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PAthogenisity Island DataBase (PAI DB)

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Homologs of pipD gene of NC_003197_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pipD
( YP_005236828.1 )

pathogenicity island-encoded protein D

NC_016856
(Salmonella enterica 14028S)

0.0

100

2) pipD
( YP_005396509.1 )

secreted peptidase

NC_017046
(Salmonella enterica 798)

0.0

100

3) SU5_01725
( YP_006087361.1 )

pathogenicity island encoded protein: SPI3

NC_017623
(Salmonella enterica B182)

0.0

100

4) SeHA_C1204
( YP_002045095.1 )

peptidase family C69

NC_011083
(Salmonella enterica SL476)

0.0

100

5) pipD
( YP_005241990.1 )

pathogenicity island-encoded protein D

NC_016857
(Salmonella enterica ST4/74)

0.0

100

6) SBOV10071
( YP_008504880.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

0.0

7) SPAB_02461
( YP_001588675.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

8) SeSA_A1158
( YP_002114092.1 )

peptidase family C69

NC_011094
(Salmonella enterica CVM19633)

0.0

9) SEEH1578_14695
( YP_008246998.1 )

secreted peptidase

NC_021810
(Salmonella enterica 41578)

0.0

100

10) CFSAN002069_03550
( YP_008249566.1 )

peptidase

NC_021812
(Salmonella enterica CFSAN002069)

0.0

100

11) pipD
( NP_460067.1 )

pathogenicity island-encoded protein D

NC_003197
(Salmonella enterica LT2)

0.0

100

12) pipD
( YP_005180946.1 )

putative secreted peptidase

NC_016810
(Salmonella enterica SL1344)

0.0

100

13) STMDT12_C11130
( YP_005246809.1 )

peptidase C69 family protein

NC_016860
(Salmonella enterica T000240)

0.0

100

14) pipD
( YP_005251604.1 )

pathogenicity island-encoded protein D

NC_016863
(Salmonella enterica UK-1)

0.0

100

15) STBHUCCB_19420
( YP_005217482.1 )

dipeptidase

NC_016832
(Salmonella enterica P-stx-12)

0.0

16) SNSL254_A1189
( YP_002040349.1 )

peptidase family C69

NC_011080
(Salmonella enterica SL254)

0.0

17) TY21A_09290
( YP_007926144.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

0.0

18) SN31241_21610
( YP_008360078.1 )

dipeptidase

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

19) SE451236_11320
( YP_008265293.1 )

peptidase

NC_021820
(Salmonella enterica 08-1736)

0.0

100

20) CFSAN001921_11705
( YP_008255711.1 )

peptidase

NC_021814
(Salmonella enterica CFSAN001921)

0.0

100

21) SEEB0189_14100
( YP_008309132.1 )

peptidase

NC_021844
(Salmonella enterica CFSAN000189)

0.0

22) CFSAN001992_06175
( YP_007470991.1 )

secreted peptidase

NC_020307
(Salmonella enterica CFSAN001992)

0.0

23) CFSAN002050_11865
( YP_008260288.1 )

peptidase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

24) pipD
( NP_455591.1 )

putative secreted peptidase

NC_003198
(Salmonella enterica CT18)

0.0

25) pipD
( YP_002243088.1 )

secreted peptidase

NC_011294
(Salmonella enterica P125109)

0.0

26) pipD
( YP_002638198.1 )

peptidase

NC_012125
(Salmonella enterica RKS4594)

0.0

27) SeAg_B1053
( YP_002145963.2 )

peptidase family C69 protein

NC_011149
(Salmonella enterica SL483)

0.0

28) pipD
( NP_805597.1 )

secreted peptidase

NC_004631
(Salmonella enterica Ty2)

0.0

29) STU288_01800
( YP_007901465.1 )

pathogenicity island encoded protein: SPI3

NC_021151
(Salmonella enterica U288)

0.0

30) pipD
( YP_002226048.1 )

peptidase

NC_011274
(Salmonella enterica 287/91)

0.0

31) pipD
( YP_005213121.1 )

putative secreted peptidase

NC_016831
(Salmonella enterica RKS5078)

0.0

32) pipD
( YP_008481578.1 )

putative secreted peptidase

NC_022221
(Salmonella enterica CDC1983-67)

0.0

33) I137_08925
( YP_008381254.1 )

peptidase

NC_021984
(Salmonella enterica S06004)

0.0

34) SeD_A1169
( YP_002215025.1 )

peptidase family C69

NC_011205
(Salmonella enterica CT_02021853)

0.0

35) SARI_01909
( YP_001570934.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

36) A464_1033
( YP_008321629.1 )

putative dipeptidase

NC_021870
(Salmonella bongori N268-08)

0.0

37) pipD
( YP_004729823.1 )

secreted peptidase

NC_015761
(Salmonella bongori NCTC 12419)

0.0

38) NT01EI_2654
( YP_002934057.2 )

peptidase, family C69

NC_012779
(Edwardsiella ictaluri 93-146)

4e-170

39) ETAC_11150
( YP_007629711.1 )

dipeptidase

NC_020796
(Edwardsiella tarda C07-087)

3e-162

40) ETAE_2361
( YP_003296407.1 )

hypothetical protein

NC_013508
(Edwardsiella tarda EIB202)

3e-162

41) ETAF_2133
( YP_005699731.1 )

dipeptidase

NC_017309
(Edwardsiella tarda FL6-60)

3e-162

42) EBL_c34440
( YP_006321011.1 )

putative dipeptidase A

NC_017910
(Escherichia blattae DSM 4481)

3e-157

43) BB2000_0871
( YP_008397427.1 )

exported peptidase

NC_022000
(Proteus mirabilis BB2000)

3e-114

44) PMI0803
( YP_002150564.1 )

exported peptidase

NC_010554
(Proteus mirabilis HI4320)

5e-114

45) BFO_1603
( YP_005014485.1 )

peptidase, C69 family

NC_016610
(Tannerella forsythia ATCC 43037)

6e-113

46) ASA_2511
( YP_001142290.1 )

dipeptidase

NC_009348
(Aeromonas salmonicida A449)

2e-111

47) B565_1522
( YP_004392174.1 )

Dipeptidase

NC_015424
(Aeromonas veronii B565)

4e-111

48) CCV52592_0344
( YP_001407372.1 )

C69 family peptidase

NC_009715
(Campylobacter curvus 525.92)

6e-111

49) A464_2157
( YP_008322752.1 )

putative dipeptidase

NC_021870
(Salmonella bongori N268-08)

6e-110

50) SBG_1830
( YP_004730679.1 )

dipeptidase

NC_015761
(Salmonella bongori NCTC 12419)

6e-110

51) HMPREF9137_0311
( YP_004328046.1 )

peptidase, C69 family

NC_015311
(Prevotella denticola F0289)

8e-110

52) MU9_3194
( YP_007506611.1 )

Putative dipeptidase

NC_020418
(Morganella morganii KT)

4e-106

53) ETAC_07950
( YP_007629071.1 )

Putative dipeptidase

NC_020796
(Edwardsiella tarda C07-087)

1e-105

54) ETAE_1728
( YP_003295778.1 )

dipeptidase

NC_013508
(Edwardsiella tarda EIB202)

1e-105

55) ETAF_1563
( YP_005699163.1 )

Putative dipeptidase

NC_017309
(Edwardsiella tarda FL6-60)

1e-105

56) CCC13826_1838
( YP_001465940.1 )

S-layer-RTX protein

NC_009802
(Campylobacter concisus 13826)

3e-103

57) SARI_00887
( YP_001569945.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

6e-102

58) ETAC_10745
( YP_007629630.1 )

dipeptidase-like protein

NC_020796
(Edwardsiella tarda C07-087)

3e-98

59) ETAE_2273
( YP_003296319.1 )

dipeptidase-like protein

NC_013508
(Edwardsiella tarda EIB202)

4e-98

60) Poras_1283
( YP_004442391.1 )

peptidase U34 dipeptidase

NC_015501
(Porphyromonas asaccharolytica DSM 20707)

6e-91

61) ETAF_2051
( YP_005699649.1 )

dipeptidase

NC_017309
(Edwardsiella tarda FL6-60)

2e-90

• Sequence Alignments

1) SU5_01725 in NC_017623


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3025),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

2) SeHA_C1204 in NC_011083


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3025),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

3) pipD in NC_016856


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

4) pipD in NC_017046


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

5) pipD in NC_016857


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

6) SBOV10071 in NC_022241


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

7) SPAB_02461 in NC_010102


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  799 bits (3024),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

8) SeSA_A1158 in NC_011094


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  798 bits (3022),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYANHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYA+HNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

9) SEEH1578_14695 in NC_021810


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

10) CFSAN002069_03550 in NC_021812


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

11) pipD in NC_003197


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

12) pipD in NC_016810


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

13) STMDT12_C11130 in NC_016860


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

14) pipD in NC_016863


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

15) SNSL254_A1189 in NC_011080


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 487/489 (99%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESAILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIES ILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

16) SN31241_21610 in NC_021902


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 487/489 (99%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESAILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIES ILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

17) STBHUCCB_19420 in NC_016832


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFSVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETF+VFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNTFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYN+FAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

18) TY21A_09290 in NC_021176


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFSVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETF+VFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNTFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYN+FAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

19) SE451236_11320 in NC_021820


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  796 bits (3013),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  9    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  68
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  69   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  128
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  129  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  188
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  189  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  248
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  249  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  308
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  309  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  368
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  369  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  428
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  429  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  488
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  489  KYHFSSTQP  497
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

20) CFSAN001921_11705 in NC_021814


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  796 bits (3013),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  9    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  68
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  69   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  128
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  129  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  188
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  189  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  248
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  249  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  308
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  309  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  368
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  369  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  428
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  429  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  488
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  489  KYHFSSTQP  497
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

21) SeAg_B1053 in NC_011149


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASSTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMAS+TLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

22) SEEB0189_14100 in NC_021844


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3011),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPIKKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPI KISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

23) CFSAN002050_11865 in NC_021818


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGKTFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEG TFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

24) pipD in NC_011294


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

25) CFSAN001992_06175 in NC_020307


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

26) pipD in NC_012125


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  5    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  64
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  65   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  124
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  125  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  184
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  185  ETGSGHQWLAVRLPTDSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  244
            ETGSGHQWLAVRLP+DSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  245  FDFHQAYSQDNKNDITYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  304
            FDFHQAYSQDNKND TYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  305  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  364
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  365  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  424
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  425  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  484
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  485  KYHFSSTQP  493
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

27) pipD in NC_003198


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFSVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETF+VFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNTFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYN+FAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

28) STU288_01800 in NC_021151


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQHLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQ+LLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

29) pipD in NC_004631


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFSVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETF+VFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNTFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYN+FAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

30) pipD in NC_011274


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  794 bits (3004),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDTIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITED+IESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEGETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNNYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRN+YQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

31) pipD in NC_016831


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  792 bits (2998),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/489 (99%), Positives = 487/489 (99%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEVETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSE ETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNNYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRN+YQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLAHRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLA+RLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

32) pipD in NC_022221


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  791 bits (2994),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/489 (99%), Positives = 486/489 (99%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGVKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQG KLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEVETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSE ETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNNYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRN+YQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLAHRLTNNIITTMTYRTDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLA+RLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

33) I137_08925 in NC_021984


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  791 bits (2995),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/489 (99%), Positives = 487/489 (99%), Gaps = 0/489 (0%)

