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Homologs of iucC gene of AF335540

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) iucC
( YP_002400668.1 )

Aerobactin siderophore biosynthesis protein

NC_011745
(Escherichia coli ED1a)

0.0

2) SFxv_4050
( YP_005729315.1 )

Siderophore biosynthesis protein

NC_017328
(Shigella flexneri 2002017)

0.0

3) iucC
( NP_839221.1 )

siderophore biosynthesis protein

NC_004741
(Shigella flexneri 2457T)

0.0

4) iucC
( NP_709456.1 )

siderophore biosynthesis protein

NC_004337
(Shigella flexneri 301)

0.0

5) iucC
( YP_691167.1 )

siderophore biosynthesis protein

NC_008258
(Shigella flexneri 8401)

0.0

6) O3M_22990
( YP_006772206.1 )

Aerobactin siderophore biosynthesis protein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

7) O3O_02280
( YP_006786395.1 )

Aerobactin siderophore biosynthesis protein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

8) O3K_23075
( YP_006781266.1 )

Aerobactin siderophore biosynthesis protein

NC_018658
(Escherichia coli 2011C-3493)

0.0

9) iucC
( YP_002405518.1 )

Aerobactin siderophore biosynthesis protein

NC_011748
(Escherichia coli 55989)

0.0

10) iutC
( YP_006107280.1 )

aerobactin siderophore biosynthesis protein IucC

NC_017631
(Escherichia coli ABU 83972)

0.0

11) iucC
( YP_006145457.1 )

Aerobactin siderophore biosynthesis protein

NC_017646
(Escherichia coli CE10)

0.0

12) iucC
( YP_006155398.1 )

IucC protein

NC_017652
(Escherichia coli clone D i14)

0.0

13) iucC
( YP_006150479.1 )

IucC protein

NC_017651
(Escherichia coli clone D i2)

0.0

14) iucC
( YP_002409337.1 )

Aerobactin siderophore biosynthesis protein

NC_011750
(Escherichia coli IAI39)

0.0

15) iuvC
( YP_006141822.1 )

Citrate:6-N-acetyl-6-N-hydroxy-L-lysine ligase,alpha subunit, aerobactin biosynthesis protein / Siderophore synthetase superfamily, group C / Siderophore synthetase component, ligase

NC_017644
(Escherichia coli NA114)

0.0

16) iucC
( YP_410583.1 )

siderophore biosynthesis protein

NC_007613
(Shigella boydii Sb227)

0.0

17) SSON53_21545
( YP_005458801.1 )

siderophore biosynthesis protein

NC_016822
(Shigella sonnei 53G)

0.0

18) iucC
( YP_312389.1 )

siderophore biosynthesis protein

NC_007384
(Shigella sonnei Ss046)

0.0

19) iucC
( YP_003233784.1 )

siderophore biosynthesis protein

NC_013364
(Escherichia coli 11128)

0.0

20) iucC
( YP_003228389.1 )

siderophore biosynthesis protein

NC_013361
(Escherichia coli 11368)

0.0

21) iucC
( NP_755500.1 )

IucC protein

NC_004431
(Escherichia coli CFT073)

0.0

22) iucC
( YP_002414044.1 )

Aerobactin siderophore biosynthesis protein

NC_011751
(Escherichia coli UMN026)

0.0

23) iucC
( YP_001882799.1 )

aerobactin synthase subunit IucC

NC_010658
(Shigella boydii CDC 3083-94)

0.0

24) iucC
( YP_001481326.1 )

IucC

NC_009837
(Escherichia coli APEC O1)

0.0

25) iucC
( YP_006162309.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_017659
(Escherichia coli NRG 857C)

0.0

26) iucC
( YP_002401018.1 )

Aerobactin siderophore biosynthesis protein IucC

NC_011747
(Escherichia coli S88)

0.0

27) STMDT12_C38550
( YP_005249551.1 )

IucC

NC_016860
(Salmonella enterica T000240)

0.0

28) iucC
( YP_001745170.1 )

aerobactin siderophore biosynthesis protein IucC

NC_010498
(Escherichia coli SMS-3-5)

0.0

29) SARI_02154
( YP_001571173.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

30) CKO_00971
( YP_001452554.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

0.0

31) KPN2242_25271
( YP_005957445.1 )

IucC

NC_017541
(Klebsiella pneumoniae KCTC 2242)

0.0

32) pK2044_01330
( YP_001688092.1 )

hypothetical protein

NC_006625
(Klebsiella pneumoniae NTUH-K2044)

0.0

33) iucC
( YP_007993869.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

0.0

34) Pecwa_0949
( YP_003258374.1 )

IucA/IucC family protein

NC_013421
(Pectobacterium wasabiae WPP163)

0.0

35) iucC
( YP_005936382.1 )

aerobactin siderophore biosynthesis protein IucC

NC_017531
(Pantoea ananatis AJ13355)

0.0

36) iucC
( YP_003518647.1 )

IucC

NC_013956
(Pantoea ananatis LMG 20103)

0.0

37) PAGR_g3925
( YP_005994630.1 )

aerobactin siderophore biosynthesis protein IucC

NC_017554
(Pantoea ananatis PA13)

0.0

38) W5S_0840
( YP_006281830.1 )

Aerobactin siderophore biosynthesis protein IucC

NC_017845
(Pectobacterium sp. SCC3193)

0.0

39) iucC
( YP_005197492.1 )

aerobactin siderophore biosynthesis protein

NC_016816
(Pantoea ananatis LMG 5342)

0.0

40) D781_0885
( YP_007343403.1 )

siderophore synthetase component

NC_020064
(Serratia marcescens FGI94)

0.0

41) M621_04280
( YP_008157690.1 )

aerobactin synthase IucC

NC_021659
(Serratia plymuthica S13)

0.0

42) iucC
( YP_008136979.1 )

aerobactin synthase IucC

NC_021591
(Serratia odorifera 4Rx13)

0.0

43) ESA_pESA3p05549
( YP_001440582.1 )

hypothetical protein

NC_009780
(Cronobacter sakazakii ATCC BAA-894)

0.0

44) CSSP291_21028
( YP_007443069.1 )

hypothetical protein

NC_020263
(Cronobacter sakazakii Sp291)

0.0

45) iucC
( NP_994731.1 )

siderophore biosynthesis protein IucC

NC_005810
(Yersinia pestis 91001)

0.0

46) A1122_00015
( YP_005519712.1 )

putative siderophore biosynthesis protein IucC

NC_017168
(Yersinia pestis A1122)

0.0

47) iucC
( YP_001604817.1 )

aerobactin siderophore biosynthesis protein IucC

NC_010159
(Yersinia pestis Angola)

0.0

48) YPA_0272
( YP_650186.1 )

putative siderophore biosynthesis protein IucC

NC_008150
(Yersinia pestis Antiqua)

0.0

49) iucC
( YP_002346037.1 )

siderophore biosynthesis protein IucC

NC_003143
(Yersinia pestis CO92)

0.0

50) iucC
( YP_005503913.1 )

putative siderophore biosynthesis protein IucC

NC_017154
(Yersinia pestis D106004)

0.0

51) iucC
( YP_005507784.1 )

putative siderophore biosynthesis protein IucC

NC_017160
(Yersinia pestis D182038)

0.0

52) iucC
( YP_005622779.1 )

putative siderophore biosynthesis protein IucC

NC_017265
(Yersinia pestis Harbin 35)

0.0

53) iucC
( NP_670682.1 )

aerobactin synthetase (subunit beta)

NC_004088
(Yersinia pestis KIM)

0.0

54) YPN_3190
( YP_649117.1 )

siderophore biosynthesis protein IucC

NC_008149
(Yersinia pestis Nepal516)

0.0

55) YPDSF_0526
( YP_001161910.1 )

siderophore biosynthesis protein IucC

NC_009381
(Yersinia pestis Pestoides F)

0.0

56) iucC
( YP_003566918.1 )

putative siderophore biosynthesis protein IucC

NC_014029
(Yersinia pestis Z176003)

0.0

57) iucC
( YP_001399701.1 )

aerobactin siderophore biosynthesis protein IucC

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

58) iucC
( YP_071758.1 )

siderophore biosynthesis protein IucC

NC_006155
(Yersinia pseudotuberculosis IP 32953)

0.0

59) YPK_0784
( YP_001719538.1 )

IucA/IucC family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

60) iucC
( YP_003212682.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_013283
(Cronobacter turicensis z3032)

0.0

61) YPTS_3401
( YP_001873813.1 )

IucA/IucC family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

0.0

62) iucC
( YP_004952772.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_016514
(Enterobacter cloacae EcWSU1)

0.0

63) M495_03885
( YP_008228744.1 )

aerobactin synthase IucC

NC_021741
(Serratia liquefaciens ATCC 27592)

0.0

64) ECENHK_14310
( YP_006579333.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_018405
(Enterobacter cloacae ENHKU01)

0.0

65) Spro_0920
( YP_001477154.1 )

IucA/IucC family protein

NC_009832
(Serratia proteamaculans 568)

0.0

66) iucC
( YP_003613801.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_014121
(Enterobacter cloacae ATCC 13047)

0.0

67) A3UG_14865
( YP_006478401.1 )

Aerobactin siderophore biosynthesis protein iucC

NC_018079
(Enterobacter cloacae SDM)

0.0

68) SerAS9_0845
( YP_004504258.1 )

IucA/IucC family protein

NC_015567
(Serratia plymuthica AS9)

0.0

69) SerAS12_0845
( YP_004499306.1 )

IucA/IucC family protein

NC_015566
(Serratia sp. AS12)

0.0

70) SerAS13_0845
( YP_006023721.1 )

IucA/IucC family protein

NC_017573
(Serratia sp. AS13)

0.0

71) Swoo_2658
( YP_001761029.1 )

IucA/IucC family protein

NC_010506
(Shewanella woodyi ATCC 51908)

2e-108

72) GbCGDNIH1_2376
( YP_746197.1 )

aerobactin siderophore biosynthesis protein iucC

NC_008343
(Granulibacter bethesdensis CGDNIH1)

1e-101

73) M446_5060
( YP_001771821.1 )

IucA/IucC family protein

NC_010511
(Methylobacterium sp. 4-46)

1e-90

• Sequence Alignments

1) iucC in NC_011745


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  940 bits (3560),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

2) SFxv_4050 in NC_017328


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  940 bits (3560),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

3) iucC in NC_004741


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  940 bits (3560),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

4) iucC in NC_004337


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  940 bits (3560),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

5) iucC in NC_008258


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  940 bits (3560),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

6) iucC in NC_011748


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  939 bits (3558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAIKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLA+KREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGMDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGG+DIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

7) O3M_22990 in NC_018650


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  939 bits (3559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAIKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLA+KREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

8) O3O_02280 in NC_018661


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  939 bits (3559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAIKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLA+KREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

9) O3K_23075 in NC_018658


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  939 bits (3559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAIKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLA+KREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

10) iutC in NC_017631


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

11) iucC in NC_017652


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

12) iucC in NC_017651


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

13) iucC in NC_011750


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

14) iuvC in NC_017644


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

15) iucC in NC_017646


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3554),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

16) iucC in NC_007613


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3553),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/580 (99%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFVEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADF EG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDATSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRD TSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

17) SSON53_21545 in NC_016822


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3553),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/580 (99%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFVEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADF EG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDATSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRD TSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

18) iucC in NC_007384


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  938 bits (3553),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/580 (99%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFVEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADF EG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDATSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRD TSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

19) iucC in NC_004431


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  937 bits (3551),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

20) iucC in NC_013364


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  937 bits (3551),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

21) iucC in NC_013361


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  937 bits (3551),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

22) iucC in NC_011751


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  937 bits (3551),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/580 (99%), Positives = 578/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

23) iucC in NC_010658


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  937 bits (3550),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/580 (99%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180
            LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFVEG  240
            DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADF EG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEAFPEMDSLPQEVRDATSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKEAFPEMDSLPQEVRD TSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFAIFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFA+FSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

24) iucC in NC_009837


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  928 bits (3517),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/580 (97%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWD+VNRRLVAKMLSE+EYEQVFHAESQGDD+YCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRC+DEPVLAQTLLMQLK VLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLNADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINL+ADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DN++DI+QLLTAAMDPQEF+RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

