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PAthogenisity Island DataBase (PAI DB)

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Homologs of YpsIP31758_3692 gene of NC_009708_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) YpsIP31758_3692
( YP_001402646.1 )

RHS/YD repeat-containing protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

100

2) XNC1_3348
( YP_003713514.1 )

Rhs-family protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

0.0

3) api89
( YP_003041839.1 )

putative membrane-bound sugar-binding protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

0.0

4) plu4280
( NP_931456.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

0.0

5) S70_05520
( YP_006215671.1 )

Rhs-family protein

NC_017731
(Providencia stuartii MRSN 2154)

0.0

6) BB2000_1115
( YP_008397670.1 )

Rhs-family protein

NC_022000
(Proteus mirabilis BB2000)

0.0

7) SMWW4_v1c23490
( YP_007406169.1 )

RHS family protein

NC_020211
(Serratia marcescens WW4)

0.0

8) D781_0523
( YP_007343067.1 )

RHS repeat-associated core domain protein

NC_020064
(Serratia marcescens FGI94)

0.0

9) D781_2006
( YP_007344474.1 )

RHS repeat-associated core domain protein

NC_020064
(Serratia marcescens FGI94)

0.0

10) D781_0050
( YP_007342637.1 )

RHS repeat-associated core domain protein

NC_020064
(Serratia marcescens FGI94)

0.0

11) ETA_30000
( YP_001908915.1 )

membrane-bound sugar-binding protein

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

12) ETA_08660
( YP_001906810.1 )

Rhs family protein

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

13) EAM_0799
( YP_003537889.1 )

Rhs family protein

NC_013971
(Erwinia amylovora ATCC 49946)

0.0

14) EAMY_2782
( YP_003532137.1 )

hypothetical protein

NC_013961
(Erwinia amylovora CFBP1430)

0.0

15) EAM_2423
( YP_003539494.1 )

Rhs family protein

NC_013971
(Erwinia amylovora ATCC 49946)

0.0

16) EAMY_2522
( YP_003531877.1 )

hypothetical protein

NC_013961
(Erwinia amylovora CFBP1430)

0.0

17) EpC_31430
( YP_002650124.1 )

Rhs family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

18) EpC_11140
( YP_002648139.1 )

Rhs family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

19) EPYR_00900
( YP_005801651.1 )

protein rhsC

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

20) EpC_08510
( YP_002647880.1 )

Rhs family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

21) EPYR_03396
( YP_005804147.1 )

protein rhsB

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

22) EPYR_01181
( YP_005801932.1 )

protein rhsB

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

23) EbC_38070
( YP_003743185.1 )

hypothetical protein

NC_014306
(Erwinia billingiae Eb661)

0.0

24) ECL_03140
( YP_003613625.1 )

Rhs family protein

NC_014121
(Enterobacter cloacae ATCC 13047)

0.0

25) ECENHK_05765
( YP_006577664.1 )

Rhs family protein

NC_018405
(Enterobacter cloacae ENHKU01)

0.0

26) A3UG_05760
( YP_006476595.1 )

Rhs family protein

NC_018079
(Enterobacter cloacae SDM)

0.0

27) PCC21_041420
( YP_006648798.1 )

RHS-family protein

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

28) rhsD
( YP_003519371.1 )

RhsD

NC_013956
(Pantoea ananatis LMG 20103)

0.0

29) rhsD
( YP_005933273.1 )

protein rhsD precursor RhsD

NC_017531
(Pantoea ananatis AJ13355)

0.0

30) rhsD7
( YP_005196660.1 )

Rhs family protein

NC_016816
(Pantoea ananatis LMG 5342)

0.0

31) PAGR_g3082
( YP_005993796.1 )

putative membrane-bound sugar-binding protein RhsD

NC_017554
(Pantoea ananatis PA13)

0.0

32) Pecwa_0347
( YP_003257807.1 )

hypothetical protein

NC_013421
(Pectobacterium wasabiae WPP163)

0.0

33) YpsIP31758_0330
( YP_001399324.1 )

RHS/YD repeat-containing protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

34) YPK_0403
( YP_001719161.1 )

YD repeat-containing protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

35) YPTB3621
( YP_072103.1 )

hypothetical protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

0.0

36) YpsIP31758_0333
( YP_001399327.1 )

RHS/YD repeat-containing protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

37) W5S_0365
( YP_006281364.1 )

RhsA

NC_017845
(Pectobacterium sp. SCC3193)

2e-158

• Sequence Alignments

1) YpsIP31758_3692 in NC_009708


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score = 2186 bits (8305),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1419/1419 (100%), Positives = 1419/1419 (100%), Gaps = 0/1419 (0%)

Query  1     MLEAAARVGDAIGHSQALAgliggtilggliNVAGGILGGMLFAAGCASACLGVGILLIG  60
             MLEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIG
Sbjct  1     MLEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIG  60

Query  61    ASIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDK  120
             ASIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDK
Sbjct  61    ASIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDK  120

Query  121   DKAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180
             DKAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA
Sbjct  121   DKAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240
             YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300
             TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360
             DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDI  420
             GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDI
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDI  420

Query  421   IRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV  480
             IRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV
Sbjct  421   IRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV  480

Query  481   AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTA  540
             AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTA
Sbjct  481   AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTA  540

Query  541   GQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQ  600
             GQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQ
Sbjct  541   GQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQ  600

Query  601   WDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDAlggqsqllwsqqgqltgYTDCSGQ  660
             WDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQ
Sbjct  601   WDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQ  660

Query  661   PTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG  720
             PTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG
Sbjct  661   PTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG  720

Query  721   HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEE  780
             HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEE
Sbjct  721   HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEE  780

Query  781   QRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCY  840
             QRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCY
Sbjct  781   QRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCY  840

Query  841   QWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLT  900
             QWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLT
Sbjct  841   QWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLT  900

Query  901   RLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR  960
             RLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR
Sbjct  901   RLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR  960

Query  961   RRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTV  1020
             RRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTV
Sbjct  961   RRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTV  1020

Query  1021  SPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSE  1080
             SPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSE
Sbjct  1021  SPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSE  1080

Query  1081  RLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLW  1140
             RLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLW
Sbjct  1081  RLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLW  1140

Query  1141  QGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDTLYWYHTDLNGSPQEVTNAQGE  1200
             QGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDTLYWYHTDLNGSPQEVTNAQGE
Sbjct  1141  QGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDTLYWYHTDLNGSPQEVTNAQGE  1200

Query  1201  MVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEV  1260
             MVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEV
Sbjct  1201  MVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEV  1260

Query  1261  GRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGIDAITGKPYVGYA  1320
             GRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGIDAITGKPYVGYA
Sbjct  1261  GRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGIDAITGKPYVGYA  1320

Query  1321  SMQGNQIAQDVLKYRYANDFSRFGGTPPEILYDGYGQAGKYVTRGLEQRTFENLGGLDGT  1380
             SMQGNQIAQDVLKYRYANDFSRFGGTPPEILYDGYGQAGKYVTRGLEQRTFENLGGLDGT
Sbjct  1321  SMQGNQIAQDVLKYRYANDFSRFGGTPPEILYDGYGQAGKYVTRGLEQRTFENLGGLDGT  1380

Query  1381  ANKQNPVGQGNARRTEYLNAADEHLsnkngsrkggggrC  1419
             ANKQNPVGQGNARRTEYLNAADEHLSNKNGSRKGGGGRC
Sbjct  1381  ANKQNPVGQGNARRTEYLNAADEHLSNKNGSRKGGGGRC  1419

2) XNC1_3348 in NC_014228


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score = 1107 bits (4197),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/1309 (55%), Positives = 963/1309 (74%), Gaps = 28/1309 (2%)

Query  1     MPEAARLGDTIGHSSAMagliggtiigslisaaggiaagflfvagvaasCIGVGVLLIGA  60
             +  AAR+GD+IGHS A+AGLIGGTI+G+LI+ AGGI +G LF AG A++C+GVG+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SIAVGMAAGALGDKARDACVAAGASSRSPSGTITNGSANVFINNKPAAIATRSTVACSKE  120
             SIAVGMAA ALG+KARDACV AG +S SPSG+I  GSANV  N+K+AA+AT S+V+C K+
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   AGIRQMAQGSDSVFINSLPASRVGDKTTCDAAVMSGSPNVIIGGGTAATESITSEIPKWA  180
              + +Q+AQGS SVFIN+LPA+R  DKTTCDA++M GS NV+IGGGT +T +ITSEIP WA
Sbjct  122   KA-QQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YTVSDLTMFAAGLISFGGAASKGPGALQKLFSRVPGVSRISRVACRLAWLGVAIPVVGIL  240
             YTVSDLTMFAAGLISFGGA S+GPGA+QKLF+++PG  +I+++ACRLA L++ +PVVGIL
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   TNPVEVIAGQKFLNDDDELDFVFEAEFPLYWQRSYLSRYQYESALGQGWNLFWESRLTRV  300
             TNPV+V +GQKFLND+DE DF +++E+PL+WQR YLS Y YE+ LG+GWNLFWES L+RV
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   EESILWRNLSGDIIPFPDVPEGHRCFCPDAQSWLIHTEDGEWEIRDAGELVYHYVAFDNG  360
             +++ILWRN  GD IPFPD+P GH+ FCP+ Q WLIH EDG W IRDAGE VYHY  FD  
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   GISRLSHIRDNVGNEQRFHYNDQQQMVNITGCGAMNLHCDYDVMEIGNKTVSRLTTVWRE  420
             G++ L++I DNVGN Q FHYNDQQQMV+ITG G+++L+CDY      +    RLT+VW++
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY------HPERHRLTAVWQQ  414