Query  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  60
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTAVSEVETFPVFLTPITKISVAAVKN  300
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDT VSE ETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNNYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360
            ALRN+YQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSSTQP  489
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

34) SeD_A1169 in NC_011205


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  769 bits (2909),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/489 (99%), Positives = 488/489 (99%), Gaps = 0/489 (0%)

Query  32   MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQ  91
            MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHP+AFHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  92   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  151
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  152  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  211
            AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  212  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  271
            ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  272  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  331
            FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  332  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  391
            ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  392  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  451
            SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  452  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLArrltnnitttmtyrtDM  511
            QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNI TTMTYRTDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  512  KYHFSSTQP  520
            KYHFSSTQP
Sbjct  481  KYHFSSTQP  489

35) SARI_01909 in NC_010067


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  748 bits (2829),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/489 (92%), Positives = 474/489 (97%), Gaps = 0/489 (0%)

Query  1    MKLYFAFAVTLLGLGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHMVIHPISFHQ  60
            MK Y+AFAVTLLG+GKVIACTTLLVGNQASADGSFIIARNEDGSANNAKH VIHPI+FHQ
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGSAAL  120
            QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNG AAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIQTVILPVAHSARQGAKLLGDIIEQKGAGEGFGVAFIDTKEIWYL  180
            AADPYVTKTGITEDAI++VILPVA+SARQGAKLLGDIIEQKGAGEGFGVAFID+KEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADKYFVSANQGRLRRYDPNDKANYMASPTLVSFAKKQGLYDPAHGE  240
            ETGSGHQWLAVRLPAD YFVSANQGRLR+YDPND+ANYMASPTLVSFAKKQGLYDPA+GE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDNKIDITYNYPRVWTLQHRFNPHLDTAVSKGETFPVFLTPMTKINLEAIKN  300
            FDFHQAYSQDNK D TYNYPRVWTLQH+FNPHLDT VS GETFPVFLTP+TKI++ A+KN
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTPHDPYANHHPQEPWRPISVFRTQESHILQVRPGLPQAVGEVEYVAYGMPSL  360
            ALRNHYQGT+HDPYA+H+PQEPWRPISVFRTQESHILQVRP LPQA+G+VEY+AYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGMRHYQPGYDKGTDRASSDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420
            SVYLPYYQGMRHYQPG DKGTDRAS+DSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTAKQQHTMEQTYLRLYASHPKEAQHLLQNFEDKTMQNAQTLAHRLTNNIITKMTYNTDM  480
            QTAKQQ  MEQ+YLRLYASHPKEAQ+LLQNFEDKTMQNAQTLA+RLTNNIIT MTY TDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSGTQP  489
            KYHFS+TQP
Sbjct  481  KYHFSSTQP  489

36) A464_1033 in NC_021870


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  723 bits (2734),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/489 (87%), Positives = 468/489 (96%), Gaps = 0/489 (0%)

Query  1    MKMCFASAITLLNMSKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHMVIHPVSFNQ  60
            MK  +A A+TLL M+KVIACTTLLVGNQASADGSFIIARNEDGSANNAKH VIHP++F+Q
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEFKAHRNDFSWPLPEMAMRYTAIHDFDTDDNSMGEAGFNSAGVGMSATETIYNGRAAL  120
            QGE+KAHRN+FSWPLPE AMRYTAIHDFDT+DN+MGEAGFNSAGVGMSATETIYNGRAAL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKTGITEDAIQTVILPVAQSARQGARLLGNIIEQKGAGEGFGVAFIDTKEIWYL  180
            AADPYVTKTGITEDAI++VILPVAQSARQGA+LLG+IIEQKGAGEGFGVAFID+KEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADKYFVSANQGRLHRYDPHDKTNYMASPSLISFAEQQGLYDPAQGE  240
            ETGSGHQWLAVRLPAD YFVSANQGRL++YDP+D++NYMASP+L+SFA +QGLYDPA+GE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDSKIDVTYNYPRVWTLQHQFNPYLDTAVSEGGTFPVFLTPMAKISVAAVQN  300
            FDFHQAYSQD+K D TYNYPRVWTLQHQFNP LDT VSEG TFPVFLTP++KISVAAV+N
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTPHDPYTHDRPQEPWRPISVFRTQESHILQVRPGLPQAIGEVEYVAYGMPSL  360
            ALRNHYQGT+HDPY+ + PQEPWRPISVFRTQESHILQVRP LPQAIG+VEY+AYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGTRHYQPGYDKGTDRTSSDSTYWTFRTLQTLVMQDYNAFAPDVQRAWKTFEQ  420
            SVYLPYYQG RHYQPG DKGTDR+S+DSTYWTFRTLQTLVMQDYNAFAPDVQ+AWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTTKQQHTMEQAYLRLYTSHPKEAQRLLQHFEDKTMQNAQTLAHRLTNNIITAMTYNTDM  480
            QT+KQQ  MEQ+YLRLY+SHPKEAQRLLQ+FEDKTMQNAQTLA+RLTNNIIT+MTY TDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSGTQP  489
            KYHFS+TQP
Sbjct  481  KYHFSSTQP  489

37) pipD in NC_015761


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  722 bits (2732),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 424/489 (87%), Positives = 467/489 (96%), Gaps = 0/489 (0%)

Query  1    MKMYFASAITLLNMSKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHMVIHPVSFNQ  60
            MK Y+A A+TLL M+KVIACTTLLVGNQASADGSFIIARNEDGSANNAKH VIHP++F+Q
Sbjct  1    MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  61   QGEFKAHRNDFSWPLPEMAMRYTAIHDFDTDDNSMGEAGFNSAGVGMSATETIYNGRTAL  120
            QGE+KAHRN+FSWPLPE AMRYTAIHDFDT+DN+MGEAGFNSAGVGMSATETIYNGR+AL
Sbjct  61   QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  121  AADPYVTKMGITEDAIQTVILPVAQSARQGARLLGNIIEQKGAGEGFGVAFIDTKEIWYL  180
            AADPYVTK GITEDAI++VILPVAQSARQGA+LLG+IIEQKGAGEGFGVAFID+KEIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  181  ETGSGHQWLAVRLPADKYFVSANQGRLHRYDPHDKANYMASPSLISFAEQQGLYDPAQGE  240
            ETGSGHQWLAVRLPAD YFVSANQGRL++YDP+D+ANYMASP+L+SFA +QGLYDPA+GE
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE  240

Query  241  FDFHQAYSQDSKIDVTYNYPRVWTLQHQFNPHQDTAVSEGETFPVFLTPMAKISVAAVQN  300
            FDFHQAYSQD+K D TYNYPRVWTLQHQFNPH DT VSEGETFPVFLTP++KISVAAV+N
Sbjct  241  FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN  300

Query  301  ALRNHYQGTPHDPYTHDRPQEPWRPISVFRTQESHILQVRPGLPQAIGEVEYVAYGMPSL  360
            ALRNHYQGT+HDPY+ + PQEPWRPISVFRTQESHILQVRP LPQAIG+VEY+AYGMPSL
Sbjct  301  ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL  360

Query  361  SVYLPYYQGTCHYQPGYDKGTDRTSSDSTYWTFRTLQTLIMQDYNAFAPDVQRAWKTFEQ  420
            SVYLPYYQG  HYQPG DKGTDR+S+DSTYWTFRTLQTL+MQDYNAFAPDVQ+AWKTFEQ
Sbjct  361  SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ  420

Query  421  QTTKQQHTMEQAYLRLYTSHPKEAQRLLQRFEDKTMQNAQTLAHRLTNNIITAMTYNTDM  480
            QT+KQQ  MEQ+YLRLY+SHPKEAQRLLQ FEDKTMQNAQTLA+RLTNNIIT+MTY TDM
Sbjct  421  QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM  480

Query  481  KYHFSGTQP  489
            KYHFS+TQP
Sbjct  481  KYHFSSTQP  489

38) NT01EI_2654 in NC_012779


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  591 bits (2232),  Expect = 4e-170, Method: Compositional matrix adjust.
 Identities = 335/480 (70%), Positives = 414/480 (87%), Gaps = 0/480 (0%)

Query  9    AIATLCVGQAMACTTILVGNQATTDGSFIAARNEDYSANNAKHMVIHPAAHNQHGVFKSH  68
            A++ L +G+ +ACTT+LVGNQA++DGSFI ARNED SANNAKH VIHP A +Q+G +K+H
Sbjct  8    AVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAH  67

Query  69   GNDFTYPLPKEALRYTAIHDFDTQDKSMGEAGFNSAGVGMTATETLYNGQPALKADPYVE  128
             N+F+ PLP  A+RYTAIHDFDT+D++MGEAGFNSAGVGM+ATET+YNG++AL ADPYV 
Sbjct  68   RNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVT  127

Query  129  KTGITEDAIQTVVLPRIHSAREGVELLGKIIEQQGAGEGFGVAFVDQHDLWYLETGSGHQ  188
            KTGITEDAI++V+LP  +SAR+G  LLG IIEQ+GAGEGFGVAF+D  ++WYLETGSGHQ
Sbjct  128  KTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQ  187

Query  189  WMATRLPADKYLISANQGRLRQYDPKDTANYLGSPTLISFAEQHGLYRPKDGAFDFHKAY  248
            W+A RLPAD Y++SANQGRLR+YDP+D ANY++SPTL+SFA ++GLY P  G FDFH+AY
Sbjct  188  WLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAY  247

Query  249  SQDVENDVTYNYPRVWTLQHMFNPQLKTTITDGKNFPVFLTPAKKISIADVELALRNHYQ  308
            SQD  ND TYNYPRVWTLQH FNP+L T +++G  FPVFLTP  KIS+A V  ALRNHYQ
Sbjct  248  SQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQ  307

Query  309  GTTHDPYANNNPKEPYRPISVFRTQESHILQVRPHLPKAIGEVEYVAFGMSALSVYIPYY  368
            GT+HDPYA++NP+EP RPISVFRTQESHILQVRP LP+AIG+VEY+A+GM++LSVY+PYY
Sbjct  308  GTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYY  367

Query  369  QGIEHYLPGYDKGSDRASDDSVNWKFRTLQTLVMQDYNAYAPDVQRAYSTFEQQTAQRQQ  428
            QG+ HY PG DKG+DRAS+DS  W FRTLQTLVMQDYNA+APDVQ+A  TFEQQTA++Q 
Sbjct  368  QGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQY  427

Query  429  NMEQEYLTLYKSQPKKARLLLQQFEDQTMQDALKLTDQLTSQVVTKMTHATDMKYHFEGA  488
            +MEQ YL LY S+PK A+ LLQ+FED+TMQ+A  L+ +LT++++T MT  TDMKYHF ++
Sbjct  428  KMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

39) ETAC_11150 in NC_020796


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  565 bits (2133),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 337/474 (72%), Positives = 413/474 (88%), Gaps = 0/474 (0%)

Query  15   VGQAMACTTILVGNQATTDGSFIAARNEDYSANNAKHMVIHPAAHNQHGVFKSHGNDFTY  74
            +G+ +ACTT+LVGNQA++DGSFI ARNED SANNAKH VIHP A +Q+G +K+H N+F+ 
Sbjct  14   MGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSW  73

Query  75   PLPKEALRYTAIHDFDTQDKSMGEAGFNAAGVGMTATETIYNGQPALKADPYVEKTGITE  134
            PLP  A+RYTAIHDFDT+D++MGEAGFN+AGVGM+ATETIYNG++AL ADPYV KTGITE
Sbjct  74   PLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITE  133