25) iucC in NC_017659


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  928 bits (3517),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/580 (97%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWD+VNRRLVAKMLSE+EYEQVFHAESQGDD+YCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRC+DEPVLAQTLLMQLK VLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLNADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINL+ADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DN++DI+QLLTAAMDPQEF+RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

26) iucC in NC_011747


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  928 bits (3517),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/580 (97%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWD+VNRRLVAKMLSE+EYEQVFHAESQGDD+YCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRC+DEPVLAQTLLMQLK VLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLNADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINL+ADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DN++DI+QLLTAAMDPQEF+RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

27) STMDT12_C38550 in NC_016860


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  928 bits (3517),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 562/580 (97%), Positives = 577/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWD+VNRRLVAKMLSE+EYEQVFHAESQGDD+YCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120
            DAQTLRC+DEPVLAQTLLMQLK VLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLNADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINL+ADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DN++DI+QLLTAAMDPQEF+RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

28) iucC in NC_010498


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  927 bits (3513),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 560/580 (97%), Positives = 576/580 (99%), Gaps = 0/580 (0%)

Query  1    MNHKDWDLVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAERGIWGWLWI  60
            MNHKDWD+VNRRLVAKMLSE+EYEQVFHAESQGDD+YCINLPGAQWRFIAERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYSTLLGDLQLLKARRGLSASD  120
            DAQTLRC+DEPVLAQTLLMQLK VLSMSDATVAEHMQDLY+TLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LINLSADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRC  180
            LINL ADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHMIWRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240
            DN++DI+QLLTAAMDPQEF+RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300
            RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATLVQSGA+ILGEPAAGYVSHEGYAALARAPYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPVLMATLMECDENDQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESPVLMATLMECDEN+QPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVKE FPEMDSLPQEVRDVTSRLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIR  540
            QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM+KHPQM+ERFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVTQEYES  580
            VVLNPVKLTWPDLDGGSRMLPNYLE+LQNPLWLVTQEYES
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYES  580

29) SARI_02154 in NC_010067


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  877 bits (3320),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/577 (90%), Positives = 559/577 (97%), Gaps = 0/577 (0%)

Query  1    MNRKDWDFVNRQLAAKMLAELEYEQVFHAESQGDDRYCINLPDAKWHFSAERGIWGWLWI  60
            MN+KDWDFVNR+L AKML+E+EYEQVFHAESQGDD+YCINLP+A+W+F AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAHTLRCADEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLRARRGLTASD  120
            DA+TLRC+DEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLL+ARRGL+ASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIDLDADRLQCLLSGHPKFAFNKGRRGWGKAALERYAPEYANTFRLHWLAVKREHMVWRC  180
            LI+LDADRLQCLLSGHPKF FNKGRRGWGK ALERYAPEY+NTFRLHWLAVKREHM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSKLDIQQLLTAAMDPQEFARFNQVWQENGLDHDWLPLPVHPWQWQQKIALDFIADLAEG  240
            D+ LDIQQLLTAAMDPQEF+RF+QVWQENGLDH+WLPLPVHPWQWQQKIA DFIAD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDFWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYISAGPLASR  300
            RMVSLGEFGD WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YI+AGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQIFATDATLVQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPRCWLK  360
            WLQQ+FATDATLVQSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENP  WLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPILMATLMECDENNQPLIGAYIARSGLDAETWLTQLFQVVVVPLYHLLCRYGVALI  420
            PDESP+LMATLMECDENNQPL GAYI RSGLDAETWLTQLF+VVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKDGVPQRVLLKDFQGDMRLVKDEFPEMNSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEM+SLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLVARLGVPERRFYQLLAAVLSDYMQEHPQMSARFALFSLFKPQIIR  540
            QTGHFVTVLRF+SPL+ RLGVPERRFYQLLAAVLSDYM+ HPQM+ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLEDLQNPLWLATRN  577
            VVLNPVKLTWPD DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

30) CKO_00971 in NC_009792


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  873 bits (3305),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 532/577 (93%), Positives = 565/577 (98%), Gaps = 0/577 (0%)

Query  1    MNHKDWDFVNRQLVAKMLAELEYEQVFHAESQGDGRYCINLPGAQWRFRAERGIWGWLWI  60
            MNHKDWDFVNR+LVAKML+E+EYEQVFHAESQGD++YCINLPGAQWRF AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGlsasd  120
            DAQTLRC+DEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  lidldadrlQCLLSGHPKFAFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMVWRC  180
            LI+LDADRLQCLLSGHPKF FNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLTAAMDPQEFARFNQVWQDNGLDNDWLPLPVHPWQWQQKIALDFIADLAEG  240
            D++LDIQQLLTAAMDPQEF+RF+QVWQ+NGLD++WLPLPVHPWQWQQKIA DFIAD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDLWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
            RMVSLGEFGD WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLKQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATL QSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDETPILMATLMECDENNQPLIGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDE+P+LMATLMECDENNQPL GAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKEGVPQRVLLKDFQGDMRLVKDAFPEMDSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMKEGVPQRVLLK+FQGDMRLVK+AFPEMDSLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLMARLGVPERRFYQLLAAVLSDYMQEHPQMSARFALFSLFKPQIIR  540
            QTGHFVTVLRF+SPLM RLGVPERRFYQLLAAVLSDYM+ HPQM+ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLEDLQNPLWLATRD  577
            VVLNPVKLTWPD DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

31) KPN2242_25271 in NC_017541


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  870 bits (3296),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/577 (92%), Positives = 563/577 (98%), Gaps = 0/577 (0%)

Query  1    MNHKDWDFVNRQLVAKMLAELEYEQVFHAESQGDGRYCINLPGAQWRFSAERGIWGWLWI  60
            MNHKDWDFVNR+LVAKML+E+EYEQVFHAESQGD++YCINLPGAQWRF AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGlsasd  120
            DAQTLRC+DEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  lidldadrlQCLLSGHPKFAFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMVWRC  180
            LI+LDADRLQCLLSGHPKF FNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLAAAMDPQEFARFNQVWQDNGLDNDWLPLPVHPWQWQQKISLDFIADLAEG  240
            D++LDIQQLL+AAMDPQEF+RF+QVWQ+NGLD++WLPLPVHPWQWQQKI+ DFIAD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDLWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
            RMVSLGEFGD WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLKQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATL QSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPILMATLMECDENNQPLIGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESP+LMATLMECDENNQPL GAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKKGVPQRVLLKDFQGDMRLVKDAFPEMDSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMK GVPQRVLLK+FQGDMRLVK+AFPEMDSLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLMARLGVPERRFYQLLAAVLSDYMQEHPQMSARFALFSLFKPQIIR  540
            QTGHFVTVLRF+SPLM RLGVPERRFYQLLAAVLSDYM+ HPQM+ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWHDQDGGSRMLPNYLEDLQNPLWLATRD  577
            VVLNPVKLTW D DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

32) pK2044_01330 in NC_006625


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  870 bits (3296),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/577 (92%), Positives = 563/577 (98%), Gaps = 0/577 (0%)

Query  1    MNHKDWDFVNRQLVAKMLAELEYEQVFHAESQGDGRYCINLPGAQWRFSAERGIWGWLWI  60
            MNHKDWDFVNR+LVAKML+E+EYEQVFHAESQGD++YCINLPGAQWRF AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQTLRCADEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGlsasd  120
            DAQTLRC+DEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  lidldadrlQCLLSGHPKFAFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMVWRC  180
            LI+LDADRLQCLLSGHPKF FNKGRRGWGKEALERYAPEY+NTFRLHWLAVKREHM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLAAAMDPQEFARFNQVWQDNGLDNDWLPLPVHPWQWQQKISLDFIADLAEG  240
            D++LDIQQLL+AAMDPQEF+RF+QVWQ+NGLD++WLPLPVHPWQWQQKI+ DFIAD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDLWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
            RMVSLGEFGD WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDATLKQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPCRWLK  360
            WLQQVFATDATL QSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENPCRWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  PDESPILMATLMECDENNQPLIGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420
            PDESP+LMATLMECDENNQPL GAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKKGVPQRVLLKDFQGDMRLVKDAFPEMDSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMK GVPQRVLLK+FQGDMRLVK+AFPEMDSLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLMARLGVPERRFYQLLAAVLSDYMQEHPQMSARFALFSLFKPQIIR  540
            QTGHFVTVLRF+SPLM RLGVPERRFYQLLAAVLSDYM+ HPQM+ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWHDQDGGSRMLPNYLEDLQNPLWLATRD  577
            VVLNPVKLTW D DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

33) iucC in NC_021232


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  853 bits (3230),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/564 (91%), Positives = 542/564 (97%), Gaps = 0/564 (0%)

Query  1    MAKMLAELEYEQVFHAESQGDGRYCINLPDAQWCFSAERGIWGWLWIDAQTLCCADEPVL  60
            +AKML+E+EYEQVFHAESQGD++YCINLP+AQW F AERGIWGWLWIDAQTL C+DEPVL
Sbjct  14   VAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTLRCTDEPVL  73

Query  61   AQMLLMQLKPVLSMSDSTVAEHMQDLYATLLGDLQLLKARRGLSASDLIALDADRLQCLL  120
            AQ LLMQLKPVLSMSD+TVAEHMQDLYATLLGDLQLLKARRGLSASDLI LDADRLQCLL
Sbjct  74   AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINLDADRLQCLL  133

Query  121  SGHPKFAFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREYMVWRCDSELDIQQLLTAA  180
            SGHPKF FNKGRRGWGKEALERYAPEY+NTFRLHWLAVKRE M+WRCD++LDIQQLLTAA
Sbjct  134  SGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAA  193

Query  181  MDPQELARFNQVWQENGLDNNWLPLPVHPWQWQQKIAIDFIADLAEGRMVSLGEFGDLWL  240
            MDPQE++RF+QVWQENGLD+NWLPLPVHPWQWQQKIA DFIAD+AEGRMVSLGEFGD WL
Sbjct  194  MDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWL  253

Query  241  AQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQVFATDATLK  300
            AQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQVFATDATL 
Sbjct  254  AQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLV  313

Query  301  QSGAVILGEPAAGYVSHAGYAALVQAPYRYQEMLGVIWRENPCRWLKPDESPILMATLME  360
            QSGA+ILGEPAAGYVSH GYAAL +APYRYQ MLGVIWRENPCRWLKPDESP+LMATLME
Sbjct  314  QSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDESPVLMATLME  373

Query  361  CDENNQPLIGAYIDCSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKKG  420
            CDENNQPL GAYID SGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMK G
Sbjct  374  CDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEG  433

Query  421  VPQRVLLKDFQGDMRLVKDAFPEMDSLPQEVRDVTARLSADYLIHDLQTGHFVTVLRFVS  480
            VPQRVLLK+FQGDMRLVK+AFPEMDSLPQEVRDVT+RLSADYLIHDLQTGHFVTVLRF+S
Sbjct  434  VPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFIS  493

Query  481  PLMARLGVPERRFYQLLVAVLSDYMQEHPQMSARFALFSLFKPQIIRVVLNPVKLTWPDQ  540
            PLM RLGVPERRFYQLL AVLSDYM+ HPQM+ RFALFSLF+PQIIRVVLNPVKLTWPD 
Sbjct  494  PLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDL  553

Query  541  DGGSRMLPNYLEDLQNPLWLTTRD  564
            DGGSRMLPNYLE+LQNPLWL T++
Sbjct  554  DGGSRMLPNYLENLQNPLWLVTQE  577

34) Pecwa_0949 in NC_013421


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  841 bits (3184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/577 (85%), Positives = 546/577 (95%), Gaps = 0/577 (0%)

