Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of api84 gene of AJ627388

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) E2348C_2909
( - )

NC_011601
(Escherichia coli E2348/69)

0.0

2) unnamed
( - )

NC_007608
(Shigella boydii Sb227)

0.0

3) ECED1_5133
( - )

NC_011745
(Escherichia coli ED1a)

0.0

99.5

• Sequence Alignments

1) E2348C_2909 in NC_011601


>AJ627388|88|G85|49658931|CAF28558.1|Yersinia_pseudotuberculosis_32777|+|85460..86239|api84|-|putative 
          Length = 780

 Score = 1423 bits (3672), Expect = 0.0
 Identities = 735/750 (98%)
 Strand = Plus / Plus

Query: 1   atgatggaactgcaacatcaacgactgatggcgctcgccgggcagttgcaaccggaaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1   atgatggaactgcaacatcaacgactgatggcgctcgccgggcagttgcaactggaaagc 60

Query: 61  cttataagcgcagcgcctgcgttgtcacaacaggcagtagaccaggaatggagttatatg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cttataagcgcagcgcctgcgctgtcacaacaggcagtagaccaggaatggagttatatg 120

Query: 121 gactttctggagcatcggcttcatgaagaaaaactggcacgtcatcaacgtaaacaggcg 180
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacttcctggagcatctgcttcatgaagaaaaactggcacgtcatcaacgtaaacaggcg 180

Query: 181 atgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgacttcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgacttcaca 240

Query: 241 ttcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttcatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttcatagaa 300

Query: 301 cgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctggcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctggcaata 360

Query: 361 gcgatgggctaggaagcagtccgtgcaggtatcaaggttcgcttcacaacagcagcagat 420
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 361 gcgatgggctatgaagcagtccgtgcaggtatcaaagttcgcttcacaacagcagcagat 420

Query: 421 ctgttacttcagttatttacggcacaacgtcagggccgttataaaacgacgcttcagcgt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgttacttcagttatctacggcacaacgtcagggccgttataaaacgacgcttcagcgt 480

Query: 481 ggagtaatgaccccccgcctgctcatcattgatgaaataggctatctgccgttcagtcag 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggagtaatggccccccgcctgctcatcattgatgaaataggctatctgccgttcagtcag 540

Query: 541 gaagaagcaaagctgtacttccaggtcatcgctaaacgttacgaaaagagcgcaatgatc 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagaagcaaagctgttcttccaggtcatcgctaaacgttacgaaaagagcgcaatgatc 600

Query: 601 ctgacatccaatttgtcgttcgggcagtgggatcaaacgttcgccggtgatgcagccctg 660
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 601 ctgacatccaatctgccgttcgggcagtgggatcaaacgttcgccggtgatgcagcactg 660

Query: 661 acctcagcgatgctggaccgtatcttacactactcacatgtcattcaaatcaaaggagaa 720
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 661 acctcagcgatgctggaccgtatcttacaccactcacatgtcgttcaaatcaaaggagaa 720

Query: 721 agctatcgactcagatagaaacgaaaggcc 750
           ||||||||||||||| ||||||||||||||
Sbjct: 721 agctatcgactcagacagaaacgaaaggcc 750

2) unnamed in NC_007608


>AJ627388|88|G85|49658931|CAF28558.1|Yersinia_pseudotuberculosis_32777|+|85460..86239|api84|-|putative 
          Length = 780

 Score = 1398 bits (3607), Expect = 0.0
 Identities = 718/725 (99%)
 Strand = Plus / Plus

Query: 1   aaagccttataagcgcagcgcctgcgctgtcacaacaggcagtagaccaggaatggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  aaagccttataagcgcagcgcctgcgctgtcacaacaggcagtagaccaggaatggagtt 115

Query: 61  atatggacttcctggagcatctgcttcatgaagaaaaactggcacgtcatcaacgtaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atatggacttcctggagcatctgcttcatgaagaaaaactggcacgtcatcaacgtaaac 175

Query: 121 aggcgatgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aggcgatgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgact 235

Query: 181 tcacattcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcacattcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttca 295

