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PAthogenisity Island DataBase (PAI DB)

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Homologs of pilQ2 gene of AY273869

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pilQ2
( YP_792924.1 )

type IV B pilus protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

0.0

100

2) G655_23495
( YP_007711537.1 )

type IV B pilus protein

NC_020912
(Pseudomonas aeruginosa B136-33)

0.0

3) PADK2_23810
( YP_006484727.1 )

hypothetical protein

NC_018080
(Pseudomonas aeruginosa DK2)

0.0

4) PSPA7_4474
( YP_001349824.1 )

hypothetical protein

NC_009656
(Pseudomonas aeruginosa PA7)

0.0

5) M062_05175
( YP_008131484.1 )

type IV B pilus protein

NC_021577
(Pseudomonas aeruginosa RP73)

0.0

6) pilQ
( YP_261761.1 )

pilus assembly protein PilQ

NC_004129
(Pseudomonas protegens Pf-5)

7e-109

7) Psyr_1514
( YP_234602.1 )

type II secretion system protein E

NC_007005
(Pseudomonas syringae B728a)

9e-107

8) plu1741
( NP_929022.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

4e-94

9) YSA_p00211
( YP_006870698.1 )

type IV B pilus protein

NC_018746
(Pseudomonas putida ND6)

2e-91

10) pilQ
( YP_003041610.1 )

type ii secretion system protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-88

11) pilQ2
( YP_008076160.1 )

type IV pilus retraction ATPase PilQ2

NC_021361
(Pseudomonas fluorescens A506)

2e-87

12) Bpro_5448
( YP_552200.1 )

type II secretion system protein E

NC_007950
(Polaromonas sp. JS666)

5e-66

13) Bpro_5243
( YP_552002.1 )

type II secretion system protein E

NC_007949
(Polaromonas sp. JS666)

6e-65

• Sequence Alignments

1) pilQ2 in NC_008463


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  871 bits (3299),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/526 (100%), Positives = 526/526 (100%), Gaps = 0/526 (0%)

Query  1    MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI  60
            MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI
Sbjct  1    MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI  60

Query  61   DRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS  120
            DRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS
Sbjct  61   DRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS  120

Query  121  DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD  180
            DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD
Sbjct  121  DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD  180

Query  181  ARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM  240
            ARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM
Sbjct  181  ARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM  240

Query  241  RMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV  300
            RMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV
Sbjct  241  RMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV  300

Query  301  YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS  360
            YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS
Sbjct  301  YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS  360

Query  361  AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVR  420
            AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVR
Sbjct  361  AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVR  420

Query  421  RLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ  480
            RLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ
Sbjct  421  RLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ  480

Query  481  GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526
            GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC
Sbjct  481  GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526

2) G655_23495 in NC_020912


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  860 bits (3257),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/526 (99%), Positives = 524/526 (99%), Gaps = 0/526 (0%)

Query  1    MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI  60
            MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI
Sbjct  1    MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI  60

Query  61   DRLERRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS  120
            DRL+RRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS
Sbjct  61   DRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRAS  120

Query  121  DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD  180
            DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD
Sbjct  121  DVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQD  180

Query  181  ARMSQAFVEKLNLFGARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM  240
            ARMSQ+FVEKLNLF+ARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM
Sbjct  181  ARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMM  240

Query  241  RMPYGINILSGPTGSGKSMTLKVTMEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV  300
            RMPYGINILSGPTGSGKSMTLKVT+EGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV
Sbjct  241  RMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLV  300

Query  301  YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS  360
            YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS
Sbjct  301  YDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS  360

Query  361  AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLALDLVERVQ  420
            AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLA DLVERV+
Sbjct  361  AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVR  420

Query  421  RLTDVSQVYVKGPGCQACRASGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ  480
            RLTDVSQV VKGPGCQACR+SGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ
Sbjct  421  RLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQ  480

Query  481  GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526
            GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC
Sbjct  481  GITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526

3) PADK2_23810 in NC_018080


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  841 bits (3185),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 506/513 (99%), Positives = 511/513 (99%), Gaps = 0/513 (0%)

Query  1    MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  60
            MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN
Sbjct  14   MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  73

Query  61   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  120
            LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS
Sbjct  74   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  133

Query  121  KIRFRVDGLLKTVEQYRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQAFVEKLNL  180
            KIRFRVDGLLKTVEQ+RSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQ+FVEKLNL
Sbjct  134  KIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNL  193

Query  181  FGARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  240
            F+ARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT
Sbjct  194  FSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  253

Query  241  GSGKSMTLKVTMEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW  300
            GSGKSMTLKVT+EGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW
Sbjct  254  GSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW  313

Query  301  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  360
            AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV
Sbjct  314  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  373

Query  361  DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLALDLVERVQRLTDVSQVYVKGP  420
            DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLA DLVERV+RLTDVSQV VKGP
Sbjct  374  DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGP  433

Query  421  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  480
            GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN
Sbjct  434  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  493

Query  481  EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  513
            EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC
Sbjct  494  EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526

