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Homologs of unnamed gene of AF200692

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SFxv_3254
( YP_005728592.1 )

putative transposase

NC_017328
(Shigella flexneri 2002017)

2e-133

2) SF2972
( NP_708746.1 )

hypothetical protein

NC_004337
(Shigella flexneri 301)

2e-133

3) EC55989_4678
( YP_002405544.1 )

transposase (fragment)

NC_011748
(Escherichia coli 55989)

4e-122

4) SbBS512_E4656
( YP_001882819.1 )

hypothetical protein

NC_010658
(Shigella boydii CDC 3083-94)

3e-120

5) XNC1_2940
( YP_003713121.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-112

6) SBO_4155
( YP_410410.1 )

protein in IS element

NC_007613
(Shigella boydii Sb227)

1e-110

7) c3563
( NP_755438.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

3e-102

8) O3M_26227
( YP_006772803.1 )

protein encoded within IS

NC_018654
(Escherichia coli 2009EL-2050)

7e-102

9) S4440
( NP_839580.1 )

ISSfl3 orfD

NC_004741
(Shigella flexneri 2457T)

2e-98

10) SFxv_5051
( YP_005712100.1 )

ISSfl4 ORF3

NC_017319
(Shigella flexneri 2002017)

3e-98

11) S0379
( NP_836101.1 )

ISSfl3 orfD

NC_004741
(Shigella flexneri 2457T)

2e-97

12) UMNK88_pHly61
( YP_006137096.1 )

putative transposase

NC_017643
(Escherichia coli UMNK88)

2e-87

13) SFxv_0416
( YP_005726045.1 )

ISSfl3 orfC,D

NC_017328
(Shigella flexneri 2002017)

1e-84

14) SF0374
( NP_706323.1 )

ISSfl4 ORF3

NC_004337
(Shigella flexneri 301)

1e-84

15) SF3740
( NP_709478.1 )

ISSfl4 ORF3

NC_004337
(Shigella flexneri 301)

1e-84

16) SFV_0404
( YP_687978.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

1e-84

17) SFV_3791
( YP_691109.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

1e-84

18) UMNK88_pK8833
( YP_006131694.1 )

truncated transposase

NC_017639
(Escherichia coli UMNK88)

2e-83

19) ECO103_4908
( YP_003224727.1 )

hypothetical protein

NC_013353
(Escherichia coli 12009)

7e-83

20) ECSE_P3-0042
( YP_002295996.1 )

truncated transposase

NC_011416
(Escherichia coli SE11)

2e-82

21) UMNK88_pK8823
( YP_006131684.1 )

hypothetical protein

NC_017639
(Escherichia coli UMNK88)

3e-82

22) SBO_1920
( YP_408341.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

6e-80

23) SBO_0644
( YP_407152.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

24) SBO_1637
( YP_408075.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

25) SBO_2076
( YP_408483.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

26) SBO_3243
( YP_409567.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

27) SBO_4342
( YP_410586.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

28) SBO_4398
( YP_410640.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

1e-79

29) Bpet1145
( YP_001629749.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

2e-68

30) Pden_4540
( YP_918299.1 )

transposase IS66

NC_008688
(Paracoccus denitrificans PD1222)

5e-63

31) AZL_027850
( YP_003449967.1 )

transposase

NC_013854
(Azospirillum sp. B510)

2e-62

32) AZL_c03980
( YP_003452235.1 )

transposase

NC_013857
(Azospirillum sp. B510)

9e-59

33) c0259
( NP_752205.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

5e-56

34) i14_0240
( YP_006152380.1 )

hypothetical protein

NC_017652
(Escherichia coli clone D i14)

5e-56

35) i02_0240
( YP_006147461.1 )

hypothetical protein

NC_017651
(Escherichia coli clone D i2)

5e-56

36) ECABU_c02340
( YP_006104374.1 )

putative transposase

NC_017631
(Escherichia coli ABU 83972)

2e-49

37) DSC_14545
( YP_004931594.1 )

transposase IS66

NC_016147
(Pseudoxanthomonas spadix BD-a59)

9e-44

38) AZL_004640
( YP_003447646.1 )

transposase

NC_013854
(Azospirillum sp. B510)

8e-43

39) AZL_b01290
( YP_003451336.1 )

transposase

NC_013856
(Azospirillum sp. B510)

8e-43

40) AZL_b06050
( YP_003451812.1 )

transposase

NC_013856
(Azospirillum sp. B510)

8e-43

41) AZL_c03960
( YP_003452233.1 )

transposase

NC_013857
(Azospirillum sp. B510)

8e-43

42) AZL_c04000
( YP_003452237.1 )

transposase

NC_013857
(Azospirillum sp. B510)

8e-43

43) AZL_b01900
( YP_003451397.1 )

transposase

NC_013856
(Azospirillum sp. B510)

8e-43

44) AZL_f01480
( YP_003453452.1 )

transposase

NC_013860
(Azospirillum sp. B510)

8e-43

45) PA14_51550
( YP_792287.1 )

transposase

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

6e-39

46) tnp20
( YP_158098.1 )

transposase, fragment

NC_006513
(Aromatoleum aromaticum EbN1)

6e-38

47) ACMV_20370
( YP_004284266.1 )

putative transposase

NC_015186
(Acidiphilium multivorum AIU301)

2e-35

48) PAU_03326
( YP_003042156.1 )

Transposase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-31

• Sequence Alignments

1) SFxv_3254 in NC_017328


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  468 bits (1763),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 303/304 (99%), Positives = 304/304 (100%), Gaps = 0/304 (0%)

Query  1    MELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  60
            +ELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV
Sbjct  7    VELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  66

Query  61   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  120
            YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA
Sbjct  67   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  126

Query  121  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSaeqrlaarkaraaPLMQ  180
            ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ
Sbjct  127  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ  186

Query  181  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  240
            SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR
Sbjct  187  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  246

Query  241  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  300
            KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA
Sbjct  247  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  306

Query  301  LPAE  304
            LPAE
Sbjct  307  LPAE  310

2) SF2972 in NC_004337


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  468 bits (1763),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 303/304 (99%), Positives = 304/304 (100%), Gaps = 0/304 (0%)

Query  1    MELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  60
            +ELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV
Sbjct  7    VELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  66

Query  61   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  120
            YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA
Sbjct  67   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  126

Query  121  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSaeqrlaarkaraaPLMQ  180
            ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ
Sbjct  127  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ  186

Query  181  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  240
            SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR
Sbjct  187  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  246

Query  241  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  300
            KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA
Sbjct  247  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  306

Query  301  LPAE  304
            LPAE
Sbjct  307  LPAE  310

3) EC55989_4678 in NC_011748


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  430 bits (1619),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 273/304 (90%), Positives = 290/304 (96%), Gaps = 0/304 (0%)

