helicobacter pylori OK113): 0.6 Mb NC_020509 (Helicobacter pylori OK310): 0.8 Mb NC_011498 (Helicobacter pylori P12): 0.5 Mb NC_017742 (Helicobacter pylori PeCan18): 0.5 Mb NC_014555 (Helicobacter pylori PeCan4): 0.5 Mb NC_017378 (Helicobacter pylori Puno120): 0.5 Mb NC_017379 (Helicobacter pylori Puno135): 0.5 Mb NC_018937 (Helicobacter pylori Rif1): 0.5 Mb NC_018938 (Helicobacter pylori Rif2): 0.5 Mb NC_017376 (Helicobacter pylori Santal49): 0.5 Mb NC_017359 (Helicobacter pylori Sat464): 0.8 Mb NC_017741 (Helicobacter pylori Shi112): 0.9 Mb NC_017740 (Helicobacter pylori Shi169): 0.5 Mb NC_017739 (Helicobacter pylori Shi417): 0.5 Mb NC_010698 (Helicobacter pylori Shi470): 0.8 Mb NC_014560 (Helicobacter pylori SJM180): 0.5 Mb NC_021215 (Helicobacter pylori UM032): 0.9 Mb NC_021217 (Helicobacter pylori UM037): 0.8 Mb NC_021218 (Helicobacter pylori UM066): 1.0 Mb NC_021882 (Helicobacter pylori UM298): 1.5 Mb NC_021216 (Helicobacter pylori UM299): 0.4 Mb NC_017355 (Helicobacter pylori v225d): 0.5, 0.5 Mb NC_017926 (Helicobacter pylori XZ274): 0.9 Mb |