Query  135  DAIQTVVLPRIHSAREGVELLGKIIEQKGAGEGFGVAFVDQHDLWYLETGSGHQWMATRL  194
            DAI++V+LP  +SAR+G  LLG IIEQKGAGEGFGVAF+D  ++WYLETGSGHQW+A RL
Sbjct  134  DAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRL  193

Query  195  PADKYLVSANQGRLRQYDPKDTANYLGSPTLISFAEQHGLYNPKDGAFDFHKAYSQDVEN  254
            PAD Y+VSANQGRLR+YDP+D ANY++SPTL+SFA ++GLY+P  G FDFH+AYSQD  N
Sbjct  194  PADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKN  253

Query  255  DVTYNYPRVWTLQHMFNPQLKTTITDGKNFPVFLTPAKKISIADVEQALRNHYQGTAHDP  314
            D TYNYPRVWTLQH FNP+L T +++G  FPVFLTP  KIS+A V +ALRNHYQGT+HDP
Sbjct  254  DTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDP  313

Query  315  YANNNPQEPYRPISVFRTQESHILQVRPHLPTAIGEVEYVAFGMSALSVYVPYYQGIEHY  374
            YA++NPQEP RPISVFRTQESHILQVRP LP AIG+VEY+A+GM++LSVY+PYYQG+ HY
Sbjct  314  YASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHY  373

Query  375  LPGYDKGSDRASDDSVNWKFRTLQTLVMQDYNAYAPDVQRAYNAFEQQTALRQQSMEQEy  434
             PG DKG+DRAS+DS  W FRTLQTLVMQDYNA+APDVQ+A ++FEQQTA +Q  MEQ Y
Sbjct  374  QPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSY  433

Query  435  lklykaqpkkaqqllqqFEDKTMQDALTLTDQLTSQVVTKMTHATDMKYHFEGA  488
            L+LY ++PK AQ+LLQ+FEDKTMQ+A TL+ +LT++++T MT  TDMKYHF ++
Sbjct  434  LRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

40) ETAE_2361 in NC_013508


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  565 bits (2132),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 337/474 (72%), Positives = 413/474 (88%), Gaps = 0/474 (0%)

Query  15   VGQAMACTTILVGNQATTDGSFIAARNEDYSANNAKHMVIHPAAHNQHGVFKSHGNDFTY  74
            +G+ +ACTT+LVGNQA++DGSFI ARNED SANNAKH VIHP A +Q+G +K+H N+F+ 
Sbjct  14   MGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSW  73

Query  75   PLPKEALRYTAIHDFDTQDKSMGEAGFNAAGVGMTATETIYNGQPALKADPYVEKTGITE  134
            PLP  A+RYTAIHDFDT+D++MGEAGFN+AGVGM+ATETIYNG++AL ADPYV KTGITE
Sbjct  74   PLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITE  133

Query  135  DAIQTVVLPRIHSAREGVELLGKIIEQKGAGEGFGVAFVDQHDLWYLETGSGHQWMATRL  194
            DAI++V+LP  +SAR+G  LLG IIEQKGAGEGFGVAF+D  ++WYLETGSGHQW+A RL
Sbjct  134  DAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRL  193

Query  195  PADKYLVSANQGRLRQYDPKDTANYLGSPTLISFAEQHGLYNPKDGAFDFHKAYSQDVEN  254
            PAD Y+VSANQGRLR+YDP+D ANY++SPTL+SFA ++GLY+P  G FDFH+AYSQD  N
Sbjct  194  PADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKN  253

Query  255  DVTYNYPRVWTLQHMFNPQLKTTITDGKNFPVFLTPAKKISIADVEQALRNHYQGTAHDP  314
            D TYNYPRVWTLQH FNP+L T +++G  FPVFLTP  KIS+A V +ALRNHYQGT+HDP
Sbjct  254  DTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDP  313

Query  315  YANNNPQEPYRPISVFRTQESHILQVRPHLPTAIGEVEYVAFGMSALSVYVPYYQGIEHY  374
            YA++NPQEP RPISVFRTQESHILQVRP LP AIG+VEY+A+GM++LSVY+PYYQG+ HY
Sbjct  314  YASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHY  373

Query  375  LPGYDKGSDRASDDSVNWKFRTLQTLVMQDYNAYAPDVQRAYNAFEQQTALRQQSMEQEy  434
             PG DKG+DRAS+DS  W FRTLQTLVMQDYNA+APDVQ+A ++FEQQTA +Q  MEQ Y
Sbjct  374  QPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSY  433

Query  435  lklykaqpkkaqqllqqFEDKTMQEALTLTDQLTSQVVTKMTHATDMKYHFEGA  488
            L+LY ++PK AQ+LLQ+FEDKTMQ+A TL+ +LT++++T MT  TDMKYHF ++
Sbjct  434  LRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

41) ETAF_2133 in NC_017309


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  565 bits (2132),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 337/474 (72%), Positives = 413/474 (88%), Gaps = 0/474 (0%)

Query  15   VGQAMACTTILVGNQATTDGSFIAARNEDYSANNAKHMVIHPAAHNQHGVFKSHGNDFTY  74
            +G+ +ACTT+LVGNQA++DGSFI ARNED SANNAKH VIHP A +Q+G +K+H N+F+ 
Sbjct  14   MGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSW  73

Query  75   PLPKEALRYTAIHDFDTQDKSMGEAGFNAAGVGMTATETIYNGQPALKADPYVEKTGITE  134
            PLP  A+RYTAIHDFDT+D++MGEAGFN+AGVGM+ATETIYNG++AL ADPYV KTGITE
Sbjct  74   PLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITE  133

Query  135  DAIQTVVLPRIHSAREGVELLGKIIEQKGAGEGFGVAFVDQHDLWYLETGSGHQWMATRL  194
            DAI++V+LP  +SAR+G  LLG IIEQKGAGEGFGVAF+D  ++WYLETGSGHQW+A RL
Sbjct  134  DAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRL  193

Query  195  PADKYLVSANQGRLRQYDPKDTANYLGSPTLISFAEQHGLYNPKDGAFDFHKAYSQDVEN  254
            PAD Y+VSANQGRLR+YDP+D ANY++SPTL+SFA ++GLY+P  G FDFH+AYSQD  N
Sbjct  194  PADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKN  253

Query  255  DVTYNYPRVWTLQHMFNPQLKTTITDGKNFPVFLTPAKKISIADVEQALRNHYQGTAHDP  314
            D TYNYPRVWTLQH FNP+L T +++G  FPVFLTP  KIS+A V +ALRNHYQGT+HDP
Sbjct  254  DTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDP  313

Query  315  YANNNPQEPYRPISVFRTQESHILQVRPHLPTAIGEVEYVAFGMSALSVYVPYYQGIEHY  374
            YA++NPQEP RPISVFRTQESHILQVRP LP AIG+VEY+A+GM++LSVY+PYYQG+ HY
Sbjct  314  YASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHY  373

Query  375  LPGYDKGSDRASDDSVNWKFRTLQTLVMQDYNAYAPDVQRAYNAFEQQTALRQQSMEQEy  434
             PG DKG+DRAS+DS  W FRTLQTLVMQDYNA+APDVQ+A ++FEQQTA +Q  MEQ Y
Sbjct  374  QPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSY  433

Query  435  lklykaqpkkaqqllqqFEDKTMQEALTLTDQLTSQVVTKMTHATDMKYHFEGA  488
            L+LY ++PK AQ+LLQ+FEDKTMQ+A TL+ +LT++++T MT  TDMKYHF ++
Sbjct  434  LRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

42) EBL_c34440 in NC_017910


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  548 bits (2069),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 321/460 (70%), Positives = 389/460 (85%), Gaps = 0/460 (0%)

Query  29   QASADGSYIVARNEDYAADNAKHMVIHPAAHNQQGVFKSHANDFTWPLPKEALRYTAIHD  88
            QASADGS+I+ARNED +A+NAKH VIHP A +QQG +K+H N+F+WPLP  A+RYTAIHD
Sbjct  28   QASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAMRYTAIHD  87

Query  89   FDTAGKSMGEVGFNGAGVGLTSTETIYNGAAALKADPYVEKTGITEDAIQTVVLPYIHSA  148
            FDT +++MGE GFN+AGVG+++TETIYNG AAL ADPYV KTGITEDAI++V+LP  +SA
Sbjct  88   FDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSA  147

Query  149  REGVELLGKIIEQKGAGEGFGVAFVDAKDVWYLESGSGHQWMAARLPNDRYFVSANQGRL  208
            R+G  LLG IIEQKGAGEGFGVAF+D+K++WYLE+GSGHQW+A RLP D YFVSANQGRL
Sbjct  148  RQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRL  207

Query  209  QHYDAKDTANYLASPTLVSFAREHGLYHPESGEFNFHTAYSQDVPNDVTYNYPRVWTLQH  268
            +HYD++D ANY+ASPTLVSFA+ +GLY+P  GEF+FH AYSQD  ND TYNYPRVWTLQH
Sbjct  208  RHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYNYPRVWTLQH  267

Query  269  KFNPGLTTTVEQGKAFPVFVKPASKISVNDVKQALRNHYDGTAHDPYTKVNPKEPWRPIS  328
            +FNP L T V +G +FPVF+ P +KISV  VK+ALRNHY+GT+HDPY+  NP+EPWRPIS
Sbjct  268  QFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQEPWRPIS  327

Query  329  VFRTQESHILQVRPNLPAAIGEVEYVAYGMSALGVYVPYYQGISHYLPGYDKGTDTASSD  388
            VFRTQESHILQVRP+LP AIG+VEY+AYGM++L+VY+PYYQG+ HY PG DKGTD AS+D
Sbjct  328  VFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASND  387

Query  389  SVNWKYRTLQTLVMQDYNHYAPDVQKAYLDFEQQTAKGQQAMEQQYLAIYkkqpqqaqkl  448
            S  W +RTLQTLVMQDYN +APDVQ A   FEQQTAK Q  MEQ YL +Y  +P++AQ+L
Sbjct  388  STYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRL  447

Query  449  lqDFEDKTMQGALDLTETLTRQVITKMTKATDNKYHFEGA  488
            LQ+FEDKTMQ A  L+  LT ++IT MT  TD KYHF ++
Sbjct  448  LQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

43) BB2000_0871 in NC_022000


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  405 bits (1524),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 236/477 (50%), Positives = 340/477 (72%), Gaps = 9/477 (1%)

Query  9    IALSINIALVSSALACTTLLAGSEATNDGSLIVARSADSDALKAQHFVIHPAKSNQTGIY  68
            +A+++ +  ++  +ACTTLL G++A+ DGS+I+AR+ D+ A +A+H VIHP   +Q G Y
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEY  64

