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PAthogenisity Island DataBase (PAI DB)

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Homologs of CpI19_1458 gene of NC_017303_P5

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CpC231_1451
( YP_005683815.1 )

RNA polymerase factor sigma 70

NC_017301
(Corynebacterium pseudotuberculosis C231)

1e-81

100

2) CpI19_1458
( YP_005685901.1 )

RNA polymerase factor sigma 70

NC_017303
(Corynebacterium pseudotuberculosis I19)

1e-81

100

3) CpP54B96_1476
( YP_005375486.1 )

RNA polymerase factor sigma 70

NC_017031
(Corynebacterium pseudotuberculosis P54B96)

1e-81

100

4) CpPAT10_1449
( YP_005690901.1 )

RNA polymerase factor sigma 70

NC_017305
(Corynebacterium pseudotuberculosis PAT10)

1e-81

100

• Sequence Alignments

1) CpC231_1451 in NC_017301


> NC_017303_P5|8|G8|384509233|YP_005685901.1|Corynebacterium_pseudotuberculosis_I19|-|3268..3819|-|CpI19_1458|RNA 
polymerase 
factor sigma 70
Length=183

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60
            MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE
Sbjct  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60

Query  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120
            RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR
Sbjct  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120

Query  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180
            DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW
Sbjct  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180

Query  181  RRG  183
            RRG
Sbjct  181  RRG  183

2) CpI19_1458 in NC_017303


> NC_017303_P5|8|G8|384509233|YP_005685901.1|Corynebacterium_pseudotuberculosis_I19|-|3268..3819|-|CpI19_1458|RNA 
polymerase 
factor sigma 70
Length=183

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60
            MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE
Sbjct  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60

Query  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120
            RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR
Sbjct  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120

Query  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180
            DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW
Sbjct  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180

Query  181  RRG  183
            RRG
Sbjct  181  RRG  183

3) CpP54B96_1476 in NC_017031


> NC_017303_P5|8|G8|384509233|YP_005685901.1|Corynebacterium_pseudotuberculosis_I19|-|3268..3819|-|CpI19_1458|RNA 
polymerase 
factor sigma 70
Length=183

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60
            MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE
Sbjct  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60

Query  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120
            RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR
Sbjct  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120

Query  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180
            DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW
Sbjct  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180

Query  181  RRG  183
            RRG
Sbjct  181  RRG  183

4) CpPAT10_1449 in NC_017305


> NC_017303_P5|8|G8|384509233|YP_005685901.1|Corynebacterium_pseudotuberculosis_I19|-|3268..3819|-|CpI19_1458|RNA 
polymerase 
factor sigma 70
Length=183

 Score =  296 bits (1107),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60
            MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE
Sbjct  1    MATEPRTIKIQLKHEHTEGISERYPTTSVTYLITASEAQIMVECDLHLRRQEVADPEQAE  60

Query  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120
            RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR
Sbjct  61   RRSLHEICDELGKHDYNNAKQHLRNTTYRSVSAKDDDDEIPVIDAVASSAEDPRSRGYGR  120

Query  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180
            DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW
Sbjct  121  DGEASMRSLDQMRHGSLSLRCVRPWRVSIRRIAWWWLASICTAIPNPRSLAFWAYLNQRW  180

Query  181  RRG  183
            RRG
Sbjct  181  RRG  183