Publication : - Kariyawasam,S., Johnson,T.J. and Nolan,L.K., "The pap Operon of Avian Pathogenic Escherichia coli Strain O1:K1 Is Located on a Novel Pathogenicity Island", Infect. Immun. 74 (1), 744-749 (2006) PUBMED 16369033. - Kariyawasam,S., Johnson,T.J. and Nolan,L.K., "Direct Submission", Submitted (15-JUN-2005) Veterinary Microbiology and Preventive Medicine, Iowa State University, 1802 Elwood Drive, VMRI 2, Ames, IA 50011, USA. |
| No | Name | GenBank Accn | Position | Size(bp) | Strand | Virulence/Resistance | Description |
| 1 | ORF_1 | AAZ04412.1 | 274-1536 | 1263 | + | Not tested | - |
| 2 | ORF_2 | AAZ04413.1 | 1976-5503 | 3528 | + | Not tested | - |
| 3 | ORF_3 | AAZ04414.1 | 5612-7111 | 1500 | - | Not tested | - |
| 4 | tia | AAZ04415.1 | 7286-8041 | 756 | - | Virulence | - |
| 5 | ORF_5 | AAZ04416.1 | 8142-8891 | 750 | - | Not tested | - |
| 6 | ORF_6 | AAZ04417.1 | 8903-10444 | 1542 | - | Not tested | - |
| 7 | papG | AAZ04418.1 | 10978-11988 | 1011 | - | Virulence | - |
| 8 | papF | AAZ04419.1 | 12032-12562 | 531 | - | Virulence | - |
| 9 | papE | AAZ04420.1 | 12607-13128 | 522 | - | Virulence | - |
| 10 | papK | AAZ04421.1 | 13155-13691 | 537 | - | Virulence | - |
| 11 | papJ | AAZ04422.1 | 13701-14282 | 582 | - | Virulence | - |
| 12 | papD | AAZ04423.1 | 14319-15053 | 735 | - | Virulence | - |
| 13 | papC | AAZ04424.1 | 15124-17643 | 2520 | - | Virulence | - |
| 14 | papH | AAZ04425.1 | 17693-18280 | 588 | - | Virulence | - |
| 15 | papA | AAZ04426.1 | 18343-18912 | 570 | - | Virulence | - |
| 16 | papB | AAZ04473.1 | 19098-19412 | 315 | - | Virulence | - |
| 17 | papI | AAZ04427.1 | 19716-20021 | 306 | - | Virulence | - |
| 18 | ORF_18 | AAZ04428.1 | 20321-20647 | 327 | + | Not tested | - |
| 19 | ORF_19 | AAZ04429.1 | 20725-21300 | 576 | - | Not tested | - |
| 20 | ORF_20 | AAZ04430.1 | 21558-22124 | 567 | - | Not tested | - |
| 21 | insC | AAZ04431.1 | 22550-22840 | 291 | + | Not tested | - |
| 22 | insD | AAZ04432.1 | 22798-23511 | 714 | + | Not tested | - |
| 23 | ORF_23 | AAZ04433.1 | 23713-24090 | 378 | - | Not tested | - |
| 24 | pgtP | AAZ04434.1 | 24121-25485 | 1365 | - | Not tested | - |
| 25 | pgtC | AAZ04435.1 | 25830-27101 | 1272 | + | Not tested | - |
| 26 | pgtB | AAZ04436.1 | 27098-29107 | 2010 | + | Not tested | - |
| 27 | pgtA | AAZ04437.1 | 29088-30344 | 1257 | + | Not tested | - |
| 28 | ORF_28 | AAZ04438.1 | 30937-31260 | 324 | - | Not tested | - |
| 29 | ORF_29 | AAZ04439.1 | 31325-31969 | 645 | - | Not tested | - |
| 30 | ORF_30 | AAZ04440.1 | 32420-32983 | 564 | - | Not tested | - |
| 31 | ORF_31 | AAZ04441.1 | 32968-34200 | 1233 | - | Not tested | - |
| 32 | ORF_32 | AAZ04442.1 | 34336-34980 | 645 | - | Not tested | - |
| 33 | ORF_33 | AAZ04443.1 | 35174-36622 | 1449 | - | Not tested | - |
| 34 | ORF_34 | AAZ04444.1 | 36793-37680 | 888 | - | Not tested | - |
| 35 | ORF_36 | AAZ04445.1 | 37680-38006 | 327 | - | Not tested | - |
| 36 | ORF_37 | AAZ04446.1 | 38695-39060 | 366 | + | Not tested | - |
| 37 | ireA | AAZ04447.1 | 39400-41448 | 2049 | - | Virulence | - |
| 38 | ORF_39 | AAZ04448.1 | 41916-42134 | 219 | - | Not tested | - |