Query  421   LYNGQRVRLCHYHYDENARLIGVSHRNDHLQRQFGWTE-QGMMAWHQDTRGLRCDYEWEQ  479
               +G+ +R  +Y+Y+E+++L +V HR+D + R+FGW E +G++ WH++  GLRCDY+W++
Sbjct  415   TPDGDIIRA-RYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQE  473

Query  480   TEDGLWRVIAQKTSEGAGYRLDYDDENLTRTAHWYDDSRTVWTLNEDHQIVHCADRNGTE  539
              +D +W V  Q T EG GYRL YD+E   RTA   D+S++VW L+E+H++ + +DR + E
Sbjct  474   IDD-IWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHE  532

Query  540   HHLLWDEFGLPNGYKNAEGHSRSGEWDKSGRLLSMTDGNGNQTQWQYQNDTDRLTFIFWP  599
              +L WD  G P GY+++ GH R  +WD  GRL+S+TD+NG +T+WQY+ +TDR TF+FWP
Sbjct  533   CQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWP  592

Query  600   DGTETVLEYDEFGRLVSETTPLKHTTRYDYGL-KTLRPSQRTDAKGGNSQFLWNGQGQLI  658
             DGT+   + D  GRL+ ET  L ++T+Y Y   +TL P   TDA GG+SQ+LW+ QGQL 
Sbjct  593   DGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLT  652

Query  659   SHADCSGQRNTWGYDDENRLSRFINALMESVSYRYDDNGQLVLVTYPDGSTEQMAWDRAG  718
             + +DCSGQ   W YD   +L    +AL + + Y+ D  G+L  VT PDGSTEQ  W  AG
Sbjct  653   GYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAG  712

Query  719   QLIYHQRNENASRGWEYNALGQIVCASDRLQRQLRYQYNAEGHLVRIENANGDRYLLNRD  778
             QL+ HQ+ +N +R W+Y+  GQI+ ++DRL R +RY+Y+AEG+LV+++N NG++Y +NRD
Sbjct  713   QLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRD  772

Query  779   AEGRLIEEIRPDDTLIRYEYNAAGLLC--TEKRMGDRVFRQPVRAVYLHYDAADNLIKRE  836
             AEGRL+EE RPDDT   Y YNA G     T++ +++     P ++  L YDA + LI R+
Sbjct  773   AEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARH  832

Query  837   TDTDNYQYQWDNMDRLLAATREPNAAGKQLGLLPNTVSFAYDALGRVIREQNGEDVLQFS  896
             T T++  YQWD+M+ LL+A R P   G +LG+L NTV+F  DALGR+ +E+NG + L + 
Sbjct  833   TLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYH  892

Query  897   HDEMDNLTELTLPQGDTLRWLYYGSGHLSAIRHNQQMITEFERDNLHRETSRTQGKLFQF  956
              D ++NLT L LP++D ++WL YGSGH+SAIR N+Q+++EFERD LHRET RTQG L Q 
Sbjct  893   YDALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQ  952

Query  957   REYDPLGRRISQYSVRDK----SATIGQGKPWRAWHYDRQDDLSLMEDHYRGWVEYLYDS  1012
             R+YD LGRR  Q S+  +     +T  QG  WRA HYD  ++L+ +ED  RG + Y YD 
Sbjct  953   RQYDVLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDE  1012

Query  1013  ESRLKKVTSVDSFEEMLWYDRADNLLERPQSMLEKEAESNKHLTPQGDRLTQWNQWRYEH  1072
             E+RL+   S +S +  + YDRADN L  P    E  + +       ++RLT+W+QW+Y+ 
Sbjct  1013  EGRLRSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHY  1072

Query  1073  DAHGNVISRGTNASNRQTYRYDGDNRLTLAEGNGMK----ASYHYDALGRRIRKVVTTWP  1128
             DA GN+  R  ++   Q YRYDGDNRL  A G+G K    A YHYDALGRR+ KVV T P
Sbjct  1073  DAFGNLSER-LEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRT-P  1130

Query  1129  TGTPQQEQTDFVWHGLKLLQERHTNTGKTQTYCYESHESYTPLACIVAKGTVHDYFWYHT  1188
              G    ++T+F+W+GL+LLQ R  ++   QTYCY+++E+YTPLACI  +   +  +WYHT
Sbjct  1131  QGN---QETHFLWQGLRLLQSRTDES--QQTYCYDPNEAYTPLACIERRYGEDTLYWYHT  1185

Query  1189  DINSAPLEVTDEDGKIAWSGKYDAFGAVNSTTMAYFTDTERSTRNFDQNLRYAGQYFDKE  1248
             D+N++P EVT+ +G + WSG+Y+ FG V   T A   +  ++  +F Q LRYAGQY+D E
Sbjct  1186  DLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDE  1245

Query  1249  TGLHFNTYRFYAPEIGRFISPDPIGLNGGVNLYVYAPNPLTWIDPLGLA  1297
             TGLH+ TYR+YAPE+GRFI+PDPIGL GG+NLY YAPNPL WIDP GLA
Sbjct  1246  TGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

3) api89 in NC_012962


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score = 1026 bits (3889),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 702/1327 (53%), Positives = 949/1327 (72%), Gaps = 31/1327 (2%)

Query  1     MPEAARLGDTIGHSSAMAGLIAGTVIGSLISAAGGILSGALFIAGLAASCIGVGVLLiga  60
             +  AAR+GD+IGHS A+AGLI+GT++G+LI+ AGGIL+G LF AG A++C+GVG+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    aiavgmaagYLGDMARDASVAAGASSRSPCGEIKTGSPNVAINNKPAAIATRSQVACSKE  120
             +IAVGMAA  LG+ ARDA V AG +S SP G I TGS+NV  N+K+AA+AT S V+C K+
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   SGIRQMAEGSDSVFINGCPAVRVGDKTVCDAAVMTGSSNVFIGGGTARKVTIVPEVPPWA  180
              + +Q+A+GS SVFING PA R  DKT CDA++M GS+NVFIGGGT   + I +E+P WA
Sbjct  122   KA-QQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YTVSDLTMLaagfasfggaaakgpgaLQKLFGKIPGAAKIRQITCRlgvlavavpvvgIL  240
             YTVSDLTM+AAG+ SFGGA ++GPGA+QKLF+K+PGA KI +I+CRL+ LA+ +PVVGIL
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   MNPVEVIAGQKFLNDEDERDFMLAGELPLDWQRSYLSRYRYDSVLGPGWSLFWESRLTRV  300
              NPV+V +GQKFLNDEDERDF L GELPL WQR YLS Y Y++VLG GW+LFWES L+RV
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   EDGLLWRSPSGDIVPFPDVPAGHRCFCPDAQSELIHTPEETWEIRDAGEQVYHYAAFDDD  360
             +DG+LWR+  GD +PFPD+PAGH+ FCP+ Q  LIH  +  W IRDAGE VYHY+ FD +
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   GISRLSHIRDNVGNEQRCHYNAQHQMVTITGSGGLTLHCDYMMRENDTQTLSRLTAVWRE  420
             G++ L++I DNVGN Q  HYN Q+QMV+ITG+GGL+L+CDY    +      RLTAVW++
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERH------RLTAVWQQ  414

Query  421   LPDGQRILLCRYHYNDQAQLTGVSHRNDSLQRQFGWTE-HGLMAWHQDARGLRCDYQWEQ  479
              PDG+ I+  RY+YN+ +QL++V HR+D++ R+FGW E HGL+ WH++  GLRCDYQW++
Sbjct  415   TPDGD-IIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQE  473

Query  480   DKEGWWRVMAQQTSEGAGYQLAYDDENLTRTAHWHDGTRTVWHLNDAHHIIHCLDRTGTE  539
               + W  V  Q+T EG GY+LAYD+E   RTA  +DG+++VW L++ H++ +  DRT+ E
Sbjct  474   IDDIW-CVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHE  532

Query  540   HHILWDEFGLPNGYKDADGNTRLSEWDQHGRQLSFTDANGNQTRWQYENDSDRLTFIFWP  599
              ++ WD  G P GY+ + G+ R  +WD+ GR +S TDANG +TRWQYE ++DR TF+FWP
Sbjct  533   CQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWP  592