Query  1    MELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  60
            +ELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV
Sbjct  7    VELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  66

Query  61   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  120
            YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA
Sbjct  67   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  126

Query  121  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSaeqrlaarkaraaPLMQ  180
            ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ
Sbjct  127  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ  186

Query  181  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRGVAVGR  240
            SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR+V++GR
Sbjct  187  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  246

Query  241  KNWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPANRVRDLLPWKVD  300
            KN LF GSD GGE++ +LYSLIGTC+LN+V+PE  LR V+  + DWP NRV +LLPW++ 
Sbjct  247  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  306

Query  301  LTSQ  304
            L ++
Sbjct  307  LPAE  310

4) SbBS512_E4656 in NC_010658


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  424 bits (1595),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 272/297 (92%), Positives = 285/297 (96%), Gaps = 0/297 (0%)

Query  1    MELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  60
            +ELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV
Sbjct  7    VELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWV  66

Query  61   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  120
            YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA
Sbjct  67   YVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEA  126

Query  121  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSaeqrlaarkaraaPLMQ  180
            ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ
Sbjct  127  ACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQ  186

Query  181  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRGVAVGR  240
            SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR+V++GR
Sbjct  187  SLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGR  246

Query  241  KNWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPANRVRDLLPW  297
            KN LF GSD GGE++ +LYSLIGTC+LN+V+PE  LR V+  + DWP NRV +LLPW
Sbjct  247  KNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

5) XNC1_2940 in NC_014228


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  397 bits (1493),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 240/309 (78%), Positives = 275/309 (89%), Gaps = 0/309 (0%)

Query  9    IYNRQGVALSRATLGRWSGAVSELLELLYDVLRQYVLMPGKVHGDDIPVPVQAPGNGKTR  68
            +Y RQGV LSRATLGRW+GAV+ELLE LYDVLRQYVLMPGKVH+DDIPVPVQ PG+GKTR
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  69   TGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGVHPQQHLAGYSGVLQADAYGGYRALYET  128
            T+RLWVYVRDDRNAGS MPPAVWFAYS+DRKG+HPQ+HLAGYSGVLQADAYGGYRALYE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  129  GNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAIEAEIRGSPAEERLALRKAR  188
            G ITEAACMAHARRKIHDVH R PT ITTEA +RIGELY+IEAE+RG +AE+RLA RKAR
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  189  SAPLMQLLFDGIQQQRATLSRHSEIAKAFAYMLKLWDSLNEYCRNGWMEIDNNIAENALR  248
            +APLMQ L+D IQQQ  TLSRHS+ AKAFAY+LK W +LN YC NGW+EIDNNIAENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  249  CVAVGRKNGLFAGSDSGGERAAILYSLIGSCRLNGVEPEAWLRYTISHIADWPSNKVHEL  308
             V++GRKN LF GSD GGER+A+LYSLIG+C+LN+V+PE+ LR  ++ IADWP N+V EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  309  LPWKLNLTN  317
            LPW++ L  
Sbjct  301  LPWRIALPA  309

6) SBO_4155 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  392 bits (1474),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 258/296 (88%), Positives = 273/296 (93%), Gaps = 6/296 (2%)

Query  6    EFTDKTLSRKPGAVQ------YDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVY  59
            E++  TL+R  GAV       YDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVY
Sbjct  8    ELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVY  67

Query  60   VRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAA  119
            VRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAA
Sbjct  68   VRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAA  127

Query  120  CMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSaeqrlaarkaraaPLMQS  179
            CMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQS
Sbjct  128  CMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQS  187

Query  180  LYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRGVAVGRK  239
            LYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR+V++GRK
Sbjct  188  LYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRK  247

Query  240  NWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPANRVRDLLPW  295
            N LF GSD GGE++ +LYSLIGTC+LN+V+PE  LR V+  + DWP NRV +LLPW
Sbjct  248  NFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

7) c3563 in NC_004431


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  364 bits (1369),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 221/310 (72%), Positives = 263/310 (85%), Gaps = 0/310 (0%)

Query  63   IYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLTDGKLHADDTPVPVLLPGNKKTK  122
            +Y RQGVELSR+ L+ W +A    L PL + L+ YVL  GK+HADD PVPV  PG+ KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  123  TGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELYRD  182
            T+RLW YVRDDRNAGS ++PAVWFAYSPDRKGIHPQ HLAG+SGVLQADAY+G+  LY  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  183  GRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLK  242
            GRITEAAC AHARRKIHDVH R P+ +T EAL+RIGELY+IEAE+RG +AEQRLA R+ +
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  243  TKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALR  302
            + PL++SL  +++++MKTLSRHS+ AKAFAY L+QW AL  Y  +GW E DNNIAENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  303  MVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGEL  362
             VSLGRKN+LFFGSDHGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  363  LPWRVALPTE  372
            LPWR+ALP+E
Sbjct  301  LPWRIALPAE  310

8) O3M_26227 in NC_018654


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  363 bits (1365),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 221/310 (72%), Positives = 262/310 (85%), Gaps = 0/310 (0%)

Query  120  IYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVLTDGKLHVDDTPVPVLLPGNKKTK  179
            +Y RQGVELSR+ L+ W +A   LL PL + L+ YVL  GK+H DD PVPV  PG+ KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  180  TGRLWAYVRDDCNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELYRD  239
            T+RLW YVRDD NAGS ++PAVWFAYSPDRKGIHPQ HLAG+SGVLQADAY+G+  LY  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  240  GRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLK  299
            GRITEAAC AHARRKIHDVH R P+ +T EAL+RIGELY+IEAE+RG +AEQRLA R+ +
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  300  TKPLLKSLESWLREKMKTLSRHSELAKAFAYALKQWPALTYYADDGWAEADNNIAENALR  359
            + PL++SL  +++++MKTLSRHS+ AKAFAY LKQW AL  Y  +GW E DNNIAENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  360  MVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGEL  419
             VSLGRKN+LFFGSDHGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  420  LPWRVALPTE  429
            LPWR+ALP+E
Sbjct  301  LPWRIALPAE  310

9) S4440 in NC_004741


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  351 bits (1320),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 201/306 (66%), Positives = 255/306 (84%), Gaps = 0/306 (0%)

Query  12   IYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTK  71
            +Y RQGVELSR T+ RW + +A+ L PLY  L +YVL +GKVHADD PV V  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  72   TGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYET  131
            T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA Y GVLQADAY+GY  LYE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  132  GRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKAR  191
            GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY IEAE+RG +AE+RLA RKAR
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  192  SVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALR  251
            +  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN +C +GWVEIDNNI+ENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  252  SVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHKL  311
            +V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V  L
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  312  LPWNFS  317
            LPW ++
Sbjct  301  LPWRIA  306