| 39 | ORF_40 | AAZ04449.1 | 42222-42962 | 741 | - | Not tested | - |
| 40 | ORF_41 | AAZ04450.1 | 44567-45442 | 876 | + | Not tested | - |
| 41 | ORF_42 | AAZ04451.1 | 45439-46389 | 951 | - | Not tested | - |
| 42 | ORF_43 | AAZ04452.1 | 46495-47379 | 885 | + | Not tested | - |
| 43 | yfjR | AAZ04453.1 | 47582-48262 | 681 | + | Not tested | - |
| 44 | ORF_45 | AAZ04454.1 | 48305-49087 | 783 | + | Not tested | - |
| 45 | ORF_46 | AAZ04455.1 | 49093-49326 | 234 | + | Not tested | - |
| 46 | ORF_47 | AAZ04456.1 | 49416-50234 | 819 | + | Not tested | - |
| 47 | ORF_48 | AAZ04457.1 | 50325-50810 | 486 | + | Not tested | - |
| 48 | yeeS | AAZ04458.1 | 50825-51301 | 477 | + | Not tested | - |
| 49 | yeeT | AAZ04459.1 | 51370-51591 | 222 | + | Not tested | - |
| 50 | yeeU | AAZ04460.1 | 51610-52047 | 438 | + | Not tested | - |
| 51 | yeeV | AAZ04461.1 | 51989-52471 | 483 | + | Not tested | - |
| 52 | yeeW | AAZ04462.1 | 52468-52956 | 489 | + | Not tested | - |
| 53 | ORF_49 | AAZ04463.1 | 53250-54095 | 846 | + | Not tested | - |
| 54 | ORF_55 | AAZ04464.1 | 54166-55701 | 1536 | + | Not tested | - |
| 55 | ORF_56 | AAZ04465.1 | 56840-57001 | 162 | - | Not tested | - |
| 56 | kpsF | AAZ04466.1 | 57078-58061 | 984 | + | Virulence | - |
| 57 | kpsE | AAZ04467.1 | 58133-59281 | 1149 | + | Virulence | - |
| 58 | kpsD | AAZ04468.1 | 59305-60981 | 1677 | + | Virulence | - |
| 59 | kpsU | AAZ04469.1 | 60991-61731 | 741 | + | Virulence | - |
| 60 | kpsC | AAZ04470.1 | 61728-63755 | 2028 | + | Virulence | - |
| 61 | kpsS | AAZ04471.1 | 63790-64995 | 1206 | + | Virulence | - |
| 62 | ORF_63 | AAZ04472.1 | 65145-66374 | 1230 | - | Not tested | - |
|
NC_013716 (Citrobacter rodentium ICC168): 5.2 Mb NC_009778 (Cronobacter sakazakii ATCC BAA-894): 3.3 Mb NC_017933 (Cronobacter sakazakii ES15): 3.6 Mb NC_020260 (Cronobacter sakazakii Sp291): 0.9 Mb NC_013282 (Cronobacter turicensis z3032): 0.7 Mb NC_020796 (Edwardsiella tarda C07-087): 2.4 Mb NC_013508 (Edwardsiella tarda EIB202): 2.4 Mb NC_017309 (Edwardsiella tarda FL6-60): 2.8 Mb NC_020181 (Enterobacter aerogenes EA1509E): 5.1 Mb NC_015663 (Enterobacter aerogenes KCTC 2190): 0.6 Mb NC_014618 (Enterobacter cloacae SCF1): 4.0 Mb NC_021500 (Enterobacter sp. R4-368): 3.6 Mb NC_017626 (Escherichia coli 042): 3.4, 3.4, 4.8, 4.9, 5.1 Mb NC_013364 (Escherichia coli 11128): 0.3, 2.6 Mb NC_013361 (Escherichia coli 11368): 3.3, 5.5 Mb NC_013353 (Escherichia coli 12009): 2.5, 3.6, 5.1, 5.3 Mb NC_018650 (Escherichia coli 2009EL-2050): 0.8, 4.7 Mb NC_018661 (Escherichia coli 2009EL-2071): 0.8, 4.8 Mb NC_018658 (Escherichia coli 2011C-3493): 0.8, 4.7 Mb NC_008253 (Escherichia coli 536): 0.3, 2.1, 3.1, 3.9, 4.7 Mb NC_011748 (Escherichia coli 55989): 3.4, 3.4, 4.7, 5.0 Mb NC_017631 (Escherichia coli ABU 83972): 0.2, 1.3, 2.3, 3.3, 3.4, 4.2, 4.9, 5.0 Mb NC_008563 (Escherichia coli APEC O1): 3.3, 4.7 Mb NC_010468 (Escherichia coli ATCC 8739): 3.8 Mb NC_012892 (Escherichia coli BL21(DE3)): 2.9 Mb NC_012971 (Escherichia coli BL21(DE3)): 2.9 Mb NC_013941 (Escherichia coli CB9615): 3.7 Mb NC_017646 (Escherichia coli CE10): 2.3, 3.5, 4.3, 5.0 Mb NC_004431 (Escherichia coli CFT073): 0.2, 1.2, 2.3, 