Query  600   DGTETALTYDNLGRLISETSPLKqtthyhyrhrhtqrPDRRTDVKGGESQFLWNEQGQLI  659
             DGT+     D  GRL+ ET  L Q+THY Y H +T  PD  TD  GG+SQ+LW++QGQL 
Sbjct  593   DGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLT  652

Query  660   RHADCSGQSTIWSYDRENRLEKVTNALMESTRYHYGDDGQLIQVTYPDDSTEQMTWDPAG  719
               +DCSGQ+T W YD   +L    +AL +  RYH +  G+L +VT PD+STEQ  W PAG
Sbjct  653   GYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAG  712

Query  720   QLISHQRNQNPPRHWAYNARGQVVCTTDRLQRQVYYHYNPEGHLIRLDNANEGRYLLNRD  779
             QL+ HQ+ +N PRHW Y+ RGQ++ TTDRL R + Y+Y++EG+L++LDN N G+Y +NRD
Sbjct  713   QLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRD  772

Query  780   AEGRLIEEIRPDDTLIQYEYNAAGLLS--LERRLGDRVFRHPERRVHQHYDAAGYLIQRE  837
             AEGRL+EE RPDDT   Y YNA G  +   +R L++     PE+  +  YDA G LI R+
Sbjct  773   AEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARH  832

Query  838   THTDTYQYQWDNMGRLLTARREPNDNGKQLGIEPNTVRFNYDAVGRVIREQNGDDSLQFS  897
             T T+   YQWD+MG LL+A R P ++G +LGI  NTV F+ DA+GR+ +E+NG ++L + 
Sbjct  833   TLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYH  892

Query  898   YDELDNLTALTLPHGGTLSWLYYGSGHLSAIRHGQTLLTEFERDRLHRETRRTQGKLFQQ  957
             YD L+NLT L LP+++ + WL YGSGH+SAIR  + L++EFERD LHRETRRTQG L QQ
Sbjct  893   YDALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQ  952

Query  958   RDYDRLGRCTHQYSLPLKQADAEPLPYLSEGKPWRAWIYNPQDELQVMEDHYRGVIEYLY  1017
             R+YD LGR   Q S++ + ++A   P   +G  WRA  Y+  +EL  +ED  RG++ Y Y
Sbjct  953   RQYDVLGRRRWQSSISSRLTEALTTP--EQGILWRAYHYDELHELAAVEDSNRGMLSYGY  1010

Query  1018  DSESRLKKVTHWGSAYDDMLWYDRADNLLEQPQAILEREAAERGLSKTMEPQGDRLNHWR  1077
             D E+RL+       + +  + YDRADN L  P    E  +  R+     +   +RL +W 
Sbjct  1011  DEEGRLRSTVS-PHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCD---NRLTRWE  1066

Query  1078  DWCYEHDTHGNVISRGRETRETQHYRYDGDNRLTVA----VIGTTTARYHYDALGRRIRK  1133
             +W Y+ D+ GN+  R    R TQ+YRYDGDNRL  A      G   A+YHYDALGRR+ K
Sbjct  1067  QWQYHYDAFGNLSERLEGYR-TQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSK  1125

Query  1134  VVKIGIDGLARYEQTDFVWHGLRLLQERDGKSGETQTYCYESHDSYTPLASIVTRGATHN  1193
             VV+   +     ++T+F+W+GLRLLQ R + S   QTYCY+++++YTPLA I  R + + 
Sbjct  1126  VVRTPQGN----QETHFLWQGLRLLQSRTDES--QQTYCYDPNEAYTPLACIERRYGEDT  1179

Query  1194  YFWYHTDINGAPLEVTDEEGKIAWAEKYSTFGELGGTPLDYFTDPDRSSWSSRFRQNLRY  1253
              +WYHTD+NG+P EVT+ +G + W+ +Y+ FG++         +  ++   ++FRQ LRY
Sbjct  1180  LYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKP--LGQFRQPLRY  1237

Query  1254  AGQYFDKETGLHFNTYRYYAPEIGRFISPDPLGLEGGPNPYSYVHNPANWIDPFGLAACP  1313
             AGQY+D ETGLH+ TYRYYAPE+GRFI+PDP+GL GG N Y Y  NP  WIDP GLA+ P
Sbjct  1238  AGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSP  1297

Query  1314  TQKYEVS  1320
             T   +++
Sbjct  1298  TTATHIT  1304

4) plu4280 in NC_005126


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score = 1016 bits (3850),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 709/1308 (55%), Positives = 954/1308 (73%), Gaps = 26/1308 (1%)

Query  1     MPEAARLGDTIGHSgalagliggtilgaaisaiggivggalFAAGIAssclgvgilligl  60
             +  AAR+GD+IGHS ALAGLIGGTILG+ I+  GGI+GG LFAAG AS+CLGVGILLIG 
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    svavgMLASHLGEMARDNCTKSGAASRSPCGTITRGSSNVFINGKPAAIATYSQVGCDKD  120
             S+AVGM A+ LGE ARD C  +G  S SP G+I  GS+NV  N+K+AA+AT S V CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GTRQMAEGSSSVFVNGYPLARVGDKTTCDAVVMTGSPNVFIGGGTKPTEAVTPEVPHWAY  180
              ++Q+A+GSSSVF+NG P AR  DKTTCDA +M GS NVFIGGGT  T ++T+E+P+WAY
Sbjct  122   KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAY  181

Query  181   QVSDLTILAAGLISFGGAAANGPSAVKKLFSKIPGAGKIGRILCRLSPLAIGASVVGILM  240
              VSDLT++AAGLISFGGA + GP+AV+KLF+K+PGA+KI++I CRL+PLAI  +VVGIL 
Sbjct  182   TVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILT  241

Query  241   NPVEVVAGQKFLNDDDELDFIIEGELPLYWQRsylssydydsVLGRswslswestltsie  300
             NPV+V +GQKFLND+DE DF ++GELPL+WQR YLSSY Y++VLGR+W+L WES+L+ ++
Sbjct  242   NPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVD  301

Query  301   EGILWRSPLGEIIPFPDVPIGYRCFCPEAQSWLMHTPEDTWEIRDASEHIYHYPEFGADS  360
             +GILWR+  G+ IPFPD+P G + FCPE Q WL+H  ++ W IRDA+E +YHY  F+A++
Sbjct  302   DGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQG  361

Query  361   TSRLSRISDNVGNEQVFHYNELQQMVNITGSGKLNLHCDYLLIELGGKSVSRLTTVWQVL  420
              + L+ I+DNVGN Q FHYN+ QQMV+ITG+G L+L+CDY           RLT+VWQ  
Sbjct  362   LAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYH------PERHRLTAVWQQT  415

Query  421   YNGSRVLLCRYHYNEHAQLVGVSHRDDHLKRQFGWHEG-GLLAWHQDARGLRCDYQWEQT  479
              +G  ++  RY+YNE +QL +V HRDD + R+FGW E+ GLL WH++  GLRCDYQW++ 
Sbjct  416   PDGD-IIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEI  474

Query  480   EEALWRVISQQTSEGAGYRLHYDEEHRVRTAQWYDGTTTVWTLNEEHQIIHCMDRAGVEH  539
             ++ +W V  Q+T EG GYRL YDEE++ RTA   DG+ +VW L+E+H++ +  DR++ E 
Sbjct  475   DD-IWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHEC  533

Query  540   HLLWDEFGLPTGYRDADGNTRRCEWDTLGRRLSFTDGNGHQTGWQYQNDTDRVTFILWPD  599
             +L WD  G PTGYR + G+ R+C+WD LGR +S TD+NG +T WQY+ +TDR TF++WPD
Sbjct  534   QLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPD  593

Query  600   GCQSVFEYDDRGRLVSETTPLKQTTRYCYGHNQTLRPYLRIDARGGESRFMWNDQGQLIR  659
             G Q   + D +GRL+ ET  L Q+T+Y Y H +TL P    DA GG+S+++W++QGQL  
Sbjct  594   GTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTG  653

Query  660   RTDCSGQASEWGYDMQYRVSRFTNALLETTSYHYHDDGQLTQVTYPDDSTERMTWDSAGQ  719
              TDCSGQ+++W YD   ++    +AL +   YH +  G+LT+VT PD+STE+  W +AGQ
Sbjct  654   YTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQ  713

Query  720   LLSYQRNENEARYWEYNVLGQVVCTTDRLQRQIRYHYTPEGYLVKIDNANGDSYILTRDA  779
             L+  Q+ +N++R W+Y+V GQ++ TTDRL R IRY+Y +EG LV +DN NG+ Y + RDA
Sbjct  714   LVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDA  773

Query  780   EGWLTEEIRPDETLIYYEYNAAGLLS--TERRMGDRVFKYPERRVHHRYDGAGNLIQRET  837
             EG+L EE RPD+T   Y YNA G  +  T+R +++     PE+  +  YD+ G LI R+T
Sbjct  774   EGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHT  833