10) SFxv_5051 in NC_017319


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  351 bits (1319),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 201/306 (66%), Positives = 255/306 (84%), Gaps = 0/306 (0%)

Query  55   IYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTK  114
            +Y RQGVELSR T+ RW + +A+ L PLY  L +YVL +GKVHADD PV V  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  115  TGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYET  174
            T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA Y GVLQADAY+GY  LYE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  175  GRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKAR  234
            GR+ EA+C+AHARRK HD + R PT++T EAL+RI+ELY IEAE+RG +AE+RLA RKAR
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  235  SVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALR  294
            +  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN +C +GWVEIDNNI+ENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  295  SVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHEL  354
            +V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  355  LPWNFS  360
            LPW ++
Sbjct  301  LPWRIA  306

11) S0379 in NC_004741


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  348 bits (1308),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 201/306 (66%), Positives = 256/306 (84%), Gaps = 0/306 (0%)

Query  41   IYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTK  100
            +Y RQGVELSR T+ RW + +A+ L PLY  L +YVL +GKVHADD PV V  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  101  TGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYET  160
            T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA Y GVLQADAY+GY  LYE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  161  GRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKAR  220
            GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY IEAE+RG +AE+RLA RKAR
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  221  SVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALR  280
            +  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN +C +G+VEIDNNI+ENALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  281  SVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHEL  340
            +V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  341  LPWNFS  346
            LPW ++
Sbjct  301  LPWRIA  306

12) UMNK88_pHly61 in NC_017643


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  314 bits (1176),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 197/233 (85%), Positives = 217/233 (94%), Gaps = 0/233 (0%)

Query  1    MPPAVWFAYSPDRKGVHPQNHLAGYSGVLQADAYGGYRVLYESGRITEAACMAHARRKIH  60
            MPPAVWFAYSPDRKG+HPQNHLAGYSGVLQADAYGGYR LYESGRITEAACMAHARRKIH
Sbjct  78   MPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAHARRKIH  137

Query  61   DVHARVPTDITTEALQRIGELYAIEAEVRGCTaeqrlaarkaraaPLMQSLYDWIQTQMK  120
            DVHARVPTDITTEALQRIGELY+IEAEVRGC+AEQRLAARKARAAPLMQSLYD+IQ QMK
Sbjct  138  DVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMK  197

Query  121  TLSRHSDTAKAFAYLLKQWDGLNVYCSNGWVEIDNNIAENALRGVAVGRKNWLFAGSDSG  180
            TLSRHSDTAKAFAYLLKQW +LNVYCSNGWVEIDNNIAENALR+V++GRKN LF GSD G
Sbjct  198  TLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHG  257

Query  181  GEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLTSQ  233
            GE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L ++
Sbjct  258  GERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  310

13) BUPH_08144 in NC_018695


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  308 bits (1153),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 175/306 (58%), Positives = 244/306 (80%), Gaps = 0/306 (0%)

Query  88   MYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVMLATKLHADDTPVPVLAPGNGKTK  147
            MY R+GVEL R+ L++W G  A LL+PL + LR+ V+++ K+HADD PVPV  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  148  TGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQHLGSFNGTLQADAYGGYQAIYET  207
            T+RLWVYVRDDR ++   PPAVWFAY+PDRK+IHPQ+HL++++G LQADAYGGY+A+YE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  208  GRVTEAACWAHARRQFYELHAARPNALNTEALERIGALYRIEETIRGKPPDQRSAHRQAH  267
            GR+TEAAC AHARR++ ++HA  P  + TEAL+RIG LY IE  +RG +++QR A R+A+
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  268  ARPLLDQFHAWLTTTLETLSRKSDTSRAILYALNRWEALTRYCGDGQLEIDNLPVERALR  327
            A PL++ +  ++   + TLSR SDT++A+ Y L++W AL  YC++G +EIDN   E ALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  328  GVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGIDPEAYLRYVLARIADHAINRIDEL  387
            +V++GR+N+LF G+D GGER+A +YSLIGT KLN++DPE+YLR VL+ IAD ++NR+ EL
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  388  APWVVA  393
             PW +A
Sbjct  301  LPWRIA  306

14) SFxv_0416 in NC_017328


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  305 bits (1142),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 177/265 (67%), Positives = 226/265 (86%), Gaps = 0/265 (0%)

Query  1    MHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAK  60
            +HADD PV V  PG+GKT+T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA 
Sbjct  42   VHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAG  101

Query  61   YQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDI  120
            Y GVLQADAY+GY  LYE+GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY I
Sbjct  102  YSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTI  161

Query  121  EAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNE  180
            EAE+RG +AE+RLA RKAR+  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN 
Sbjct  162  EAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV  221

Query  181  FCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDW  240
            +C +G+VEIDNNI+ENALR+V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  
Sbjct  222  YCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESY  281

Query  241  LREVIEKLNDWPSNQVHELLPWNFS  265
            LR+V+  + DWP N+V ELLPW ++
Sbjct  282  LRHVLGVIADWPVNRVSELLPWRIA  306

15) SF0374 in NC_004337


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  305 bits (1142),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 177/265 (67%), Positives = 226/265 (86%), Gaps = 0/265 (0%)

Query  1    MHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAK  60
            +HADD PV V  PG+GKT+T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA 
Sbjct  42   VHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAG  101

Query  61   YQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDI  120
            Y GVLQADAY+GY  LYE+GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY I
Sbjct  102  YSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTI  161

Query  121  EAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNE  180
            EAE+RG +AE+RLA RKAR+  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN 
Sbjct  162  EAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV  221

Query  181  FCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDW  240
            +C +G+VEIDNNI+ENALR+V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  
Sbjct  222  YCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESY  281

Query  241  LREVIEKLNDWPSNQVHELLPWNFS  265
            LR+V+  + DWP N+V ELLPW ++
Sbjct  282  LRHVLGVIADWPVNRVSELLPWRIA  306

16) SF3740 in NC_004337


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  305 bits (1142),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 177/265 (67%), Positives = 226/265 (86%), Gaps = 0/265 (0%)

Query  1    MHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAK  60
            +HADD PV V  PG+GKT+T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA 
Sbjct  42   VHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAG  101

Query  61   YQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDI  120
            Y GVLQADAY+GY  LYE+GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY I
Sbjct  102  YSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTI  161

Query  121  EAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNE  180
            EAE+RG +AE+RLA RKAR+  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN 
Sbjct  162  EAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV  221

Query  181  FCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDW  240
            +C +G+VEIDNNI+ENALR+V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  
Sbjct  222  YCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESY  281