3.4, 4.3, 4.9 Mb NC_017652 (Escherichia coli clone D i14): 0.3, 1.1, 2.3, 3.3, 4.9 Mb NC_017651 (Escherichia coli clone D i2): 0.3, 1.1, 2.3, 3.3, 4.9 Mb NC_011601 (Escherichia coli E2348/69): 1.2 Mb NC_009801 (Escherichia coli E24377A): 3.3, 3.4, 4.8 Mb NC_011745 (Escherichia coli ED1a): 2.3, 3.4, 3.5, 4.8, 4.9, 5.1 Mb NC_017633 (Escherichia coli ETEC H10407): 3.4, 4.2, 4.2, 4.8 Mb NC_011750 (Escherichia coli IAI39): 1.1, 3.5, 4.4, 4.4, 4.8 Mb NC_017628 (Escherichia coli IHE3034): 1.1, 2.3, 3.4 Mb NC_012759 (Escherichia coli K-12): 2.7 Mb NC_000913 (Escherichia coli K12): 2.1 Mb NC_016902 (Escherichia coli KO11FL): 4.2 Mb NC_017660 (Escherichia coli KO11FL): 4.9 Mb NC_011993 (Escherichia coli LF82): 3.1 Mb NC_022364 (Escherichia coli LY180): 4.7 Mb NC_017644 (Escherichia coli NA114): 3.1, 4.7, 4.8 Mb NC_017634 (Escherichia coli NRG 857C): 3.1 Mb NC_022370 (Escherichia coli PMV-1): 1.1, 2.2, 3.3 Mb NC_012967 (Escherichia coli REL606): 3.0 Mb NC_017656 (Escherichia coli RM12579): 2.5 Mb NC_011742 (Escherichia coli S88): 3.2, 4.6, 4.8 Mb NC_002695 (Escherichia coli Sakai): 2.7 Mb NC_013654 (Escherichia coli SE15): 2.0, 3.0, 4.6 Mb NC_010498 (Escherichia coli SMS-3-5): 1.1, 2.3, 3.3, 4.9 Mb NC_017632 (Escherichia coli UM146): 0.3, 1.4, 2.5, 4.5, 4.5 Mb NC_011751 (Escherichia coli UMN026): 3.4, 5.0 Mb NC_017641 (Escherichia coli UMNK88): 3.6 Mb NC_007946 (Escherichia coli UTI89): 1.1, 2.2, 3.3, 4.8, 4.8 Mb NC_017635 (Escherichia coli W): 4.8 Mb NC_017664 (Escherichia coli W): 4.8 Mb NC_017906 (Escherichia coli Xuzhou21): 2.6 Mb NC_016612 (Klebsiella oxytoca KCTC 1686): 0.5 Mb NC_009565 (Mycobacterium tuberculosis F11): 2.0 Mb NC_012917 (Pectobacterium carotovorum PC1): 3.3 Mb NC_018525 (Pectobacterium carotovorum PCC21): 3.7 Mb NC_013421 (Pectobacterium wasabiae WPP163): 1.5 Mb NC_017731 (Providencia stuartii MRSN 2154): 2.8 Mb NC_017047 (Rahnella aquatilis HX2): 1.4 Mb NC_015061 (Rahnella sp. Y9602): 1.5 Mb NC_015761 (Salmonella bongori NCTC 12419): 0.3 Mb NC_011274 (Salmonella enterica 287/91): 0.3 Mb NC_022241 (Salmonella enterica 3114): 0.3 Mb NC_022221 (Salmonella enterica CDC1983-67): 2.7 Mb NC_021844 (Salmonella enterica CFSAN000189): 0.9, 3.7 Mb NC_021814 (Salmonella enterica CFSAN001921): 0.7 Mb NC_021818 (Salmonella enterica CFSAN002050): 0.9 Mb NC_016831 (Salmonella enterica RKS5078): 2.7 Mb NC_021984 (Salmonella enterica S06004): 2.7 Mb NC_010102 (Salmonella enterica SGSC4150; SPB7): 2.8 Mb NC_011083 (Salmonella enterica SL476): 4.6 Mb NC_021902 (Salmonella enterica USMARC-S3124.1): 0.7 Mb NC_021659 (Serratia plymuthica S13): 4.1 Mb NC_010658 (Shigella boydii CDC 3083-94): 1.0 Mb NC_007606 (Shigella dysenteriae Sd197): 0.9, 4.3 Mb NC_017328 (Shigella flexneri 2002017): 3.1, 3.8 Mb NC_004741 (Shigella flexneri 2457T): 3.0, 3.9 Mb NC_004337 (Shigella flexneri 301): 3.1 Mb NC_008258 (Shigella flexneri 8401): 3.9 Mb NC_007384 (Shigella sonnei Ss046): 3.8 Mb NC_009708 (Yersinia pseudotuberculosis IP 31758): 0.9 Mb NC_006155 (Yersinia pseudotuberculosis IP 32953): 4.6 Mb NC_010634 (Yersinia pseudotuberculosis PB1/+): 1.3, 4.6 Mb NC_010465 (Yersinia pseudotuberculosis YPIII): 3.4 Mb |