Query  838   YTDNYQYQWDSLGRLRQAERQPNEVGKKLDILPNTVCFEYDALGRVTREQNGENILQFGY  897
              T++  YQWD +G L  A R P E G KL+IL NTV FE DALGR+T+E+NG + L + Y
Sbjct  834   LTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHY  893

Query  898   DELDNLTELTLPQGETLHWLYYGSGHLSAVRYNQQLITEFERDALHRETCRTQGALFQYR  957
             D L+NLT L LP+++ ++WL YGSGH+SA+R+N+QL++EFERDALHRET RTQG L Q R
Sbjct  894   DALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQR  953

Query  958   RYDPLSRCISQYSVPQANVQTDIKPEIWQGKPWRAWHYDIQDELFLREDHYLGRVNYSYD  1017
             +YD L+R   Q S++    ++   PE  QG  WRA HYD  +EL   ED   G ++Y+YD
Sbjct  954   QYDVLGRRRWQSSISSRLTEALTTPE--QGILWRAYHYDELHELAAVEDSNRGMLSYGYD  1011

Query  1018  LEGRLKSVDSTDSYQEMFWYDGADNLLEHPQSQRERQPVGSLTPP--GDRLSQWNNWQYE  1075
              EGRL+S  S +S Q    YD ADN L  P    E  P +  + P  ++RL++W++WQY+
Sbjct  1012  EEGRLRSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYH  1071

Query  1076  HDEHGNVISR-KNMQGQRYRYDGDNRLTTVEELSMKVV----YHYDALGRRISKVVKTGI  1130
              D  GN+  R    + QRYRYDGDNRL      + K +    YHYDALGRR+SKVV+T  
Sbjct  1072  YDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQ  1131

Query  1131  GGQARYEQTDFVWHGLRLLQDHELKTGKRQTYCYESHDSYTPLACIESRGTVREYFWYHT  1190
             G Q    +T+F+W+GLRLLQ +      +QTYCY+++++YTPLACIE R      +WYHT
Sbjct  1132  GNQ----ETHFLWQGLRLLQSR--TDESQQTYCYDPNEAYTPLACIERRYGEDTLYWYHT  1185

Query  1191  DINGAPLEVTNEAGKIVWSGKYDALGKISGLALAYFVDTDRSFHDFKQNLRYAGQYFDKE  1250
             D+NG+P EVTN  G +VWSG+Y+ +G+++  + A   +  +++ +F+Q LRYAGQY+D E
Sbjct  1186  DLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDE  1245

Query  1251  TGLHFNTYRYYAPEIGRFITPDPIGLAGGLNLYTYAPNPMSWIDPWGL  1298
             TGLH+ TYRYYAPE+GRFITPDPIGLAGGLNLY YAPNP++WIDPWGL
Sbjct  1246  TGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGL  1293

5) S70_05520 in NC_017731


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  974 bits (3691),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/1275 (48%), Positives = 885/1275 (70%), Gaps = 37/1275 (2%)

Query  2     GIGIGTSYVGIGFFAIGASVAIGYGTAKLAEWARDKCVETGSKSLSPCGEIKTGSHNVRI  61
             + G +++ +G+G++ IGAS+A+G ++  L+E ARD CV++G +SLSP G I TGS NVR 
Sbjct  44    AAGCASACLGVGILLIGASIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRT  103

Query  62    NGKAAAISTRSDVKCDKENSLRQMAQGSDSVYINGFPASRVGDKTTCDATVMEGSPNVRI  121
             N+KAAA++T S V CDK+++ +Q+AQGS SV+ING+PA+R  DKTTCDA++M GS NV I
Sbjct  104   NSKAAAVATLSAVTCDKDKA-QQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFI  162

Query  122   GGGTQATEDIEPEIPSWVTTASDLTMLFAGFLSFGGGVAKGPSAVAKLWSKLPGSAKISR  181
             GGGT++T  I +EIP W  T SDLTM+ AG++SFGG+V++GP+AV KL +KLPG+ KI++
Sbjct  163   GGGTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAK  222

Query  182   FFCRYGTVLTAMSMAIPAIGILTRPVEVIGGQKVLNGEDELDFIYESELPLHWQRNYLSS  241
             + CR    L+++++ +P +GILT PV+V +GQK LN+EDE DF  ++ELPL WQR YLSS
Sbjct  223   IACR----LAPLAIILPVVGILTNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSS  278

Query  242   YCYEGVLGRGWSFFWETQLIKTEDGFVWQNLSGDILPFPDIPLGYRSFCEAAQGWMIHND  301
             Y YEGVLGRGW++FWE+ L + +DG++W+N  GD +PFPDIP G ++FC   Q W+IH +
Sbjct  279   YVYEGVLGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLE  338

Query  302   DDSWTFQDAGELRYHYPPFDTEGRSRLSHVIDNVGNEQRFHYNEQHQLIHITGCGDLNIV  361
             D+ W ++DAGE  YHY  FD++G + L+++ DNVGN Q FHYN+Q+Q++ ITG G+L++ 
Sbjct  339   DGRWCIRDAGEWVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLR  398

Query  362   CEYQSFPFEEKTVSRLTAVYQVNANQARRRQCAYFYNEHAQLVRVEQHTDHPYRQFGWTD  421
             C+Y++         RLTAV Q  ++    R   Y YNE +QL  V+++ D   R+FGW +
Sbjct  399   CDYHP------ERHRLTAVWQQTPDGDIIRA-RYQYNESGQLAAVQHRDDTVVRRFGWGE  451

Query  422   A-GIMAWHTDKYGLRSEYRWELSDDNLWRVIENTTSEGESYRLEYDDIHLTRTAYWHDGS  480
               G++ WH +  GLR +Y+W+   D++W V E+ T EG++YRL YD+ +  RTA  +DGS
Sbjct  452   DHGLLLWHENVAGLRCDYQWQ-EIDDIWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGS  510

Query  481   TSFWQLNDNYQIIQYTDRTSIKTELLWDEFGLPCGCRNAEGHTQTSEWDELGRLLSLTDG  540
              + W L+++ ++ +YTDRT+   +L WD  G P G R++ GH +  +WDELGRL+S+TD+
Sbjct  511   QAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDA  570

Query  541   NGNQTRWQYQNERDRLIAVFWPDGSESRLEYDRFGRLIKEISPLEQTTEYRYDFKTTLRP  600
             NG +TRWQY+ + DR   VFWPDG++ R + D  GRL++E   L Q+T+Y Y    TL P
Sbjct  571   NGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLP  630

Query  601   TVRIDAKQGRSEFLWTKRGQLLRHTDCSGKQHYWHYDDEGRLVSHTNALHEATEYHYDNA  660
                 DA  G+S++LW+++GQL   TDCSG+   W+YD  G+L+ + +AL++   YH D  
Sbjct  631   DSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPV  690

Query  661   GHITRIVLPDNSTVQLAWNAAGLLTHHQRNDNTPRQWQYNAFGRVTTEIDKLARHIHYHY  720
             G++T++ LPD ST Q+ W++AG L +HQ+ +N PR+W+Y+  G++ +  D+L+R I+Y+Y
Sbjct  691   GRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRY  750

Query  721   NAEGVLISIENANGGRYLLNRDAEGRLIEEIRPDDTLLQYRYNSFGRLAEETR--LGDRV  778
             +AEG L+ ++N NGG+Y +NRDAEGRL+EE RPDDT   Y YN+ G+ ++ T+  L++  
Sbjct  751   DAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENH  810

Query  779   FPSPARTVLLQYDPAGNLVQRETLTDSYQYQWDSLNRLLVASRQPNQLGLEMGLQANQVH  838
              ++P +   L YD+ G L+ R+TLT+   YQWD +  LL A R P + G  +G+ +N V 
Sbjct  811   ASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVT  870

Query  839   FTYDALGRITREQTGDDIVEFAYDELNNLSRLTLPQGDSLNWLYYGSGHATAINHLVDGT  898
             F  DALGRIT+E+ G + + + YD L NL+RL LP++D ++WL YGSGH +AI       
Sbjct  871   FERDALGRITQEHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIRF----N  926

Query  899   PHLITEFERDDLHREISRTQGALTQYRQYDKLGRT--ISTFSSRNKPHPLNGIASSRKW-  955
              +L++EFERD LHRE  RTQG LTQ RQYD LGR    S++SSR   ++L     +  W 
Sbjct  927   DQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQSSISSR-LTEALTTPEQGILWR  985

Query  956   --FYDEQDNLGAMEDHYRGWVEYLYDSEQRLKKVSSGENMDAMLFYDRADNLLERPQSEI  1013
                YDE ++L+A+ED  RG + Y YD E RL+   S ++ ++ + YDRADN L  P    
Sbjct  986   AYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALMLPLQTP  1045