4) PSPA7_4474 in NC_009656


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  840 bits (3180),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 505/513 (99%), Positives = 511/513 (99%), Gaps = 0/513 (0%)

Query  1    MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  60
            MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN
Sbjct  14   MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  73

Query  61   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  120
            LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS
Sbjct  74   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  133

Query  121  KIRFRVDGLLKTVEQYRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQAFVEKLNL  180
            KIRFRVDGLLKTVEQ+RSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQ+FVEKLNL
Sbjct  134  KIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNL  193

Query  181  FGARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  240
            F+ARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT
Sbjct  194  FSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  253

Query  241  GSGKSMTLKVTMEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW  300
            GSGKSMTLKVT+EGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW
Sbjct  254  GSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW  313

Query  301  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  360
            AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV
Sbjct  314  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  373

Query  361  DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLALDLVERVQRLTDVSQVYVKGP  420
            DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLA DLVERV+RLTDVSQV VKGP
Sbjct  374  DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGP  433

Query  421  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  480
            GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN
Sbjct  434  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  493

Query  481  EGMFDPQIVEDFIGPLDFDEHLLDDSFYSQEAC  513
            EGMFDPQ+VEDFIGPLDFDEHLLDDSFYSQEAC
Sbjct  494  EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526

5) M062_05175 in NC_021577


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  839 bits (3176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/513 (99%), Positives = 511/513 (99%), Gaps = 0/513 (0%)

Query  1    MVTQLLTADGGEWEVSKYLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  60
            MVTQLLTADGGEWEVSK LQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN
Sbjct  14   MVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLN  73

Query  61   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  120
            LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS
Sbjct  74   LTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGS  133

Query  121  KIRFRVDGLLKTVEQYRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQAFVEKLNL  180
            KIRFRVDGLLKTVEQ+RSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQ+FVEKLNL
Sbjct  134  KIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNL  193

Query  181  FGARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  240
            F+ARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT
Sbjct  194  FSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPT  253

Query  241  GSGKSMTLKVTMEGLDKLHGGSKHILTIEDPPEYHIRGEGINQTPLVYDATDPDAERQAW  300
            GSGKSMTLKVT+EGLDKLHGGSKHILTIEDPPEY+IRGEGINQTPLVYDATDPDAERQAW
Sbjct  254  GSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAW  313

Query  301  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  360
            AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV
Sbjct  314  AAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGV  373

Query  361  DSGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVQRLTDVSQVYVKGP  420
            D+GLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERV+RLTDVSQV VKGP
Sbjct  374  DPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGP  433

Query  421  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  480
            GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN
Sbjct  434  GCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRIN  493

Query  481  EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  513
            EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC
Sbjct  494  EGMFDPQMVEDFIGPLDFDEHLLDDSFYSQEAC  526

6) pilQ in NC_004129


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  387 bits (1455),  Expect = 7e-109, Method: Compositional matrix adjust.
 Identities = 239/522 (46%), Positives = 360/522 (69%), Gaps = 21/522 (4%)

Query  1    MTILETPPLASSLSTTPQFAGAVLTAQGERFELKPDQRQICALTEDGTLHISAQHQADPH  60
            MT L+ ++LA      P     +LTA+G   E+  + ++I AL+ DGTL +S  HQ D H
Sbjct  1    MTNLQIAALAQ-----PSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIH  55

Query  61   VMAFMDKLEHEQFEYVIKLCSMTDIRSIYQA---SSQIPGSDQIDTVRQAHALRILADAH  117
            V++F+D+L++  F Y ++L  +  I+ +Y+A    + + + +Q  T  Q + ++I+  A 
Sbjct  56   VLSFIDRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKAT  115

Query  118  KRGASDIHIVVGYEIT--KIFYRIHGLLWEAGQEKSGVGLELCSALYNSMCDVTKDHFQP  175
               ASD+H+VV+   T  KI +R++GLL    Q +S    ELC+++Y+SMCDV+   F+P
Sbjct  116  ELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKP  175

Query  176  TIPQDARVARSFVETLGLFGARLSTRPLVDGPLMVMRLLYDDESKASLEDLGFLPEQIAQ  235
             + QDAR++++FVE L LF+AR++TRP  +G LM++RLLYDD +  SLE+LG+LPEQ A 
Sbjct  176  QLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNAL  235

Query  236  YARLRSLPYGVNLITGPTGSGKSKSLQINLNLLFEETEGTRHILTIEDPPEYPLKA---N  292
            + R+  +PYG+N+++GPTGSGKS +L++ L+ L     G++HILTIEDPPEY +++   N
Sbjct  236  FDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGIN  295

Query  293  QSPL--------GPGESWQAGIKSSVRLDPDVLMYGEIRDLESAQAAYSGGMTGHLVWGT  344
            Q+PL        +  ++W AGI +++RLDPD +M GE+RDL +A AA+ G+MTGH +W+T
Sbjct  296  QTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWST  355