Query  69   STQAHHGANNFTYPLPKHSLRYTTVPNWKTQLH--GATGFNELGVGVSGTESIFASPKAL  126
             ++     NNF+ PLP  ++RYT++ +  T+ +  G +GFN  GVG+S+TE+I+ +  AL
Sbjct  65   KAHR----NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  127  AFDPYVEDTGITEDDIPDILLSRAKTAREAIELLGNIIETQGAGEGFGVAVVDKNEVWYL  186
            A DPYV  TGITED I  ++L+ A++AR++  LLG+IIE +GAGEGFGVA +D +E+WYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  187  ETGTGHQWMAQKLPKDKYFATGNQGRLQAYHIDSNDN-LGSKNLVEFAIEKGLYDPATDG  245
            ETG+GHQW+A +LP D YF ++NQGRL+ Y+ + N N ++S  LV FA  +GLYDPA  G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  246  EFNFSKAYTRDDERDLTYNYPRVWVIQQQFNPSLKQNVADGRQFAPMLTPEKKVSVEDAK  305
            EF+F +AY++D+  D TYNYPRVW +Q+QFNP L   V++G  F+  LTP  K+SV   K
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  306  AMLRNHFDGTEHDPYTNGLNGNEPWRPISVFRTYESHVMQVRPELPQEIGEVTYVGLGMA  365
              LRNH++GT HDPY+ + N +EPWRPISVFRT ESH++QVRP LPQ IG+V Y++ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  DLTAFVPYYSGLKAYPQHYAIGTDKADNDSIYWKYRKLQTLVMTDYPQFAPIVKKAYQEW  425
             L+ ++PYY G++ Y      GTD+A NDS YW +R LQTLVM DY  FAP V+ A +  
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAKTALEQKEMEANYLSLSKKNKAAADNMLNEFNLRVMADAEQLTENLTNQLFTLKT  482
            E +TA +Q  ME +YL L   +   A+ +L++F+ + M +A+ L+  LTN+++T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

44) PMI0803 in NC_010554


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  405 bits (1522),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 234/477 (50%), Positives = 340/477 (72%), Gaps = 9/477 (1%)

Query  13   IALSINIALVSSALACTTLLAGSEATNDGSLIVARSADSDALKAQHFVIHPAKNNQTGIY  72
            +A+++ +  ++  +ACTTLL G++A+ DGS+I+AR+ D+ A +A+H VIHP   +Q G Y
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEY  64

Query  73   STQAHHGANSFTYPLPKHSLRYTTVPNWKTQLH--GATGFNELGVGVSGTESIFASPKAL  130
             ++     N+F+ PLP  ++RYT++ +  T+ +  G +GFN  GVG+S+TE+I+ +  AL
Sbjct  65   KAHR----NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  131  AFDPYVEDTGITEDDIPDILLSRAKTAREAIELLGNIIETQGAGEGFGVAVVDKNEVWYL  190
            A DPYV  TGITED I  ++L+ A++AR++  LLG+IIE +GAGEGFGVA +D +E+WYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  191  ETGTGHQWMAQKLPKDKYFATGNQGRLQAYHTDSNDN-LGSKNLVEFAIEKGLYDPATDG  249
            ETG+GHQW+A +LP D YF ++NQGRL+ Y+ + N N ++S  LV FA  +GLYDPA  G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  250  EFNFSKAYTRDDERDLTYNYPRVWVIQQQFNPSLKQNVADGRQFAPMLTPEKKVSVEDAK  309
            EF+F +AY++D+  D TYNYPRVW +Q+QFNP L   V++G  F+  LTP  K+SV   K
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  310  AMLRNHFDGTEHDPYTNGLNGNEPWRPISVFRTYESHVMQVRPELPQEIGEVTYVGLGMA  369
              LRNH++GT HDPY+ + N +EPWRPISVFRT ESH++QVRP LPQ IG+V Y++ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  370  DLTAFVPYYSGLKAYPQHYAIGTDKADNDSIYWKYRKLQTLVMTDYPQFAPIVKKAYQEW  429
             L+ ++PYY G++ Y      GTD+A NDS YW +R LQTLVM DY  FAP V+ A +  
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  430  EAKTALEQKEMEANYLSMSKKNKAAADNMLNEFNLRVMADAEQLTENLTNQLFTLKT  486
            E +TA +Q  ME +YL +   +   A+ +L++F+ + M +A+ L+  LTN+++T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

45) BFO_1603 in NC_016610


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  401 bits (1508),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 221/469 (48%), Positives = 341/469 (73%), Gaps = 3/469 (0%)

Query  16   ECTTVIVGNKMTDDGSMIVARSEDWNTMFAKNLEIYEDTAEGPETFVARDSAFRCELPRE  75
             CTT++VGN+ + DGS I+AR+ED ++  AK+  I   + +    + A+ + F   LP  
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  76   ALGYTALAPYHLPGH-WGSAGFNTAGVGMSATESIFSNEKALQADP-LVEDGVAENSVFN  133
            A+ YTA+  ++  ++  G AGFN+AGVGMSATE+I++   AL ADP +   G++E+++ +
Sbjct  79   AMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIES  138

Query  134  IVLPYVRTAREGVRRLGELIERHGIAEGFGIGFVDDSEIWYLETACGHRWLACRMPEDKY  193
            ++LP  ++AR+G + LG++IE+ G +EGFG++F+D  EIWYLET+ GH+WLA R+P D Y
Sbjct  139  VILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSY  198

Query  194  FVTGNQSRFRKYDPNDTEHYMASADLIEFAREHGLYDPAKGEFDFHEAYARDIELDTTYN  253
            FV++NQ+R+R YDPND  +YMAS+ L+ FA+ +GLYDPA+GEFDFH+AY++D   DTTYN
Sbjct  199  FVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYN  258

Query  254  YPRVWGLQAMFSPQIKNDVAR-NTFPVFAEASKPLSLDDIRRAFRFHYQGTEHDPYLHRN  312
            YPRVW LQ  F+P++   V+  +TFPVF  +   +S+  ++ A+R HYQGT HDPY  +N
Sbjct  259  YPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHN  318

Query  313  PKEKYRPVSIFRTTQTHILHVRPELPQAIGRVDYMSMGMAVLGVFLPLYQGITSYPEAYT  372
            P+E  RP+S+FRT ++HIL+VRP LPQAIG V+Y++ GM+ L+V+LP YQG+  Y  +  
Sbjct  319  PQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDD  378

Query  373  KGTNRSSADSAYWKFRKVQTLGMVDFNRYAPLIQSTYSRFEAETAQRQCEMEEQYLQIYK  432
            KGT+R+S DS+YW FR +QTL M D+N +AP +Q +   FE +TA++Q  ME+ YL++Y 
Sbjct  379  KGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYA  438

Query  433  AQPIRARELLQSFSDKMLEAALDVTDKLTEKLFTCLAEDIQAEYRFAGA  481
            ++P  A+ LLQ+F DK ++ A  ++ +LT++++T ++   +  Y+F+++
Sbjct  439  SHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

46) ASA_2511 in NC_009348


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  396 bits (1488),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 238/477 (50%), Positives = 342/477 (72%), Gaps = 9/477 (1%)

Query  9    VALSINLALFSSAFACTTLLVGSEASTDGSMMVARSADSDALKAQHFVIHPAKQGQSGVH  68
            +A+++ L   +  +ACTTLLVG++AS+DGS ++AR+ D+ A +A+H VIHP    Q G  
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEY  64

Query  69   SSKAHNGANDFSYPLPKNALRYTTVPNWKTQLH--GATGFNEKGVGVSGTESIFASPEAL  126
              KAH   N+FS PLP  A+RYT++ +  T+ +  G +GFN  GVG+S+TE+I+ +  AL
Sbjct  65   --KAHR--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  127  AFDPYVEDKGITEDDIPDVLLSRATSAREAVALLGNIIETLGAGEGFGVAVVDDNELWYL  186
            A DPYV   GITED I  V+L+ A SAR++  LLG+IIE  GAGEGFGVA +D +E+WYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  187  ETATGHHWMAQRLPKDQYFASGNQGRLQHYDPK-SADMMGSKNLVEFATEKGLYQPQKDG  245
            ET++GH+W+A RLP D YF S+NQGRL+HYDP+ +A+ M+S  LV FA  +GLY+P + G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  246  TFNFSKAYTRDDERDRTYNDPRVWTIQQMFNPSLKQTVDAGRQFPVTLTPEKKMTLEEVK  305
             F+F +AY++D+  D TYN PRVWT+Q+ FNP L   V  G  FPV LTP  K+++  VK
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  306  AVLRNHYDGTEHDPYGKGLNGQEPWRPISVFRTYEAHVMQVRPWMPREVGEVTYVGLGMA  365
              LRNHY+GT HDPY+ + N QEPWRPISVFRT E+H++QVRP +P+ +G+V Y++ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  DLTAFVPYYSGLEAYPAHYALGSDKADSDSIYWKYRKLQTLVMTDYPKLAPMVKLAYQSW  425
             L+ ++PYY G+  Y +    G+D+A +DS YW +R LQTLVM DY  +AP V+ A ++ 
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAKIANEQKEMEASYLKTVKADKAAANRMLNDFNLRVMKDAEALTDDLTNQIFTVRT  482
            E + A++Q  ME SYL+   ++   A+R+L++F+ + M++A++L+  LTN+I+T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

47) B565_1522 in NC_015424


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  395 bits (1485),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 231/477 (49%), Positives = 340/477 (72%), Gaps = 9/477 (1%)

Query  9    VALSINLALFSSAFACTTLLVGSEASADGSMMVARSADSDALKAQHFVIHPAKQGQSGMH  68
            +A+++ L   +  +ACTTLLVG++ASADGS ++AR+ D+ A +A+H VIHP    Q G  
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQG--  62

Query  69   SSKAHNGANDFRYPLPKNSLRYTTVPNWKTQLH--GATGFNEKGVGVSGTESIFASPEAL  126
              KAH   N+F  PLP  ++RYT++ +  T+ +  G +GFN  GVG+S+TE+I+ +  AL
Sbjct  63   EYKAHR--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  127  AFDPYVEEKGITEDDIPDVLLSGSTSAREAVALLGNIIETIGAGEGFGVAVVDDNELWYL  186
            A DPYV   GITED I  V+L+ + SAR++  LLG+IIE  GAGEGFGVA +D +E+WYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  187  ETATGHHWMAQRLPKNHYFATGNQGRLQQYDPA-SADMMGSKNLIEFATEKGLYHPQKEG  245
            ET++GH+W+A RLP + YF ++NQGRL++YDP  +A+ M+S  L+ FA  +GLY+P + G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  246  AFNFSKAYTRDDERDRTYNDPRVWTIQQMFNPSLKQAVDAGRQFPVTLSPEKKMTLEEVK  305
             F+F +AY++D+  D TYN PRVWT+Q+ FNP L   V  G  FPV L+P  K+++  VK
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  306  AVLRNHYDGTEHDPYSKGLNGQEPWRPVSVFRTYESHVMQVRPWMPREVGEVTYVGLGMA  365
              LRNHY+GT HDPY+ + N QEPWRP+SVFRT ESH++QVRP +P+ +G+V Y++ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  DLTAFVPYYSGLEAYPAHYAMGSDKADSDSIYWKYRKLQTLIMTDYPKLAPMVKQAYQSW  425
             L+ ++PYY G+  Y +    G+D+A +DS YW +R LQTL+M DY  +AP V++A ++ 
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAKIAKEQKEMEANYLKTVKTDKVAANSMLNDFNLRVMQEAETLTEDLTNQIFTVRT  482
            E + AK+Q  ME +YL+   ++   A+ +L++F+ + MQ+A+TL+  LTN+I+T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

48) HMPREF0659_A6300 in NC_014370


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  395 bits (1484),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 223/469 (48%), Positives = 342/469 (73%), Gaps = 3/469 (0%)

Query  10   ECTTIIIGQEQTADGSMIVARSEDWDAMEAKNYEIFEDTDNGPREFVAKDSPFRCELPEK  69
             CTT+++G++ +ADGS I+AR+ED  A +AK+  I   + +   E+ A  + F   LPE 
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  70   ALGYSALSPYNLHGH-WGSAGFNTAGVGMSATESIFSSDEVLKHDP-LVENGVAENSVFN  127
            A+ Y+A+  ++ +++  G AGFN+AGVGMSATE+I+++   L  DP +   G++E+++ +
Sbjct  79   AMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIES  138