Query  241  LREVIEKLNDWPSNQVHELLPWNFS  265
            LR+V+  + DWP N+V ELLPW ++
Sbjct  282  LRHVLGVIADWPVNRVSELLPWRIA  306

17) SFV_0404 in NC_008258


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  305 bits (1142),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 177/265 (67%), Positives = 226/265 (86%), Gaps = 0/265 (0%)

Query  1    MHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAK  60
            +HADD PV V  PG+GKT+T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA 
Sbjct  42   VHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAG  101

Query  61   YQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDI  120
            Y GVLQADAY+GY  LYE+GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY I
Sbjct  102  YSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTI  161

Query  121  EAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNE  180
            EAE+RG +AE+RLA RKAR+  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN 
Sbjct  162  EAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV  221

Query  181  FCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDW  240
            +C +G+VEIDNNI+ENALR+V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  
Sbjct  222  YCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESY  281

Query  241  LREVIEKLNDWPSNQVHELLPWNFS  265
            LR+V+  + DWP N+V ELLPW ++
Sbjct  282  LRHVLGVIADWPVNRVSELLPWRIA  306

18) SFV_3791 in NC_008258


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  305 bits (1142),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 177/265 (67%), Positives = 226/265 (86%), Gaps = 0/265 (0%)

Query  1    MHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAK  60
            +HADD PV V  PG+GKT+T+RLWVYVRDDRNAGS +P+AVWFAYS+DRKG HPQ HLA 
Sbjct  42   VHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAG  101

Query  61   YQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDI  120
            Y GVLQADAY+GY  LYE+GR+ EA+C+AHARRKIHD + R PT++T EAL+RI+ELY I
Sbjct  102  YSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTI  161

Query  121  EAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNE  180
            EAE+RG +AE+RLA RKAR+  LMQSLYD+IQ Q KTLS+H++ AKAF Y+L++W+ALN 
Sbjct  162  EAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV  221

Query  181  FCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDW  240
            +C +G+VEIDNNI+ENALR+V++GRKN+LFFGSD GGE +A++YSL+ TCK N+V+PE  
Sbjct  222  YCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESY  281

Query  241  LREVIEKLNDWPSNQVHELLPWNFS  265
            LR+V+  + DWP N+V ELLPW ++
Sbjct  282  LRHVLGVIADWPVNRVSELLPWRIA  306

19) UMNK88_pK8833 in NC_017639


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  302 bits (1131),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 173/314 (56%), Positives = 235/314 (75%), Gaps = 4/314 (1%)

Query  63   IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTRKVHTDDTPVKVLAPGRKKAK  122
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  123  TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHFRPFRGILQADAFNGYDRLFSA  182
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++H+  + G+LQADA+ GY  L+ +
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  183  GREGGALTEAGCWAHARRKIHDVYISTKSATAEEALKLIGELYAIEHDIRGLPVSEHLAV  242
            GR    +TEA+C AHARRKIHDV     +  + EAL+ IGELY+IE ++RG +  ++LA 
Sbjct  121  GR----ITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  243  RQMQSRPLLTSLYKLMQEKEHTLSKKCRLGDAFRYIRKHWAALCNFCDDGLAEVDNNAAE  302
            R+ ++ PL+ SLY  +Q++  TLS+    + AF Y+ K+W AL  +C +G  E+DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  303  RALRAVCLGKKNYVFFDSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILGVLPEWPSNR  362
             ALRAV LG+KN++FF+SDHGGERGALLY+LIGTC+LN++DPE+YLRH+LGV+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  363  VDELLPWNVALTNK  376
            V ELLPW +AL   
Sbjct  297  VSELLPWRIALPAE  310

20) ECO103_4908 in NC_013353


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  300 bits (1125),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 176/313 (57%), Positives = 236/313 (76%), Gaps = 4/313 (1%)

Query  111  IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTK  170
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  171  TGRIWTYVRDDRNAGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSA  230
            T+R+W YVRDDRNAGS  PPAVWFAYSP+R+G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  231  EREGGALTEVACWAHARRKIHDVYISSKSATAEEALKRISELYAIEDEIRGLPESERLAV  290
              E+G +TE AC AHARRKIHDV     +  + EAL+RI+ELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  291  RQQRSKALLTSLHEWMMEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAETDNNTAE  350
            R+ R+ +L+ SL +++ ++  TLS+ S  + AF+Y+L+QW AL  Y  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  351  RALRAVCLGKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNR  410
             ALRAV LG+KN++FFGSDHGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  411  VDELLPWNVVLTN  423
            V ELLPW + L  
Sbjct  297  VSELLPWRIALPA  309

21) BUPH_06793 in NC_018695


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  299 bits (1121),  Expect = 9e-83, Method: Compositional matrix adjust.
 Identities = 171/306 (56%), Positives = 239/306 (79%), Gaps = 0/306 (0%)

Query  9    MYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVMLATKLHADDTPVPVLAPGNGKTK  68
            MY R+GVEL R+ L++W G  A LL+PL + LR+ V+++ K+HADD PVPV  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  69   TGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQHLGSFNGTLQADAYGGYQAIYET  128
            T+RLWVYVRDDR ++   PPAVWFAY+PDRK+IHPQ+HL++++G LQADAYGGY+A+YE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  129  GRVTEAACWAHARRQFYELHAARPNALNTEALERIGALYRIEETIRGKPPDQRSAHRQAH  188
            GR+TEAAC AHARR++ ++HA  P  + TEAL+RIG LY IE  +RG +++QR A R+A+
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  189  ARPLLDQFHAWLTTTLETLSRKSDTSRAILYALNRWEALTRYCGDGQLEIDNLPVERALR  248
            A PL++ +  ++   + TLSR SDT++A+ Y L++W AL  YC++G +EIDN   E ALR
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  249  GVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGIDPEAYLRYVLARIATMRSIASTNL  308
            +V++GR+N+LF G+D GGER+A +YSLIGT KLN++DPE+YLR VL+ IA       ++L
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  309  SPWVVA  314
             PW +A
Sbjct  301  LPWRIA  306

22) ECSE_P3-0042 in NC_011416


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  298 bits (1118),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 174/314 (56%), Positives = 235/314 (75%), Gaps = 4/314 (1%)

Query  24   IYARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTFKLHTDDTPVKVLAPGRKKAK  83
            +Y RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  84   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFNGYDRLFSA  143
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  144  EREGGALTEAGCWAHARRKIHDVYISTKSATAEEALKLIGELYAIEHDIRGLPVSERLAV  203
              E+G +TEA+C AHARRKIHDV     +  + EAL+ IGELY+IE ++RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  204  RQMQSRPLLTSMYKLMQEKEHTLSKKCRLGDAFRYIRKHWAALCNFCDDGLAEVDNNAAE  263
            R+ ++ PL+ S+Y  +Q++  TLS+    + AF Y+ K+W AL  +C +G  E+DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  264  RALRAVCLGKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNR  323
             ALRAV LG+KN++FFGSDHGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  324  VDELLPWNVALTNK  337
            V ELLPW +AL   
Sbjct  297  VSELLPWRIALPAE  310