Query  345  LHTNNAVASLQRLIDMGVPDYLVTDPALTTGLINQSLLPVLCQSCCVPLRDHLDSVSQGL  404
            LHTN+A++ +QRL D+GV   L+ DPAL TGLINQSLLP LC  C V ++DH D ++ +L
Sbjct  356  LHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDL  415

Query  405  RERLEQLQIIDQVNLVGPGCPHCKKLGVAGRTVVAEILMTDLLFMKVFSELGASAARRHW  464
             ER+ +L  + QV++ GPGC  C+  GV GR++VAE+++  L FM+VF+  G++ AR  W
Sbjct  416  VERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYW  475

Query  465  VKEMGGITKIEHAIRKIKAGTVDPRHAETLIGPLDFDRQLVE  506
            VK M GITK  HAIR+I+ G  DP+  E +IGPLDFD +L++
Sbjct  476  VKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLD  517

7) Psyr_1514 in NC_007005


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  380 bits (1429),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 245/524 (47%), Positives = 362/524 (70%), Gaps = 29/524 (5%)

Query  29   PITIAMQSDVVGTVLTAEGNRWGDITSELRQlvallapapeaeeaellvSSQHMHDPYVM  88
             I+   Q+ +V  +LTA+G  W +++ +L++++AL A +          S  H +D  V+
Sbjct  5    QIAALAQPSMVTQLLTADGGEW-EVSKHLQEIMALAADGTLYL------SESHQNDIHVL  57

Query  89   AFMDRLDRAGVPFQTISSTLSDIKSLYQNAGKAFAGSIDS-----TQRQQEViriigaah  143
            +F+DRLDR G  +Q   + L  I  LY+  +    G +DS     TQ Q+ V++II  A 
Sbjct  58   SFIDRLDRRGFRYQLNLTDLQTIHQLYRAVAMD--GLVDSDGQRATQMQERVVKIIRKAT  115

Query  144  arraSDVHFIVGHEIT--YIKFREDGLLREYGQIQSAVGNELCSSLFNSMCDVKSEGYYQ  201
              RASDVHF+V+   T   I+FR DGLL+   Q++S   +ELC+++++SMCDV +E  ++
Sbjct  116  ELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDV-AEPLFK  174

Query  202  PELKQDARMARTFLDQLGLSGARVATRPLVEGPLMVLRLIYDDQEKQSVDDLGFLPEQNL  261
            P+L QDARM++TF+++L L +AR+ATRP   G LM+LRL+YDD   +S+++LG+LPEQN 
Sbjct  175  PQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNA  234

Query  262  LFKRLRSLPYGVIILTGPTGSGKSKSLQVQINLLAEECKGTKHILTVEDPPEYPMRA---  318
            LF R+  +PYG+ IL+GPTGSGKS +L+V ++ L     G+KHILT+EDPPEY +R+   
Sbjct  235  LFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGI  294

Query  319  NQSPL--------GSNESWGESITNSVRLDPDILMYGEIRDLESAQGALRGGMTGHLVLS  370
            NQ+PL        +  ++W+ +I+N++RLDPD +M GE+RDL +A +A+RG+MTGH + S
Sbjct  295  NQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWS  354

Query  371  TLHTNNAVAAIPRLIDMGADTSLVTDPTLIVGLINQSLLPTLCKKCRVPARSQISTLDPQ  430
            TLHTN+A++ + RL D+G D +L+ DP+L+ GLINQSLLP LC  C+V  + +   L P+
Sbjct  355  TLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPD  414

Query  431  LVERLEKMTVLDQVYLAGPGCSLCRD-GVNGRAAVAEILLPTHRFMEEIRKNGPSAARQY  489
            LVER+ ++T + QV + GPGC  CR+ GVNGR+ VAE++LPT  FM  + K GP+ AR+Y
Sbjct  415  LVERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNY  474

Query  490  WVKHMGGITKVAHTLIKINTGLIDPRMAEAVVGPLDFDSYMLDA  533
            WVK M GITK AH++ +IN G++DP+M E  +GPLDFD  +LD 
Sbjct  475  WVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDD  518

8) plu1741 in NC_005126


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  338 bits (1269),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 206/472 (44%), Positives = 317/472 (68%), Gaps = 7/472 (1%)

Query  46   GQCVLAVSASHRLDPHVLAYEETVKRHGFIYQIVTCGMGSILELYRLNKSHNHSHGLGGT  105
            ++  L +S SH+ D HVL++ + + R+GF YQ+   ++ +I +LYR    +   ++ G  
Sbjct  40   ADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQR  99

Query  106  ESDVQRYIIRLIGEATEERASDLHIVARH--NYCEIRCRIDGYLRPVGQLRPEEGLRLCA  163
             +++Q  ++++I  ATE RASD+H+V         IR R+DG L+ V Q+R++E   LCA
Sbjct  100  ATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCA  159

Query  164  TIYQSMCDVAEPTFKPMQAQRARMKDEFLAECGLSGARINTRPLDRGMLMVLRLLYADSP  223
            TIYQSMCDVAEP FKP   Q ARM + F+    L +ARI TRP   G LM+LRLLY D+ 
Sbjct  160  TIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDT-  218