Query  128  ITLPYVHTAREGVERLGMLIEKYGIAEGFGIGFVDSKEIWYLETACGHRWLACRMPKDQY  187
            + LP  ++AR+G   LG +IE+ G +EGFG++F+DSKEIWYLET+ GH+WLA R+P D Y
Sbjct  139  VILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSY  198

Query  188  FVTGNQSRFRTYDPNDKENYLASADLIEFAEKHGLYNPAQGAFDFHEAYARDIKLDTTYN  247
            FV++NQ+R+R YDPND+ NY+AS+ L+ FA K+GLY+PA+G FDFH+AY++D K DTTYN
Sbjct  199  FVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYN  258

Query  248  YPRVWGLQQFFSPEIKNDVTK-NTFPVFAKAAHKVTLTELRTAFRFHYDNTEHDPYLNSN  306
            YPRVW LQ+ F+P++   V+  +TFPVF  +  K++++ ++ A+R HY+ T HDPY + N
Sbjct  259  YPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHN  318

Query  307  PKEPYRPVSIFRTTQTHLLQVRPELPQAIGCVNYVAMGMADLGVFLPLYQGITSYPEAYT  366
            P+EP RP+S+FRT ++H+LQVRP LPQAIG V+Y+A GM+ L+V+LP YQG+  Y  +  
Sbjct  319  PQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDD  378

Query  367  KGNGESSDDSAYWKFRKIMVLGMTNYNKYAPIIKEAYAKFEAETDQRQREMEEEYLRIYK  426
            KG + +S+DS+YW FR +  L M +YN +AP +++A   FE +T ++Q  ME+ YLR+Y 
Sbjct  379  KGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYA  438

Query  427  TQPLHAQDLLQEFSDKILNSALDLADRLQEKLFTLMTQDIQQEYLFHGA  475
            ++P +AQ LLQ+F DK +++A  LA RL ++++T MT   +  Y F ++
Sbjct  439  SHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

49) CCV52592_0344 in NC_009715


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  394 bits (1483),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 244/479 (51%), Positives = 348/479 (73%), Gaps = 13/479 (2%)

Query  4    KFLASAAVIGTLFCGSALACTTILVGNEASNDGSLLIARSADSKAIKAQLFLIHPKKINQ  63
            K+LA A  +  +  G  +ACTT+LVGN+AS DGS++IAR+ D+ A +A+  +IHP  ++Q
Sbjct  3    KYLAFAVTLLGM--GKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ  60

Query  64   SGTYSSKAHDGASDFTYPLPKDSMRYTTIAN--SHTKLHGAVGYNEAGVGISGTETIYAK  121
             G Y  KAH   ++F+ PLP  +MRYT+I +  ++ +  G  G+N AGVG+S+TETIY  
Sbjct  61   QGEY--KAHR--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNG  116

Query  122  DELLKIDPYNEATGITEDDIPDVILPRMKSAKEGVKLLGQIVESTGAGEGFGVVFVDKDE  181
               L  DPY   TGITED I  VILP  +SA++G KLLG+I+E  GAGEGFGV F+D  E
Sbjct  117  RAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKE  176

Query  182  IWYFETGTGHQWMAVKLPKDEYFVSGNQGRLQNYK-ENDPNFMGSKNLINFAKEHGAYDP  240
            IWY+ETG+GHQW+AV+LP D YFVS+NQGRL++Y  ++++N+M+S  L++FAK +G YDP
Sbjct  177  IWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDP  236

Query  241  SKDGEFHFGKAYTRNDERDVTYNYPRVFW-VQQMFNPSFKQDIADGPNFPVFMKPEKKLS  299
            ++ GEF+F +AY++++  D TYNYPRV W +Q+ FNP +   +++G  FPVF+ P  K+S
Sbjct  237  AR-GEFDFHQAYSQDNKNDTTYNYPRV-WTLQHQFNPHLDTVVSEGETFPVFLTPITKIS  294

Query  300  VNDLKTVLRAHYDGTKYDPYVSKDEESGIYRAISVFRTYESHVMQVRPWLPQEIGRVTYV  359
            V  +K  LR HY+GT  DPY S + +    R+ISVFRT ESH++QVRP LPQ IG V Y+
Sbjct  295  VAAVKNALRNHYQGTSHDPYASHNPQEP-WRPISVFRTQESHILQVRPKLPQAIGNVEYI  353

Query  360  ALGMSDLSVYLPYYYGLDGFIDGYDKGSYKADDESIYWTYRKLQTLVMMDYNKYASIVKA  419
            A GM+ LSVYLPYY G+  +  G DKG+ +A ++S YWT+R LQTLVM DYN +A+ V+ 
Sbjct  354  AYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQH  413

Query  420  AYKKFEDELAVKQAKFEDEYVkiykkdkkkankLLNEFSLKTMKEAKALTQDLTNQIFT  478
            A K FE++ A +Q K E+ Y+++Y  + K A++LL++F  KTM++A++L++ LTN+I+T
Sbjct  414  AWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIIT  472

50) SBG_1830 in NC_015761


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  391 bits (1471),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 234/477 (50%), Positives = 348/477 (73%), Gaps = 9/477 (1%)

Query  9    LALSINLAFISSGFSCTTLLVGNEASSDGSMIVARSADSDAMKAQHFIIHPARHNQTGMY  68
            LA+++ L  ++  ++CTTLLVGN+AS+DGS I+AR+ D+ A +A+H +IHP   +Q G Y
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEY  64

Query  69   STKAHNGANDFTWPLPKESLRYTTVPNWKTQLH--GATGFNEAGVGVSGTESIFASPKAL  126
              KAH   N+F+WPLP  ++RYT++ +  T+ +  G +GFN AGVG+S+TE+I+ +  AL
Sbjct  65   --KAHR--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  127  AFDPYVEDKGITEDDIPDILLSQTKTAREAVALLGHIIETvgagegfgvavvDDNEIWYL  186
            A DPYV   GITED I  ++L+ +++AR++  LLG+IIE  GAGEGFGVA +D +EIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  187  ETATGHQWMAQRLPANQYFATGNQGRLQDYDPKD-PNVMGSKSLVTFATEKGLYHPQNEG  245
            ET++GHQW+A RLPA+ YF ++NQGRL++YDP+D +N M+S +LV+FA  +GLY+P   G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  246  KFNFSKVYTRDDERDRTYNDPRVWTIQQQFNPSVKQDMTAGRHFPVFMTPEKKMTLDDVK  305
             F+F + Y++D+  D TYN PRVWT+Q+QFNP +   ++ G  FPVF+TP  K+++  VK
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  306  DVLRNHYEGTKHDPYSNGLNGKEPWRPVSVFRTYEAHVMQVRPWLPKEIGEVTYIGLGMA  365
            + LRNHY+GT HDPY+ + N +EPWRP+SVFRT E+H++QVRP LP+ IG+V YI+ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  DLTAFVPYYSGLKAYPANYAMGTDKADNQSIYWKYRKLQTLTMTDYPKLAPVVKKAYAEW  425
             L+ ++PYY G++ Y +    GTD+A N+S YW +R LQTL M DY  +AP V+ A    
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAKVAKEQQEVETEYLTMAKTNKDAADKMLNDFNLQVMADAEKLTETLTNQLFTIRT  482
            E + AK+Q  +E  YL +  ++   A+++L++F+ + M +A+ L+  LTN+++T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

51) A464_2157 in NC_021870


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  391 bits (1471),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 234/477 (50%), Positives = 348/477 (73%), Gaps = 9/477 (1%)

Query  9    LALSINLAFISSGFSCTTLLVGNEASSDGSMIVARSADSDAMKAQHFIIHPARHNQTGMY  68
            LA+++ L  ++  ++CTTLLVGN+AS+DGS I+AR+ D+ A +A+H +IHP   +Q G Y
Sbjct  5    LAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEY  64

Query  69   STKAHNGANDFTWPLPKESLRYTTVPNWKTQLH--GATGFNEAGVGVSGTESIFASPKAL  126
              KAH   N+F+WPLP  ++RYT++ +  T+ +  G +GFN AGVG+S+TE+I+ +  AL
Sbjct  65   --KAHR--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL  120

Query  127  AFDPYVEDKGITEDDIPDILLSQTKTAREAVALLGHIIETvgagegfgvavvDDNEIWYL  186
            A DPYV   GITED I  ++L+ +++AR++  LLG+IIE  GAGEGFGVA +D +EIWYL
Sbjct  121  AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL  180

Query  187  ETATGHQWMAQRLPANQYFATGNQGRLQDYDPKD-PNVMGSKSLVTFATEKGLYHPQNEG  245
            ET++GHQW+A RLPA+ YF ++NQGRL++YDP+D +N M+S +LV+FA  +GLY+P   G
Sbjct  181  ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-G  239

Query  246  KFNFSKVYTRDDERDRTYNDPRVWTIQQQFNPSVKQDMTAGRHFPVFMTPEKKMTLDDVK  305
             F+F + Y++D+  D TYN PRVWT+Q+QFNP +   ++ G  FPVF+TP  K+++  VK
Sbjct  240  EFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVK  299

Query  306  DVLRNHYEGTKHDPYSNGLNGKEPWRPVSVFRTYEAHVMQVRPWLPKEIGEVTYIGLGMA  365
            + LRNHY+GT HDPY+ + N +EPWRP+SVFRT E+H++QVRP LP+ IG+V YI+ GM+
Sbjct  300  NALRNHYQGTSHDPYA-SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  DLTAFVPYYSGLKAYPANYAMGTDKADNQSIYWKYRKLQTLTMTDYPKLAPVVKKAYAEW  425
             L+ ++PYY G++ Y +    GTD+A N+S YW +R LQTL M DY  +AP V+ A    
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAKVAKEQQEVETEYLTMAKTNKDAADKMLNDFNLQVMADAEKLTETLTNQLFTIRT  482
            E + AK+Q  +E  YL +  ++   A+++L++F+ + M +A+ L+  LTN+++T  T
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

52) PIN17_A0686 in NC_017861


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  391 bits (1470),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 226/469 (49%), Positives = 335/469 (72%), Gaps = 3/469 (0%)

Query  14   ECTTMIVGQEMTSDGSMMVARSEDWDAMEAKNYEIYEDTTEGATEYVAKDSPFRCELPKE  73
             CTT++VG++ ++DGS ++AR+ED  A +AK+  I   + +   EY A  + F   LP  
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  74   ALGYSALAPYCLPNH-WGSAGFNTAGVGMSATESIFSSDEALKYDP-LVENGIAENAVFN  131
            A+ Y+A+  +   ++  G AGFN+AGVGMSATE+I+++  AL  DP +   GI+E+A+ +
Sbjct  79   AMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIES  138

Query  132  VVLPYIRTAREGVERLGMLIEKHGIAEGFGIGFVDNKEIWYLETACGHRWLACRMPKDQY  191
            V+LP  ++AR+G   LG +IE+ G +EGFG++F+D+KEIWYLET+ GH+WLA R+P D Y
Sbjct  139  VILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSY  198

Query  192  FVTGNQSRFRLYDPLDTENYMASNDLLEFAEKHGLYDPKKGDFDFHEAYARDIKLDTTYN  251
            FV++NQ+R+R YDP D  NYMAS  L+ FA K+GLYDP +G+FDFH+AY++D K DTTYN
Sbjct  199  FVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYN  258

