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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpQ gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1214
( YP_234306.1 )

type III secretion protein HrpQ

NC_007005
(Pseudomonas syringae B728a)

1e-139

2) hrpQ
( YP_273550.1 )

type III secretion component protein HrpQ

NC_005773
(Pseudomonas syringae 1448A)

1e-126

3) hrpQ
( NP_791228.1 )

type III secretion protein HrpQ

NC_004578
(Pseudomonas syringae DC3000)

4e-123

4) Pmen_0040
( YP_001185546.1 )

YscD/HrpQ family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

3e-71

• Sequence Alignments

1) Psyr_1214 in NC_007005


> EF514224|9|G7|148562534|ABQ88353.1|Pseudomonas_syringae_pv._syringae_61|+|8835..9827|hrpQ|-|HrpQ
Length=330

 Score =  488 bits (1840),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 317/324 (98%), Positives = 322/324 (99%), Gaps = 0/324 (0%)

Query  1    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  60
            MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ
Sbjct  7    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  66

Query  61   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVIPKQPEAESGQARNDV  120
            GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAV+PKQPEAESG A+NDV
Sbjct  67   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVLPKQPEAESGPAHNDV  126

Query  121  PLEKVKSRSQFLNRTTgiiagllvgvigSAWSLTRPPAIAMDQSPAHLAAATTEASPDTP  180
            PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPPAIAMDQSPAHLAAATTEA PDTP
Sbjct  127  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPPAIAMDQSPAHLAAATTEALPDTP  186

Query  181  KAPARAANPVTDNRIRLSSADAVRHQLSTMLSDRLLTDVSVEETPDGLILNGDLKEESLL  240
            KAPARAANPVTD+RIRLS+ADAVRHQLSTMLSDRLLTD+SVEETPDGLILNGDLKEESLL
Sbjct  187  KAPARAANPVTDKRIRLSNADAVRHQLSTMLSDRLLTDISVEETPDGLILNGDLKEESLL  246

Query  241  VYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVYVGDEVD  300
            VYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVYVGDEVD
Sbjct  247  VYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVYVGDEVD  306

Query  301  GLRLTRIDNQRLQFDGNRHIEVNW  324
            GLRLTRIDNQRLQFDGNRHIEVNW
Sbjct  307  GLRLTRIDNQRLQFDGNRHIEVNW  330

2) hrpQ in NC_005773


> EF514224|9|G7|148562534|ABQ88353.1|Pseudomonas_syringae_pv._syringae_61|+|8835..9827|hrpQ|-|HrpQ
Length=330

 Score =  445 bits (1677),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 272/324 (84%), Positives = 309/324 (96%), Gaps = 0/324 (0%)

Query  1    MFELRVLNGQHQGAALPLVGEQWSIGSAAQHDLALDDAGVESLHCRLQRLDDSWTLNAEE  60
            MFELRVLNGQHQGAALPL+GEQWSIGSA+QHDLALDDAGVESLHCRLQR+DD+WTLNAE+
Sbjct  7    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  66

Query  61   GAVCDEEGNARPGIDLTLNTAFLLGSVWLCVSPAGDEWPSVPAVIPKQPQADPEPVRNDV  120
            GAVCDE+GNARP+IDLTLN AF+LGSVWLCVSPAGDEWPSVPAV+PKQP+A++ P +NDV
Sbjct  67   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVLPKQPEAESGPAHNDV  126

Query  121  PLKKVKSRSQLLIRTTgiiagllvgvigSAWSLTRPPAIAMYQSPGHMASVTAEAPVETS  180
            PL KVKSRSQ+L RTTGIIAGLLVGVIGSAWSLTRPPAIAM QSP+H+A+ T+EA  +T+
Sbjct  127  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPPAIAMDQSPAHLAAATTEALPDTP  186

Query  181  PTPAKIIKPVADKRIRLTSADAVRHQLGTMLSDRLLTDVSVEETAEGLVLNGDLKEESLL  240
             +PA+  +PV+DKRIRL++ADAVRHQL+TMLSDRLLTD+SVEET++GL+LNGDLKEESLL
Sbjct  187  KAPARAANPVTDKRIRLSNADAVRHQLSTMLSDRLLTDISVEETPDGLILNGDLKEESLL  246

Query  241  VYQRMLQRFKDRYESPVTVFDNVASTRSALPFVVVQIMTGPHAHLVTADGRRIYVGDEVD  300
            VYQRMLQRFK  Y+SPVTV+DNV+S R++LPFVVVQIMTGPHAHLVTADGRR+YVGDEVD
Sbjct  247  VYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVYVGDEVD  306

Query  301  GLRLTRIDNQRLQFDGNRHIEVNW  324
            GLRLTRIDNQRLQFDGNRHIEVNW
Sbjct  307  GLRLTRIDNQRLQFDGNRHIEVNW  330

3) hrpQ in NC_004578


> EF514224|9|G7|148562534|ABQ88353.1|Pseudomonas_syringae_pv._syringae_61|+|8835..9827|hrpQ|-|HrpQ
Length=330