Query  224  GTVCTLSDLGYLPEQCQILEELMDHRAGVVLLSGATGSGKSTTLKVVMQKMITEQAGI-H  282
              + +L +LGYLPEQ  +++ +M    G+ +LSG+TGSGKS TLKV ++ +   ++G  H
Sbjct  219  -GLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKH  277

Query  283  LLTLEDPPEYEI--EGANQSPITGDRGDSVVIEQEWAMAIADAMRLDPDVIMVGEIRDAV  340
            +LT+EDPPEY I  EG NQ+P+  D  D+    Q WA +IA++MRLDPD +M+GE+RD  
Sbjct  278  ILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLF  337

Query  341  TAKMTFRAAMTGHLIWTTIHANDALAILPRLQDEAVMASLLMDSRLVIGLVSQALIQVLC  400
            +A  +FR+AMTGH +W+T+H+N A++I+ RL+D +V ++LL D+ L+ GL++Q+L+  LC
Sbjct  338  AAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLC  397

Query  401  PHCKVPLQGHEQEVSERLLKRLNLYCQPESVCLQGEGCDYCKQCGTVGRTVVAEVVQTSP  460
            PHCKV +Q+H+++++  L+ R+    +   V ++G GC+ C+  G  GR++VAEVV  + 
Sbjct  398  PHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTL  457

Query  461  GLMQAYRTGHHHEATRYWIMEMGGISKIDALIRKINDGMIDPRAGERVMGPI  512
            ++M+ +  G   EA  YW+  M GI+K    IR+IN+GM+DP+  E  +GP+
Sbjct  458  AFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPL  509

9) YSA_p00211 in NC_018746


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 230/525 (44%), Positives = 332/525 (64%), Gaps = 15/525 (2%)

Query  1    MGVPALATIETPREVLTAPGGKYSIDEKLRDLLCLTDDLVLHVSASHLGDPYVLGFMERL  60
            + ++ALA      ++LTA GG   +   L++++ L+ D  L +S SH  D  VL+F++RL
Sbjct  4    LQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRL  63

Query  61   GRSKVRYTLQKHPLPEIRELYanaaavrpaiavakpvGLIEETTPRQVQVQ----RLVKD  116
            +R   RY L+   L  I++LY   A            GL++    R  Q+Q    ++++ 
Sbjct  64   DRRGFRYQLNLTDLQTIHQLYRAVAMD----------GLVDSDGQRATQMQERVVKIIRK  113

Query  117  AMTCGASDIHLTIDKTRHTALVEYRVNGDLVVKDQIRAEDGQAIASTIYQSMCDVADPTY  176
            A    ASD+H+ +  +   + + +RV+G L   +Q+R+++ + + +TIYQSMCDVA+P +
Sbjct  114  ATELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLF  173

Query  177  NDLQPQDARLKQSFVKAWGLYGARIATRPTDKGTLMVMRllrssaggsleelgy-lleQI  235
            +    QDAR+ Q+FV    L++ARIATRP   G LM++RLL   +G    E    L EQ 
Sbjct  174  KPQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQN  233

Query  236  QLITRMIQRRKGIIIFSGPTGSGKSTTLQRVLSDLLELFEYKIRLLTIENPPEYEIGKGR  295
             L+ RM++   GI I+SGPTGSGKS TL+  L +L  L     ++LTIE+PPEY I    
Sbjct  234  ALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEG  293

Query  296  AIQTPILCDSDDAEAVSQEWARSISNTLRLDPDVLMVGEIRDLatakaaftaamtGHQLW  355
              QTP++ D+ D++A  Q WA +I+N +RLDPD +M+GE+RDL +A AAF +AMTGH LW
Sbjct  294  INQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLW  353

Query  356  TTLHANDLVAIVERLKDLGIEISLLTDPMLMTGLINQELVKTLCNSCKLPFVQAKAQLPS  415
            +TLH+N  ++IV+RLKDLG++ +LL DP L+TGLINQ L+  LC  CK+ F + + QL++
Sbjct  354  STLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAP  413

Query  416  DLIERVERFCTPSTVYVCGPGCSDCNGTGVRGRTVVSEVMMPNKGFMKAFREKGKADARA  475
            DL+ERV R+   S V V GPGC  C G+GV GR++V+EV++P  +FM+ F   G A+AR 
Sbjct  414  DLVERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARN  473

Query  476  YWVDHMGGITKNAHLIRLMNMGCVDPLHGERDICTLDEDEITLRD  520
            YWV  M GITK+AH IR +N G  DP   E  I  LD DE  L D
Sbjct  474  YWVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLDD  518

10) pilQ in NC_012962


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  319 bits (1195),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 202/472 (43%), Positives = 313/472 (67%), Gaps = 9/472 (1%)