Query  1014  EAQTPSMPALSPQGDRLLQFQGWQYRHDAYGNVISRGHPNQAKQTYQYDGDNRLVIAQTS  1073
             E+   + ++ +  ++RL + + WQY+ DA+GN+  R +  ++ Q Y+YDGDNRLV A+  
Sbjct  1046  ESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRT-QRYRYDGDNRLVGAKGD  1104

Query  1074  DMK----AQYHYDALGRRIHKVVESRAYGTLKRHETHFVWQGLRLLQEQDINTGKCQTYC  1129
             + K    AQYHYDALGRR+ KVV +        +ETHF+WQGLRLLQ +  ++   QTYC
Sbjct  1105  GQKGLFEAQYHYDALGRRLSKVVRTPQ----GNQETHFLWQGLRLLQSRTDESQ--QTYC  1158

Query  1130  YEEHGSYTPLAVIVKQPAGYRYYWHHCDINSAPLDVTNEQGNTVWSGKYERFGFVRSSPL  1189
             Y+ + +YTPLA I ++ +    YW H D+N++P +VTN QG+ VWSG+Y  FG V     
Sbjct  1159  YDPNEAYTPLACIERRYGEDTLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTD  1218

Query  1190  SFYSDPERKMESFEQNLRYAGQYFDNETGLHFNTFRFYDPQIGRFIMPDPIGLLGGMNLY  1249
             +   +  + +  F Q LRYAGQY+D+ETGLH+ T+R+Y P++GRFI PDPIGL GG+NLY
Sbjct  1219  AMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLY  1278

Query  1250  AYAPNPMSWVDPFGL  1264
              YAPNP++W+DP GL
Sbjct  1279  QYAPNPLGWIDPWGL  1293

6) BB2000_1115 in NC_022000


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  894 bits (3385),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 605/1275 (48%), Positives = 876/1275 (69%), Gaps = 46/1275 (3%)

Query  1     MLEAA-RVGDIIGHSKSMWGMLVgtilgaaiaiggamiSGVLMgagiaascigigVLAIG  59
             MLEAA RVGD IGHS+++ G++ GTILG+ I ++G++++G+L +AG A++C+G+G+L IG
Sbjct  1     MLEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIG  60

Query  60    ASIAVGYGTTLLADWVRDKCVETGSKSLSPCGEILDGSKNVRINGKPAAMSTRSNVKCDK  119
             ASIAVG ++  L++  RD CV++G +SLSP G I+ GS NVR N+K+AA++T S V CDK
Sbjct  61    ASIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDK  120

Query  120   ENSERQIAQGSGSVYINGFPASRVGDKTTCDATIMEGSPNVRIGGGTQATEDIEPEIPSW  179
             ++++ Q+AQGS+SV+ING+PA+R  DKTTCDA+IM GS NV IGGGT++T  I +EIP W
Sbjct  121   DKAQ-QVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDW  179

Query  180   VTTASDLTMlfagflsfgsaaaKGPGAVAKLWSKLPGSAKISRFACRYGKIFTGLSLAIP  239
               T SDLTM+ AG++SFG+A ++GPGAV KL +KLPG+ KI+++ACR    ++ L++ +P
Sbjct  180   AYTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACR----LAPLAIILP  235

Query  240   AIGILTRPVEVIGGQKILNDEDELDFSYEAELPLYWQRNYLSSYCYEGALGRGWSFFWES  299
              +GILT PV+V +GQK+LNDEDE DF+ ++ELPL+WQR YLSSY YEG LGRGW++FWES
Sbjct  236   VVGILTNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWES  295

Query  300   QLIKSEDGFVWQNLSGDILPFPDIPLGHRNFNEAAQGWIIHHEDDSWTFQDAGELRYHYP  359
              L + +DG++W+N  GD +PFPDIP GH+ F    Q W+IH ED+ W ++DAGE  YHY 
Sbjct  296   ALSRVDDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYG  355

Query  360   PFDDKGYSRLSHIVDNVGNEQRFHYNEHHQLIHITGCGDLNIECEYQSFQLAEKTVSRLT  419
              FD +G + L++I DNVGN Q FHYN+++Q++ ITG G+L++ C+Y++         RLT
Sbjct  356   KFDAQGLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHP------ERHRLT  409

Query  420   AVYQVNPHQ--IRRRLCAYFYNESAQLIRVEQQTDHPYRQFGWTDT-GVMAWHSDKYGLR  476
             AV Q  P+   IR R   Y YNES+QL  V+++ D   R+FGW +  G++ WH +  GLR
Sbjct  410   AVWQQTPDGDIIRAR---YQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLR  466

Query  477   SEYRWALSEDNLWRVIENKTSEGESYRLEYDDINLTRTAYWHDGSTSFWQLNHDHQIIHY  536
              +Y+W    D++W V E+ T EG++YRL YD+    RTA  +DGS + W L+++H++ +Y
Sbjct  467   CDYQWQ-EIDDIWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRY  525

Query  537   TDRTGIKTALIWDEFGLPCGCRNALGHTHISEWDALGRLLSITDGNGNQTRWQYQNERER  596
             TDRT+    L WD  G P G R++ GH +  +WD LGRL+S+TD+NG +TRWQY+ + +R
Sbjct  526   TDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDR  585

Query  597   LITVFWPDNTESRLVYDSLGRLIKEISPLHQITEYRYDFKTTLRPTARIDAKQGRSEFLW  656
                VFWPD T+ R   D+ GRL++E   L Q T+Y Y    TL P +  DA  G+S++LW
Sbjct  586   QTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLW  645

Query  657   NKRGQLLRHTDCSGKQHIWCYDDEGRVVSQTNALQEATEYQYNEAGHLTRIVLPDNSTVQ  716
             +++GQL   TDCSG+   W YD  G+++ + +ALQ+   Y+ +  G+LT++ LPD ST Q
Sbjct  646   SQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQ  705

Query  717   LAWNAAGSLTHHQRNDNTPRQWQYNAFGRVTTEIDKLARHIYYHYNAQGALISIENANGG  776
             + W++AG L +HQ+ +N PR+W+Y+  G++ +  D+L+R I Y+Y+A+G L+ ++N NGG
Sbjct  706   FDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGG  765

Query  777   RYLLNRDAEGRLVEEIRPDETLLQYTYNVAGRLVEEAH--LGDRVFTSAPRTILLDYDAA  834
             +Y +NRDAEGRL+EE RPD+T   YTYN  G+  + ++  L++   +++ +   L YDA 
Sbjct  766   QYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAV  825

Query  835   GNLAKRETLTDRYQYQWDSMNRLLVASKQPNQRGLEMGLQANQVHFTYDALGRIIREQTG  894
             G L  R+TLT++  YQWD M  LL A + P ++G  +G+ +N V F  DALGRI +E+ G
Sbjct  826   GRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNG  885

Query  895   DDIVEFNYDELNNLSRLTLPQGDSLNWLYYGSGHATAINHLVDSRSQLITEFERDDLHRE  954
              + + ++YD L NL+RL LP++D ++WL YGSGH +AI        QL++EFERD LHRE
Sbjct  886   AEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIRF----NDQLVSEFERDALHRE  941

Query  955   ISRTQGELTQYRQYDKLGR-----TISTFSSRDKQHPLNGITLWRKWFYDPQDNLGAMED  1009
               RTQG LTQ RQYD LGR     +IS+  +     P +GI LWR   YD  ++L+A+ED
Sbjct  942   TRRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGI-LWRAYHYDELHELAAVED  1000

Query  1010  TYRGWVEYLYDSEQRLKKVASSENLDAMLFYDRADNLLERPQSEIDAEHSPTLELSPQGD  1069
             + RG + Y YD E RL+   S+++ ++ + YDRADN L  P    ++   +    +  ++
Sbjct  1001  SNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDN  1060

Query  1070  KLRQFQGWHYQYDAYGNVIAR--RYRNQSPQTYAYDGDNRLVIAHNQGIK----AQYHYD  1123
             +L + + W+Y+YDA+GN+  R   YR Q    Y YDGDNRLV A  +G K    AQYHYD
Sbjct  1061  RLTRWEQWQYHYDAFGNLSERLEGYRTQR---YRYDGDNRLVGAKGDGQKGLFEAQYHYD  1117

Query  1124  ALGRRIHKTVENRESGQVKRQETHFIWQGLRLLQEQDLNTGKHQTYCYEEHGSYTPLAVI  1183
             ALGRR+ K V   ++     QETHF+WQGLRLLQ +      +QTYCY+ + +YTPLA I
Sbjct  1118  ALGRRLSKVVRTPQGN----QETHFLWQGLRLLQSR--TDESQQTYCYDPNEAYTPLACI  1171

Query  1184  VKQSSGFHYYWHHCDINSAPLEVTNAQGNTLWSGKYERFGFVRNSPLSFYSDPERVMESF  1243
              ++ +    YW H D+N++P EVTNAQG+ +WSG+Y  FG V     +   +  + +  F
Sbjct  1172  ERRYGEDTLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQF  1231