Query  1    MNRMDWEIVNRQLVAKMLAELEYEQVFHAESLGDDRYAINLPGAEWHFSAQRGIWGWLWI  60
            MN+ DW++VNR+LVAKML+E+EYEQVFHAES GDD+Y INLPGA+W+F A+RGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DHETLRCADEPVVAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLRNARRGMSAED  120
            D +TLRC+DEPV+AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQL +ARRG+SA D
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIALDADRLQCLLSGHPKFAFNKGRRGWGRDALTRYAPEYANTFQLHWLAVKRDNMVWRC  180
            LI LDADRLQCLLSGHPKF FNKGRRGWG++AL RYAPEY+NTF+LHWLAVKR++M+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSALDSEQLLTAAMDPQELARFHQAWQARGLDKSWLALPVHPWQWQQKIALDFVADLAEG  240
            D+ LD +QLLTAAMDPQE++RF Q WQ  GLD +WL+LPVHPWQWQQKIA DF+AD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDRWLAQQSLRTLTNASRQVGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
            RMVSLGEFGD+WLAQQSLRTLTNASR+ GLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDPTLQQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPFRWLK  360
            WLQQVFATD+TL QSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENP RWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  SDEIPILMATLMECDEHNRPLIGAYIAQSGMDAEAWLSQMFRVVVVPLYHLLCRYGVALI  420
            +DE P+LMATLMECDE+N+PL GAYI +SG+DAE+WL+Q+FRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKNGVPQRVLLKDFQGDMRLVKDEFPEMDSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLMVRLGVPERRFYQLLATVLSDYMQEHPQLSARFALFSLFRPQIIR  540
            QTGHFVTVLRF+SPLMVRLGVPERRFYQLLA+VLSDYM+ HPQ++ RFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTFPDQDGGSRMLPNYLEDLQNPLWLATKD  577
            VVLNPVKLT PD DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

35) iucC in NC_017531


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  841 bits (3185),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/577 (84%), Positives = 543/577 (95%), Gaps = 0/577 (0%)

Query  1    MNSHAWETVNRQLVAKMLAELEYEQVFQAQPQGDNRYCISLPGAEWQFTAERGIWGWLWI  60
            MN   W+ VNR+LVAKML+E+EYEQVF+A++QGD++YCI+LPGA+W+F AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQSLRCADEPVLAQTLLCQLQPVLSMSDATVAEHMQDLYATLRGDLQLMQARQGMSADA  120
            DAQ+LRC+DEPVLAQTLL QL+PVLSMSDATVAEHMQDLYATL GDLQL++AR+G+SA  
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIDMDADRLQCLLSGHPKFAFNKGRRGWGQEALARYAPEYMNTFRLHWLAVKRDHMVWRC  180
            LI++DADRLQCLLSGHPKF FNKGRRGWG+EAL RYAPEY NTFRLHWLAVKR+HM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLQAAMDSAEYTRFTEAWQAQGLDDSWLPLPVHPWQWQQKIALDFVADLATG  240
            D++LDIQQLL AAMD+ E+TRF++ WQ +GLD++WLPLPVHPWQWQQKIA DF+AD+A G
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  NMLSLGEFGDRWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
             M+SLGEFGD+WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQNVFATDTTLQQSGAVILGEPAAGYVSHRGYGALPEAPYRYQEMLGVIWRENPSRWLH  360
            WLQ+VFATD+TL QSGA+ILGEPAAGYVSH GY+AL+ APYRYQ MLGVIWRENP RWL 
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  ADETPILMATLMECDENNQPLIGAYIARSGLSAEAWLSQMFRVAVVPLYHLLCRYGVALI  420
            +DE+P+LMATLMECDENNQPL GAYI RSGL AE+WL+Q+FRV VVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKDGVPQRVLLKDFQGDMRLVKDDFPEMDSLPQDVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQ+VRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMARLGVPERRFYQLLAAVLSDYMQDHPQLSARFALFSLFKPQIIR  540
            QTGHFVTVLRFISPLM RLGVPERRFYQLLAAVLSDYM+ HPQ++ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTKD  577
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVT++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

36) iucC in NC_013956


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  841 bits (3185),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/577 (84%), Positives = 543/577 (95%), Gaps = 0/577 (0%)

Query  2    MNSHAWETVNRQLVAKMLAELEYEQVFQAQPQGDNRYCISLPGAEWQFTAERGIWGWLWI  61
            MN   W+ VNR+LVAKML+E+EYEQVF+A++QGD++YCI+LPGA+W+F AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  62   DAQSLRCADEPVLAQTLLCQLQPVLSMSDATVAEHMQDLYATLRGDLQLMQARQGMSADA  121
            DAQ+LRC+DEPVLAQTLL QL+PVLSMSDATVAEHMQDLYATL GDLQL++AR+G+SA  
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  122  LIDMDADRLQCLLSGHPKFAFNKGRRGWGQEALARYAPEYMNTFRLHWLAVKRDHMVWRC  181
            LI++DADRLQCLLSGHPKF FNKGRRGWG+EAL RYAPEY NTFRLHWLAVKR+HM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  182  DSELDIQQLLQAAMDSAEYTRFTEAWQAQGLDDSWLPLPVHPWQWQQKIALDFVADLATG  241
            D++LDIQQLL AAMD+ E+TRF++ WQ +GLD++WLPLPVHPWQWQQKIA DF+AD+A G
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  242  NMLSLGEFGDRWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  301
             M+SLGEFGD+WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  302  WLQNVFATDTTLQQSGAVILGEPAAGYVSHRGYGALPEAPYRYQEMLGVIWRENPSRWLH  361
            WLQ+VFATD+TL QSGA+ILGEPAAGYVSH GY+AL+ APYRYQ MLGVIWRENP RWL 
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  362  ADETPILMATLMECDENNQPLIGAYIARSGLSAEAWLSQMFRVAVVPLYHLLCRYGVALI  421
            +DE+P+LMATLMECDENNQPL GAYI RSGL AE+WL+Q+FRV VVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  422  AHGQNITLAMKDGVPQRVLLKDFQGDMRLVKDDFPEMDSLPQDVRDVTARLSADYLIHDL  481
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQ+VRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  482  QTGHFVTVLRFISPLMARLGVPERRFYQLLAAVLSDYMQDHPQLSARFALFSLFKPQIIR  541
            QTGHFVTVLRFISPLM RLGVPERRFYQLLAAVLSDYM+ HPQ++ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  542  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTKD  578
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVT++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

37) PAGR_g3925 in NC_017554


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  841 bits (3185),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/577 (84%), Positives = 543/577 (95%), Gaps = 0/577 (0%)

Query  1    MNSHAWETVNRQLVAKMLAELEYEQVFQAQPQGDNRYCISLPGAEWQFTAERGIWGWLWI  60
            MN   W+ VNR+LVAKML+E+EYEQVF+A++QGD++YCI+LPGA+W+F AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQSLRCADEPVLAQTLLCQLQPVLSMSDATVAEHMQDLYATLRGDLQLMQARQGMSADA  120
            DAQ+LRC+DEPVLAQTLL QL+PVLSMSDATVAEHMQDLYATL GDLQL++AR+G+SA  
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIDMDADRLQCLLSGHPKFAFNKGRRGWGQEALARYAPEYMNTFRLHWLAVKREHMVWRC  180
            LI++DADRLQCLLSGHPKF FNKGRRGWG+EAL RYAPEY NTFRLHWLAVKREHM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLQAAMDSAEYTRFTEAWQAQGLDDSWLPLPVHPWQWQQKIALDFVADLATG  240
            D++LDIQQLL AAMD+ E+TRF++ WQ +GLD++WLPLPVHPWQWQQKIA DF+AD+A G
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  NMLSLGEFGDRWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
             M+SLGEFGD+WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQNVFATDTTLQQSGAVILGEPAAGYVSHRGYGALPEAPYRYQEMLGVIWRENPSRWLH  360
            WLQ+VFATD+TL QSGA+ILGEPAAGYVSH GY+AL+ APYRYQ MLGVIWRENP RWL 
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  ADETPILMATLMECDENNQPLIGAYIARSGLSAEAWLSQMFRVAVVPLYHLLCRYGVALI  420
            +DE+P+LMATLMECDENNQPL GAYI RSGL AE+WL+Q+FRV VVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKDGVPQRVLLKDFQGDMRLVKDDFPEMDSLPQDVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQ+VRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMARLGVPERRFYQLLAAVLSDYMQDHPQLSARFALFSLFKPQIIR  540
            QTGHFVTVLRFISPLM RLGVPERRFYQLLAAVLSDYM+ HPQ++ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTKD  577
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVT++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

38) W5S_0840 in NC_017845


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  840 bits (3181),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/577 (85%), Positives = 546/577 (95%), Gaps = 0/577 (0%)

Query  1    MNRMDWEIVNRQLVAKMLAELEYEQVFHAESLGDDRYAINLPGAEWHFSAQRGIWGWLWI  60
            MN+ DW++VNR+LVAKML+E+EYEQVFHAES GDD+Y INLPGA+W+F A+RGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DHETLRCADEPVVAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLRNARRGMSAED  120
            D +TLRC+DEPV+AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQL +ARRG+SA D
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIALDADRLQCLLSGHPKFAFNKGRRGWGRDALTRYAPEYANTFQLHWLAVKRDNMVWRC  180
            LI LDADRLQCLLSGHPKF FNKGRRGWG++AL RYAPEY+NTF+LHWLAVKR++M+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSALDGEQLLTAAMDPQELARFHQAWQARGLDKSWLALPVHPWQWQQKIALDFVADLAEG  240
            D+ LD +QLLTAAMDPQE++RF Q WQ  GLD +WL+LPVHPWQWQQKIA DF+AD+AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  RMVSLGEFGDRWLAQQSLRTLTNASRQVGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
            RMVSLGEFGD+WLAQQSLRTLTNASR+ GLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQQVFATDPTLQQSGAVILGEPAAGYVSHEGYAALAQAPYRYQEMLGVIWRENPFRWLK  360
            WLQQVFATD+TL QSGA+ILGEPAAGYVSHEGYAALA+APYRYQ MLGVIWRENP RWLK
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  SDEIPILMATLMECDEHNRPLIGAYIAQSGMDAEAWLSQMFRVVVVPLYHLLCRYGVALI  420
            +DE P+LMATLMECDE+N+PL GAYI +SG+DAE+WL+Q+FRVVVVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKNGVPQRVLLKDFQGDMRLVKDEFPEMDSLPQEVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQEVRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFVSPLMVRLGVPERRFYQLLATVLSDYMQEHPQLSARFALFSLFRPQIIR  540
            QTGHFVTVLRF+SPLMVRLGVPERRFYQLLA+VLSDYM+ HPQ++ RFALFSLFRPQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTFPDQDGGSRMLPNYLEDLQNPLWLATKD  577
            VVLNPVKLT PD DGGSRMLPNYLE+LQNPLWL T++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

39) iucC in NC_016816


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  840 bits (3181),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/577 (84%), Positives = 542/577 (94%), Gaps = 0/577 (0%)

Query  1    MNSHAWETVNRQLVAKMLAELEYEQVFQAQPQGDNRYCISLPGAEWQFTAERGIWGWLWI  60
            MN   W+ VNR+LVAKML+E+EYEQVF+A++QGD++YCI+LPGA+W+F AERGIWGWLWI
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   DAQSLRCADEPVLAQTLLCQLQPVLSMSDATVAEHMQDLYATLRGDLQLMQARQGMSADA  120
            DAQ+LRC+DEPVLAQTLL QL+PVLSMSDATVAEHMQDLYATL GDLQL++AR+G+SA  
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  121  LIDMDADRLQCLLSGHPKFAFNKGRRGWGQEALARYAPEYMNTFRLHWLAVKRDHMVWRC  180
            LI++DADRLQCLLSGHPKF FNKGRRGWG+EAL RYAPEY NTFRLHWLAVKR+HM+WRC
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  181  DSELDIQQLLQAAMDRAEYTRFTEAWQAQGLDDSWLPLPVHPWQWQQKIALDFVADLATG  240
            D++LDIQQLL AAMD  E+TRF++ WQ +GLD++WLPLPVHPWQWQQKIA DF+AD+A G
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  241  NMLSLGEFGDRWLAQQSLRTLTNASRQGGLDIKLPLTIYNTSCYRGIPGKYIAAGPLASR  300
             M+SLGEFGD+WLAQQSLRTLTNASR+GGLDIKLPLTIYNTSCYRGIPG+YIAAGPLASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  301  WLQNVFATDTTLQQSGAVILGEPAAGYVSHRGYGALPEAPYRYQEMLGVIWRENPSRWLH  360
            WLQ+VFATD+TL QSGA+ILGEPAAGYVSH GY+AL+ APYRYQ MLGVIWRENP RWL 
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  361  ADETPILMATLMECDENNQPLIGAYIARSGLSAEAWLSQMFRVAVVPLYHLLCRYGVALI  420
            +DE+P+LMATLMECDENNQPL GAYI RSGL AE+WL+Q+FRV VVPLYHLLCRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  421  AHGQNITLAMKDGVPQRVLLKDFQGDMRLVKDDFPEMDSLPQDVRDVTARLSADYLIHDL  480
            AHGQNITLAMK+GVPQRVLLK+FQGDMRLVK+ FPEMDSLPQ+VRDVT+RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  481  QTGHFVTVLRFISPLMARLGVPERRFYQLLAAVLSDYMQDHPQLSARFALFSLFKPQIIR  540
            QTGHFVTVLRFISPLM RLGVPERRFYQLLAAVLSDYM+ HPQ++ RFALFSLF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  541  VVLNPVKLTWPDQDGGSRMLPNYLENLQNPLWLVTKD  577
            VVLNPVKLTWPD DGGSRMLPNYLENLQNPLWLVT++
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