Query  46   GQCILAVSASHRLDPHVLAYEETVKRHGLIYQIVTCGMGNILELYRLG--KGHCHGLGGT  103
            ++  L +S SH+ D HVL++ + + R+G+ YQ+   ++  I +LYR     G  ++ G  
Sbjct  40   ADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLNLTDLQTIHQLYRAVAMDGLVDSDGQR  99

Query  104  ESDVQRYIIRLIGEATEERASDLHIVARY--NYCEIRCRIDGHLRPIGQLRPAEGLRLCA  161
             +++Q  ++++I  ATE RASD+H+V         IR R+DG L+ + Q+R+ E   LCA
Sbjct  100  ATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCA  159

Query  162  TIYQSMCDVAEPTFKPMQAQRARMKDEFLTECGLSGARINTRPLDRGMLMVLRLLYADSP  221
            TIYQSMCDVAEP FKP   Q ARM + F+    L +ARI TRP   G LM+LRLLY D+ 
Sbjct  160  TIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDT-  218

Query  222  GTMCTLSDLGYLPEQCQILEELMDHRTGVVLLSGATGSGKSTTLKVVMQKMIAEQAGI-H  280
              + +L +LGYLPEQ  +++ +M    G+ +LSG+TGSGKS TLKV ++ +   ++G  H
Sbjct  219  -GLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKH  277

Query  281  LLTLEDPPEYEI--AGANQSPITGDRGDSVVVEQEWAMAIADAMRLDPDVIMVGEIRDAV  338
            +LT+EDPPEY I   G NQ+P+  D  D+    Q WA +IA++MRLDPD +M+GE+RD  
Sbjct  278  ILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLF  337

Query  339  TAKMTFRAAMTGHLIWTTIHANDALAILPRLQDEAVMESLLMDSRLVIGLVNQSLIQVLC  398
            +A  +FR+AMTGH +W+T+H+N A++I+ RL+D +V  +LL D+ L+ GL+NQSL+  LC
Sbjct  338  AAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLC  397

Query  399  PHCKVPLKGHEWEVSERLLKRLNLYCQSESVCLQGAGCDFCKQSGILGRTVVAEVVRTSP  458
            PHCKV +++H+ +++  L+ R+    +   V ++G+GC+ C+ SG+ GR++VAEVV  + 
Sbjct  398  PHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTL  457

Query  459  GLMQAYRMGHHHGATRYWISEMGGLSKVDALICKINDGIIDPRAAERVMGPI  510
            ++M+ +  G    A  YW+  M G++K    I +IN+G++DP+  E  +GP+
Sbjct  458  AFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPL  509

11) pilQ2 in NC_021361


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  316 bits (1183),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 213/515 (42%), Positives = 322/515 (63%), Gaps = 22/515 (4%)

Query  1    MTALQIAAVPIGT-----LSAKGQKWEASDYLRTIICLTSDYVLHVVQGYGTDPRVLAYI  55
            MT LQIAA++  +     L+A G  WE S  L+ I+ L++D  L + ++   D +VL++I
Sbjct  1    MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFI  60

Query  56   DELRRAKVKATQNYVTPEALKALYGGVTSNTDAFFQASGSANSTGKGKQEQVVDILRNAT  115
            D L R   +   N    +++  LY +V+   D++ ++ G   +     QE+VV I+R+AT
Sbjct  61   DRLDRRGFRYQLNLTDLQTIHQLYRAVA--MDGLVDSDGQRATQ---MQERVVKIIRKAT  115

Query  116  QAGASDIHFFASP--NGHHMRFRVHGELETAQSFVGKDGERMMSAIYETMSEQIGTNYRP  173
            +  ASD+HF  SP   G  +RFRV+G L T + F +++ + + ++IY++M +     ++P
Sbjct  116  ELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKP  175

Query  174  GESQDGRLRSEFVTECGLFGARIATRPTLNGPWMAMRLLYDNGKLMTLPSMGYLPEQIDA  233
               QD+R+   FV    LF+ARIATRP   G  M +RLLYD+  L +L  +GYLPEQ   
Sbjct  176  QLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDTGLDSLEQLGYLPEQNAL  235

Query  234  LMRMVHRTDGMVFLTGTTGSGKSRGIQTLLNMLLVAMDFTINLVTIEDPVEYRI--EKAN  291
            + RM++   G+ +L+G TGSGKS  ++  L+ L    + + +++TIEDP EYRI  E  N
Sbjct  236  FDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGIN  295

Query  292  QTP--------KAPGEQWDEAIANVMRLDPDVLLVGEARDRASLLAAFQLALTGHGLWST  343
            QTP         A  + W  +IAN MRLDPD +++GE RD  + +AAF+ A+TGHGLWST
Sbjct  296  QTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWST  355

Query  344  LHVNAAIQAFQRIHDLGVEDNLVFDPALMKGIVNQSLTRVLCSNCKVPYLQHRERLSADQ  403
            LH N+AI   QR+ DLGV+  L+FDPAL+ G++NQSL   LC++CKV + +H+++L++D 
Sbjct  356  LHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDL  415

