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Homologs of YPO0262 gene of NC_003143_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) YP_0416
( NP_991810.1 )

type III secretion apparatus

NC_005810
(Yersinia pestis 91001)

3e-32

100

2) A1122_03830
( YP_005520461.1 )

putative type III secretion apparatus

NC_017168
(Yersinia pestis A1122)

3e-32

100

3) YpAngola_A3938
( YP_001608236.1 )

type III secretion apparatus protein, YscI/HrpB

NC_010159
(Yersinia pestis Angola)

3e-32

100

4) YPA_4021
( YP_653927.1 )

putative type III secretion apparatus

NC_008150
(Yersinia pestis Antiqua)

3e-32

100

5) YPO0262
( YP_002345343.1 )

type III secretion apparatus

NC_003143
(Yersinia pestis CO92)

3e-32

100

6) YPC_0746
( YP_005622732.1 )

putative type III secretion apparatus

NC_017265
(Yersinia pestis Harbin 35)

3e-32

100

7) YPN_3407
( YP_649334.1 )

type III secretion apparatus

NC_008149
(Yersinia pestis Nepal516)

3e-32

100

8) YPDSF_3709
( YP_001165032.1 )

type III secretion apparatus

NC_009381
(Yersinia pestis Pestoides F)

3e-32

100

9) YPTB0318
( YP_068864.1 )

type III secretion apparatus

NC_006155
(Yersinia pseudotuberculosis IP 32953)

3e-32

100

10) YPTS_0342
( YP_001870788.1 )

YscI/HrpB family type III secretion apparatus protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

3e-32

100

11) YPK_3911
( YP_001722629.1 )

YscI/HrpB family type III secretion apparatus protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-32

100

12) YpsIP31758_3824
( YP_001402778.1 )

type III secretion apparatus protein, YscI/HrpB

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-31

100

13) y0520
( NP_667858.1 )

hypothetical protein

NC_004088
(Yersinia pestis KIM)

3e-23

14) YE105_C0326
( YP_004296527.1 )

hypothetical protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-17

15) Y11_35341
( YP_006007033.1 )

putative type III secretion apparatus

NC_017564
(Yersinia enterocolitica Y11)

4e-17

16) SG1294
( YP_454974.1 )

type III secretion apparatus

NC_007712
(Sodalis glossinidius morsitans)

7e-06

17) ssaI
( YP_002923056.1 )

type III secretion system apparatus protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

4e-05

• Sequence Alignments

1) A1122_03830 in NC_017168


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

2) YpAngola_A3938 in NC_010159


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

3) YPA_4021 in NC_008150


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

4) YPC_0746 in NC_017265


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

5) YP_0416 in NC_005810


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

6) YPO0262 in NC_003143


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

7) YPN_3407 in NC_008149


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

8) YPDSF_3709 in NC_009381


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

9) YPTB0318 in NC_006155


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

10) YPTS_0342 in NC_010634


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

11) YPK_3911 in NC_010465


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60
           MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  61  AIDLTAKVAGVMGQNINKLVNMQ  83
           AIDLTAKVAGVMGQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

12) YpsIP31758_3824 in NC_009708


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAI  60
           MSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAI
Sbjct  3   MSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAI  62

Query  61  DLTAKVAGVMGQNINKLVNMQ  81
           DLTAKVAGVMGQNINKLVNMQ
Sbjct  63  DLTAKVAGVMGQNINKLVNMQ  83

13) y0520 in NC_004088


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 63/64 (99%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   MGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAIDLTAKVAGVMGQNINKL  60
           +GNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAIDLTAKVAGVMGQNINKL
Sbjct  20  VGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAIDLTAKVAGVMGQNINKL  79

Query  61  VNMQ  64
           VNMQ
Sbjct  80  VNMQ  83

14) YE105_C0326 in NC_015224


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score = 81.5 bits (290),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 1/83 (1%)

Query  1   MEIDAINAAAKLNIPSQPP-ADAQHIAKFAQLMQQVEPATPMISPDQFLSVQSEWMHATL  59
           M++ + +A A L  +++PP +++Q++AKF+QLM Q  ++  M++P+ +L  Q+EWMHA+L
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  60  SIDLTAKVAGVVGQNINKLVNMQ  82
           +IDLTAKVAGV+GQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

15) Y11_35341 in NC_017564


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score = 81.5 bits (290),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 1/83 (1%)

Query  1   MEIDAINAAAKLNIPSQPP-ADAQHIAKFAQLMQQVEPATPMISPDQFLSVQSEWMHATL  59
           M++ + +A A L  +++PP +++Q++AKF+QLM Q  ++  M++P+ +L  Q+EWMHA+L
Sbjct  1   MNMSSAQAVAGLFQATEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASL  60

Query  60  SIDLTAKVAGVVGQNINKLVNMQ  82
           +IDLTAKVAGV+GQNINKLVNMQ
Sbjct  61  AIDLTAKVAGVMGQNINKLVNMQ  83

16) SG1294 in NC_007712


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score = 44.0 bits (147),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 27/67 (41%), Positives = 46/67 (69%), Gaps = 1/67 (1%)

Query  18  APPSEGSPDAAAAFSQLLYGAAPVT-SLSPHDMLVRQAAIFGVTSGIDLGAKVAGSVAQS  76
           + P+ G+ +  A F+QL+  +A+    ++P+ +L++QA     + +IDL AKVAG ++Q+
Sbjct  16  TEPPVGNTQQVAKFTQLMAQPASTELMMTPESLLMQQAEWMHASLAIDLTAKVAGVMGQN  75

Query  77  INKLVNM  83
           INKLVNM
Sbjct  76  INKLVNM  82

17) ssaI in NC_012751


> NC_003143_P1|9|G9|218927468|YP_002345343.1|Yersinia_pestis_CO92|+|8026..8277|-|YPO0262|type 
III secretion apparatus
Length=83

 Score = 41.6 bits (138),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 27/64 (43%), Positives = 42/64 (66%), Gaps = 4/64 (6%)

Query  24  GTPEQINRFFDLLYNKKPVTD---TPQDALGIQYGVARATVKIDLDAKIAGVLGQGINKL  80
           G  +Q+ +F +L+  + + T+   TP+  L  Q    +A++ IDL AK+AGV+GQ INKL
Sbjct  21  GNTQQVAKFTQLM-AQPASTELMMTPESLLMQQAEWMHASLAIDLTAKVAGVMGQNINKL  79

Query  81  VSMQ  84
           V+MQ
Sbjct  80  VNMQ  83