40) D781_0885 in NC_020064


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  671 bits (2538),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/573 (67%), Positives = 481/573 (84%), Gaps = 1/573 (0%)

Query  8    DWQHVNRQMIAKILAELEYERTLRAEAEQDG-WRITLGDAVYRFRARRGIWGWLHIDADS  66
            DW+ VNR+++AK+L+E+EYE+ ++AE++ D+   I L +A  RF A RGIWGWL IDA++
Sbjct  5    DWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQT  64

Query  67   LSCGDQPLAADQTLRQLAQVLNMNDAQIAEHLEDLYATLRGDLQLRAARHGMSAQDLIAL  126
            L C D+P+ A+  L QL  VL+M+DA +AEH++DLYATL GDLQL  AR+G+SA DLI L
Sbjct  65   LRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  127  DPDELQCLLAGHPKFIFNKGRRGWGLEALQRYAPEYQGQFRLHWVAARRDSFVWCADDDY  186
            D+D LQCLL+GHPKF+FNKGRRGWG EAL+RYAPEY   FRLHW+A +R+  +W  D+D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  187  PLDNLLDSVMDVSERQRFDRRWRELQLTQDWIPLPLHPWQWQQKVALHFLPQLASGELVE  246
             +++LL + MD  E  RF + W+E  L ++W+PLP+HPWQWQQK+A +F++++A G +V 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  247  LGEFGDDYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYIGAGPAASRWLQQ  306
            LGEFGD+ LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  307  IFAADGTLRASGAQILGEPAAGYMAHPTYASLPQAPYRYQEMLGVIWRENPSGYLQEGEQ  366
            +FA+D+TL  SGA ILGEPAAGY++H  YA+L++APYRYQ MLGVIWRENP   L+ +E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  367  AILMATLMETDNHGQPLIAAYIERSGLSVEAWLSQMFRAVVIPMYHLMCRYGVALIAHGQ  426
            ++LMATLME D++ QPL +AYI+RSGL  E+WL+Q+FR VV+P+YHL+CRYGVALIAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  427  NITLVMKDHVPQRVLLKDFQGDMRLVDQEFAEAASLPQSVKDVTVRLPADYLIHDLQTGH  486
            NITL MK+ VPQRVLLK+FQGDMRLV + F+E  SLPQ V+DVT RL+ADYLIHDLQTGH
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  487  FVTVLRFISPLMAACQLSEERFYQLLATVLQDYMAQHPDMAERFALFSLFKPQIIRVVLN  546
            FVTVLRFISPLM    ++E RFYQLLA+VL DYM +HP+MAERFALFSLF+PQIIRVVLN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  547  PVKLTYSEHDGGSRMLPNYLQDLDNPLYLVTKE  579
            PVKLT ++ DGGSRMLPNYL++L+NPL LVT+E
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

41) M621_04280 in NC_021659


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  670 bits (2533),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/578 (67%), Positives = 476/578 (83%), Gaps = 1/578 (0%)

Query  5    DYANWQRVNRQMIAKILAELEYERTLCAEQH-DGQWRIALGDASYTFSAERGIWGWLHID  63
            +  +W+ VNR+++AK+L+E+EYE+ + AE + D++  I L +A   F AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   AASLTCDRQPLAADQTLRQLAQVLKMDDAQIAEHLEDLYATLRGDMQLLSARHGMSAQDL  123
            A +L C  +P+ A+  L QL  VL M DA +AEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALDADSLQCLLAGHPKFIFNKGRRGWGLTALQQYAPEYQGQFRLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  DNYPLENLLGSAMTGDERQRFDRRWHELELNDDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  +++LL +AM  +E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LVELGEFGDSYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            +V LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAEDSTLRASGAEILGEPAAGYMTHQTYAALAKAPYRYQEMLGVIWRENPSCYLRD  363
            LQQVFA D+TL  SGA ILGEPAAGY++H+ YAALA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIGAYIARSGLSAEAWLQQMFSVVVLPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL GAYI RSGL AE+WL Q+F VVV+P+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEAASLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSESRFYQLLAQVLERYMAQHPDMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL  YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

42) iucC in NC_021591


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/578 (67%), Positives = 476/578 (83%), Gaps = 1/578 (0%)

Query  5    DYANWQRVNRQMIAKILAELEYERTLCAEQH-DGQWRIALGDASYTFSAERGIWGWLHID  63
            +  +W+ VNR+++AK+L+E+EYE+ + AE + D++  I L +A   F AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   AASLACDRQPLAADQTLRQLAQVLKMDDAQIAEHLEDLYATLRGDMQLLSARHGMSAQDL  123
            A +L C  +P+ A+  L QL  VL M DA +AEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALDADSLQCLLAGHPKFIFNKGRRGWGLTALQQYAPEYQGQFRLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  DNYPLENLLGSAMTGDERQRFDRRWRELELNDDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  +++LL +AM  +E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LVELGEFGDSYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            +V LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAEDSTLRASGAEILGEPAAGYMTHQTYAALAKAPYRYQEMLGVIWRENPSCYLRD  363
            LQQVFA D+TL  SGA ILGEPAAGY++H+ YAALA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIGAYIARSGLSAEAWLQQMFSVVVLPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL GAYI RSGL AE+WL Q+F VVV+P+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEAASLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSESRFYQLLAQVLERYMAQHPDMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL  YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

43) ESA_pESA3p05549 in NC_009780


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  660 bits (2496),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/573 (67%), Positives = 471/573 (83%), Gaps = 1/573 (0%)

Query  6    WERVNREMVAKMLAELEYERTLTAQETDAERWTIALGDETWTFDAKRGIWGWLHINPATL  65
            W+ VNR +VAKML+E+EYE+ + A+  + ++  I L +  W F A RGIWGWL I++ TL
Sbjct  6    WDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTL  65

Query  66   ANESGSAIEAESALRQLAVVLKMSDAQTAEHLEDLYATLRGDMQLLQAREGLNADALVDM  125
                 + + A++ L QL  VL MSDA  AEH++DLYATL GD+QLL+AR GL+A  L+++
Sbjct  66   RCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  126  DPDELQCLMSGHPKFIFNKGRRGWGLDALKAYAPEYRGRFRLHWVAVRRDLMIWSSDADC  185
            D+D LQCL+SGHPKF+FNKGRRGWG +AL  YAPEY   FRLHW+AV+R+ MIW  D D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  186  DINNLLASAMDDSERQRFTRYWQALTLDDHWLPVPLHPWQWQQKIALHFLPQLARGEIID  245
            DI++LL++AMD  E  RF++ WQ   LD++WLP+P+HPWQWQQKIA +F++++A G ++ 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  246  LGVFGDEYIAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQ  305
            LG FGD+ +AQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  306  QFAADKTLLALGAQILGEPAAGYVTHTGYAALQTAPYRYQEMFGVIWRENPSCWLRPGEQ  365
             FA+D TL+  GA ILGEPAAGYV+H GYAAL  APYRYQ M+GVIWRENP  WL+P+E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  366  AVLMAALMETDNAGRPLIDAWIARSGLSAEAWLSQLFRVVVIPFYHLLCRYGVAMIAHGQ  425
            +VLMA+LME D+  +PL +A I RSGL AE+WL+QLFRVVV+P+YHLLCRYGVA+IAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  426  NVTLVMKDHVPQRILLKDFQGDMRLVDETFPEMESLPEPVKAVTARLSADYIIHDLQTGH  485
            N+TL MK+ VPQR+LLK+FQGDMRLV E+FPEM+SLP+ V+ VT+RLSADY+IHDLQTGH
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  486  FVTVLRFVSRLTEQCGVSETRFYRLLADVLQDYMAAHPEMAARFALFDLFKPQIIRVVLN  545
            FVTVLRF+S L  + GV+E RFY+LLA VL DYM  HP+MA RFALF LF+PQIIRVVLN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  546  PVKLTFSEHDGGSRMLPNYLTDLDNPLYLVTRE  578
            PVKLT ++ DGGSRMLPNYL +L+NPL LVT+E
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

44) CSSP291_21028 in NC_020263


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/578 (66%), Positives = 471/578 (82%), Gaps = 1/578 (0%)

Query  1    MTASLWERVNREMVAKMLAELEYERTLTAQETDAERWTIALGDETWKFDAKRGIWGWLHI  60
            M    W+ VNR +VAKML+E+EYE+ + A+  + ++  I L +  W+F A RGIWGWL I
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  61   NPATLANESGSAIEAESALRQLAVVLKMSDAQTAEHLEDLYATLRGDMQLLDARKELNAD  120
            ++ TL     + + A++ L QL  VL MSDA  AEH++DLYATL GD+QLL AR+ L+A 
Sbjct  61   DAQTLRCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSAS  119

Query  121  ALIDMDPDELQCLMSGHPKFIFNKGRRGWGLDALKAYAPEYRGRFRLHWVAVRRDLMVWS  180
             LI++D+D LQCL+SGHPKF+FNKGRRGWG +AL  YAPEY   FRLHW+AV+R+ M+W 
Sbjct  120  DLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWR  179

Query  181  SDADCDINNLLASAMDDSERQRFTRYWQALHLDDHWLPVPLHPWQWQQKIALHFLPQLAR  240
             D D DI++LL++AMD  E  RF++ WQ   LD++WLP+P+HPWQWQQKIA +F++++A 
Sbjct  180  CDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAE  239

Query  241  GEIIDLGVFGDEYIAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYIAAGPLAS  300
            G ++ LG FGD+ +AQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YIAAGPLAS
Sbjct  240  GRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLAS  299

Query  301  RWLQQQFAADKTLLALGAQILGEPAAGYVTHTGYAALKTAPYRYQEMFGVIWRENPSCWL  360
            RWLQQ FA+D TL+  GA ILGEPAAGYV+H GYAAL  APYRYQ M+GVIWRENP  WL
Sbjct  300  RWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWL  359

Query  361  RPGEQAVLMAALMETDNAGRPLIDAWIARSGLSAEAWLAQLFRVVVIPFYHLLCRYGVAL  420
            +P+E +VLMA+LME D+  +PL +A I RSGL AE+WL+QLFRVVV+P+YHLLCRYGVAL
Sbjct  360  KPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVAL  419

Query  421  IAHGQNVTLVMKDHVPQRILLKDFQGDMRLVDETFPEMESLPEPVKAVTARLSADYIIHD  480
            IAHGQN+TL MK+ VPQR+LLK+FQGDMRLV E+FPEM+SLP+ V+ VT+RLSADY+IHD
Sbjct  420  IAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHD  479

Query  481  LQTGHFVTVLRFVSRLTEQCGVSENRFYRLLADVLQDYMAAHPEMAARFARFDLFKPQII  540
            LQTGHFVTVLRF+S L  + GV+E RFY+LLA VL DYM  HP+MA RFA F LF+PQII
Sbjct  480  LQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQII  539

Query  541  RVVLNPVKLTFSEHDGGSRMLPNYLTDLDNPLYLVTRE  578
            RVVLNPVKLT ++ DGGSRMLPNYL +L+NPL LVT+E
Sbjct  540  RVVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