Query  252  YPRVWGLQKMFSPSIKNDVTK-NTFPVYAKAEKPISIADMRHAFRFHYDNTEHDPYLHSN  310
            YPRVW LQ  F+P +   V+  +TFPV+  +   IS+A +++A+R HY+ T HDPY   N
Sbjct  259  YPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHN  318

Query  311  PKEPYRPVSIFRTTQTHILQVRPELPQAIGCVNYVAMGMADLGLFLPLYQGITSYPEAYT  370
            P+EP RP+S+FRT ++HILQVRP LPQAIG V+Y+A GM+ L+++LP YQG+  Y  +  
Sbjct  319  PQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDD  378

Query  371  KGTDKASVDSAYWKFRKVMTLGMVNYNKYAPIIKEAYLKFEAETDQRQREMEEEYLRIYK  430
            KGTD+AS DS+YW FR + TL M +YN +AP +++A   FE +T ++Q  ME+ YLR+Y 
Sbjct  379  KGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYA  438

Query  431  TQPLRAKDMLQEFSDKILTKGMELADRLQEELFTQLTKDIQAEYLFHGA  479
            ++P  A+ +LQ+F DK + ++  LA RL ++++T +T   +  Y F ++
Sbjct  439  SHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

53) HMPREF9137_0311 in NC_015311


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  390 bits (1468),  Expect = 8e-110, Method: Compositional matrix adjust.
 Identities = 221/469 (48%), Positives = 337/469 (72%), Gaps = 3/469 (0%)

Query  15   ECTTIIIGQEQTADGSMIVSRSEDWDAMEAKNYEIFEDTENGLCEFVARDSPFRCELPGK  74
             CTT+++G++ +ADGS I++R+ED  A +AK+  I   + +   E+ A+ + F   LP  
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  75   ALGYTALSPYSLHRH-WGSAGFNSAGVGMSATESIFSSDEVLKYDP-LVENGVAENSVFN  132
            A+ YTA+  +  + +  G AGFNSAGVGMSATE+I+++   L  DP +   G++E+++ +
Sbjct  79   AMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIES  138

Query  133  ITLPYVRTAREGVERLGMLIEEHGIAEGFGIGFVDNKEIWYLETACGHRWLACRMPKDQY  192
            + LP  ++AR+G   LG +IE+ G +EGFG++F+D+KEIWYLET+ GH+WLA R+P D Y
Sbjct  139  VILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSY  198

Query  193  FVTGNQSRFRTYDPDDKDNYLASADLIEFAEKHGLYDPSQGAFDFHKAYARDVELDTTYN  252
            FV++NQ+R+R YDP+D+ NY+AS+ L+ FA K+GLYDP++G FDFH+AY++D   DTTYN
Sbjct  199  FVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYN  258

Query  253  YPRVWGLQRLFSPDIKNDVTK-NTFPVFARAAHKITLTELRTAFRFHYDNTEHDPYLHSN  311
            YPRVW LQ+ F+P++   V+  +TFPVF  +  KI+++ ++ A+R HY+ T HDPY   N
Sbjct  259  YPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHN  318

Query  312  PKEPYRPVSIFRTTQTHLLQVRPELPQAIGCINYVAMGMADLGVFLPLYQGITSYPEAYT  371
            P+EP RP+S+FRT ++H+LQVRP LPQAIG ++Y+A GM+ L+V+LP YQG+  Y  +  
Sbjct  319  PQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDD  378

Query  372  KGTGESSADSAYWKFRKVMVLGMTNYNKYAPVIKEAYAKFEAETDQRQREMEEEYLRIYK  431
            KGT+ +S DS+YW FR +  L M +YN +AP +++A   FE +T ++Q  ME+ YLR+Y 
Sbjct  379  KGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYA  438

Query  432  TQPLHAQDLLQAFSDRILNSALTLADRLQERLFTLMTQDIQQEYLFHGA  480
            ++P +AQ LLQ F D+ +++A TLA RL + ++T MT   +  Y F ++
Sbjct  439  SHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

54) MU9_3194 in NC_020418


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  378 bits (1422),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 241/489 (50%), Positives = 347/489 (71%), Gaps = 6/489 (1%)

Query  6    LSLAVGAALVISDATACTTIFVGENASSDGAQYIARNEDMNPANPKVLQVNQEKVNKDTE  65
            L++AV + L ++   ACTT++VG++AS+DG+  IARNED ++ N+K   ++    +++ E
Sbjct  5    LAFAV-TLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGE  63

Query  66   FKTNLNKFTYTLPEKAMRYTTIPEWNDKGQFRFSSNGFNDAGVGISATETIFANEASLKI  125
            +K++ N+F+  LPE AMRYT+I + + +++   +  GFN AGVG+SATETI+   A+L  
Sbjct  64   YKAHRNNFSWPLPETAMRYTAIHDFDTNDN-AMGEAGFNSAGVGMSATETIYNGRAALAA  122

Query  126  DPYVEDTGIIEDAIPDVVLPYVSSAKEGVMRLgkiieekgagegfgVAFIDKDGIWYLET  185
            DPYV  TGI EDAI  V+LP   SA++G   LG IIE+KGAGEGFGVAFID   IWYLET
Sbjct  123  DPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLET  182

Query  186  GSGHQWMAAKIPANTYYVTANQGRLEKFDMNDKENYLSSPTLISFAEKNGLYDPKKDGEF  245
            GSGHQW+A ++PA++Y+V+ANQGRL  +D ND+ NY++SPTL+SFA K+GLYDP + GEF
Sbjct  183  GSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEF  241

Query  246  NFKKAYTKDDAKSDGYYNYPRVLVLQKMYNPEIKTDFKDVKSNDFPVFLKPAKKLGLEDI  305
            +F +AY++D+ K+D  YNYPRV  LQ  +NP++ T   +  ++ FPVFL P  K+++  +
Sbjct  242  DFHQAYSQDN-KNDTTYNYPRVWTLQHQFNPHLDTVVSE--GETFPVFLTPITKISVAAV  298

Query  306  KAGLRNHYENVGTSPYATTYPDTTKRPISVFRTQHSHILQVRKDLPKEIGNVRYIAFGMP  365
            K +LRNHY+  +  PYA+  P+   RPISVFRTQ+SHILQVR  LP+ IGNV YIA+GMP
Sbjct  299  KNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMP  358

Query  366  TLSVYVPVYYGPDSYVEAYTIGSPQADNASAHWKFRKLQTLAMIDFNKYSKIVQAEYSKQ  425
            +LSVY+P Y G   Y  +   G+ +A N S+ W FR LQTL M D+N ++  VQ      
Sbjct  359  SLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTF  418

Query  426  EAEFAKEQQAMEKEYLSIYKTDPAKAKQLLQDFQNKVMQDALNTTDKLTNIIMQDLTNSV  485
            E + AK+Q  ME+ YL +Y ++P  A++LLQ+F++K MQ+A   + +LTN I+  +T   
Sbjct  419  EQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRT  478

Query  486  NERYRFKGA  494
            + +Y+F ++
Sbjct  479  DMKYHFSST  487

55) ETAC_07950 in NC_020796


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  376 bits (1415),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 225/477 (48%), Positives = 338/477 (71%), Gaps = 9/477 (1%)

Query  20   SCTTILIGAAATRDGSRIIARTEDHDPLLSKVLLKHPPKADQRGLFHANENAFSWPLPQT  79
            +CTT+L+G  A+ DGS IIAR ED  +  +K  + HP   +Q+G + A+ N FSWPLP+T
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  80   AQGYSAFANGKVGKTAAQMTWGAAGFNQRGVGMSATETIFASEQALLHDPYLSESGITED  139
            A  Y+A+ +      A     G AGFN  GVGMSATETI+ +  AL  DPY++ +GITED
Sbjct  79   AMRYTAIHDFDTNDNAM----GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITED  134

Query  140  SIVDIVLPYIDSARDGVSRLGKMIEEQGAGEGFGVAFIDSDEIWYLETGSAHQWLAAKLP  199
            +I  ++LP  +SAR+G   LG +IE++GAGEGFGVAFIDS EIWYLETGS+HQWLA +LP
Sbjct  135  AIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLP  194

Query  200  PHGYFVTGNQGRLRDYDPDDHDGYMASASLIDFALQHGLYDPQREGAFNFERAYTRHDDR  259
            +++YFV++NQGRLR+YDP+D+  YMAS++L+ FA ++GLYDP R G F+F++AY+ +D++
Sbjct  195  ADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-QDNK  252

Query  260  LDGYYNYPRVYALQQLYRPDPDRTLQQPQQFAVFEAPSAALDVESVKRGLRNTYDNLGRQ  319
             D  YNYPRV +LQ+ + P+ D  + + + F+VF +P + + V +VK +LRN Y+  +++
Sbjct  253  NDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHD  312

Query  320  PYA-DTPDYTWRPISLFRTQQSHILQSRSGLPRALSDVIYLSYGMPSISLYIPFYPNAQG  378
            PYA + P+  WRPIS+FRTQ+SHILQ R+ LP+A+++V Y++YGMPS+S+Y+P+Y   + 
Sbjct  313  PYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRH  372

Query  379  DVPAAYCEVTAGEADTFSAQWQFRKLQTLVMVNYYRYAPSVQQAYQQLELRFSELQQAME  438
              P+   +  ++ A   S+ W FR LQTLVM +Y  +AP VQ+A + +E + +  Q  ME
Sbjct  373  YQPGD--DKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKME  430

Query  439  SEYINIYQDDMDEADRLLQRFGEQVFAEALETTQRLTNQLFTQLAQDVNAKYLFAGA  495
              Y+ +Y  +  EA+RLLQ F ++   +A   ++RLTN+++T ++   + KY F+++
Sbjct  431  QSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

56) ETAE_1728 in NC_013508


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  376 bits (1415),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 225/477 (48%), Positives = 338/477 (71%), Gaps = 9/477 (1%)

Query  20   SCTTILIGAAATRDGSRIIARTEDHDPLLSKVLLKHPPKADQRGLFHANENAFSWPLPQT  79
            +CTT+L+G  A+ DGS IIAR ED  +  +K  + HP   +Q+G + A+ N FSWPLP+T
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  80   AQGYSAFANGKVGKTAAQMTWGAAGFNQRGVGMSATETIFASEQALLHDPYLSESGITED  139
            A  Y+A+ +      A     G AGFN  GVGMSATETI+ +  AL  DPY++ +GITED
Sbjct  79   AMRYTAIHDFDTNDNAM----GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITED  134

Query  140  SIVDIVLPYIDSARDGVSRLGKMIEEQGAGEGFGVAFIDSDEIWYLETGSAHQWLAAKLP  199
            +I  ++LP  +SAR+G   LG +IE++GAGEGFGVAFIDS EIWYLETGS+HQWLA +LP
Sbjct  135  AIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLP  194

Query  200  PHGYFVTGNQGRLRDYDPDDHDGYMASASLIDFALQHGLYDPQREGAFNFERAYTRHDDR  259
            +++YFV++NQGRLR+YDP+D+  YMAS++L+ FA ++GLYDP R G F+F++AY+ +D++
Sbjct  195  ADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-QDNK  252

Query  260  LDGYYNYPRVYALQQLYRPDPDRTLQQPQQFAVFEAPSAALDVESVKRGLRNTYDNLGRQ  319
             D  YNYPRV +LQ+ + P+ D  + + + F+VF +P + + V +VK +LRN Y+  +++
Sbjct  253  NDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHD  312