Query  404  RSRIESSCIPEQIYLKGEGCTKCSGRGIVDRTAIAEIMQPDLPFMRMYRDHGKAEAQVFW  463
              R+       Q+ +KG GC  C G G+ +R+ +AE++ P L+FMR++   G AEA+ +W
Sbjct  416  VERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYW  475

Query  464  VREQGGITKNEHLIRRINEGIVDPTHGERDVCPLD  498
            V+   GITK+ H IRRINEG+ DP   E  + PLD
Sbjct  476  VKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLD  510

12) BamMC406_5660 in NC_010557


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  285 bits (1065),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 201/494 (41%), Positives = 319/494 (65%), Gaps = 17/494 (3%)

Query  94   SDSGEFAASDEERKFLCLLDDGTLLVAEGHEMNPFVLSYCARLERLNCHYTTRLVTLDAI  153
            +D+GE   S + + ++ L  DGTL ++E+H+ +  VLS+  RL+R   +Y   L  L++I
Sbjct  21   ADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLNLTDLQTI  80

Query  154  RRSYQGPRRDGSAERIDH--TRMQVLAKNLIARACDERASDIHIRVNRFST--EILFRIH  209
            ++ Y++   DG  +  ++  T+MQ    ++I +A + RASD+H+ V+  +T   I FR+ 
Sbjct  81   HQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRV-  139

Query  210  NELVRISEQTREYGERLL-ATLYAAMSSVSDNTYKPNERQDAAIGDR--DKLPDRLFGVR  266
            + L++  EQ R    + L AT+Y +M  V++  +KP+  QDA +++   +KL   LF+ R
Sbjct  140  DGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKL--NLFSAR  197

Query  267  IATAPTSVGSVMVLRLLYNDAGEATALTELGFTVAQANAFELLAQQPHGMNIISGPTGSG  326
            IAT P + G +M+LRLLY+D+G   +L +LG+   Q   F+ + + P G+NI+SGPTGSG
Sbjct  198  IATRPRAGGFLMILRLLYDDTG-LDSLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSG  256

Query  327  KSTTLQRVLTKQLREMAGSIHVITVEDPVEYPI--EGAVQTPVVNAPTE-EARSLAFAAA  383
            KS TL+  L    +  +GS H++T+EDP EY I  EG  QTP+V  +T+ +A   A AA+
Sbjct  257  KSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAG  316

Query  384  IANAMRLDPDTIMIGEVRDRASAQSALRAAMTGHQVWTTVHANGALAIVDRLVDLGLPIA  443
            IAN+MRLDPD +MIGEVRD  +A +A+R+AMTGH +W+T+H+N+A++IV+RL DLG+  +
Sbjct  317  IANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPG  376

Query  444  MVTDESLVTGLISQRLAKLLCPHCSRPLAEAMAQLDMGLVARVKRAVGARFDAVRVAGPG  503
            ++ D +L+TGLI+Q L   LCPHC   + +   QL  +LV RV+R  +     V+V GPG
Sbjct  377  LLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDV--SQVHVKGPG  434

Query  504  CPNCKNGTV-GRTVVAEVVRTDATFCELLRAGRKPDAQAYWLSELAGQTVAQHALEKVAA  562
            C  C+ + V GR++VAEVV    +F  ++  G  ++A+ YW+  + G T   HA+ ++  
Sbjct  435  CQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINE  494

Query  563  GLIDPRMAERVVGP  576
            G++DP+M E  +GP
Sbjct  495  GMFDPQMVEDFIGP  508

13) Bamb_5877 in NC_008392


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 201/494 (41%), Positives = 319/494 (65%), Gaps = 17/494 (3%)

Query  6    SDSGEFAASEEERKFLCLLDDGTLLVAEGHEMNPFVLSYCARLERLNCHYTTRLVTLDAI  65
            +D+GE   S + + ++ L  DGTL ++E+H+ +  VLS+  RL+R   +Y   L  L++I
Sbjct  21   ADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLNLTDLQTI  80

Query  66   RRSYQGPRRDGSAERIDH--TRMQVLAKNLIARACDERASDIHIRVNRFST--EILFRIH  121
            ++ Y++   DG  +  ++  T+MQ    ++I +A + RASD+H+ V+  +T   I FR+ 
Sbjct  81   HQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRV-  139

Query  122  NELVRISEQTREYGERLL-ATLYAAMSSVSDNTYKPNERQDAAIGDR--DKLPDRLFGVR  178
            + L++  EQ R    + L AT+Y +M  V++  +KP+  QDA +++   +KL   LF+ R
Sbjct  140  DGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKL--NLFSAR  197

Query  179  IATAPTSVGSVMVLRLLYNDAGEATALTELGFTVAQANAFELLAQQPHGMNIISGPTGSG  238
            IAT P + G +M+LRLLY+D+G   +L +LG+   Q   F+ + + P G+NI+SGPTGSG
Sbjct  198  IATRPRAGGFLMILRLLYDDTG-LDSLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSG  256