Query: 241 tagaacgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tagaacgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctgg 355

Query: 301 caatcgcgatgggctatgaagcagtccgtgcaggtatccaagttcgcttcacaacagcag 360
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 caatagcgatgggctatgaagcagtccgtgcaggtatcaaagttcgcttcacaacagcag 415

Query: 361 cagatctgttacttcagttatctacggcacaacgtcagggccgttataaaacgacgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagatctgttacttcagttatctacggcacaacgtcagggccgttataaaacgacgcttc 475

Query: 421 agcgtggagtaatggccccccgcctgctcatcattgatgaaataggctatctgccgttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agcgtggagtaatggccccccgcctgctcatcattgatgaaataggctatctgccgttca 535

Query: 481 gtcagaaagaagcaaaactgttcttccaggtcatcgctaaacgttatgaaaagagcgcaa 540
           ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 536 gtcaggaagaagcaaagctgttcttccaggtcatcgctaaacgttacgaaaagagcgcaa 595

Query: 541 tgatcctgacatccaatctaccgttcgggcagtgggatcaaacgttcgccggtgatgcag 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgatcctgacatccaatctgccgttcgggcagtgggatcaaacgttcgccggtgatgcag 655

Query: 601 cactgacctcagcgatgctgggccgtatcttacaccactcacatgtcgttcaaatcaaag 660
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cactgacctcagcgatgctggaccgtatcttacaccactcacatgtcgttcaaatcaaag 715

Query: 661 gagaaagctatcgactcagacagaaacgaaaggccggggttatagcagaagctaatcctg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gagaaagctatcgactcagacagaaacgaaaggccggggttatagcagaagctaatcctg 775

Query: 721 agtaa 725
           |||||
Sbjct: 776 agtaa 780

3) ECED1_5133 in NC_011745


>AJ627388|88|G85|49658931|CAF28558.1|Yersinia_pseudotuberculosis_32777|+|85460..86239|api84|-|putative 
          Length = 780

 Score = 1165 bits (3006), Expect = 0.0
 Identities = 597/600 (100%)
 Strand = Plus / Plus

Query: 1   atgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgacttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtatacccgaatggcagccttcccggcggtgaaaacgttcgaagagtatgacttcaca 240

Query: 61  ttcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttcatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcgccaccggagcaccgcagaagcaactccagtcgttacgctcactcagcttcatagaa 300

Query: 121 cgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctggcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtaatgaaaatatcgtattactggggccatcaggtgtggggaaaacccatctggcaata 360

Query: 181 gcgatgggctatgaagcagtccgtgcaggtatcaaggttcgcttcacaacagcagcagat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 361 gcgatgggctatgaagcagtccgtgcaggtatcaaagttcgcttcacaacagcagcagat 420

Query: 241 ctgttacttcagttatctacggcacaacgtcagggccgttataaaacgacgcttcagcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgttacttcagttatctacggcacaacgtcagggccgttataaaacgacgcttcagcgt 480

Query: 301 ggagtaatggccccccgcctgctcatcattgatgaaataggctatctgccgttcagtcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggagtaatggccccccgcctgctcatcattgatgaaataggctatctgccgttcagtcag 540

Query: 361 gaagaagcaaaactgttcttccaggtcatcgctaaacgttacgaaaagagcgcaatgatc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagaagcaaagctgttcttccaggtcatcgctaaacgttacgaaaagagcgcaatgatc 600

Query: 421 ctgacatccaatctgccgttcgggcagtgggatcaaacgttcgccggtgatgcagcactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgacatccaatctgccgttcgggcagtgggatcaaacgttcgccggtgatgcagcactg 660

Query: 481 acctcagcgatgctggaccgtatcttacaccactcacatgtcgttcaaatcaaaggagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acctcagcgatgctggaccgtatcttacaccactcacatgtcgttcaaatcaaaggagaa 720

Query: 541 agctatcgactcagacagaaacgaaaggccggggttatagctgaagctaatcctgagtaa 600
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 721 agctatcgactcagacagaaacgaaaggccggggttatagcagaagctaatcctgagtaa 780