Query  1244  EQNLRYAGQYFDNDK  1258
              Q LRYAGQY+D++ 
Sbjct  1232  RQPLRYAGQYLDDET  1246

7) SMWW4_v1c23490 in NC_020211


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  875 bits (3315),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 637/1298 (50%), Positives = 885/1298 (69%), Gaps = 21/1298 (1%)

Query  1     MTEAARVGDTIGHSHALAGMiagtivggliaaagalaagalfvaglaaSCIGVGVLLIGA  60
             +  AARVGD+IGHS+ALAG+I+GTI+GGLI  AG++ +G LF AG A++C+GVG+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTgeaataardgiadagagSLTPKGNIVTGSPNVFINGKPAALATNSQVACSDD  120
             S+AVG  +   +  ARD+  DAG  SL+P G IVTGS+NV  N+K+AA+AT S V+C D 
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTC-DK  120

Query  121   GPSMQMAQGSDKVSINGQPASRVGDKTNCDAQVMEGSPNVFIGGGTVTTLPIKPEVPDWL  180
             + + Q+AQGS  V ING PA+R  DKT CDA +M GS NVFIGGGT TTLPI +E+PDW 
Sbjct  121   DKAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKVSDltllfaglvggvggaagklgalgkllgklpginklARIACRAGTLMTATAAVGII  240
             Y VSDLT++ AGL++  G+ +   GA+ KL++KLPG +K+A+IACR + L    + VGI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIVSGQKFLDGEDDLDFVLPSRLPVAWQRYWRSGNPGDSVLGRGWNLFWESSLQPY  300
             + PVD+ SGQKFL++ED+ DF L + LP+ WQR   S+   ++VLGRGWNLFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   QDGLVWRAPSGDFVAFPMVPRGHKTYCEAEKCWLMHNDDGSWQLFDVGEQIFHYPPLAGD  360
             +DG++WR   GD+++FP +P GH+T+C  ++CWL+H +DG W + D GE ++HY  + ++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   QPSRLSMITDAIGNATSLFYDDEGLLSELVDSAGQRLMCRYAQGRLREVAL--QTADGER  418
               + L+ ITD +GN  S+ Y+D+  +  + +++G  L C Y   R R  A+  QT+DG+ 
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDI  420

Query  419   TLARYGYDEQGQLTTVSNRAGEVTRRFGWRD--GLMISHQDAAGLLNEYQWQEIDGVPRV  476
               ARY Y+E GQL++V +R + V RRFGW +  GL++ H++ AGL  +YQWQEID++  V
Sbjct  421   IRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV  480

Query  477   TAYRNSAGESLEFGYDFAGGRRSAVRGDGKRAEWRLDDDDNVAQYTDFDQRRYGFIYQR-  535
             +  +   G++  ++YD    +R+A   DG +A W LD+++ V++YTD   +   +  +  
Sbjct  481   AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTA  540

Query  536   GELCSVLLPGGAQRQSEWDPYGRLLSETDPLGRVTRYQYSRNSGRLFAVAYPDGSSEAQH  595
             G+  +   P G QRQ +WD  GRL+S TD+ G  TR QY RN++R   V  PDG+ E Q+
Sbjct  541   GQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQ  600

Query  596   WDTLGRPTRYVDALGNATLYRYPDDEESLPASMIDALGGEVKLEWDARGQLTRYTDCSGS  655
             WD+ GR  +  D LG++T Y YP+    LP S+ DALGG+ +L W  +GQLT YTDCSG 
Sbjct  601   WDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQ  660

Query  656   VTAYTYDALGQLTAQTDAEGHQTRYLWDNGGRLHTLIHPDGGEERFNWNAHGQLAEHQDA  715
              T   YDALGQL  + DA  ++ RY WD  GRL  +  PDG+ E+F+W++ GQL  HQ++
Sbjct  661   PTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG  720

Query  716   LGSLTRWQYNALGLPVSITDRINRTRRYHYSPQGWLTRLENGNGGEYRFSYDAVGRVLTE  775
                  +W+Y+  G  +S TDR++R  RY+Y ++G+L +L+N+NGG+Y+F+ DA GR+L E
Sbjct  721   HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEE  780

Query  776   ERPDDTRHDYRYGAAGLLEEHREVGLPGSAGELTQREQRFRFDEAGQLVWRGNASAEWHY  835
             +RPDDTR  Y Y A G   +  + GL+ + +   ++  R+ +D  G+L+ R   + +  Y
Sbjct  781   QRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCY  840

Query  836   RFDAMGRLRELNRLPTASGAALGIEPDSVQMRYDAAGRLLGEQGVNGELQYQWDALANLQ  895
             + D MG L    R PT  G  LGI  ++V    DA GR+  E+     L Y+ DAL+NL 
Sbjct  841   QWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLT  900

Query  896   ALTLPQGDRLQWLYYGSGHASAIKFNQQVVSEFTRDRLHRETGRSQGALQQQRRYDAMGR  955
              L LP++D++QWL YGSGH SAI+FN+Q+VSEF RD LHRET R+QG L QQR+YD +GR
Sbjct  901   RLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR  960

Query  956   RSWQSSAFGH--DKLTRPEDGVLWRAYRYTGRGELAGVSDALRGEVHYGYDAEGRLLQHR  1013
             R WQSS  ++  + LT PE+G+LWRAY+Y    ELA+V D+ RG + YGYD EGRL    
Sbjct  961   RRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTV  1020

Query  1014  EPNQGKPGARLVYDLADN--LLGERSPQSDIDAHLPLAPIADNRLTHWQKLFYRYDAWGN  1071
              P+ G+   +  YD ADN  +L  ++P+S   A+ +  P  DNRLT+W++  Y+YDA GN
Sbjct  1021  SPHSGQTTVH--YDRADNALMLPLQTPESSPYAR-SSQPYCDNRLTRWEQWQYHYDAFGN  1077

Query  1072  LISRRNGLYEQHYRYDADNRLVQAHGRGPQGEFEAQYHYDALGRRSRKTVRYKGKTEQTT  1131
             L  R +G   Q+YRYD+DNRLV A G G +G FEAQYHYDALGRR  K VR   + +Q T
Sbjct  1078  LSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQET  1136

Query  1132  RFLWQGYRLLQEQRDDGSRRSWSYDPASPWSPLAALEQA-GDSRSADIYWYHTDLNSAPL  1190
             +FLWQG RLLQ  R D S+++  YDP  + +PLA +E+  G+     +YWYHTDLN++P 
Sbjct  1137  HFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYGED---TLYWYHTDLNGSPQ  1192

Query  1191  EVTDAAGNLCWSGQYDTFGKLQGQTVAG--AAKRQGVQYQQPLRYAGQYQDDESGLHYNL  1248
             EVT+A G++ WSGQY+ FG++  QT A      +   Q++QPLRYAGQY DDE+GLHY  
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTT  1252

Query  1249  FRYYEPEVGRFTTQDPIGLRGGLNLYRYAPNPLGWIDP  1286
             +RYY PEVGRF T DPIGL GGLNLY+YAPNPLGWIDP
Sbjct  1253  YRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDP  1290

8) D781_0523 in NC_020064


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  868 bits (3289),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1312 (48%), Positives = 894/1312 (69%), Gaps = 22/1312 (1%)

Query  1     MGEAARVGDSIGHSHALAGMiggtfiggliaaagavaagalfvaglaaSCVGVGVLLIGA  60
             +  AARVGD+IGHS+ALAG+IGGT++GGLI  AG++ +G LF AG A++C+GVG+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLSGELATQARDGIAAAGAGSLSPKGTILTGSGNVFINGKPAAIATVSRVVCEDD  120
             S+AVG  +  L+ +ARD+   AG  SLSP G+I+TGS+NV  N+K+AA+AT+S V C+ D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDKVFINGYPAVRSGDKTNCDAQVMAGSPDVRIGGGTVTTLPIKPEVPDWL  180
               + Q+AQGS  VFING PA R  DKT CDA +M GS +V IGGGT TTLPI +E+PDW 
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKISDLTLLFAGLIGGVGGAASKLGALGRMLSKAPGINKLGRVacragalmtataatgii  240
             Y +SDLT++ AGLI+  G+ +   GA+ ++++K PG +K++++ACR ++L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   arPLDVVSGQKFLDGDDELDFVLPSRLPVAWQRYWRSGNPAEGVLGRGWSLFWESSLQIW  300
             + P+DV SGQKFL+++DE DF L + LP+ WQR   S+   EGVLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   QEGLVWRAPSGDYVSFPMVPRGHKTYCEAEKCWLMHNADGSWQVFDVSEQAWHYPRLEAQ  360
             ++G++WR   GDY++FP +P GH+T+C  ++CWL+H  DG W + D +E   HY +++AQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   QPSRLSMMTDAVGNATSLFYNDAGQLSELVDSAGQRLVCRYLTTANGALRLAAVAWQNGQ  420
               + L+ +TD VGN  S+ YND  Q+  + +++G  L C Y    +   RL+AV WQ+  
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERH---RLTAV-WQQTP  416