23) UMNK88_pK8823 in NC_017639


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  298 bits (1115),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 173/314 (56%), Positives = 235/314 (75%), Gaps = 4/314 (1%)

Query  24   IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTFKLHTDDTPVKVLAPGRKKAK  83
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  84   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFNGYDRLFSA  143
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  144  EREGGALTEAGCWAHARRKIHDVYISTKSATAEEALKLIGELYAIEHDIRGLPVSERLAV  203
              E+G +TEA+C AHARRKIHDV     +  + EAL+ IGELY+IE ++RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  204  RQMQSRPLLTSMYKLMQEKEHTLSKKCRLGDAFRYIRKHWAALCNFCDDGLAEVDNNAAE  263
            R+ ++ PL+ S+Y  +Q++  TLS+    + AF Y+ K+W AL  +C +G  E+DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  264  RALRAVCLGKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNR  323
             ALRAV LG+KN++FFGSDHGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  324  VDELLPWNVALTNK  337
            V ELLPW +AL   
Sbjct  297  VSELLPWRIALPAE  310

24) Bxe_C0805 in NC_007953


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  297 bits (1111),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 178/303 (59%), Positives = 229/303 (76%), Gaps = 0/303 (0%)

Query  63   RDGVKLDPASMGRWVGQCEALCEPLTEALRIYTMASFKLHADDTPIPVLAPGNRKTRTGR  122
            R+GV L  A++GRW G    L EPL + LR Y + + K+HADD P+PV  PG+ KTRT+R
Sbjct  4    RQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTAR  63

Query  123  LWVYVRDDTRSGSTEPAAVWFAYSPDRKGIHPQTHLAGFKGILQADAYGGFNELYAGGKI  182
            LWVYVRDD  +GS  P+AVWFAYSPDRKGIHPQ HLAG+ G+LQADAYGG+  LY +G+I
Sbjct  64   LWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRI  123

Query  183  REAACWDHARRYIYDVHVRTPTDATRHVLELIGELYGIEADIRGKPAVERLHVRQQRSVA  242
             EAAC  HARR I DVH R PTD T + L+ IGELY IEA++RG +A +RL  R+ R+ +
Sbjct  124  TEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAP  183

Query  243  VLAAIKAWMADKIATLSTKSELAKAIRYSLNQWDALVLYCEDGRVEISNALAENALRCVS  302
            ++ ++  ++ +++ TLS  S+ AKA+ Y L+QW AL +YC +G+VEI N +AENALR VS
Sbjct  184  LMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVS  243

Query  303  LGRKNFLFAGSDSGGERAAAMYGLIGTCKLNDINPRAYLEYVLTHIADHKINRIDELLPW  362
            LGRKNFLF GSD GGER+A +Y+LIGTCKLND++P +YL  VL  IAD  +NR+ ELLPW
Sbjct  244  LGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

Query  363  NVA  365
             +A
Sbjct  304  RIA  306

25) SBO_1920 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  291 bits (1088),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  111  IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  170
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  171  TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  230
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  231  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  290
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  291  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  350
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  351  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  410
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  411  VDELLPWNVALTN  423
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

26) SBO_0644 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

27) SBO_1637 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

28) SBO_2076 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

29) SBO_3243 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

30) SBO_4342 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

31) SBO_4398 in NC_007613


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  289 bits (1081),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/313 (56%), Positives = 232/313 (75%), Gaps = 4/313 (1%)

Query  18   IFARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK  77
            ++ RQGVELSRA L+   +A  +L+ PL D L +YV+ + KVH+DD PV V  PG  K++
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSA  137
            T+ +W YVRDDRNAGS  PPAVWFAYSPD++G HP++HL+ + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAV  197
              E+G +TEA+C AHARRK+HDV     +  + EAL+ IGELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAE  257
            R+ ++ PL+ SLY  +Q++  TLS+      AF Y+ K+W AL  +  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNR  317
             ALRAV LG+KNF+FFGSDHGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NR
Sbjct  237  NALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  296

Query  318  VDELLPWNVALTN  330
            V ELLPW +AL  
Sbjct  297  VSELLPWRIALPA  309

32) Bpet1145 in NC_010170


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  251 bits (937),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 145/257 (57%), Positives = 202/257 (79%), Gaps = 0/257 (0%)

Query  2    PGKGKTQQGRLWTYVRDDRPHGGSAAPAAWFRYSPDRKGIHPQTHLKDFSGVLQADAFAG  61
            PG GKT+ +RLW YVRDDR  G+  +PA WF YSPDRKGIHPQ HL ++SGVLQADA++G
Sbjct  54   PGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGG  113

Query  62   YNEVYASGRVVEAACWAHARRKVYDIHVSRPTPLSTHFLEQVALLYEIEANIRGKPPDVR  121
            Y  +Y SGR+ EAAC AHARRK+ D+H   PT ++T+ L++++ LY IEA++RG +++ R
Sbjct  114  YRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQR  173

Query  122  HDARQETAKPIVTALHAWLMEQLPALSRKSPTADAIRYALNQWQALTRYLDDGEVEIDNN  181
              AR+  A P++ +L  ++ +Q+ +LSR S TA A+ Y L+QW+AL  Y  +G VEIDNN
Sbjct  174  LAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNN  233

Query  182  AAERSLRGVAVGRKNYLFMGSDRGGERAATMYSLMETAKLNSVNPEAYLRHVLSVIADYP  241
             AE +LR+V++GRKN+LF GSD+GGER+A +YSL+ T KLN V+PE+YLRHVL+VIAD P
Sbjct  234  IAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWP  293

Query  242  VNQVADLLPWHVDLASN  258
            VN+V++LLPW++ L+++
Sbjct  294  VNRVSELLPWRIALPAE  310

33) Pden_4540 in NC_008688


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  234 bits (872),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 137/304 (46%), Positives = 214/304 (71%), Gaps = 0/304 (0%)

