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Homologs of hrpF gene of U56662

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpF
( YP_003539949.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

7e-27

100

2) hrpF
( YP_003529905.1 )

type III secretion protein HrpF

NC_013961
(Erwinia amylovora CFBP1430)

7e-27

100

3) hrpF
( YP_005818272.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrpF protein

NC_017445
(Erwinia sp. Ejp617)

2e-26

4) hrpF
( YP_005804074.1 )

type III secretion protein HrpF

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-26

5) hrpF
( YP_002650057.1 )

Hrp/hrc secretion/translocation pathway protein HrpF

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-26

6) hrpF
( YP_001906480.1 )

HrpF protein

NC_010694
(Erwinia tasmaniensis Et1/99)

6e-25

7) hrpF
( YP_003883225.1 )

HrpF protein

NC_014500
(Dickeya dadantii 3937)

2e-15

8) Ser39006_2902
( YP_008523284.1 )

HrpF family protein

NC_022268
(Serratia sp. ATCC 39006)

3e-15

9) PC1_2194
( YP_003017769.1 )

HrpF family protein

NC_012917
(Pectobacterium carotovorum PC1)

9e-15

10) PCC21_022720
( YP_006646928.1 )

type III secretion protein

NC_018525
(Pectobacterium carotovorum PCC21)

1e-14

11) hrpF
( YP_050193.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-14

12) Dd1591_1905
( YP_003004234.1 )

HrpF family protein

NC_012912
(Dickeya zeae Ech1591)

8e-14

13) Dd586_1904
( YP_003333468.1 )

HrpF family protein

NC_013592
(Dickeya dadantii Ech586)

2e-13

14) Marme_1065
( YP_004312176.1 )

HrpF family protein

NC_015276
(Marinomonas mediterranea MMB-1)

8e-11

15) hrpF
( YP_005210959.1 )

protein HrpF

NC_016830
(Pseudomonas fluorescens F113)

2e-04

16) Pmen_0025
( YP_001185532.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-04

17) PSEBR_a5373
( YP_004356882.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-04

• Sequence Alignments

1) hrpF in NC_013971


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  113 bits (411),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

2) hrpF in NC_013961


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  113 bits (411),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

3) hrpF in NC_017445


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  111 bits (405),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 72/74 (98%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MSSLSALQRRLDSQFDKAQTQLDDATLNASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSS+SALQRRLDSQFDKAQTQLDDATL+ASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

4) hrpF in NC_017390


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  111 bits (403),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 71/74 (96%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MSSLSPLQRRLDSQFDKAQTQLDDATLNASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSS+S+LQRRLDSQFDKAQTQLDDATL+ASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

5) hrpF in NC_012214


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  111 bits (403),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 71/74 (96%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MSSLSPLQRRLDSQFDKAQTQLDDATLNASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSS+S+LQRRLDSQFDKAQTQLDDATL+ASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

6) hrpF in NC_010694


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score =  106 bits (387),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 68/74 (92%), Positives = 72/74 (98%), Gaps = 0/74 (0%)

Query  1   MSSLSALQRRLDSQFNRAQNQLDDATQNASEGYSQEDSFAFFEASMGLSNASWAASQELT  60
           MSS+SALQRRLDSQF++AQ QLDDAT +ASEGYSQEDSFAFFEASMGLSNASWAASQELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  VKHGLAKAIINEIN  74
           VKHGLAKAIINEIN
Sbjct  61  VKHGLAKAIINEIN  74

7) hrpF in NC_014500


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 75.2 bits (266),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 47/75 (63%), Positives = 63/75 (84%), Gaps = 1/75 (1%)

Query  1   MSSSSPIQRRLDGAFVDAQSRLDEMALNVSEGEVSAADSYAFYEASMDYSNANWAAGQML  60
           MSS S++QRRLD+ F  AQ++LD+ +L+ SEG  S  DS+AF+EASM+ SNA+WAA+Q L
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQEL  59

Query  61  SVKHGLAKAIINDFN  75
           +VKHGLAKAIIN++N
Sbjct  60  TVKHGLAKAIINEIN  74

8) Ser39006_2902 in NC_022268


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 75.0 bits (265),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 63/75 (84%), Gaps = 1/75 (1%)

Query  2   MSSPTALQRRLDSAFSDAQSRLDDLAMNVADEGASLSDTYAFYEASMDYSNANWAAGQML  61
           MSS +ALQRRLDS F  AQ++LDD +++ A EG S  D++AF+EASM+ SNA+WAA+Q L
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLD-ASEGYSQEDSFAFFEASMGLSNASWAASQEL  59

Query  62  SVKHGLAKAIINDFN  76
           +VKHGLAKAIIN++N
Sbjct  60  TVKHGLAKAIINEIN  74

9) PC1_2194 in NC_012917


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 73.1 bits (258),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 45/73 (62%), Positives = 62/73 (85%), Gaps = 1/73 (1%)

Query  2   SLNPIQRRLDAHLVDSQKQLDDIALNVAEGGASQADSYAFFEASMDYSNASWAVGQLLSV  61
           S++++QRRLD+++  +Q QLDD +L+ +EG  SQ DS+AFFEASM+ SNASWA +Q L+V
Sbjct  3   SISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQELTV  61