45) A1122_00015 in NC_017168


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

46) iucC in NC_010159


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

47) YPA_0272 in NC_008150


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

48) iucC in NC_017265


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

49) iucC in NC_005810


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

50) iucC in NC_003143


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

51) iucC in NC_017154


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

52) iucC in NC_017160


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

53) iucC in NC_004088


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

54) YPN_3190 in NC_008149


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

55) YPDSF_0526 in NC_009381


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

56) iucC in NC_014029


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

57) iucC in NC_009708


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    NYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            N  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKEVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V++VT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

58) iucC in NC_006155


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKEVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V++VT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

59) YPK_0784 in NC_010465


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 376/576 (66%), Positives = 470/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESGAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +SGA ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

60) iucC in NC_013283


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  657 bits (2482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 382/578 (67%), Positives = 467/578 (81%), Gaps = 1/578 (0%)

Query  2    MTPERWDRVNREMVAKILAELEYERTLTAQEIGAGRWAIALGNETWTFDAKRGIWGWLHI  61
            M    WD VNR +VAK+L+E+EYE+ + A+  G ++  I L    W F A RGIWGWL I
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  62   NPATLANESGSAIEAESALRQLAVVLKMSDAQTAEHLEDLYATLRGDLQLLQAREGLDAD  121
            ++ TL     + + A++ L QL  VL MSDA  AEH++DLYATL GDLQLL+AR GL A 
Sbjct  61   DAQTLRCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSAS  119

Query  122  ALIDMDPDELQCLMSGHPKFIFNKGRRGWGLDALKAYAPEYRGRFRLHWVAVRRDLMVWS  181
             LI++D+D LQCL+SGHPKF+FNKGRRGWG +AL  YAPEY   FRLHW+AV+R+ M+W 
Sbjct  120  DLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWR  179

Query  182  SDADCDINNLLASAMDDGERQRFTRYWQALHLDENWLPVPLHPWQWQQKIALHFLPQLAR  241
             D D DI++LL++AMD  E  RF++ WQ   LD+NWLP+P+HPWQWQQKIA +F++++A 
Sbjct  180  CDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAE  239

Query  242  GEIIDLGVFGDEYIAQQSLRTLTNVSRRSSFDIKLPLTIYNTSCYRGIPGKYIAAGPLAS  301
            G ++ LG FGD+ +AQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YIAAGPLAS
Sbjct  240  GRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLAS  299

Query  302  RWLQQQFAGDKTLLALGAQILGEPAAGYVTHTGYAALKTAPYRYQEMFGVIWRENPSCWL  361
            RWLQQ FA D TL+  GA ILGEPAAGYV+H GYAAL  APYRYQ M+GVIWRENP  WL
Sbjct  300  RWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWL  359

Query  362  KTGEQAVLMAALMETDNTGRPLIDAWIARSGLSAEAWLTQLFRVVVIPFYHLLCRYGVAL  421
            K +E +VLMA+LME D+  +PL +A I RSGL AE+WLTQLFRVVV+P+YHLLCRYGVAL
Sbjct  360  KPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVAL  419

Query  422  IAHGQNVTLVMKDHVPQRILLKDFQGDMRLVDETFPEMESLPEPVKAVTARLGADYIIHD  481
            IAHGQN+TL MK+ VPQR+LLK+FQGDMRLV E+FPEM+SLP+ V+ VT+RL+ADY+IHD
Sbjct  420  IAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHD  479

Query  482  LQTGHFVTVLRFVSRLTEQCGVSETRFYRLLADVLQDYMAAHPEMTARFALFDLFKPQII  541
            LQTGHFVTVLRF+S L  + GV+E RFY+LLA VL DYM  HP+M+ RFALF LF+PQII
Sbjct  480  LQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQII  539

Query  542  RVVLNPVKLTFAEHDGGSRMLPNYLTDLDNPLYRVTRE  579
            RVVLNPVKLT ++ DGGSRMLPNYL +L+NPL  VT+E
Sbjct  540  RVVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

61) YPTS_3401 in NC_010634


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  655 bits (2475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/576 (65%), Positives = 469/576 (82%), Gaps = 1/576 (0%)

Query  5    DYANWQQVNRHMIAKILSELEYERTLHAELHGETG-RITLPGAVYTFNGKRGIWGWLHID  63
            +  +W+ VNR+++AK+LSE+EYE+ +HAE +G+    I LPGA   F + RGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLRCEGVPLAADHMLRQLALVLKMDDSQVAEHLEDLYATLRGDMQLLSARHGMSAEAL  123
            + TLRC + P+ A+ +L QL  VL M D+ VAEH++DLYATL GD+QLL AR+G+SA  L
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  IALNDDALQCLLAGHPKFIFNKGRRGWGLTALQHYAPEYQGQFRLHWVAAKRGSFIWCVD  183
            I L+ D LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   IW  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  AEYPLDNLLNSAMDPAERQRFDRRWRECQLNDDWVPVPLHPWQWQQKIALHFLPQLAEGE  243
             +  +++LL +AMDP E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDHYLAQQSLRTLTNVSRRVPFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD+ LAQQSLRTLTN SRR  +DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAQDRTLHESRAEILGEPAAGYMLHQTYATLAKAPYRCQEMLGVIWRENPSCYLRE  363
            LQQVFA D TL +S A ILGEPAAGY+ H+ YA+LA+APYR Q MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEHAILMATLMETNNQGHPLIAAYIARSGLSAEAWLEQMFRVVVVPMYHLMCCYGVALIA  423
            +E ++LMATLME +++ +PL +AYI RSGL AE+WL Q+FRVVVVP+YHL+C YGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHAPQRILLKDFQGDMRLVDKDFPQAASLPNVVKEVTVRLSADYLIHDLQ  483
            HGQNITL MK+  PQR+LLK+FQGDMRLV   FP+  SLP+ V++VT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACNLSEYRFYQLLAQVLERYMAQHPDLADRFTLFNLFKPQIIRV  543
            TGHFVTVLRFISPLM    ++E RFYQLLA VL  YM +HP++A+RF+LF+LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPDYLQDLDNPLYLVTKE  579
            VLNPVKLT ++ DGGSRMLP+YL++L+NPL LVT+E
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

62) iucC in NC_016514


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  650 bits (2456),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/573 (66%), Positives = 469/573 (82%), Gaps = 1/573 (0%)

Query  5    WQKVNRDMVAKILAELEYERTLSARQLADNRWQITMGAETWQFQATRGIWGWLHIDPESL  64
            W+ VNR +VAK+L+E+EYE+ + A   +D++  I + +  W+F A RGIWGWL ID+++L
Sbjct  6    WDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTL  65

Query  65   TTVSGVAVDAETALLQLATVLEMSDAQTAEHLEDLYATLRGDIQLLQARETLDADALIHL  124
                  +V A+T L+QL  VL MSDA  AEH++DLYATL GD+QLL+AR  L A  LI+L
Sbjct  66   RCTDE-PVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  125  DPDELQCLMSGHPKFIFNKGRRGWGLDALRQYAPEYRGRFRLHWVAVQRAHLVWSSDVDC  184
            D+D LQCL+SGHPKF+FNKGRRGWG +AL +YAPEY   FRLHW+AV+R H++W  D D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  185  DINTLLASAMDNAERARFDARWQALDLDDNWLPVPLHPWQWQQKIAVHFLAQLARGEMVE  244
            DI+ LL++AMD  E +RF   WQ  +LD+NWLP+P+HPWQWQQKIA +F+A++A G MV 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  245  LGEFGDEYLAQQSLRTLTNASRRTPFDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQ  304
            LGEFGD+ LAQQSLRTLTNASRR  +DIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  305  QFASDATLIRCGAQVLGEPAAGYLSHPGYAALPKAPYRYQEMLGVIWRENPSCYLQQGEE  364
             FA+DATL++ GA +LGEPAAGY+SH GYAAL++APYRYQ MLGVIWRENP   L+ +E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  365  AVLMAALMESDNAGRPLIDAWIAQSGLTAEAWLEKLFDATVIPFYHLLCRYGVALIAHGQ  424
            +VLMA+LME D+  +PL +A I +SGL AE+WL +LF   V+P+YHLLCRYGVALIAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  425  NVTLVMKDAIPQRILLKDFQGDMRLVDEDFPQAASLPEQVKSVTARLSADYIIHDLQTGN  484
            N+TL MK+++PQR+LLK+FQGDMRLV E FP+  SLP++V+ VT+RLSADY+IHDLQTG+
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  485  FVTVLRFISRLTLQSGVSETRFYQILAEVLRRYMAAHPDLAERFAKFDLFKPQIIRVILN  544
            FVTVLRFIS L ++ GV+E RFYQ+LA VL  YM  HP++AERFA F LF+PQIIRV+LN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  545  PVKLTFSEHDGGSRMLPNYVTDLDNPLFLVSQE  577
            PVKLT ++ DGGSRMLPNY+ +L+NPL LV+QE
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

63) M495_03885 in NC_021741


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  648 bits (2448),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/579 (68%), Positives = 479/579 (83%), Gaps = 1/579 (0%)

Query  4    VDYADWQRVNRQMIAKILAELEYERTLQAEQHGE-QWRILLGDAQYSFSAERGIWGWLHI  62
            ++  DW+ VNR+++AK+L+E+EYE+ ++AE +G+ +  I L +AQ  F AERGIWGWL I
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWI  60

Query  63   DPATLTCDQSPLAADQTLRQLAQVLKMDDAQVAEHLEDLYATLRGDMQLLSARHGMSaqd  122
            D+ TL C + P+ A+  L QL  VL M DA VAEH++DLYATL GD+QLL AR+G+SA D
Sbjct  61   DAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD  120

Query  123  lialdadalqcllaGHPKFIFNKGRRGWGLTALHQYAPEYQGQFQLHWVAAKRGSFVWCA  182
            LI LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   F+LHW+A KR   +W  
Sbjct  121  LINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRC  180

Query  183  DEEYSLDNLLNSAMDSAERQRFDRRWRELKLTHDWIPVPLHPWQWQQKIALHFLPQLAEG  242
            D++  +++LL +AMD+ E  RF + W+E  L H+W+P+P+HPWQWQQKIA +F++++AEG
Sbjct  181  DNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEG  240

Query  243  DLVELGEFGDSYLAQQSLRTLTNISRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASR  302
             +V LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASR
Sbjct  241  RMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASR  300

Query  303  WLQQIFTEDDTLSASGAEILGEPAAGYMTHPTYASLAKAPYRYQEMLGVIWRENPSCYLQ  362
            WLQQ+F+ D TL  SGA ILGEPAAGY++H  YA+LA+APYRYQ MLGVIWRENP   L+
Sbjct  301  WLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLK  360

Query  363  EGEQAILMATLMETDNHGQPLIAAYIARSGLSAEAWLQQMFRVVVVPMYHLMCRYGVALI  422
             +E ++LMATLME D++ QPL +AYI RSGL AE+WL Q+FRVVVVP+YHL+CRYGVALI
Sbjct  361  PDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI  420

Query  423  AHGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEATSLPKVVRDVTVRLSADYLIHDL  482
            AHGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ VRDVT RLSADYLIHDL
Sbjct  421  AHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDL  480

Query  483  QTGHFVTVLRFISPLMKACGVSETRFYQLLAQVLKGYMAQHPDMAERFALFDLFKPQIIR  542
            QTGHFVTVLRFISPLM   GV+E RFYQLLA VL +YM +HP+MAERFALF LF+PQIIR
Sbjct  481  QTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIR  540

Query  543  VVLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VVLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  541  VVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

64) ECENHK_14310 in NC_018405


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/573 (66%), Positives = 473/573 (83%), Gaps = 1/573 (0%)

Query  5    WQKVNREMVAKILAELEYERTLRAEWVSSDGWRITMGSESWQFRATRGIWGWLHIDPDTL  64
            W+ VNR +VAK+L+E+EYE+ ++AE  + D   I + +  W+F A RGIWGWL ID++TL
Sbjct  6    WDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTL  65