Query  239  KSTTLQRVLTKQLREMAGSIHVITVEDPVEYPI--EGAVQTPVVNAPTE-EARSLAFAAA  295
            KS TL+  L    +  +GS H++T+EDP EY I  EG  QTP+V  +T+ +A   A AA+
Sbjct  257  KSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAG  316

Query  296  IANAMRLDPDTIMIGEVRDRASAQSALRAAMTGHQVWTTVHANGALAIVDRLVDLGLPIA  355
            IAN+MRLDPD +MIGEVRD  +A +A+R+AMTGH +W+T+H+N+A++IV+RL DLG+  +
Sbjct  317  IANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPG  376

Query  356  MVTDESLVTGLISQRLAKLLCPHCSRPLAEAMAQLDMGLVARVKRAVGARFDAVRVAGPG  415
            ++ D +L+TGLI+Q L   LCPHC   + +   QL  +LV RV+R  +     V+V GPG
Sbjct  377  LLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDV--SQVHVKGPG  434

Query  416  CPHCKNGTV-GRTVVAEVVRTDATFCELLRAGRKPDAQAYWLSELAGQTVAQHALEKVAA  474
            C  C+ + V GR++VAEVV    +F  ++  G  ++A+ YW+  + G T   HA+ ++  
Sbjct  435  CQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINE  494

Query  475  GLIDPRMAERVVGP  488
            G++DP+M E  +GP
Sbjct  495  GMFDPQMVEDFIGP  508

14) Bcenmc03_5912 in NC_010515


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 199/495 (41%), Positives = 315/495 (64%), Gaps = 17/495 (3%)

Query  28   SGEGPWAASAEERKllcllddgrllIAEGHELSPYVLSYRARLDRLRHHYRMQAVGLDEV  87
            ++ G W  S + + ++ L  DG L ++E+H+    VLS+  RLDR   +Y+++  +L+ +
Sbjct  21   ADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQLNLTDLQTI  80

Query  88   RRAYEGMRSDGTGERVDHTAMQVLAK--ELIAHACRERASDIHIRVKRFST--EILFRIH  143
            ++ Y ++  DG  +  ++ A Q+  +   +I  A   RASD+H+ V   +T   I FR+ 
Sbjct  81   HQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRV-  139

Query  144  NELVRVSEQTREQGARLL-ATLYAAMASVSDNTYKPHERQDAAIGDR--DKLPAELFGVR  200
            + L++  EQ R Q  + L AT+Y +M  V++  +KP+  QDA +++   +KL  +LF+ R
Sbjct  140  DGLLKTVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKL--NLFSAR  197

Query  201  IATAPTSIGNVMVLRLLYNDAGDSIDLRLLGFSDAQAAEIDELRRLPHGMNIISGPTGSG  260
            IAT P + G +M+LRLLY+D+G    L  LG+   Q A +D + R+P G+NI+SGPTGSG
Sbjct  198  IATRPRAGGFLMILRLLYDDTGLD-SLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSG  256

Query  261  KSTTLQRVLAGQIAETHGSVHVITVEDPVEYPI--AGAVQTPVVNAPTE-EARSLAFAGA  317
            KS TL+  L G      GS H++T+EDP EY I   G  QTP+V  +T+ +A   A A++
Sbjct  257  KSMTLKVTLEGLDKLHGGSKHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAG  316

Query  318  IANAMRLDPDTIMIGEVRDRASAQSALRASMTGHQVWTTVHANGALAIIDRLVDLGLPLA  377
            IAN+MRLDPD +MIGEVRD  +A +A+R++MTGH +W+T+H+N+A++I++RL DLG+  +
Sbjct  317  IANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPG  376

Query  378  MVTDESLITGLVSQRLVKLLCPHCKQRLAGSPQQ-DDALaarvrravGASFDKVFVQGPG  436
            ++ D +L+TGL++Q L+  LCPHCK R+ +  +Q    L  RVRR  + S  +V V+GPG
Sbjct  377  LLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDVS--QVHVKGPG  434

Query  437  CEHCGGRGTIGRTVVAEVIRPDARLFAYLREGDKHAARAYWLDELGGRTTVEHTIEKVAA  496
            C+ C G G  GR++VAEV+ P   +   +  G+   AR YW+  + G T   H+I ++  
Sbjct  435  CQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINE  494

Query  497  GLVDPRAAERIVGPL  511
            G+ DP+  E ++GPL
Sbjct  495  GMFDPQMVEDFIGPL  509

15) Bpro_5448 in NC_007950


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  245 bits (914),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 183/418 (44%), Positives = 281/418 (68%), Gaps = 12/418 (2%)

Query  95   QASEMQKAAKTVFKKAVERRASDIHIRVFNKG-GTKVFFRIHNDLHLVQEDTATWGHLMC  153
            +A++MQ     +++KA E RASD+H+ V   G G+K+ FR++  L  V++  +   H +C
Sbjct  99   RATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELC  158

