Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of SF2970 gene of NC_004337_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EC55989_4680
( - )

NC_011748
(Escherichia coli 55989)

e-197

100

2) unnamed
( - )

NC_007613
(Shigella boydii Sb227)

e-195

99.4

3) SbBS512_E4654
( - )

NC_010658
(Shigella boydii CDC 3083-94)

e-194

99.1

4) EC55989_3277
( - )

NC_011748
(Escherichia coli 55989)

e-195

99.1

5) ECO111_3719
( - )

NC_013364
(Escherichia coli 11128)

e-140

99.6

• Sequence Alignments

1) EC55989_4680 in NC_011748


>NC_004337_P1|9|G6|24114234|NP_708744.1|Shigella_flexneri_2a_str._301|-|12863..13210|-|SF2970|hypothetical 
          Length = 348

 Score = 685 bits (1769), Expect = e-197
 Identities = 348/348 (100%)
 Strand = Plus / Plus

Query: 61  atgaagacccagtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaagacccagtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 60

Query: 121 tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 120

Query: 181 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 180

Query: 241 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 240

Query: 301 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 300

Query: 361 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 348

2) unnamed in NC_007613


>NC_004337_P1|9|G6|24114234|NP_708744.1|Shigella_flexneri_2a_str._301|-|12863..13210|-|SF2970|hypothetical 
          Length = 348

 Score = 678 bits (1750), Expect = e-195
 Identities = 346/348 (99%)
 Strand = Plus / Plus

Query: 56  atgaagaccctgtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 115
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaagacccagtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 60

Query: 116 tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 120

Query: 176 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 180

Query: 236 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 240

Query: 296 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 300

Query: 356 cgggtcagcgaactgcttccgtggcgcatagcactgccagctaaataa 403
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 348

3) SbBS512_E4654 in NC_010658


>NC_004337_P1|9|G6|24114234|NP_708744.1|Shigella_flexneri_2a_str._301|-|12863..13210|-|SF2970|hypothetical 
          Length = 348

 Score = 676 bits (1743), Expect = e-194
 Identities = 345/348 (99%)
 Strand = Plus / Plus

Query: 61  atgaagaccctgtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaagacccagtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 60

Query: 121 tggccggcactgacgtactatgcgaacgatagctgggtggaaatcgacaacaacatcgct 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61  tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 120

Query: 181 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctattcttcggctctgac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 180

Query: 241 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 240

Query: 301 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 300

Query: 361 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 348

4) EC55989_3277 in NC_011748


>NC_004337_P1|9|G6|24114234|NP_708744.1|Shigella_flexneri_2a_str._301|-|12863..13210|-|SF2970|hypothetical 
          Length = 348

 Score = 676 bits (1744), Expect = e-195
 Identities = 345/348 (99%)
 Strand = Plus / Plus

Query: 139 atgaagaccctgtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 198
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaagacccagtcgcgacactcagagttggcgaaggcgttcgcgtacgcacttaaccag 60

Query: 199 tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacgacatcgct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61  tggccggcactgacgtactatgcgaacgatggctgggtggaaatcgacaacaacatcgct 120

Query: 259 gaaaatgccctgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 318
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaatgccttgcgggcggtcagtctgggtcgtaaaaacttcctgttcttcggctctgac 180

Query: 319 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggtggtgagcggggagcgctactgtacagcctgatcgggacgtgcaaactgaatgac 240

Query: 379 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatccagaaagctaccttcgccatgtgcttggcgtcatagcagactggccggtcaac 300

Query: 439 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgggtcagcgaactgcttccgtggcgcatagcactgccagctgaataa 348

5) ECO111_3719 in NC_013364


>NC_004337_P1|9|G6|24114234|NP_708744.1|Shigella_flexneri_2a_str._301|-|12863..13210|-|SF2970|hypothetical 
          Length = 348

 Score = 493 bits (1273), Expect = e-140
 Identities = 251/252 (100%)
 Strand = Plus / Plus

Query: 1   gtggaaatcgacaacaacatcgctgaaaatgccctgcgggcggtcagtctgggtcgtaaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97  gtggaaatcgacaacaacatcgctgaaaatgccttgcgggcggtcagtctgggtcgtaaa 156

Query: 61  aacttcctgttcttcggctctgaccatggtggtgagcggggagcgctactgtacagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aacttcctgttcttcggctctgaccatggtggtgagcggggagcgctactgtacagcctg 216

Query: 121 atcgggacgtgcaaactgaatgacgtggatccagaaagctaccttcgccatgtgcttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atcgggacgtgcaaactgaatgacgtggatccagaaagctaccttcgccatgtgcttggc 276

Query: 181 gtcatagcagactggccggtcaaccgggtcagcgaactgcttccgtggcgcatagcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcatagcagactggccggtcaaccgggtcagcgaactgcttccgtggcgcatagcactg 336

Query: 241 ccagctgaataa 252
           ||||||||||||
Sbjct: 337 ccagctgaataa 348