Query  320  PYA-DTPDYTWRPISLFRTQQSHILQSRSGLPRALSDVIYLSYGMPSISLYIPFYPNAQG  378
            PYA + P+  WRPIS+FRTQ+SHILQ R+ LP+A+++V Y++YGMPS+S+Y+P+Y   + 
Sbjct  313  PYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRH  372

Query  379  DVPAAYCEVTAGEADTFSAQWQFRKLQTLVMVNYYRYAPSVQQAYQQLELRFSELQQAME  438
              P+   +  ++ A   S+ W FR LQTLVM +Y  +AP VQ+A + +E + +  Q  ME
Sbjct  373  YQPGD--DKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKME  430

Query  439  SEYINIYQDDMDEADRLLQRFGEQVFAEALETTQRLTNQLFTQLAQDVNAKYLFAGA  495
              Y+ +Y  +  EA+RLLQ F ++   +A   ++RLTN+++T ++   + KY F+++
Sbjct  431  QSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

57) ETAF_1563 in NC_017309


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  376 bits (1415),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 225/477 (48%), Positives = 338/477 (71%), Gaps = 9/477 (1%)

Query  20   SCTTILIGAAATRDGSRIIARTEDHDPLLSKVLLKHPPKADQRGLFHANENAFSWPLPQT  79
            +CTT+L+G  A+ DGS IIAR ED  +  +K  + HP   +Q+G + A+ N FSWPLP+T
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  80   AQGYSAFANGKVGKTAAQMTWGAAGFNQRGVGMSATETIFASEQALLHDPYLSESGITED  139
            A  Y+A+ +      A     G AGFN  GVGMSATETI+ +  AL  DPY++ +GITED
Sbjct  79   AMRYTAIHDFDTNDNAM----GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITED  134

Query  140  SIVDIVLPYIDSARDGVSRLGKMIEEQGAGEGFGVAFIDSDEIWYLETGSAHQWLAAKLP  199
            +I  ++LP  +SAR+G   LG +IE++GAGEGFGVAFIDS EIWYLETGS+HQWLA +LP
Sbjct  135  AIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLP  194

Query  200  PHGYFVTGNQGRLRDYDPDDHDGYMASASLIDFALQHGLYDPQREGAFNFERAYTRHDDR  259
            +++YFV++NQGRLR+YDP+D+  YMAS++L+ FA ++GLYDP R G F+F++AY+ +D++
Sbjct  195  ADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-QDNK  252

Query  260  LDGYYNYPRVYALQQLYRPDPDRTLQQPQQFAVFEAPSAALDVESVKRGLRNTYDNLGRQ  319
             D  YNYPRV +LQ+ + P+ D  + + + F+VF +P + + V +VK +LRN Y+  +++
Sbjct  253  NDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHD  312

Query  320  PYA-DTPDYTWRPISLFRTQQSHILQSRSGLPRALSDVIYLSYGMPSISLYIPFYPNAQG  378
            PYA + P+  WRPIS+FRTQ+SHILQ R+ LP+A+++V Y++YGMPS+S+Y+P+Y   + 
Sbjct  313  PYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRH  372

Query  379  DVPAAYCEVTAGEADTFSAQWQFRKLQTLVMVNYYRYAPSVQQAYQQLELRFSELQQAME  438
              P+   +  ++ A   S+ W FR LQTLVM +Y  +AP VQ+A + +E + +  Q  ME
Sbjct  373  YQPGD--DKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKME  430

Query  439  SEYINIYQDDMDEADRLLQRFGEQVFAEALETTQRLTNQLFTQLAQDVNAKYLFAGA  495
              Y+ +Y  +  EA+RLLQ F ++   +A   ++RLTN+++T ++   + KY F+++
Sbjct  431  QSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

58) CCC13826_1838 in NC_009802


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  369 bits (1386),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 230/474 (49%), Positives = 341/474 (72%), Gaps = 13/474 (2%)

Query  14   AILGTSS-LACTTILVGDKASNDGSMLVARSADSKAIKAQVFLIHPATKNQTGMHSSKAH  72
            ++LG +  +ACTT+LVG++AS DGS ++AR+ D+ A +A+  +IHP + +Q G    KAH
Sbjct  10   TLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQG--EYKAH  67

Query  73   DGANDFTYPLPKDGMRYTTIAN--SHTKLHGAVGYNEAGVGLSGTETIYAKDELLKIDPY  130
               N+F+ PLP  +MRYT+I +  ++ +  G  G+N AGVG+S+TETIY     L  DPY
Sbjct  68   R--NNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPY  125

Query  131  NEETGITEDDIPDVLLPRIKSAKEGVKLLGEIVETKGAGEGFGVVFVDANELWYFETGTG  190
               TGITED I  V+LP  +SA++G KLLG+I+E KGAGEGFGV F+D++E+WY+ETG+G
Sbjct  126  VTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSG  185

Query  191  HKWIASKIPQDEYFVTANQGRLHAYK-ENDPNFMGAKDVIKFAIDNKTYDPAKDGEFNFT  249
            H+W+A ++P D YFV+ANQGRL+ Y  ++++N+M++  ++ FA  +  YDPA+ GEF+F 
Sbjct  186  HQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFH  244

Query  250  KAYTRDDERDVTYNYPRVCW-VQSMFNPSLKQDFADGQKFPVFLKPEKKLSIEDLKAAMR  308
            +AY++D+  D TYNYPRV W +Q  FNP L    ++G+ FPVFL P  K+S+  +K A+R
Sbjct  245  QAYSQDNKNDTTYNYPRV-WTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALR  303

Query  309  AHYDGTAFDNYASKDEDKKNIYRAISVFRTYESHVMQVRPWLPKEIGRVTYVALGMADLS  368
             HY+GT+ D YAS + +  +  R+ISVFRT ESH++QVRP LP+ IG V Y+A GM+ LS
Sbjct  304  NHYQGTSHDPYASHNPQ--EPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLS  361

Query  369  VYLPYYEGLDGFIKGYSDGSYDADDTSIYWVYRKLQTLVMTDYEKYSPVVKEAYAKFEKE  428
            VYLPYY+G+  +  G   G+  A + S YW +R LQTLVM DY+ ++P V++A   FE++
Sbjct  362  VYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQ  421

Query  429  LAVKQAKFEDEYVklykkdkkkadkllNEFSQKTMQEAKDLTQELTNKVFTMLT  482
             A +Q K E+ Y++LY  + K A++LL++F +KTMQ+A+ L++ LTN+++T +T
Sbjct  422  TAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

59) SARI_00887 in NC_010067


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 218/443 (50%), Positives = 321/443 (73%), Gaps = 9/443 (2%)

Query  2    IVARSADSDAMKAQHFVIHPAMHNQTGMYSTKAHNGANDFTWPLPKESLRYTTVPNWKTQ  61
            I+AR+ D+ A +A+H VIHP   +Q G Y  KAH   N+F+WPLP  ++RYT++ +  T+
Sbjct  36   IIARNEDGSANNAKHKVIHPIAFHQQGEY--KAHR--NNFSWPLPETAMRYTAIHDFDTN  91

Query  62   LH--GATGFNEAGVGVSGTESIFASPKALAFDPYVEDKGITEDDIPDILLSQTKTAREAI  119
             +  G +GFN AGVG+S+TE+I+ +  ALA DPYV   GITED I  ++L+ +++AR++ 
Sbjct  92   DNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGA  151

Query  120  ALLGHIIETvgagegfgvavvDDNEIWYLETATGHQWMAQRLPADQYFATGNQGRLQNYD  179
             LLG+IIE  GAGEGFGVA +D +EIWYLET++GHQW+A RLPAD YF ++NQGRL++YD
Sbjct  152  KLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYD  211

Query  180  PND-ANMMGSKSLVTFATEKGLYNPQKDGKFNFSKAYTRDDERDRTYNDPRVWTIQQKFN  238
            PND AN M+S +LV+FA  +GLY+P + G F+F +AY++D+  D TYN PRVWT+Q++FN
Sbjct  212  PNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYSQDNKNDTTYNYPRVWTLQHQFN  270

Query  239  PSVKQDMTAGRLFPVFMMPEKKMTLDDVKAVLRSHYEGTKHDPYSNGLNGKEPWRPVSVF  298
            P +   ++ G  FPVF+ P  K+++  VK  LR+HY+GT HDPY+ + N +EPWRP+SVF
Sbjct  271  PHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYA-SHNPQEPWRPISVF  329

Query  299  RTYEAHVMQVRPWLPKEIGEVSYIGLGMADLTAFVPYYSGLKAYPANYTMGTDKADSQSI  358
            RT E+H++QVRP LP+ IG+V YI+ GM+ L+ ++PYY G++ Y +    GTD+A ++S 
Sbjct  330  RTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDST  389

Query  359  YWKYRKLQTLTMTDYPKLAPIVKKAYAEWEAKIAKEQQEVEAEYLNMAKINKDAADKMLN  418
            YW +R LQTL M DY  +AP V+ A    E + AK+Q  +E  YL +   +   A+++L+
Sbjct  390  YWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQ  449

Query  419  DFNLRIMADAEKLTEALTNQLFT  441
            +F+ + M +A+ L+  LTN+++T
Sbjct  450  NFEDKTMQNAQTLARRLTNNIIT  472

60) ETAC_10745 in NC_020796


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  352 bits (1323),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 233/480 (49%), Positives = 335/480 (70%), Gaps = 15/480 (3%)

Query  16   ACTTILVGAGATSDGSRIIARTEDHDPTLSKVMLKHQAKENSSDTFHANENKFTYSVPKK  75
            ACTT+LVG  A++DGS IIAR ED  +  +K  + H    +  + + A+ N+F+ ++P  
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  76   AFSYTS---FSNGKEGKQPDQMTWGAAGFNQKGVGMTATETIFASAEALKHDPYLPETGI  132
            A  YT+   F    ++        G AGFN  GVGM+ATETI+ +  AL  DPY+  TGI
Sbjct  79   AMRYTAIHDFDTNDNAM-------GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGI  131

Query  133  TEDSITDVILPYVSSAREGAARLgkiieekgagegfgVAFVDQHDIWYLETGSGHQWLAT  192
            TED+I  VILP   SAR+GA  LG IIE+KGAGEGFGVAF+D  +IWYLETGSGHQWLA 
Sbjct  132  TEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAV  191

Query  193  RLPKDDYYVTGNQGRLQTYKPDDSANYMASPTLISAAEKYGLYDPKRDGDFNFEKAYTLH  252
            RLP D Y+V++NQGRL+ Y P+D+ANYMASPTL+S A K GLYDP R G+F+F++AY+ +
Sbjct  192  RLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-Q  249

Query  253  NEKNDPYYNYPRVYALQHLYTPDIKTSLAEPQHFPVFAKPEAKLDIDAVKQGLRNTYENI  312
            ++KND  YNYPRV +LQH + P++ T ++E + FPVF  P +K+ + AVK++LRN Y+  
Sbjct  250  DNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGT  309

Query  313  ERKPY-TQTPDYRLRPVSLFRTQQAHILQARDGLPQGIADVEYLAYGMPSISIFIPVYAN  371
             + PY ++ P+   RP+S+FRTQ++HILQ R  LPQ+I++VEY+AYGMPS+S+++P Y +
Sbjct  310  SHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYY-Q  368

Query  372  SIHQFPQAYRTVTSGKADSVSAQWQFRKLQTLVMMDYYKYAPVVQKAYKQQEATFSVMQR  431
            +++++  +     +++A + S+ W FR LQTLVM DY  +AP VQ A K  E   +  Q 
Sbjct  369  GMRHYQPG-DDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQY  427