Query  62  KHGLAKAIINDFN  74
           KHGLAKAIIN++N
Sbjct  62  KHGLAKAIINEIN  74

10) PCC21_022720 in NC_018525


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 72.6 bits (256),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 45/73 (62%), Positives = 62/73 (85%), Gaps = 1/73 (1%)

Query  2   SLNPIQRRLDAHLVDSQQQLDDIALNVAEGGASQADSYAFFEASMDYSNASWAVGQLLSV  61
           S++++QRRLD+++  +Q QLDD +L+ +EG  SQ DS+AFFEASM+ SNASWA +Q L+V
Sbjct  3   SISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQELTV  61

Query  62  KHGLAKAIINDFN  74
           KHGLAKAIIN++N
Sbjct  62  KHGLAKAIINEIN  74

11) hrpF in NC_004547


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 72.1 bits (254),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 44/73 (61%), Positives = 62/73 (85%), Gaps = 1/73 (1%)

Query  2   SLNPIQRRLDAHLVDSQQQLDDIALNVAEGGASQADSYAFFEASMDYSNANWAVGQLLSV  61
           S++++QRRLD+++  +Q QLDD +L+ +EG  SQ DS+AFFEASM+ SNA+WA +Q L+V
Sbjct  3   SISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQELTV  61

Query  62  KHGLAKAIINDFN  74
           KHGLAKAIIN++N
Sbjct  62  KHGLAKAIINEIN  74

12) Dd1591_1905 in NC_012912


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 70.0 bits (246),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 46/75 (62%), Positives = 61/75 (82%), Gaps = 1/75 (1%)

Query  1   MSSSSPIQRRLDGAFVDAQSRLDEMAQSLSEGEVSMADSYAFYEASMDYSNANWAAGQML  60
           MSS S++QRRLD+ F  AQ++LD+ +   SEG  S  DS+AF+EASM+ SNA+WAA+Q L
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQEL  59

Query  61  SVKHGLAKAIINDFN  75
           +VKHGLAKAIIN++N
Sbjct  60  TVKHGLAKAIINEIN  74

13) Dd586_1904 in NC_013592


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 68.9 bits (242),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 44/75 (59%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query  1   MSLSSPIQRRLDSAFVDAQSRLDEMAQTISQGEVSPADTYAFYEASMDYSNANWAAGQML  60
           MS  S++QRRLDS F  AQ++LD+ +   S+G  S  D++AF+EASM+ SNA+WAA+Q L
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEG-YSQEDSFAFFEASMGLSNASWAASQEL  59

Query  61  SVKHGLAKAIINDFN  75
           +VKHGLAKAIIN++N
Sbjct  60  TVKHGLAKAIINEIN  74

14) Marme_1065 in NC_015276


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 60.0 bits (208),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 39/73 (54%), Positives = 52/73 (72%), Gaps = 1/73 (1%)

Query  1   MSSIEGLRNRLDSQFERTQDAIDKIATNV-EGISLDDIAAFNSARRQNASASWALNQELT  59
           MSSI +L+ RLDSQF+++Q  +D  + +  EG S +D  AF  A    ++ASWA +QELT
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  60  VKHNLAKSIINEI  72
           VKH LAK+IINEI
Sbjct  61  VKHGLAKAIINEI  73

15) hrpF in NC_016830


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 38.7 bits (127),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/73 (43%), Positives = 53/73 (73%), Gaps = 0/73 (0%)

Query  1   MSSTDAVQRRLDTYFQRATDNVNNAAMNAAESQSLDDMHSFLTSMNGMSvavnaatqqtt  60
           MSS  A+QRRLD+ F++A  ++++A+++A+E+ S +D  +F+ +  G+S A  AA+Q+ T
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  ahhnLAKAIIDAM  73
             H LAKAII+ +
Sbjct  61  VKHGLAKAIINEI  73

16) Pmen_0025 in NC_009439


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 38.7 bits (127),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 46/74 (63%), Gaps = 0/74 (0%)

Query  1   MSSLEALRNRLDRAQESAVRNKDDALLQAAESADINDMHAYNEAARKAQLVSTVVSEELR  60
           MSS+ AL+ RLD   + A  + DDA L+A+E+   +D  A+ EA+      S   S+EL 
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  AQHGLTKAIIDGIQ  74
            +HGL+KAII+ I+
Sbjct  61  VKHGLAKAIINEIN  74

17) PSEBR_a5373 in NC_015379


> U56662|9|G6|1336091|AAB49177.1|Erwinia_amylovora_321|+|2870..3094|hrpF|-|HrpF
Length=74

 Score = 37.7 bits (123),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/73 (43%), Positives = 52/73 (72%), Gaps = 0/73 (0%)

Query  1   MSSADAVQRRLDTYFQRATDNVNNAAMNAAESQSLDDMHSFVTSMNGMSvavnaatqqtt  60
           MSS  A+QRRLD+ F++A  ++++A+++A+E+ S +D  +F  +  G+S A  AA+Q+ T
Sbjct  1   MSSISALQRRLDSQFDKAQTQLDDATLDASEGYSQEDSFAFFEASMGLSNASWAASQELT  60

Query  61  ahhnLAKAIIDAM  73
             H LAKAII+ +
Sbjct  61  VKHGLAKAIINEI  73