Query  421   DEQVL-ASYGYDDAGQLVTVRNRAGEVTRRFGW--QDGLMVSHQDQNGLLNEYRWQEIDG  477
             D +++ A Y Y+++GQL +V++R + V RRFGW  ++GL++ H++  GL  +Y+WQEID+
Sbjct  417   DGDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDD  476

Query  478   LPRVVAYRNSAGEQLSVYYDFANGTRRAVRDDGKQALWQLDDDDNVAQFTDYDSRRYGLI  537
             +  V   +   G+   + YD     R A  +DG QA+W LD+++ V+++TD  ++   L 
Sbjct  477   IWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQ  536

Query  538   Y-ARGELCSVVLPGGAQRQSEWDPYGRMLSETDPLGRTTTYQYSRNSGRLFSVTGPDGSQ  596
               + G+  +   P G QRQ +WD  GR++S TD+ G  T  QY RN++R   V  PDG+Q
Sbjct  537   WDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQ  596

Query  597   AFQHWDEQGRLVRQTDAQGQSTHYHYPDPEESLPERITDALGGEVQMVWNAQGQLTRHTD  656
               Q+WD QGRL+++TD  GQSTHY YP+P   LP+ ITDALGG+ Q++W+ QGQLT  TD
Sbjct  597   ERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTD  656

Query  657   CSGSVTAYTYDALGQLTHRTDAEGHLTRYRWDAAGRLQQLRHPDGSDEQFDWNAQGQLAA  716
             CSG  T   YDALGQL  R DA  +  RY+WD+ GRL ++  PDGS EQFDW++ GQL  
Sbjct  657   CSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVR  716

Query  717   HRDPLGSETRWQYTPLGLPDSITDRINRTRRYHYGPRGWLMRLENGNGADYQFSYDAAGR  776
             H++      +W+Y+  G   S TDR++R  RY+Y++ G+L++L+N+NG++Y+F+ DA GR
Sbjct  717   HQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGR  776

Query  777   LQVEQRPDGQRRYYHYGADGLPTTLLETGAPAADGTMAERRQHFRFDEAGQLTARTTDSA  836
             L  EQRPD+ R  Y Y ADG +T + + G +  +++ +E+  ++ +D  G+L AR T + 
Sbjct  777   LLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTE  836

Query  837   EWRYDYDADgrlttltrtptaagaalgIEPDSIRLRYDRAGNLLSEQGVNGELQYQWDAL  896
             +  Y+ D  G L +  RTPT  G  LGI  +++ +  D  G +  E+     L Y+ DAL
Sbjct  837   QTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDAL  896

Query  897   GNLQALTLPQGDRLQWLYYGSGHASAIRFNQQLVSEFSRDRLHRETGRTQGALHQRRQYD  956
             GNL  L LP++D++QWL YGSGH SAIRFN+QLVSEF RD LHRET RTQG L Q+RQYD
Sbjct  897   GNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYD  956

Query  957   ALGRRSWQSSGFSH--GQLTKPEDGVLCRVYHYSGRGEIAGVDDALRGEVRYGYDAEGRL  1014
              LGRR WQSS  S+    LT PE+G+L R YHY    E+A+V+D+ RG + YGYD EGRL
Sbjct  957   VLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL  1016

Query  1015  LQHREAQQGKPGHRLQYDMADN--LLGAQSASRALEEQLPPAPLGDNRLTHWQQLFYRYD  1072
                  ++ G+    ++YD ADN  +L  Q++  +   + ++ P  DNRLT+W+Q  Y+YD
Sbjct  1017  RSTVSPHSGQTT--VHYDRADNALMLPLQTPESSPYAR-SSQPYCDNRLTRWEQWQYHYD  1073

Query  1073  GWGNLISRRNGLYEQHYVYDADNRLTAAHGRGPQGEFRAQYHYDALGRRTRKQVDYKGKA  1132
             + GNL  R +G   Q+Y YD+DNRL +A G G +G F AQYHYDALGRR  K V    ++
Sbjct  1074  AFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQG  1132

Query  1133  AQSARFLWQGYRLLQEQRDDGTRRSWSYEPDSPWTPLAAIEQAGESRQADIFWLHSEQNG  1192
              Q ++FLWQG RLLQ  R D ++++  Y+P+ + TPLA IE+     +  ++W H++ NG
Sbjct  1133  NQETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNG  1189

Query  1193  APLEVTDGEGGLRWSGDYDTFGRLKGQTAAG--ILQRRGAAYEQPLRYAGQYQDSESGLH  1250
             +P EVT+++G + WSG+Y+ FG++  QT A    + +  + + QPLRYAGQY D E+GLH
Sbjct  1190  SPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLH  1249

Query  1251  YNLFRYYEPEVGRFTTQDPIGLQGGLNLYQYAPNPYGWVDPLGLTACSSGSS  1302
             Y  +RYY PEVGRF T DPIGL GGLNLYQYAPNP GW+DP GL++ ++ ++
Sbjct  1250  YTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTAT  1301

9) D781_2006 in NC_020064


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  862 bits (3264),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/1313 (48%), Positives = 893/1313 (69%), Gaps = 22/1313 (1%)

Query  1     MGEAARVGDSIGHSHalagmiggtliggliaaagavaagalfvaglaaSCVGVGVLLIGA  60
             +  AARVGD+IGHS+ALAG+IGGT++GGLI  AG++ +G LF AG A++C+GVG+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLSGELATQARDGIAAAGAGSLSPKGTILTGSGNVFINGKPAAIATVSRVVCEDD  120
             S+AVG  +  L+ +ARD+   AG  SLSP G+I+TGS+NV  N+K+AA+AT+S V C+ D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDKVFINGYPAVRSGDKTNCDAQVMAGSPDVRIGGGTVTTLPIKPEVPDWL  180
               + Q+AQGS  VFING PA R  DKT CDA +M GS +V IGGGT TTLPI +E+PDW 
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKISDLTLLFAGLIGGVGGAASKLGALGRMLSKAPGINKLGRVacragalmtataatgii  240
             Y +SDLT++ AGLI+  G+ +   GA+ ++++K PG +K++++ACR ++L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   arPLDVVSGQKFLDGDDELDFVLPSRLPVAWQRYWRSGNPAEGVLGRGWSLFWESSLQIW  300
             + P+DV SGQKFL+++DE DF L + LP+ WQR   S+   EGVLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   QEGLVWRAPSGDYVSFPMVPRGHKTYCEAEKCWLMHNADGSWQVFDVSEQAWHYPRLEAQ  360
             ++G++WR   GDY++FP +P GH+T+C  ++CWL+H  DG W + D +E   HY +++AQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   QPSRLSMMTDAVGNATSLFYNDAGQLSELVDSAGQRLVCRYLTTANGALRLAAVAWQNGQ  420
               + L+ +TD VGN  S+ YND  Q+  + +++G  L C Y    +   RL+AV WQ+  
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERH---RLTAV-WQQTP  416

Query  421   DEQVL-ASYGYDDAGQLVTVRNRAGEVTRRFGW--QDGLMVSHQDQNGLLNEYRWQEIDG  477
             D +++ A Y Y+++GQL +V++R + V RRFGW  ++GL++ H++  GL  +Y+WQEID+
Sbjct  417   DGDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDD  476

Query  478   LPRVVAYRNSAGEQLSVYYDFANGTRRAVRDDGKQALWQLDDDDNVAQFTDYDSRRYGLI  537
             +  V   +   G+   + YD     R A  +DG QA+W LD+++ V+++TD  ++   L 
Sbjct  477   IWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQ  536

Query  538   Y-ARGELCSVVLPGGAQRQSEWDPYGRMLSETDPLGRTTTYQYSRNSGRLFSVTGPDGSQ  596
               + G+  +   P G QRQ +WD  GR++S TD+ G  T  QY RN++R   V  PDG+Q
Sbjct  537   WDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQ  596

Query  597   AFQHWDEQGRLVRQTDAQGQSTHYHYPDPEESLPERITDALGGEVQLVWNAQGQLTRHTD  656
               Q+WD QGRL+++TD  GQSTHY YP+P   LP+ ITDALGG+ QL+W+ QGQLT  TD
Sbjct  597   ERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTD  656

Query  657   CSGSVTAYTYDALGQLTHRTDAEGHLTRYRWDAAGRLQQLRHPDGSDEQFDWNAQGQLAA  716
             CSG  T   YDALGQL  R DA  +  RY+WD+ GRL ++  PDGS EQFDW++ GQL  
Sbjct  657   CSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVR  716

Query  717   HRDPLGSETRWQYTPLGLPDSITDRINRTRRYHYGPRGWLMRLENGNGADYQFSYDAAGR  776
             H++      +W+Y+  G   S TDR++R  RY+Y++ G+L++L+N+NG++Y+F+ DA GR
Sbjct  717   HQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGR  776