Query  31   IFDREGLDLDRSTLADWVGKSTALLEPLAEAIGRHVLSAEAIFADDTPVSMLAPGTGKTQ  90
            ++ R+G++L R+TL+ W G  + LLEPL + + + VL +  + ADD PV++  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  91   TARLWTYARDERPWGGDTPPAAWYRFSGDRKGQHPKDHLARYRGWMHADGYAGFEDLYRS  150
            TARLW Y RD+R  G++ PPA W+ +S DRKG HP++HLA Y G ++AD+Y+G+  LY S
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  151  GSIREVACMAHVRRKFVDIHRSQGSPIAEEAIGRIAQLYAVEKEARGSPPDRRAELRQAH  210
            G I E ACMAH RRK+ D+H    + I+ EA+ RI++LY++E E RG ++++R   R+A+
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  211  SAPIFDNLERWLALQLTTVSGKSPLASAIRYALARMERMRPYLDHGILELDNNVAERGVR  270
            +AP+ ++L  ++  Q+ T+S  S  A A+ Y L +   +  Y  +G +E+DNN+AE ++R
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  271  AVALGRKNYLFVGSEAGGKAAAIAYTLIETAKLNAIDPHAWLADTLARIPDYKITKVDDL  330
            AV+LGRKN+LF GS+ GG  +A+ Y+LI T KLN +DP++ L + L+ I+D  + +V +L
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  331  LPWK  334
            LPW+
Sbjct  301  LPWR  304

34) Pden_3593 in NC_008687


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 137/304 (46%), Positives = 214/304 (71%), Gaps = 0/304 (0%)

Query  98   IFDREGLDLDRSTLADWVGKSTALLEPLAEAIGRHVLSAEAIFADDTPVSMLAPGTGKTQ  157
            ++ R+G++L R+TL+ W G  + LLEPL + + + VL +  + ADD PV++  PG+GKT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  158  TARLWTYARDERPWGGDTPPAAWYRFSGDRKGQHPKDHLARYRGWMHADGYAGFEDLYRS  217
            TARLW Y RD+R  G++ PPA W+ +S DRKG HP++HLA Y G ++AD+Y+G+  LY S
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  218  GSIREVACMAHVRRKFVDIHRSQGSPIAEEAIGRIAQLYAVEKEARGSPPDRRAELRQAH  277
            G I E ACMAH RRK+ D+H    + I+ EA+ RI++LY++E E RG ++++R   R+A+
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  278  SAPIFDNLERWLALQLTTVSGKSPLASAIRYALARMERMRPYLDHGILELDNNVAERGVR  337
            +AP+ ++L  ++  Q+ T+S  S  A A+ Y L +   +  Y  +G +E+DNN+AE ++R
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  338  AVALGRKNYLFVGSEAGGKAAAITYTLIETAKLNAIDPHAWLADTLARIPDYKITKVDDL  397
            AV+LGRKN+LF GS+ GG  +A+ Y+LI T KLN +DP++ L + L+ I+D  + +V +L
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  398  LPWK  401
            LPW+
Sbjct  301  LPWR  304

35) AZL_027850 in NC_013854


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  231 bits (863),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 133/291 (46%), Positives = 210/291 (73%), Gaps = 5/291 (1%)

Query  1    MAPLAEAIGRHVLAGSVLHADDTPVPVLDPGRGTTKTGRLWVYLRDERPHAGQGPPAVLY  60
            + PL + + + VL  + +HADD PVPV +PG G T+T+RLWVY+RD+R  ++Q PPAV +
Sbjct  25   LEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWF  84

Query  61   RYTPDRKGEHPQRELAGFRGHLHADGYGGFDALYEAKGGKPAAVAEVACMAHVRRKFFDE  120
             Y+PDRKG HPQ +LAG+ G L+AD+YGG+ ALYE+     + ++E ACMAH RRK+ D 
Sbjct  85   AYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES-----GRITEAACMAHARRKIHDV  139

Query  121  HTETGSPLAADALKRIGRLFDIERPLTGQPAEDRRRIRQAEARPVLDELATFLDAALVRI  180
            H+   + ++++AL+RIG L+ IE  + G +AE+R   R+A A P+++ L   ++  +  +
Sbjct  140  HARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTL  199

Query  181  PGKGDLAKAIRYARSRWTALTRYVDDGRLENSNNAAERAIRPLAIGRRNWMFAGSDAGGE  240
            +  +D AKA+ Y   +W AL  Y  +G++E  NN AE A+R++++GR+N +F GSD GGE
Sbjct  200  SRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGE  259

Query  241  RAAAIYTIVESAKLNGLDPQAYLRHVLDRIADHPINRIADLLPWNLTIPDH  291
            R+A +Y+++ + KLN++DP++YLRHVL+ IAD P+NR+++LLPW +++P +
Sbjct  260  RGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  310

36) AZL_c03980 in NC_013857


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  220 bits (818),  Expect = 9e-59, Method: Compositional matrix adjust.
 Identities = 138/298 (47%), Positives = 211/298 (71%), Gaps = 5/298 (1%)

Query  10   IYAREGVELERSLLADWVGKaaalmaplaeaIGRHVLAGSVLHADDTPVPVLDPGRGTTK  69
            +Y R+GVEL R+ L+ W G  A L+ PL + + + VL  + +HADD PVPV +PG G T+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  70   TGRLWVYLRDERPHAGQGPPAVLYRYTPDRKGEHPQRELAGFRGHLHADGYGGFDALYEA  129
            T+RLWVY+RD+R  ++Q PPAV + Y+PDRKG HPQ +LAG+ G L+AD+YGG+ ALYE+
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  130  KGGKPAAVAEVACMAHVRRKFFDEHTETGSPLAADALKRIGRLFDIERPLTGQPAEDRRR  189
                 + ++E ACMAH RRK+ D H+   + ++++AL+RIG L+ IE  + G +AE+R  
Sbjct  121  -----GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLA  175

Query  190  IRQAEARPVLDELATFLDAALVRIPGKGDLAKAIRYARSRWTALTRYVDDGRLENSNNAA  249
             R+A A P+++ L   ++  +  ++  +D AKA+ Y   +W AL  Y  +G++E  NN A
Sbjct  176  ARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIA  235

Query  250  ERAIRPLAIGRRNWMFAGSDAGGERAAAIYTIVESAKLNGLDPQAYLRHVLDRIADHP  307
            E A+R++++GR+N +F GSD GGER+A +Y+++ + KLN++DP++YLRHVL+ IAD P
Sbjct  236  ENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWP  293

37) c0259 in NC_004431


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  210 bits (783),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 134/252 (54%), Positives = 182/252 (73%), Gaps = 4/252 (1%)

Query  18   IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTK  77
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGRIWTYVRDDRNAGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSA  137
            T+R+W YVRDDRNAGS  PPAVWFAYSP+R+G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEVACCAHARRKIHDVYISSKSAMAEEALKRISELYAIEDEIRGLPESERLAV  197
              E+G +TE AC AHARRKIHDV     + ++ EAL+RI+ELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQQRSKALLTSLHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYRDDGLAEADNNTAE  257
            R+ R+ +L+ SL +++ ++  TLS+ S  + AF+Y+L+QW AL  Y  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKN  269
             ALRAV LG+KN
Sbjct  237  NALRAVSLGRKN  248

