Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of epaR gene of DQ077151

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECSP_3820
( - )

NC_013008
(Escherichia coli TW14359)

e-309

96.3

2) ECH74115_4139
( - )

NC_011353
(Escherichia coli EC4115)

e-239

96.5

• Sequence Alignments

1) ECSP_3820 in NC_013008


>DQ077151|9|G8|71388157|AAZ31291.1|Escherichia_coli_789|-|5206..5793|epaR|-|EpaR 
          Length = 588

 Score = 1057 bits (2729), Expect = e-309
 Identities = 565/588 (96%)
 Strand = Plus / Plus

Query: 1   atgggggaggtgatactctatcagttgcatagtctactggctgctacagcgctcggtttt 60
           |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1   atggaggaggcgatactctatcagttgcatagtctgctggctgctacagcgctcggtttt 60

Query: 61  tgccgattggcaccaactttctatttgttaccatttttcgccagtgggaatataccaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgccgattggcaccaactttctatttgttaccatttttcgccagtgggaatataccaaca 120

Query: 121 gtagtccgtcatccaataataatagtggtatcatgtgcattagttcagcattaccactat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 gtagtccgtcatccaataataatagtggtatcatgtgcattatttcagcattaccactat 180

Query: 181 gaattatcgaccttaaatgaaatcgatatcgctttgttagctgcaagagaaattatcata 240
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 181 gaattatcgaccttaaatgaaatcgatatcgctttgtttgctgccagagaaattatcata 240

Query: 241 gggctgttcattgcttgcttattagcatctccattttggattttccttgctataggtagc 300
           |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| 
Sbjct: 241 gggctgttcattgcttgcttattatcatccccgttttggattttccttgctataggtagt 300

Query: 301 tttatcgataaccaacgcggtgcaacgttaagtagtactttggatccggctacaggtgtc 360
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 301 tttatcgataaccaacgtggtgcaacgttaagtagtactttggatcctgctactggtgtc 360

Query: 361 gatacctcggaattagcaagattatttaaccttttctctgcagcggtttatcttactaac 420
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 gatacttcggaattagcaagattatttaacctattctctgcagcggtttatcttactaac 420

Query: 421 ggtggattgaactttattctggaaactctttagcaaagttataatttatggccttcagga 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 421 ggtggattgaactttattctggaaactctttggcaaagttataatttatggccttcaggc 480

Query: 481 agttttaattttcctaaattagagcctttattttcatatattaataatataatgactcat 540
           | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 481 aattttaattttcctaaattagagcctttattctcatatattaataacataatgactcat 540

Query: 541 actatcgtttacgcaagccccgtaattgcc-gttatgctgggtggtga 587
           ||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct: 541 actatcgtttacgcaagccccgtgattgccggttatgctgggcggtga 588

2) ECH74115_4139 in NC_011353


>DQ077151|9|G8|71388157|AAZ31291.1|Escherichia_coli_789|-|5206..5793|epaR|-|EpaR 
          Length = 588

 Score = 825 bits (2129), Expect = e-239
 Identities = 437/453 (96%)
 Strand = Plus / Plus

Query: 16  atgggggaggtgatactctatcagttgcatagtctactggctgctacagcgctcggtttt 75
           |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1   atggaggaggcgatactctatcagttgcatagtctgctggctgctacagcgctcggtttt 60

Query: 76  tgccgattggcaccaactttctatttgttaccatttttcgccagtgggaatataccaaca 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgccgattggcaccaactttctatttgttaccatttttcgccagtgggaatataccaaca 120

Query: 136 gtagtccgtcatccaataataatagtggtatcatgtgcattagttcagcattaccactat 195
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 gtagtccgtcatccaataataatagtggtatcatgtgcattatttcagcattaccactat 180

Query: 196 gaattatcgaccttaaatgaaatcgatatcgctttgttagctgcaagagaaattatcata 255
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 181 gaattatcgaccttaaatgaaatcgatatcgctttgtttgctgccagagaaattatcata 240

Query: 256 gggctgttcattgcttgcttattagcatctccattttggattttccttgctataggtagc 315
           |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| 
Sbjct: 241 gggctgttcattgcttgcttattatcatccccgttttggattttccttgctataggtagt 300

Query: 316 tttatcgataaccaacgcggtgcaacgttaagtagtactttggatccggctacaggtgtc 375
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 301 tttatcgataaccaacgtggtgcaacgttaagtagtactttggatcctgctactggtgtc 360

Query: 376 gatacctcggaattagcaagattatttaaccttttctctgcagcggtttatcttactaac 435
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 gatacttcggaattagcaagattatttaacctattctctgcagcggtttatcttactaac 420

Query: 436 ggtggattgaactttattctggaaactctttag 468
           ||||||||||||||||||||||||||||||| |
Sbjct: 421 ggtggattgaactttattctggaaactctttgg 453