Query  65   TTASGAAVEAESALLQLATVLEMSDAQTAEHMEDLYATLRGDIQLLQAREALDADALIHL  124
              +  + + A++ L+QL  VL MSDA  AEHM+DLYATL GD+QLL+AR +L A  LI+L
Sbjct  66   RCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  125  DPDELQCLMSGHPKFIFNKGRRGWGLDALHQYAPEYRGRFRLHWVAVQREHLVWSSDADC  184
            D+D LQCL+SGHPKF+FNKGRRGWG +AL++YAPEY   FRLHW+AV+REH++W  D D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  185  DIQNLLASTMDNAERVRFEHRWQALGLDESWLPVPLHPWQWQQKIAIHFLAQLSRGEMVE  244
            DIQ+LL+++MD  E  RF + WQ  GLD++WLP+P+HPWQWQQKIA +F+A+++ G MV 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  245  LGEFGDEYLAQQSLRTLTNASRRAPFDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQ  304
            LGEFGD+ LAQQSLRTLTNASRR+ +DIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  305  QFASDATLIRCGAQVLGEPAAGYLSHPGYAALPKAPYRYQEMLGVIWRENPSCYLEDGEQ  364
             FA+DATL++ GA +LGEPAAGY+SH GYAAL++APYRYQ MLGVIWRENP   L  +E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  365  AVLMAALMETDNAGRPLIDAWIKRSGLSADAWLEKLFDATVIPFYHLLCRYGVALIAHGQ  424
            +VLMA+LME D+  +PL +A I RSGL A++WL +LF   V+P+YHLLCRYGVALIAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  425  NVTLVMKDYVPQRILLKDFQGDMRLVDKDFPQAQSLPAQVKAVTARLSADYIIHDLQTGN  484
            N+TL MK+ VPQR+LLK+FQGDMRLV   FP+ +SLP +V+ VT+RLSADY+IHDLQTG+
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  485  FVTVLRFISRLTLQCGVSEIRFYQILAGVLRRYMAAHPELAERFAMFDLFKPQIIRVILN  544
            FVTVLRFIS L ++ GV+E RFYQ+LA+VL  YM  HP++AERFA+F LF+PQIIRV+LN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  545  PVKLTFSEHDGGSRMLPNYVTDLDNPLFLASRE  577
            PVKLT ++ DGGSRMLPNY+ +L+NPL L ++E
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

65) Spro_0920 in NC_009832


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/578 (68%), Positives = 478/578 (83%), Gaps = 1/578 (0%)

Query  5    DYADWQRVNRQMIAKILAELEYERALQAEHH-DGQWHIALGDAHYRFSAERGIWGWLHID  63
            +  DW+ VNR+++AK+L+E+EYE+ ++AE + D++  I L +A+ RF AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   PATLACDQSPLAADQTLRQLAQVLKMDDAQVAEHLEDLYATLRGDMQLLSARHGMSaqdl  123
            + TL C + P+ A+  L QL  VL M DA VAEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  ialdadalqcllaGHPKFIFNKGRRGWGLTALQQYAPEYQGQFRLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   FRLHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  EEYPLTQLLDSAMDSAERQRFDHRWRELKLTHDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  + QLL +AMD+ E  RF + W+E  L H+W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LVELGEFGDNYLAQQSLRTLTNISRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            +V LGEFGD+ LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQIFSEDSTLRASGAEILGEPAAGYMTHPTYASLAKAPYRYQEMLGVIWRENPSCYLQE  363
            LQQ+F+ D+TL  SGA ILGEPAAGY++H  YA+LA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIAAYIARSGLSAEAWLQQMFSVVVLPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL +AYI RSGL AE+WL Q+F VVV+P+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDKDFPEAATLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV   FPE  +LP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSEARFYQLLAQVLEGYMARHPEMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL +YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

66) iucC in NC_014121


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  646 bits (2440),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/573 (66%), Positives = 470/573 (83%), Gaps = 1/573 (0%)

Query  5    WQKVNREMVAKILAELEYERTLSAEPLAADRWQITMGSETWQFRATRGIWGWLHIDPASL  64
            W+ VNR +VAK+L+E+EYE+ + AE+ + D+  I + +  W+F A RGIWGWL ID+ +L
Sbjct  6    WDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTL  65

Query  65   TTASGAAVEAESAFLQLATVLEMSDAQTAEHLEDLYATLRGDMQLLQARETLDADALIHL  124
              +  + + A++ ++QL  VL MSDA  AEH++DLYATL GD+QLL+AR  L A  LI+L
Sbjct  66   RCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  125  DPDELQCLMSGHPKFIFNKGRRGWGLEALRQYAPEYRGRFRLHWVAVQREHLVWSSDVDC  184
            D+D LQCL+SGHPKF+FNKGRRGWG EAL +YAPEY   FRLHW+AV+REH++W  D D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  185  DINTLLASTMDSAERARFDAHWQALKLDDSWLPVPLHPWQWQQKIAVHFLAQLARGEMVE  244
            DI+ LL+++MD+ E +RF   WQ   LD++WLP+P+HPWQWQQKIA +F+A++A G MV 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  245  LGEFGDEYLAQQSLRTLTNASRRAPYDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQ  304
            LGEFGD+ LAQQSLRTLTNASRR+  DIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  305  QFASDATLTRSGAQVLGEPAAGYLAHTGYAALPKAPYRYQEMLGVIWRENPSCYLQDGEQ  364
             FA+DATL +SGA +LGEPAAGY++H GYAAL++APYRYQ MLGVIWRENP   L+ +E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  365  AVLMAALMETDNAGRPLIDAWIAHSGLTAEAWLEKLFDATVIPFYHLLCRYGVALIAHGQ  424
            +VLMA+LME D+  +PL +A I +SGL AE+WL +LF   V+P+YHLLCRYGVALIAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  425  NVTLVMKDYVPQRILLKDFQGDMRLVDEDFPQAESLPQQVKAVTARLSAEYIIHDLQTGN  484
            N+TL MK+ VPQR+LLK+FQGDMRLV E FP+ +SLPQ+V+ VT+RLSA+Y+IHDLQTG+
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  485  FVTVLRFISRLTQQSGVSETRFYQILAQVLRRYMAAHPELAERFAKFDLFKPQIIRVILN  544
            FVTVLRFIS L  + GV+E RFYQ+LA VL  YM  HP++AERFA F LF+PQIIRV+LN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  545  PVKLTFSEHDGGSRMLPNYVCDLDNPLFLVSQE  577
            PVKLT ++ DGGSRMLPNY+ +L+NPL LV+QE
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

67) A3UG_14865 in NC_018079


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  645 bits (2439),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/573 (66%), Positives = 470/573 (83%), Gaps = 1/573 (0%)

Query  5    WQKVNREMVAKILAELEYERTLSAEPLAADRWQIAMGSETWQFRATRGIWGWLHIDPASL  64
            W+ VNR +VAK+L+E+EYE+ + AE+ + D+  I + +  W+F A RGIWGWL ID+ +L
Sbjct  6    WDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTL  65

Query  65   TTTSGAAVEAESAFLQLATVLEMSDAQTAEHLEDLYATLRGDMQLLQARETLDADALIHL  124
              T  + + A++ ++QL  VL MSDA  AEH++DLYATL GD+QLL+AR  L A  LI+L
Sbjct  66   RCTDEPVL-AQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINL  124

Query  125  DPDELQCLMSGHPKFIFNKGRRGWGLDALRQYAPEYRGRFRLHWVAVQREHLVWSSDVDC  184
            D+D LQCL+SGHPKF+FNKGRRGWG +AL +YAPEY   FRLHW+AV+REH++W  D D 
Sbjct  125  DADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDL  184

Query  185  DINTLLASTMDSAERARFDARWQALKLDDSWLPVPLHPWQWQQKIAVHFLAQLARGEMVE  244
            DI+ LL+++MD+ E +RF   WQ   LD++WLP+P+HPWQWQQKIA +F+A++A G MV 
Sbjct  185  DIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVS  244

Query  245  LGEFGDEYLAQQSLRTLTNASRRAPYDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQQ  304
            LGEFGD+ LAQQSLRTLTNASRR+  DIKLPLTIYNTSCYRGIPG+YIAAGPLASRWLQQ
Sbjct  245  LGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQ  304

Query  305  QFASDATLTRSGAQVLGEPAAGYLAHTGYAALPKAPYRYQEMLGVIWRENPSCYLQDGEQ  364
             FA+DATL +SGA +LGEPAAGY++H GYAAL++APYRYQ MLGVIWRENP   L+ +E 
Sbjct  305  VFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDES  364

Query  365  AVLMAALMETDNAGRPLIDAWIAHSGLTAEAWLEKLFDATVIPFYHLLCRYGVALIAHGQ  424
            +VLMA+LME D+  +PL +A I +SGL AE+WL +LF   V+P+YHLLCRYGVALIAHGQ
Sbjct  365  PVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQ  424

Query  425  NVTLVMKDYVPQRILLKDFQGDMRLVDEDFPQAESLPQQVKAVTARLSAEYIIHDLQTGN  484
            N+TL MK+ VPQR+LLK+FQGDMRLV E FP+ +SLPQ+V+ VT+RLSA+Y+IHDLQTG+
Sbjct  425  NITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGH  484

Query  485  FVTVLRFISRLTQQSGVSETRFYQILAQVLRRYMAAHPDLAERFAKFDLFKPQIIRVILN  544
            FVTVLRFIS L  + GV+E RFYQ+LA VL  YM  HP++AERFA F LF+PQIIRV+LN
Sbjct  485  FVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLN  544

Query  545  PVKLTFSEHDGGSRMLPNYVCDLDNPLFLVSQE  577
            PVKLT ++ DGGSRMLPNY+ +L+NPL LV+QE
Sbjct  545  PVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

68) SerAS12_0845 in NC_015566


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  635 bits (2400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/578 (67%), Positives = 474/578 (83%), Gaps = 1/578 (0%)

Query  5    DYANWQRVNRQMIAKILAELEYERTLCAEQH-DGQWRIALGDASYTFSAERGIWGWLHID  63
            +  +W+ VNR+++AK+L+E+EYE+ + AE + D++  I L +A   F AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   AASLACDRQPLAADQTLRQLAQVLKMDDAQIAEHLEDLYATLRGDMQLLSARHGMSaqdl  123
            A +L C  +P+ A+  L QL  VL M DA +AEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  ialdadalqcllaGHPKFIFNKGRRGWGLTALQQYAPEYQGQFCLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   F LHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  DNYPLENLLNSAMTAAERQRFDRRWRELKLNDDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  +++LL +AM + E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDSYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAEDSTLRASGAEILGEPAAGYMTHQTYAALAKAPYRYQEMLGVIWRENPSCYLRD  363
            LQQVFA D+TL  SGA ILGEPAAGY++H+ YAALA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIGAYIARSGLSAEAWLQQMFSRVVVPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL GAYI RSGL AE+WL Q+F  VVVP+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEAASLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSESRFYQLLAQVLERYMAQHPDMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL  YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

69) SerAS13_0845 in NC_017573


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  635 bits (2400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/578 (67%), Positives = 474/578 (83%), Gaps = 1/578 (0%)

Query  5    DYANWQRVNRQMIAKILAELEYERTLCAEQH-DGQWRIALGDASYTFSAERGIWGWLHID  63
            +  +W+ VNR+++AK+L+E+EYE+ + AE + D++  I L +A   F AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   AASLACDRQPLAADQTLRQLAQVLKMDDAQIAEHLEDLYATLRGDMQLLSARHGMSaqdl  123
            A +L C  +P+ A+  L QL  VL M DA +AEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  ialdadalqcllaGHPKFIFNKGRRGWGLTALQQYAPEYQGQFCLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   F LHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  DNYPLENLLNSAMTAAERQRFDRRWRELKLNDDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  +++LL +AM + E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDSYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAEDSTLRASGAEILGEPAAGYMTHQTYAALAKAPYRYQEMLGVIWRENPSCYLRD  363
            LQQVFA D+TL  SGA ILGEPAAGY++H+ YAALA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIGAYIARSGLSAEAWLQQMFSRVVVPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL GAYI RSGL AE+WL Q+F  VVVP+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEAASLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSESRFYQLLAQVLERYMAQHPDMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL  YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