38) i14_0240 in NC_017652


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  210 bits (783),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 134/252 (54%), Positives = 182/252 (73%), Gaps = 4/252 (1%)

Query  18   IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTK  77
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGRIWTYVRDDRNAGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSA  137
            T+R+W YVRDDRNAGS  PPAVWFAYSP+R+G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEVACCAHARRKIHDVYISSKSAMAEEALKRISELYAIEDEIRGLPESERLAV  197
              E+G +TE AC AHARRKIHDV     + ++ EAL+RI+ELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQQRSKALLTSLHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYRDDGLAEADNNTAE  257
            R+ R+ +L+ SL +++ ++  TLS+ S  + AF+Y+L+QW AL  Y  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKN  269
             ALRAV LG+KN
Sbjct  237  NALRAVSLGRKN  248

39) i02_0240 in NC_017651


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  210 bits (783),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 134/252 (54%), Positives = 182/252 (73%), Gaps = 4/252 (1%)

Query  18   IFARQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTK  77
            ++ RQGVELSRA L+ W +A  +L+ PL D L +YV+   K+H+DD PV V  PG  KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   TGRIWTYVRDDRNAGSSSPPAVWFAYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSA  137
            T+R+W YVRDDRNAGS  PPAVWFAYSP+R+G HP++HL  + G+LQADA+ GY  L+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY--  118

Query  138  EREGGALTEVACCAHARRKIHDVYISSKSAMAEEALKRISELYAIEDEIRGLPESERLAV  197
              E+G +TE AC AHARRKIHDV     + ++ EAL+RI+ELY+IE E+RG +  +RLA 
Sbjct  119  --ESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAA  176

Query  198  RQQRSKALLTSLHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYRDDGLAEADNNTAE  257
            R+ R+ +L+ SL +++ ++  TLS+ S  + AF+Y+L+QW AL  Y  +G  E DNN AE
Sbjct  177  RKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE  236

Query  258  RALRAVCLGKKN  269
             ALRAV LG+KN
Sbjct  237  NALRAVSLGRKN  248

40) ECABU_c02340 in NC_017631


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  188 bits (697),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 121/228 (54%), Positives = 164/228 (72%), Gaps = 4/228 (1%)

Query  1    MTPLNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWF  60
            + PL D L +YV+   K+H+DD PV V  PG  KT+T+R+W YVRDDRNAGS  PPAVWF
Sbjct  25   LEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWF  84

Query  61   AYSPNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACCAHARRKIHDVY  120
            AYSP+R+G HP++HL  + G+LQADA+ GY  L+    E+G +TE AC AHARRKIHDV 
Sbjct  85   AYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY----ESGRITEAACMAHARRKIHDVH  140

Query  121  ISSKSAMAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMVEKNGTLS  180
                + ++ EAL+RI+ELY+IE E+RG +  +RLA R+ R+ +L+ SL +++ ++  TLS
Sbjct  141  ARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLS  200

Query  181  KKSRLGEAFSYVLNQWDALCYYRDDGLAEADNNTAERALRAVCLGKKN  228
            + S  + AF+Y+L+QW AL  Y  +G  E DNN AE ALRAV LG+KN
Sbjct  201  RHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKN  248

41) DSC_14545 in NC_016147


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  170 bits (628),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 127/302 (43%), Positives = 195/302 (65%), Gaps = 7/302 (2%)

Query  18   IYARSGVPLSRSTLAEWIGAVGVALQPLVDATRQALLSCPVLHADETPVAQLEPGRGQTR  77
            +Y R GV LSR+TL+ W GAV+  L+PL D  RQ +L    +HAD+ PV+  EPG G+TR
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  78   RAYLFAY-----RSDSERPLIV-FDYCASRSGVHAQRFLGEWRGALMVDDFAGYKALFAD  131
             A L  Y      ++S+ P  V F Y + R G+H+Q  L+   G L  D ++GY+AL+  
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  132  G-VTELGCWAHARRKFVDLEKASGSAIAPEALHRIAALYRIEHEVRGADPHTRHAYRQQH  190
            G +TE +C AHARRK+ D++    + I+ EAL+RI+ LY IE EVRG  ++ R A R+ +
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  191  AAPIVAALHEWLRELHPKVLGSSGTDRAIAYTLKRWPALVCYLDDGRYPIDNNPIENAIR  250
            AAP++ +L +++++    +   S+T +A+AY LK+W AL  Y  +G+  IDNN  ENA+R
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  251  PIALGRKNWLFAGSGPAGRRACAIMSLLATAKANGHDPHAWLSDVLERLPVTRNSDIATL  310
            +++LGRKN LF GS+ +G R+  + SL++T K N+ DP++ L +VL  ++    + ++ L
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSEL  300

Query  311  LP  312
            LP
Sbjct  301  LP  302

42) AZL_004640 in NC_013854


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  167 bits (616),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

43) AZL_b01290 in NC_013856


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  167 bits (616),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

44) AZL_b06050 in NC_013856


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  167 bits (616),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

45) AZL_c03960 in NC_013857


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  167 bits (616),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

46) AZL_c04000 in NC_013857


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  167 bits (616),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

47) AZL_b01900 in NC_013856


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  166 bits (615),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

48) AZL_f01480 in NC_013860


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  166 bits (615),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 121/273 (45%), Positives = 181/273 (67%), Gaps = 17/273 (6%)

Query  19   DTTVPVL--AKGKTDTGRIWVYVRDDRPFagaaapaaLFHYSRDRGGGHPEAHLAGWAGV  76
            D  VPV   + GKT T+R+WVYVRDDR  ++  +PA  F YS DR G HP+ HLAG +GV
Sbjct  46   DIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV  105

Query  77   LQADAYAGYNRLYDASRQPEPVAEVLCWAHARRKFFELADIAANKRRGKGAPPISPLALE  136
            LQADAY+GY  LY+++R    ++E  C AHARRK+ ++        +++ +  I+    E
Sbjct  106  LQADAYGGYRALYESGR----ITEAACMAHARRKIHDV--------HARVPTDITT---E  150

Query  137  AVRRIDPLFDIEREALGRSAADRLAVRTELSKPQVEELENWMRTARAGMSKHAPVAKAMD  196
            A++RI+ L+ IE E  G SA +RLA R   + P ++ L ++++     +S+H+  AKA  
Sbjct  151  ALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFA  210