Query  432  DMEKAYLATYQKDPAKAQQLVQQFEDRVFSDALSTTQTLTNQIFTQLTQDVNTKYKFAGA  491
             ME++YL  Y  +P  AQ+L+Q+FED+   +A + ++ LTN+I+T +T   + KY F+++
Sbjct  428  KMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

61) ETAE_2273 in NC_013508


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  351 bits (1320),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 233/480 (49%), Positives = 335/480 (70%), Gaps = 15/480 (3%)

Query  24   ACTTILVGAGATSDGSRIIARTEDHDPTLSKVMLKHQAKENSSDTFHANENKFTYSVPKK  83
            ACTT+LVG  A++DGS IIAR ED  +  +K  + H    +  + + A+ N+F+ ++P  
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPET  78

Query  84   AFSYTS---FSNGKEGKQPDQMTWGAAGFNQKGVGMTATETIFASAEALKHDPYLPETGI  140
            A  YT+   F    ++        G AGFN  GVGM+ATETI+ +  AL  DPY+  TGI
Sbjct  79   AMRYTAIHDFDTNDNAM-------GEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGI  131

Query  141  TEDSITDVILPYVSSAREGAARLgkiieekgagegfgVAFVDQHDIWYLETGSGHQWLAT  200
            TED+I  VILP   SAR+GA  LG IIE+KGAGEGFGVAF+D  +IWYLETGSGHQWLA 
Sbjct  132  TEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAV  191

Query  201  RLPKDDYYVTGNQGRLQTYKPDDSANYMASPTLISAAEKYGLYDPKRDGDFNFEKAYTLH  260
            RLP D Y+V++NQGRL+ Y P+D+ANYMASPTL+S A K GLYDP R G+F+F++AY+ +
Sbjct  192  RLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-GEFDFHQAYS-Q  249

Query  261  NEKNDPYYNYPRVYALQHLYTPDIKTSLAEPQHFPVFAKPEAKLDIDAVKQGLRNTYENI  320
            ++KND  YNYPRV +LQH + P++ T ++E + FPVF  P +K+ + AVK++LRN Y+  
Sbjct  250  DNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGT  309

Query  321  ERKPY-TQTPDYRLRPVSLFRTQQAHILQARDGLPQGIADVEYLAYGMPSISIFIPVYAN  379
             + PY ++ P+   RP+S+FRTQ++HILQ R  LPQ+I++VEY+AYGMPS+S+++P Y +
Sbjct  310  SHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYY-Q  368

Query  380  SIHQFPQAYRTVTSGKADSVSAQWQFRKLQTLVMMDYYKYAPVVQKAYKQQEATFSVMQR  439
            +++++  +     +++A + S+ W FR LQTLVM DY  +AP VQ A K  E   +  Q 
Sbjct  369  GMRHYQPG-DDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQY  427

Query  440  DMEKAYLATYQKDPAKAQQLVQQFEDRVFSDALSTTQTLTNQIFTQLTQDVNTKYKFAGA  499
             ME++YL  Y  +P  AQ+L+Q+FED+   +A + ++ LTN+I+T +T   + KY F+++
Sbjct  428  KMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

62) Bphyt_0754 in NC_010681


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  338 bits (1267),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 206/493 (42%), Positives = 338/493 (69%), Gaps = 14/493 (2%)

Query  1    MKRIFATIFAFVASAQLSLACTTIIVGKKATVDGSILVARNDDGPGITAVNFLYHP---P  57
            MK+ +A   ++++ +++ +ACTT++VG++A+ DGS+++ARN+DG++  A + + HP    
Sbjct  1    MKKYLAFAVTLLGMGKV-IACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFH  59

Query  58   RRDGYTLRSVMKNKFSYEMPSHLMGYTGSPR--GSGSAYDESGFNDAGVGVSATETIVSN  115
            +++ Y  +   +N+FS  +P   M YT+      +++A +E+GFN AGVG+SATETI + 
Sbjct  60   QQGEYKAH---RNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNG  116

Query  116  ARTLSVDPYVKETGIVEEVIPTIILSQAKSAREGVELLGALVESHGSAEGFGVAFVDSNE  175
              +L+ DPYV  TGI E+ I ++IL+ A+SAR+G  LLG ++E  G++EGFGVAF+DS+E
Sbjct  117  RAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKE  176

Query  176  AWYLENAGGHQWLAMRIPDDSYFVSANQSRLGEFDPDDH-NFLSSPNLVGFAQTHGLYDR  234
             WYLE ++GHQWLA+R+P DSYFVSANQ+RL ++DP+D+ N+++SP LV+FA+ +GLYD 
Sbjct  177  IWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDP  236

Query  235  ETEGPFSFRRAFGRDNEIDVRYNYPRVAQLQKWFTANAADQSVTANGFPTFRRPDHPVAV  294
             + G F F++A+++DN  D  YNYPRV  LQ  F ++       ++ FP F  P   ++V
Sbjct  237  -ARGEFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISV  295

Query  295  TDVQRALQDYFAGTPSDPYTSANPAATARPISVYRTYQSHVLQTRKGLPEGIANVEYLDL  354
            + V+ AL++ + GT+ DPY+S NP    RPISV+RT +SH+LQ R  LP++I+NVEY+  
Sbjct  296  AAVKNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAY  355

Query  355  GMTALGIYLPFYQGAA--IPESYRGVTGDSDDSSAFWQFRKVQLLAMQDFAHLAPIVRSR  412
            GM +L++YLP+YQG     P   +G T+ + + S++W FR +Q L MQD+  +AP V+  
Sbjct  356  GMPSLSVYLPYYQGMRHYQPGDDKG-TDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHA  414

Query  413  YDALALAIADKQLQFEEDYARVAKTDRVEADRMRDRFARGNVDAALAVSRELVNTLVTQL  472
              ++    A +Q + E+ Y R+  ++  EA+R+ + F    ++ A +++R L N ++T +
Sbjct  415  WKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTM  474

Query  473  SLRTNQLYRFPGS  485
            + RT+  Y+F+++
Sbjct  475  TYRTDMKYHFSST  487

63) Poras_1283 in NC_015501


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  328 bits (1229),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 201/473 (43%), Positives = 321/473 (68%), Gaps = 7/473 (1%)

Query  11   ECTTIIVGSRMSADGSRIVARSEDWDAMFAKNLTIYRPGEPGSVDPMRFDAFDSPFACDL  70
             CTT++VG++ SADGS I+AR+ED  A  AK+  I   +     +   + A  + F+  L
Sbjct  19   ACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGE---YKAHRNNFSWPL  75

Query  71   PGEAQSYSALPPYHLKGH-WGSAGFNESGVGMSATESIFSSDAALAVDP-LVEDGVAENS  128
            P  A  Y+A+  ++ +++  G AGFN +GVGMSATE+I+++ AALA DP +   G++E++
Sbjct  76   PETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDA  135

Query  129  VFNIVLPYIHTAREGVERLGKLIEEYGVSEGFGIGFVDSDEIWYLETASGHRWLACRIPE  188
            + +++LP  ++AR+G   LG +IE+ G +EGFG++F+DS EIWYLET+SGH+WLA R+P 
Sbjct  136  IESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPA  195

Query  189  EQYFVTGNQSRFRQYDPKDKEHFMASSDLIDFAQEHGLYDPKEGAFDFHKAYIRDVELDT  248
            + YFV++NQ+R+R+YDP+D+ ++MAS+ L+ FA+ +GLYDP  G FDFH+AY +D   DT
Sbjct  196  DSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDT  255

Query  249  TYNYPRVWGLQQMFTPAMKQDVSVND-FPVYAKAEKPITMEAMRHAFRFHYDDTEHDPYL  307
            TYNYPRVW LQ+ F P +   VS  + FPV+  +   I++ A+++A+R HY++T HDPY 
Sbjct  256  TYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYA  315

Query  308  HSNPHEVYRPVSIFRTTQTHILQVQPKLPVAVGRINHVCLGMADLGLFVPLFQGVTSYPE  367
              NP+E  RP+S+FRT ++HILQV+PKLP A+G ++ +  GM+ L++++P +QG+  Y  
Sbjct  316  SHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQP  375

Query  368  PYTKGGGESSQESAYWTFRKVQVLGMTNYNKYAPLIKARYHAFEQECDERIEEIQRRYCH  427
               KG + +S++S+YWTFR +Q L M +YN +AP ++    +FEQ+   +   +++ Y +
Sbjct  376  GDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLR  435

Query  428  MLDKGMTHAAQDMLQEASDAILWRaldladalIEELFTQMTRDIQAEYLFHGA  480
            +   +    AQ +LQ+  D  +  A  LA  L ++++T MT   +  Y F ++
Sbjct  436  LYA-SHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSST  487

64) ETAF_2051 in NC_017309


> NC_003197_P1|9|G8|16764452|NP_460067.1|Salmonella_typhimurium_LT2|-|5318..6787|pipD|STM1094|pathogenicity 
island-encoded 
protein D
Length=489

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 213/432 (50%), Positives = 309/432 (72%), Gaps = 9/432 (2%)

Query  14   FHANENKFTYSVPKKAFSYTSFSNGKEGKQPDQMTWGAAGFNQKGVGMTATETIFASAEA  73
            + A+ N+F+ ++P  A  YT++ +     ++     G AGFN  GVGM+ATETI+ +  A
Sbjct  64   YKAHRNNFSWPLPETAMRYTAIHDFDTNDNAM----GEAGFNSAGVGMSATETIYNGRAA  119

Query  74   LKHDPYLPETGITEDSITDVILPYVSSAREGAARLgkiieekgagegfgVAFVDQHDIWY  133
            L  DPY+  TGITED+I  VILP   SAR+GA  LG IIE+KGAGEGFGVAF+D  +IWY
Sbjct  120  LAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWY  179

Query  134  LETGSGHQWLATRLPKDDYYVTGNQGRLQTYKPDDSANYMASPTLISAAEKYGLYDPKRD  193
            LETGSGHQWLA RLP D Y+V++NQGRL+ Y P+D+ANYMASPTL+S A K GLYDP R 
Sbjct  180  LETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPAR-  238

Query  194  GDFNFEKAYTLHNEKNDPYYNYPRVYALQHLYTPDIKTSLAEPQHFPVFAKPEAKLDIDA  253
            G+F+F++AY+ +++KND  YNYPRV +LQH + P++ T ++E + FPVF  P +K+ + A
Sbjct  239  GEFDFHQAYS-QDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAA  297

Query  254  VKQGLRNTYENIERKPY-TQTPDYRLRPVSLFRTQQAHILQARDGLPQGIADVEYLAYGM  312
            VK++LRN Y+   + PY ++ P+   RP+S+FRTQ++HILQ R  LPQ+I++VEY+AYGM
Sbjct  298  VKNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGM  357

Query  313  PSISIFIPVYANSIHQFPQAYRTVTSGKADSVSAQWQFRKLQTLVMMDYYKYAPVVQKAY  372
            PS+S+++P Y ++++++  +     +++A + S+ W FR LQTLVM DY  +AP VQ A 
Sbjct  358  PSLSVYLPYY-QGMRHYQPG-DDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAW  415

Query  373  KQQEATFSVMQRDMEKAYLATYQKDPAKAQQLVQQFEDRVFSDALSTTQTLTNQIFTQLT  432
            K  E   +  Q  ME++YL  Y  +P  AQ+L+Q+FED+   +A + ++ LTN+I+T +T
Sbjct  416  KTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMT  475

Query  433  QDVNTKYKFAGA  444
               + KY F+++
Sbjct  476  YRTDMKYHFSST  487