70) SerAS9_0845 in NC_015567


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  635 bits (2400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/578 (67%), Positives = 474/578 (83%), Gaps = 1/578 (0%)

Query  5    DYANWQRVNRQMIAKILAELEYERTLCAEQH-DGQWRIALGDASYTFSAERGIWGWLHID  63
            +  +W+ VNR+++AK+L+E+EYE+ + AE + D++  I L +A   F AERGIWGWL ID
Sbjct  2    NHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWID  61

Query  64   AASLACDRQPLAADQTLRQLAQVLKMDDAQIAEHLEDLYATLRGDMQLLSARHGMSaqdl  123
            A +L C  +P+ A+  L QL  VL M DA +AEH++DLYATL GD+QLL AR+G+SA DL
Sbjct  62   AQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDL  121

Query  124  ialdadalqcllaGHPKFIFNKGRRGWGLTALQQYAPEYQGQFCLHWVAAKRGSFVWCAD  183
            I LDAD LQCLL+GHPKF+FNKGRRGWG  AL++YAPEY   F LHW+A KR   +W  D
Sbjct  122  INLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCD  181

Query  184  DNYPLENLLNSAMTAAERQRFDRRWRELKLNDDWIPVPLHPWQWQQKIALHFLPQLAEGE  243
            ++  +++LL +AM + E  RF + W+E  L+++W+P+P+HPWQWQQKIA +F++++AEG 
Sbjct  182  NDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGR  241

Query  244  LIELGEFGDSYLAQQSLRTLTNVSRRSAFDIKLPLTIYNTSCYRGIPGKYISAGPAASRW  303
            ++ LGEFGD  LAQQSLRTLTN SRR+++DIKLPLTIYNTSCYRGIPG+YI+AGP ASRW
Sbjct  242  MVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRW  301

Query  304  LQQVFAEDSTLRASGAEILGEPAAGYMTHQTYAALAKAPYRYQEMLGVIWRENPSCYLRD  363
            LQQVFA D+TL  SGA ILGEPAAGY++H+ YAALA+APYRYQ MLGVIWRENP   L+ 
Sbjct  302  LQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKP  361

Query  364  GEQAILMATLMETDNHGQPLIGAYIARSGLSAEAWLQQMFSRVVVPMYHLMCRYGVALIA  423
            +E ++LMATLME D++ QPL GAYI RSGL AE+WL Q+F  VVVP+YHL+CRYGVALIA
Sbjct  362  DESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIA  421

Query  424  HGQNITLVMKDHVPQRVLLKDFQGDMRLVDQDFPEAASLPKVVKDVTVRLSADYLIHDLQ  483
            HGQNITL MK+ VPQRVLLK+FQGDMRLV + FPE  SLP+ V+DVT RLSADYLIHDLQ
Sbjct  422  HGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQ  481

Query  484  TGHFVTVLRFISPLMQACGVSESRFYQLLAQVLERYMAQHPDMAERFALFDLFKPQIIRV  543
            TGHFVTVLRFISPLM   GV+E RFYQLLA VL  YM +HP+MAERFALF LF+PQIIRV
Sbjct  482  TGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRV  541

Query  544  VLNPVKLTYSEQDGGSRMLPNYLQDLDNPLYLVTKEFA  581
            VLNPVKLT ++ DGGSRMLPNYL++L+NPL LVT+E+ 
Sbjct  542  VLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQEYE  579

71) VFMJ11_A0199 in NC_011186


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  465 bits (1754),  Expect = 2e-132, Method: Compositional matrix adjust.
 Identities = 270/589 (46%), Positives = 405/589 (69%), Gaps = 23/589 (3%)

Query  7    HTHWPAANRKMVAKLISELAYEQAFKIE-QNNQGYVLRLDDGVCYQFLGKTNIWGQIVIE  65
            H +W   NR++VAK++SE+ YEQ F  E Q ++ Y + L ++   +F++   IWG + I+
Sbjct  3    HKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQ-WRFIAERGIWGWLWID  61

Query  66   PTSLIRKQKSLNSDVLATQFMMDVQRVINIGDESLAEHFEDLNATLLGDCKLAQRKMNIS  125
            + +L    +  +  VLA  ++M+++ V++++D ++AEH +DL ATLLGD +L + +  +S
Sbjct  62   AQTL----RCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLS  117

Query  126  ANELAFLSCEQQQLLFNGHPKFAFNKGRRGWGTQDLSLYAPEAERAFQLAWVAVHESILE  185
            A++L  L  ++ Q L++GHPKF FNKGRRGWG + L  YAPE   +F+L W+AV      
Sbjct  118  ASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAV------  171

Query  186  KATNSKVDWKC--------LVLSAVSNAEFHVMNSQLSSFNVDSSEYTFVPVHPWQWEQK  237
                  + W+C        L+ +A+   EF   +       +D  +   +PVHPWQW+QK
Sbjct  172  --KREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDH-NWLPLPVHPWQWQQK  228

Query  238  LSILFSREMAEKTLVYLGKFGDEFLPQLSIRTLSNVTRPESYDIKLPLTIMNTSCYRGIP  297
            ++  F  + AE  +V LG FGD+ L+Q S+RTL+N +R  + DIKLPLTI NTSCYRGIP
Sbjct  229  IATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIP  288

Query  298  GRYILAGPIASDWLDSIFKSDPLFVDKKAEVLQEPAAGFVAQADYKLLTDAPYRYHELLG  357
            GRYI AGP+AS WL+ +F +D+ +V+  A +L EPAAG+V++ +Y  L+ APYRY+ +LG
Sbjct  289  GRYIAAGPLASRWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLG  348

Query  358  VIWRESAQSKLGENESAILMAALMESDESGVPLISEYIQASGLSIEAWLDKLFDAVVIPF  417
            VIWRE++   L  +ES++LMA+LME DE+  PL + YI+ SGL  E+WL +LF  VV+P+
Sbjct  349  VIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPL  408

Query  418  YHLLCKYGVSLIAHGQNVTLVMEGGIPKRILLKDFQGDMRLVERDIPEQETLAPLVKEVT  477
            YHLLC+YGV+LIAHGQN+TL M  G+P+R+LLK+FQGDMRLV   +PE ++L+  V++VT
Sbjct  409  YHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVT  468

Query  478  VKLPEELIIHDLQTGHFVTVLRFISPLVETLGLPEIEFYKVLAQRVHTYMAMTPEYKDRF  537
             +L+ + +IHDLQTGHFVTVLRFISPL+  LG+PE  FY++LA  +  YM   P+  +RF
Sbjct  469  SRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERF  528

Query  538  ERLDLFKPRILRIGLNLAKFRHSTDSSASRMLPDMDDKVDNPLYIALNQ  586
              + LF+P+I+R+ LN  K+  +   ++SRMLP+  ++++NPL +  ++
Sbjct  529  ALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

72) iucC in NC_006841


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  464 bits (1747),  Expect = 7e-132, Method: Compositional matrix adjust.
 Identities = 271/581 (47%), Positives = 407/581 (71%), Gaps = 7/581 (1%)

Query  7    HTHWSAANRKMVAKLISELAYEQAFKIE-QNNQGYVLFLDDGVCYQFLGKTNIWGQIVIE  65
            H +W   NR++VAK++SE+ YEQ F  E Q ++ Y + L ++   +F++   IWG + I+
Sbjct  3    HKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGAQ-WRFIAERGIWGWLWID  61

Query  66   PTSLIRKQKSLNSDVLATQFMMDIQRVINISDESLAEHFEDLNATLLGDCKLAQRKTNMS  125
            + +L    +  +  VLA  ++M+++ V+++SD ++AEH +DL ATLLGD +L + +  +S
Sbjct  62   AQTL----RCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLS  117

Query  126  ANELAFLSCEQQQLLLNGHPKFAFNKGRRGWGTQDLSLYAPEAERAFQLAWVAVHESILD  185
            A++L  L  ++ Q LL+GHPKF FNKGRRGWG + L  YAPE   +F+L W+AV    + 
Sbjct  118  ASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMI  177

Query  186  KATNNKVDWKHLVLSAVSNAELHVMNSQLSSFNVDSSEYTFVPVHPWQWEQKLSILFSRE  245
               +N +D  + +L+A  +++     SQ+   N    +   +PVHPWQW+QK++  F  +
Sbjct  178  WRCDNDLD-IQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIAD  236

Query  246  MAEKTLIYLGKFGDDFLPQLSIRTLSNITRPESYDIKLPLTIMNTSCYRGIPGRYILAGP  305
             AE  ++ LG FGD+ L+Q S+RTL+N +R  + DIKLPLTI NTSCYRGIPGRYI AGP
Sbjct  237  FAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGP  296

Query  306  IASDWLDSVFKSDPLFVDKKAEVLQEPAAGFVAQADYKLLTDAPYRYHELLGVIWRESAQ  365
            +AS WL+ VF +D+ +V+  A +L EPAAG+V++ +Y  L+ APYRY+ +LGVIWRE++ 
Sbjct  297  LASRWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPC  356

Query  366  SKLGENESAILMAALMESDESGVPLISEYIQASGLSIEAWLDKLFDAVVIPFYHLLCKYG  425
              L  +ES++LMA+LME DE+  PL + YI+ SGL  E+WL +LF  VV+P+YHLLC+YG
Sbjct  357  RWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYG  416

Query  426  VSLIAHGQNVTLVMEDGAPKRILLKDFQGDMRLVERDIPEQENLDPLVKEVTVKLPEELI  485
            V+LIAHGQN+TL M +G P+R+LLK+FQGDMRLV   +PE ++L   V++VT +L+ + +
Sbjct  417  VALIAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYL  476

Query  486  IHDLQTGHFVTVLRFISPLVETLGLSEIEFYRVLAQRVRIYMAMTPEYKDRFERLDLFKP  545
            IHDLQTGHFVTVLRFISPL+  LG++E  FY++LA  +  YM   P+  +RF  + LF+P
Sbjct  477  IHDLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRP  536

Query  546  RILRIGLNLAKFRHSTDSSASRMLPDMDDKVDNPLYIALNQ  586
            +I+R+ LN  K+  +   ++SRMLP+  ++++NPL +  ++
Sbjct  537  QIIRVVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLVTQE  577

73) Swoo_2658 in NC_010506


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  386 bits (1452),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 238/573 (42%), Positives = 384/573 (68%), Gaps = 6/573 (1%)

Query  2    INSEDWQKINTSLCAKIISELHYEERLYPTDKGD--YWQLNTPHRNWEFKAKVTVWGMLE  59
            +N  DW+ +N  L AK++SE++YE+ + +  +GD  Y  +N P  +W F A   +WG L 
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHY-CINLPGAQWRFIAERGIWGWLW  59

Query  60   IEPYSMTCSDNLAPQACQLLLDTQEMLKISDINLANLLEEIQQTLYSDTVRLSKLQGVTA  119
            I++ ++ C+D+ +  A  LL++ + +L +SD  +A+ ++++  TL +D   L   +G++A
Sbjct  60   IDAQTLRCTDE-PVLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSA  118

Query  120  SDLVTMDETERQRYIDAHPKAIANKGRLGWGEASLKNYSPESGSSFQLHWLAIDKSYCKS  179
            SDL+ +D    Q  + +HPK + NKGR GWG  +L  Y+PE  ++F+LHWLA+ +     
Sbjct  119  SDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIW  178

Query  180  GISEEINYLQILNNVLGESEVRSLTSKLGEDS-DKYWL-VAVHPWQYQRFLTGQYASLFA  237
               ++++  Q+L   ++  E   ++    E++ D  WL ++VHPWQ Q+ ++ ++ + FA
Sbjct  179  RCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFA  238

Query  238  NKTIVDLGELGSAWYAQQSIRTLSSASQEVRFDAKTALSILNTSCYRGIPGKFIVQGPKL  297
            +  +V LGE+G  W AQQS+RTL++AS+   +D K +L+I NTSCYRGIPG++I  GP  
Sbjct  239  EGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLA  298

Query  298  SAWLKQLANEDSTLRACGLHVQQEIAGFYCPHPYQSQIEQGPYRYQEMLGCIWRERAEHV  357
            S WL+Q+   D+TL   G  +  E A+ Y +H   + + ++PYRYQ MLG IWRE + + 
Sbjct  299  SRWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRW  358