Query  197  YMLTRWEGFTRFLRDGRVCLTNNAAERALRGIALGRKAWLFCGSDRGGQRAAAMYSLIVT  256
            Y+L +W ++  +  +G+V + NN AE ALR+++LGRK  LF GSD+GG+R+A +YSLI T
Sbjct  211  YLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGT  270

Query  257  AKMNDIDPQAWLADVLARINDLPQTKLHELLPW  289
             K+ND+DP++ L +VL+ I D P  ++ ELLPW
Sbjct  271  CKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303

49) PA14_51550 in NC_008463


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  154 bits (568),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 109/268 (41%), Positives = 171/268 (64%), Gaps = 5/268 (1%)

Query  104  IFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGVIHADETPVQMLAPGEKKTH  163
            ++ R G+ ++R+TL++W G  +  L+PL D LR+ VL  G +HAD+ PV +  PG  KT+
Sbjct  1    MYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTR  60

Query  164  RAYVWAY---STTPFSGLKAVV-YDFSPSRAGEHARNFLGDWNGKLVCDDFAGYKAGFEQ  219
             A +W Y      + S + + V + +SP R G H++N L++ +G L  D ++GY+A +E 
Sbjct  61   TARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES  120

Query  220  G-ITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQARDMSDEERWRIRQEL  278
            G ITE +CMAHARRK+ D+H    ++++ +AL+ I+ LY +E + R+ S E+R   R+  
Sbjct  121  GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKAR  180

Query  279  AVPILKKLHDWMLAQRDLVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIR  338
            A P+++ L D++  Q   ++  S TAKA+ Y LK+W AL  Y  +G V IDNN  EN +R
Sbjct  181  AAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALR  240

Query  339  PWALGRSNWLFAGSLRSGKRAAAIMSLI  366
            + +LGR N LF GS ++G R+A + SLI
Sbjct  241  AVSLGRKNFLFFGSDHGGERGALLYSLI  268

50) tnp20 in NC_006513


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  150 bits (554),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 100/246 (41%), Positives = 152/246 (62%), Gaps = 6/246 (2%)

Query  45   QRSDVALPRSTQSEWLGRIGVALSPLYARLSEHLLAGTVLHADETPVEQLDPGRGKTKRA  104
            +R +V L+R+T + W G ++  L PLY  L + +L    +HAD+ PV   +PG GKT+ A
Sbjct  3    RRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTA  62

Query  105  YLWAYRSNTLGAD---PPIIIFDYQPGRGGQYPQAFLKGWKGMLMVDDYVAYKALF-GNQ  160
             LW Y  +   A+   PP + F Y P+R G  PQ  L G  G+L  D Y +Y+AL+ + +
Sbjct  63   RLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGR  122

Query  161  VGELACMAHARRKYFELHQANQSPVAAEALQRIGELYALEEQARDVSIEARAELRAQYAR  220
            + E ACMAHARRK  ++H    + +++EALQRIGELY++E + R+ S E R   R   A 
Sbjct  123  ITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAA  182

Query  221  PRLEAMYLWLVQTRKTVADGAALARAIDYSLKRWPALARYASRGDW-PIANNPIENAIRP  279
            P ++++Y ++ Q  KT++  +  A+A+ Y LK+W AL  Y S G W  I NN  ENA+R+
Sbjct  183  PLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNG-WVEIDNNIAENALRA  241

Query  280  IALGKN  285
            ++LG++
Sbjct  242  VSLGRK  247

51) ACMV_20370 in NC_015186


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  142 bits (521),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 112/273 (42%), Positives = 185/273 (68%), Gaps = 7/273 (2%)

Query  1    MAQEKIFADDTTLPVLDPGRGRTKTGRLWCYAVDDRPWCGQAPPAVAFVYATDRKGERPA  60
            +   K+ ADD  +PV +PG G+T+T+RLW Y  DDR   +Q PPAV F Y+ DRKG +P 
Sbjct  37   LMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQ  96

Query  61   AHLSSFRGILQVDGYAGFGKVVKERDDDALAQAFCWTHARRGFHEFHQATQSPiaaeala  120
             HL+++ G+LQ D+Y+G+  +    + + +++A C +HARR +H+ H    + I++EAL 
Sbjct  97   NHLAGYSGVLQADAYGGYRALY---ESGRITEAACMAHARRKIHDVHARVPTDITTEALQ  153

Query  121  riarlyaieaeirGQsaerrlavrrersrTEIEAMHAWLDEQLPRISKGSELAKAMRYVM  180
            RI+ LY+IEAE+RG SAE+RLA R+ R+   ++++  ++++Q+  +S+ S+ AKA  Y++
Sbjct  154  RIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLL  213

Query  181  RHWEGLTRFLDDGRIELDTNTVEREIRRIPLGRKNALFAGNDTGAEHWALMATLIGSAKL  240
            ++W +L  +  +G++E+D N  E  +R ++LGRKN LF G+D G+E+ AL+ +LIG+ KL
Sbjct  214  KQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKL  273

Query  241  SGVEPLAWLTEILERIVA-GTTRANEIDTLLPW  272
            ++V+P + L ++L  I      R +E   LLPW
Sbjct  274  NDVDPESYLRHVLGVIADWPVNRVSE---LLPW  303

52) PAU_03326 in NC_012962


> AF200692|9|G9|12643211|AAK00463.1|Shigella_flexneri_2a_YSH6000T|+|14906..15838|-|-|unknown
Length=310

 Score =  126 bits (461),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 143/221 (65%), Gaps = 1/221 (0%)

Query  4    YELHPGRSGRYAQSLLKDWSGGTLVTDDYAGYNALHARADITEAGCWAHARRKFFDQYKA  63
            +   P+R G  +Q+ L + SG  L +D Y+GY AL   + ITEA+C AHARRK+ D    
Sbjct  84   FAYSPDRKGIHPQNHLAGYSG-VLQADAYGGYRALYESGRITEAACMAHARRKIHDVHAR  142

Query  64   SQSPVAKQALEGIRELYKLERKIKHQPPDKrrqwrqryarsrLNEFRSWLQTMQTQTAPH  123
              + ++ +AL+ I ELY +E  ++  ++++R   R+  A + ++ +  ++Q      + H
Sbjct  143  VPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRH  202

Query  124  SGLRKAIDYTLKRWAALVCYLDDGRVPIDNNRAENAVRGVTLGRKNWLFAGSLAAGQRAA  183
            S+  KA+ Y LK+W AL  Y  +G+V IDNN AENA+R+V+LGRKN LF GS  +G+R+A
Sbjct  203  SDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGA  262

Query  184  MIMSLLETAKANGHEPWVWLRDVLSRLPVWPNSRLNELLPW  224
            ++ SL+ T K N+ +P   LR+VL+ ++ WP +R++ELLPW
Sbjct  263  LLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  303