 Score =  433 bits (1632),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 262/330 (80%), Positives = 307/330 (94%), Gaps = 6/330 (1%)

Query  1    MFELRVLNGQHQGAALPLIGEQWSIGSAQQQDLALDDSGVESLHCRLQRLDDSWTLNAEE  60
            MFELRVLNGQHQGAALPLIGEQWSIGSA Q+DLALDD+GVESLHCRLQR+DD+WTLNAE+
Sbjct  7    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  66

Query  61   GAVCDEEGHSQASVDLTLNTAFMLGSVWLCVSPAGDEWPSVPAVIPKQPQAEAEPARHEA  120
            GAVCDE+G++++S+DLTLN AFMLGSVWLCVSPAGDEWPSVPAV+PKQP+AE+ PA+++ 
Sbjct  67   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVLPKQPEAESGPAHNDV  126

Query  121  PLEKVKSRSQFLNRTTgiiagllvgvigSAWSLTRPAAIVLDQGPAHIASAMTTAPGMPN  180
            PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRP+AI +DQ+PAH+A+A T      +
Sbjct  127  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPPAIAMDQSPAHLAAATT------E  180

Query  181  AAPKTSQPAAKPAGPATDKRVRLASMEAVRHQLTTMLSDRMLTDVSVAETPEGLMLNGHL  240
            A P T++++A++A P TDKR+RL++ +AVRHQL+TMLSDR+LTD+SV ETP+GL+LNG+L
Sbjct  181  ALPDTPKAPARAANPVTDKRIRLSNADAVRHQLSTMLSDRLLTDISVEETPDGLILNGDL  240

Query  241  KEESLVVYQRMLQRFKDRYDSPVTVLDNVASARNTLPFVVVQIMTGPHAHLVTADGRRMY  300
            KEESL+VYQRMLQRFK  YDSPVTVLDNV+S RNTLPFVVVQIMTGPHAHLVTADGRR+Y
Sbjct  241  KEESLLVYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVY  300

Query  301  VGDEKDGLRLTKIDDQRLQFDGDRHIEVTW  330
            VGDE DGLRLT+ID+QRLQFDG+RHIEV W
Sbjct  301  VGDEVDGLRLTRIDNQRLQFDGNRHIEVNW  330

4) Pmen_0040 in NC_009439


> EF514224|9|G7|148562534|ABQ88353.1|Pseudomonas_syringae_pv._syringae_61|+|8835..9827|hrpQ|-|HrpQ
Length=330

 Score =  261 bits (976),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 153/324 (48%), Positives = 227/324 (71%), Gaps = 20/324 (6%)

Query  1    MYELRVLTGLHKGAALPLIGEQWLIGAEEGRDLALHDPGVETLHCRLQRAGDSWQLLAEE  60
            M+ELRVL G H+GAALPLIGEQW IG+   +DLAL+D+GVE+LHCRLQR +D+W L AE+
Sbjct  7    MFELRVLNGQHQGAALPLIGEQWSIGSAGQHDLALDDAGVESLHCRLQRVDDNWTLNAEQ  66

Query  61   GAVLDGEGHSHASMEVLLDCPLVLGSVWVYLAAAESPWPTLPALVGHPGEDGDSKASAEV  120
            GAV D +G++++S+++ L+ +++LGSVW+ +++A   WP++PA++    E   + A  +V
Sbjct  67   GAVCDEQGNARPSIDLTLNNAFMLGSVWLCVSPAGDEWPSVPAVLPKQPEAESGPAHNDV  126

Query  121  G---ERGRVRLLNRGTGIALGVLLGVMGSAWSLSWPVGSA----------------SGPA  161
                 ++R ++LNR TGI  G+L+GV+GSAWSL++P + A                ++ +
Sbjct  127  PLEKVKSRSQFLNRTTGIIAGLLVGVIGSAWSLTRPPAIAMDQSPAHLAAATTEALPDTP  186

Query  162  AVPTSEPAAVSDGRTLLQKDEAVR-VLKQMLSERLLTAVSVEPNEQGVALMGSLQGEGML  220
              P+  + +V+D R  L + +AVR  L  MLS+RLLT +SVE   +G+ L G L+ E++L
Sbjct  187  KAPARAANPVTDKRIRLSNADAVRHQLSTMLSDRLLTDISVEETPDGLILNGDLKEESLL  246

Query  221  VYERMLQRFEKDYETDFVLQDQVSSGAAGLPFVIVQIIAGPRGHLVMEDGRRLHVGDKLD  280
            VY+RMLQRF   Y++   + D+V+S    LPFV+VQI++GP++HLV  DGRR+ VGD +D
Sbjct  247  VYQRMLQRFKALYDSPVTVLDNVGSNRNTLPFVVVQIMTGPHAHLVTADGRRVYVGDEVD  306

Query  281  GLRLVRIDNERILFDGVRRYEVAW  304
            GLRL RIDN+R+ FDG R+ EV W
Sbjct  307  GLRLTRIDNQRLQFDGNRHIEVNW  330