Query  358  LSVNQRPITMAALMQTDLHGDPLIGALIKKSTIDIEPWLEKLFFHVVIPVYHLMCQYGVG  417
            L  ++ P+ MA+LM+ D + +PL GA I +S +D E WL +LF  VV+P+YHL+C+YGV+
Sbjct  359  LKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVA  418

Query  418  LVAHGQNITLVLENHQPVGCIIKDFHGDLRIVDQDFAELDSLPAEIRDALTRLPANYLIH  477
            L+AHGQNITL + +  P   ++K+F+GD+R+V + F+E+DSLP E+RD  +RL+A+YLIH
Sbjct  419  LIAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIH  478

Query  478  DLLTGHFVTVLRFISPKIAALGLSEIQFYRLLKQVINTYQAQHPQLSDRFTQFNLLTPDI  537
            DL TGHFVTVLRFISP +  LG++E +FY+LL  V++ Y  +HPQ+++RF+ F+L+ P+I
Sbjct  479  DLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQI  538

Query  538  DKVCINRVRFKIGYGDSDERPLPEIGKPIKNPL  570
             +V +N V++     D++ R LP+    ++NPL
Sbjct  539  IRVVLNPVKLTWPDLDGGSRMLPNYLENLQNPL  571

74) GbCGDNIH1_2376 in NC_008343


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 243/565 (44%), Positives = 376/565 (67%), Gaps = 7/565 (1%)

Query  38   LAKSLSELAYEEAFHPEEEAGGLWIFRFGDVHYRCEGEPRIWGQLTIDPDSIIRIENGEE  97
            +AK LSE+ YE+ FH+E ++++   + + + + R  +E  IWG L ID++++   ++   
Sbjct  14   VAKMLSEMEYEQVFHAESQGDDHYCINLPGAQWRFIAERGIWGWLWIDAQTLRCTDEP--  71

Query  98   SqahdaaqffvdaqaaLGMSDATLAMYLQELYATLQTDMELLRRRDGLSAISMLDLDNDR  157
                 A  ++++ ++ L+MSDAT+A  +Q+LYATL  D++LL+ R GLSA  +++LD DR
Sbjct  72   ---VLAQTLLMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINLDADR  128

Query  158  LQARLDGHPKAPASKGRVGWGLEDQRAYAPEYDPVFRLHWIAVAREACLGGMTRDISEDD  217
            LQ  L GHPK   +KGR GWG E    YAPEY   FRLHW+AV RE  +     D+  ++
Sbjct  129  LQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVKREHMIWRCDNDLDIQQ  188

Query  218  LLSEMLRVDDLRQIDRILFERGFDRISHRLIPVHPWQWQNYIQTHFAADIASGRIVPLGE  277
            LL+  +  +++ ++ ++  E G+D+    L PVHPWQWQ+ I T+F AD+A GR+V+LGE
Sbjct  189  LLTAAMDPQEFTRFSQVWQENGLDHNWLPL-PVHPWQWQQKIATDFIADFAEGRMVSLGE  247

Query  278  RGDLYRPQQSLRTLANAERAAAHDIKLPVTILNTSAWRGLPGKGILTGVGLSSWLSECVA  337
             GD   +QQSLRTL+NA R ++ DIKLP+TI NTS  RG+PG+ I +G   S WL +  A
Sbjct  248  FGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFA  307

Query  338  KDAVFQTTKVLILRDMAGYAVPQTVYGKIAQAPYRFHELLGAVWRQRAEPSLAEDERAIM  397
             DA +  +  +IL + A+  V++  Y+ +A+APYR++ +LG +WR+ +   L  DE +++
Sbjct  308  TDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIWRENPCRWLKPDESPVL  367

Query  398  LGALQVCGGDGVPLISACIRRSSMPCDIWLERLFSSVVVPLYHLMCRYGAGFIAHGQNVT  457
            +++L  C+ +  PL +A I RS++  + WL +LF  VVVPLYHL+CRYG ++IAHGQN+T
Sbjct  368  MATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNIT  427

Query  458  LLLKDWVPCGVALKDLQGDFDLVTPVLPEHETLPEGLADQVGRRPAEHLIHHLQTGHFVS  517
            L +K+ VP  V LK++QGD  LV   +PE ++LP+ + D  +R +A+ LIH+LQTGHFV+
Sbjct  428  LAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVT  487

Query  518  VLRFLSDALLTHDGYPEQAFYQGLARVIRQYQARCPELAGRFEMFDLFTPTMMRICINRA  577
            VLRF+S +L+ + G PE+ FYQ LA V+ +Y  + P++A RF +F LF P ++R+ +N  
Sbjct  488  VLRFIS-PLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPV  546

Query  578  RFSIGYGDTPVRPKPEIGTPLHNPL  602
            +++    D   R  P+    L+NPL
Sbjct  547  KLTWPDLDGGSRMLPNYLENLQNPL  571

75) Oant_3255 in NC_009668


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  363 bits (1365),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 234/584 (41%), Positives = 366/584 (63%), Gaps = 12/584 (2%)

Query  20   VDDEIWGIVNRTAIAKAISELSYEEGFAPVALNKAETMWTLTLGDAVSYRFEARRRIWGQ  79
            +++  W++VNR  +AK +SE+ YE+ F + +    +    + L +A   RF A R IWG 
Sbjct  1    MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHY--CINLPGA-QWRFIAERGIWGW  57

Query  80   LHINPKSLVRATSAEEAPANDVVGFLADARDVLEISPATFCTYAKELYNTLMADARIVAR  139
            L I++++L     ++E+   + +  L + + VL +S AT     ++LY TL++D +++  
Sbjct  58   LWIDAQTL---RCTDEPVLAQTL--LMQLKPVLSMSDATVAEHMQDLYATLLGDLQLLKA  112

Query  140  RSTFNSEKLASLSDMELQTLLDGHPKAPANKGRLGWGLQDTEAYAPEFDAPIQLFWLAAA  199
            R  +++  L +L    LQ LL GHPK   NKGR GWG +  E YAPE+   ++L WLA  
Sbjct  113  RRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYTNTFRLHWLAVK  172

Query  200  RSHCQFALAQDLAESELLAECLGTGERDNLLAAMSDAGVSLDTHMLLPVHPWQWQSMIVS  259
            R H      +DL   +LL+  ++  E   +     + G+  +  + LPVHPWQWQ  I +
Sbjct  173  REHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLD-HNWLPLPVHPWQWQQKIAT  231

Query  260  LYASEIAAGRLVPLGYFGDAYIAQQSLRTLANQVRGRALHVKLPLTILNTSAWRGVPGKY  319
             + +++A GR+V+LG FGD  +AQQSLRTL+N  R  +L++KLPLTI NTS  RG+PG+Y
Sbjct  232  DFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRY  291

Query  320  MRIGPKLSHWLAETAKRDPAL--KNVRILQEVAGAFYPHPHFAALKGAPYQFCEMLGAIW  377
            +  GP  S+WL +    D++L      IL E A+++ +H  +AAL  APY++  MLG IW
Sbjct  292  IAAGPLASRWLQQVFATDATLVQSGAMILGEPAAGYVSHEGYAALARAPYRYQKMLGVIW  351

Query  378  RESPEKHLPHGWRPMMMGALAQSDNAGRPIISALIERSGLSHDQWLERLFDAVAVPLYHF  437
            RE+P + L  +  P++M++L + D+  +P+ +A I+RSGL  + WL +LF  V VPLYH+
Sbjct  352  RENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHL  411

Query  438  LCCYGVGFIAHGQNITLLLDGDIPAGVAIKDFQGDTDLIDQEFPELATLPADVKSTLKRR  497
            LC YGV++IAHGQNITL +  ++P  V +K+FQGD  L+ + FPE+ +LP +V+    R 
Sbjct  412  LCRYGVALIAHGQNITLAMKEGVPQRVLLKNFQGDMRLVKEAFPEMDSLPQEVRDVTSRL  471

Query  498  PAAHLQQHLQTGHFASVLRFLSEALVAHDSYPELSFYMHLSARLRLYQQRHPGLTERYTI  557
            +A  L ++LQTGHF +VLRF+S +L+ + + PE  FY  L+A L  Y ++HP ++ER+++
Sbjct  472  SADYLIHDLQTGHFVTVLRFIS-PLMVRLGVPERRFYQLLAAVLSDYMNKHPQMAERFAL  530

Query  558  FDLFLPKIPRIAINRVRLAIGYGDANERPVPALGTELNNPLYLA  601
            F LF P+I R+ +N V+L+    D+  R +P    +L+NPL L 
Sbjct  531  FSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLENLQNPLWLV  574

76) M446_5060 in NC_010511


> AF335540|9|G5|14626626|AAK71633.1|Shigella_boydii_0-1392|+|9037..10779|iucC|-|IucC
Length=580

 Score =  327 bits (1225),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 228/542 (43%), Positives = 352/542 (65%), Gaps = 15/542 (2%)

Query  66   LRLPGGVAYRFTAARRIWGNLAIDPESLLREEGGRPVPAGDAPGFLVDAREPLGIAPDTL  125
            + LPG+   RF A R IWG L ID+++L   +   PV A     +L++ +  L+++  T+
Sbjct  39   INLPGA-QWRFIAERGIWGWLWIDAQTLRCTDE--PVLA---QTLLMQLKPVLSMSDATV  92

Query  126  CTYVQELYSTLaadariaaa----gegadllalPERMVQQVLDGHPKAPASKGRIGWGLA  181
               +Q+LY+TL +D ++  A    + +  +   ++R+ Q +L GHPK   +KGR GWG  
Sbjct  93   AEHMQDLYATLLGDLQLLKARRGLSASDLINLDADRL-QCLLSGHPKFVFNKGRRGWGKE  151

Query  182  DFEAYAPEFRAGVRLVWAAADRAACRLTLEPGldeaalvadaldpaERARLAQACRTRGL  241
             +E YAPE+    RL W A  R       + +LD   L++ A+DP E +R++Q  +  GL
Sbjct  152  ALERYAPEYTNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGL  211

Query  242  GLDRFLLLPIHPWQWDRVIAFQFAGEIAAGRLVPLGVFGSPFLPQQSLRTLAGSDPAARL  301
            + ++ L LP+HPWQW++ IA +F +++A GR+V+LG FG   L+QQSLRTL+ +   + L
Sbjct  212  DHNW-LPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGL  270

Query  302  DVKLALTVLNTSAWRGVPGKYMAIGPALSGWLAERAARDPAL--AGTIVLRERAGAFYPH  359
            D+KL+LT+ NTS  RG+PG+Y+A GP  S WL +  A D++L  +G+++L E A+++ +H
Sbjct  271  DIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAMILGEPAAGYVSH  330

Query  360  PVHERVADAPYQHREMLGAIWRDAVAARLGAGEQALMMGALTKRGADGRPLVSALVARSG  419
                 +A APY+ + MLG IWR+    +L ++E +++M++L   + + +PL +A + RSG
Sbjct  331  EGYAALARAPYRYQKMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSG  390

Query  420  LGAEAWLEHLFARVAVPLYHFLCRYGVGFVAHGQNVTLVLRDAVPCGVALKDFQGDCDLV  479
            L+AE+WL +LF  V VPLYH+LCRYGV+++AHGQN+TL ++++VP  V LK+FQGD  LV
Sbjct  391  LDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKNFQGDMRLV  450

Query  480  DQDFPEAGDLPEGVRETLLRRPAAHLLQHLQTGHFASVLRFVSDALAQHDGLPEIRFYAA  539
             + FPE + LP+ VR+   R +A  L+++LQTGHF +VLRF+S +L  + G+PE RFY  
Sbjct  451  KEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFIS-PLMVRLGVPERRFYQL  509

Query  540  LARVLRRYQAAHPDLAGRFALFDLFAPTVPRVCINRVRLALGYGASSQRPVPRTGSPLLN  599
            LA VL  Y   HP++A RFALF LF P + RV +N V+L+     ++ R +P     L N
Sbjct  510  LAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLENLQN  569

Query  600  PL  601
            PL
Sbjct  570  PL  571