Query  154  SAIYTSMCDVADATFDVNNRQDARISER--DKLPPGLDGIRVATTPQVDGNVMVLRLLYN  211
            ++IY SMCDVA++ F  +  QDAR+S+   +KL   L + R+AT P+ +G +M+LRLLY+
Sbjct  159  ATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKL--NLFSARIATRPRAGGFLMILRLLYD  216

Query  212  DADKSTDICALGYEPQQKAQVDSMKRRPTGINIISGPTGSGKSTTLQRTLLSIHSECNGQ  271
            D++  + +  LGY P+Q+A  D M R P GINI+SGPTGSGKS TL+ TL +++    G 
Sbjct  217  DTGLDS-LEQLGYLPEQNALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGS  275

Query  272  KHIITVEDPPEYPMPG--IVQTPVANAETE-EDRSNAFQAAIKATMRLDPNIIMIGEMRD  328
            KHI+T+EDPPEY + G  I QTP+    T+ +   +A  A+I   MRLDP+ +MIGE+RD
Sbjct  276  KHILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRD  335

Query  329  TPSVQLAVRAAMTGHQVWSTVHANNAFAIIDRMVDLGVSLNIMADPSIVTGMICQRLLKV  388
              +   A R+AMTGH +WST+H+N+A++I++R+ DLGV   ++ DP+++TG+I Q LL  
Sbjct  336  LFAAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPK  395

Query  389  LCPHCKKPLREVIDNFSHEDQMRVMGSIDVASAQVHVAGTDCEHCSGSgvagrtvvaevv  448
            LCPHCK  +++  D+++ +   RV    DV  +QVHV G +C+ C GSGV GR++VAEVV
Sbjct  396  LCPHCKVRFQDHQDQLAPDLVERVRRLTDV--SQVHVKGPGCQACRGSGVNGRSIVAEVV  453

Query  449  vPDHKLMDLIRKGDRQLAIDYW-RSTGGSSMLEQAIIKINRGLVDPFRAEEEVGPLNL  505
            +P   +M ++ KG+   A +YW ++  G +   +AI +IN G+ DP   E+ +GPL++
Sbjct  454  LPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLDF  511

16) Bpro_5243 in NC_007949


> AY273869|90|G80|32481693|AAP84207.1|Pseudomonas_aeruginosa_PA14|-|76475..78055|pilQ2|RL082|PilQ2
Length=526

 Score =  241 bits (899),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 187/428 (44%), Positives = 281/428 (66%), Gaps = 10/428 (2%)

Query  95   QASEMQKAAKTVFKKAVERRASDIHIRVFNKG-GTKVFFRIHNDLHLVQEDTATWGHLMC  153
            +A++MQ     +++KA E RASD+H+ V   G G+K+ FR++  L  V++  +   H +C
Sbjct  99   RATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRVDGLLKTVEQFRSQELHELC  158

Query  154  SAIYTSMCDVADATFDVNNRQDARISGRDKVPPGLDGIRVATTPQVDGNVMVLRLLYNDT  213
            ++IY SMCDVA++ F  +  QDAR+S        L + R+AT P+ +G +M+LRLLY+DT
Sbjct  159  ATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYDDT  218

Query  214  DKSTDICALGYEPSQKAQVDSMKRRPTGINIISGPTGSGKSTTLQRTLLSIHSECKGSKH  273
            +  + +  LGY P Q+A  D M R P GINI+SGPTGSGKS TL+ TL +++    GSKH
Sbjct  219  GLDS-LEQLGYLPEQNALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKH  277

Query  274  IITVEDPPEYPMPG--IVQTPVANAETE-EDRSNAFQAAIKATMRLDPNIIMIGEMRDTP  330
            I+T+EDPPEY + G  I QTP+    T+ +   +A  A+I   MRLDP+ +MIGE+RD  
Sbjct  278  ILTIEDPPEYRIRGEGINQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLF  337

Query  331  SVQLAVRAAMTGHQVWSTVHANNAFAIIDRMVDLGVSLNIMADPSIVTGMICQRLLKVLC  390
            +   A R+AMTGH +WST+H+N+A++I++R+ DLGV   ++ DP+++TG+I Q LL  LC
Sbjct  338  AAVAAFRGAMTGHGLWSTLHTNSAIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLC  397

Query  391  PHCKRPLRDVIDHFSHEDQMRVMGSIDMANAHVAGLGCEHCSGSgvagrtvvaevvvPDQ  450
            PHCK  ++D  D+++ +   RV    D+++ HV G GC+ C GSGV GR++VAEVV+P  
Sbjct  398  PHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKGPGCQACRGSGVNGRSIVAEVVLPTL  457

Query  451  KIMDFIRKGDRHLAINYW-RGTGGSSMLEQAIVKINRGIVDPFQAEEEVGPLN----LLP  505
             +M  + KG+   A NYW +   G +   +AI +IN G+ DP   E+ +GPL+    LL 
Sbjct  458  AFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINEGMFDPQMVEDFIGPLDFDEHLLD  517

Query  506  EPALAQEG  513
            ++  +QE+
Sbjct  518  DSFYSQEA  525