Query  777   LQVEQRPDGQRRYYHYGADGLPTTLLETGAPVADGAVAERRQHFRFDEAGQLTARTTDSA  836
             L  EQRPD+ R  Y Y ADG +T + + G +  +++ +E+  ++ +D  G+L AR T + 
Sbjct  777   LLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTE  836

Query  837   EWRYDYDaggrlttltrtptaagaalgIEPDSIRLRYDRAGNLLSEQGVNGELQYQWDAL  896
             +  Y+ D  G L +  RTPT  G  LGI  +++ +  D  G +  E+     L Y+ DAL
Sbjct  837   QTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDAL  896

Query  897   GNLQALTLPQGDRLQWLYYGSGHASAIRFNQQLVSEFSRDRLHRETGRTQGALHQRRQYD  956
             GNL  L LP++D++QWL YGSGH SAIRFN+QLVSEF RD LHRET RTQG L Q+RQYD
Sbjct  897   GNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYD  956

Query  957   ALGRRSWQSSGFSH--GQLTKPEDGVLCRVYHYSGRGEIAGVDDALRGEVRYGYDAEGRL  1014
              LGRR WQSS  S+    LT PE+G+L R YHY    E+A+V+D+ RG + YGYD EGRL
Sbjct  957   VLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL  1016

Query  1015  LQHREAQQGKPGHRLQYDMADN--LLGAQSASRALEEQLPPAPLGDNRLTHWQQLFYRYD  1072
                  ++ G+    ++YD ADN  +L  Q++  +   + ++ P  DNRLT+W+Q  Y+YD
Sbjct  1017  RSTVSPHSGQTT--VHYDRADNALMLPLQTPESSPYAR-SSQPYCDNRLTRWEQWQYHYD  1073

Query  1073  GWGNLISRRNGLYEQHYVYDADNRLTAAHGRGPQGEFRAQYHYDALGRRTRKQVDYKGKA  1132
             + GNL  R +G   Q+Y YD+DNRL +A G G +G F AQYHYDALGRR  K V    ++
Sbjct  1074  AFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQG  1132

Query  1133  AQSARFLWQGYRLLQEQRDDGTRRSWSYEPDSPWTPLAAIEQAGESRQADIFWLHSEQNG  1192
              Q ++FLWQG RLLQ  R D ++++  Y+P+ + TPLA IE+     +  ++W H++ NG
Sbjct  1133  NQETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNG  1189

Query  1193  APLEVTDGEGGLRWSGDYDTFGRLKGQTAAG--IMQRRGAAYEQPLRYAGQYQDSESGLH  1250
             +P EVT+++G + WSG+Y+ FG++  QT A    + +  + + QPLRYAGQY D E+GLH
Sbjct  1190  SPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLH  1249

Query  1251  YNLFRYYEPEVGRFTTQDPIGLQGGLNLYQYAPNPYGWVDPLGLTACSIKAGR  1303
             Y  +RYY PEVGRF T DPIGL GGLNLYQYAPNP GW+DP GL++ +  A +
Sbjct  1250  YTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATH  1302

10) D781_0050 in NC_020064


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  842 bits (3188),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/1301 (45%), Positives = 848/1301 (66%), Gaps = 24/1301 (1%)

Query  68    TGELAAKARDGIAEAGAGSLTPAGKIVTGSPDVRINGKPAAIATVSRVVCEQDGPSMQMA  127
             +  L+ KARD+  +AG  SL+P+G IVTGS++VR N+K+AA+AT+S V C++D  + Q+A
Sbjct  69    ANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD-KAQQVA  127

Query  128   QGSDKVYINGRPAARVGDKTNCDAKVMEGSPNVRIGGGTVTTLPIKPEVPDWVYKISDlt  187
             QGS  V+ING PAAR  DKT CDA +M GS NV IGGGT TTLPI +E+PDW Y +SDLT
Sbjct  128   QGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLT  187

Query  188   llfaglvggvggaasklgalgRMLSKAPGINKLGRTACRFGTLMTATTAAGIIARPVDII  247
             ++ AGL++  G+ +   GA+ ++++K PG +K+++ ACR++ L       GI++ PVD+ 
Sbjct  188   MFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVT  247

Query  248   SGQKLLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESSLQTYQDGLVWR  307
             SGQK+L+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES+L   +DG++WR
Sbjct  248   SGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWR  307

Query  308   APSGDYVSFPMVPKGHKTYCEAEKCWLMHNSDDSWQVFDVSEQAWHYPALSDEQPSRLQM  367
                GDY++FP +P GH+T+C  ++CWL+H  D+ W + D +E   HY  +  +  + L  
Sbjct  308   NTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLAN  367

Query  368   VTDLAGNAVSLFHDDHGRLTELVDSAGQRLACRYLTIANGLSRLSTVLLHTPDGELPLVH  427
             +TD  GN  S+  +D+ ++  + +++G  L C Y    +   RL++V  +TPDG++   +
Sbjct  368   ITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERH---RLTAVWQQTPDGDIIRAR  424

Query  428   YAYDEEGQLVTVSNRAGEVTRRFGW--QDGLMVSHQDHNGLLNEYRWQELDGLPRVVAYR  485
             Y Y+E GQL +V +R + V RRFGW  ++GL++ H++  GL  +Y+WQE+D++  V   +
Sbjct  425   YQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQH  484

Query  486   NSAGEQLELYYDFAggmrrvvrddgrQALWQLDDDDNVAQFTDFDSRKSVFIYER-GELC  544
                G+   L YD     R    +DG QA+W LD+++ V+++TD  ++   +  +  G+  
Sbjct  485   TCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPT  544

Query  545   GVVLPGGAQRQSEWDRYGRLLSETDPLGRTTTYQYSRNSGRLFSVTYPDGSQAFQHWDTQ  604
             G   P G QRQ +WD  GRL+S TD+ G  T  QY RN++R   V  PDG+Q  Q+WD+Q
Sbjct  545   GYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  605   GRPTQQIDALGNVTRYHYPDEEESLPECVIDALGGEVKLVWNAQGLLTRYTDCSGSVTAY  664
             GR  Q+ D LG+ T+Y YP+    LP+ + DALGG+ +L+W+ QG LT YTDCSG  T  
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  665   AYDALGQLTHRTDAEGHLTRYRWDRAGRLQTLLHPDGNEELFDWNAQGQLARHQDPLGSE  724
              YDALGQL  R DA  +  RY+WD  GRL  +  PDG+ E FDW++ GQL RHQ+     
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  725   TRWQYNLLGQPVSVTDRIQRTRRYHYNCRGWLTRLENGNGADYQFSHDAVGRLMIERRPD  784
              +W+Y++ GQ +S TDR+ R  RY+Y+  G+L +L+N+NG++Y+F++DA GRL+ E+RPD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  785   SIERLYRYGPDGQLSEYREVASPDVEPQPSPRLHQFRYDEAGQLVWRANDSAEWHYHYDA  844
                  Y Y +DGQ ++  + + ++ ++ P+ +  ++ YD  G+L+ R   + +  Y+ D 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  845   AGRMNRLTRTPTAAGSELGIEPDSVQLRYDQAGNLLSEQGVNGELQYQWDALSNLQTLTL  904
              G +    RTPT  G  LGI  ++V +  D  G +  E+     L Y+ DAL+NL  L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  905   PQGDRFQWLHYGSGHASAIRFNQQLVSEFSRDRLHRETGRTQGALQQRRQYDALGRRSWQ  964
             P++D+FQWLHYGSGH SAIRFN+QLVSEF RD LHRET RTQG L Q+RQYD LGRR WQ
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  965   SSAFSH--GQITKPEEGVLWRTFRYTGRGELEGVGDALRGEIHYGYDAEGRLLQHREAQQ  1022
             SS  S+    +T PE+G+LWR+++Y    EL +V D+ RG + YGYD EGRL     ++ 
Sbjct  965   SSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHS  1024

Query  1023  GRPGHRLRYDLADN-LTGEQRVSRDPDTDLPPAPVVNNRLEYWQRMFYRYDGWGNLTRRR  1081
             G+    ++YD ADN L    + +  +    ++ P  +NRL  W++  Y+YD+ GNL+ R 
Sbjct  1025  GQTT--VHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERL  1082

Query  1082  NGVYQQHYVYDADNRLIKAHGRGPQGDFEAQYHYDALGRRTRKTVTLKGKAPETTRFVWE  1141
             +G   Q+Y YD+DNRL+ A G G +G FEAQYHYDALGRR  K V    ++ + T+F+W+
Sbjct  1083  EGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQETHFLWQ  1141

Query  1142  GYRLLQAQRDNGTRRTWSYDPASRWTPLAALEQAGDGQQADIYWLHTDLNSAPLEVTDSE  1201
             G RLLQ+ R + +++T  YDP    TPLA +E+  +  +  +YW HTDLN++P EVT+++
Sbjct  1142  GLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSPQEVTNAQ  1198

Query  1202  GNLRWSGNYDTFGKLQGQTVAG--AERRKGALIEQPLRYAGQYQDNESGLHYNLFRYYEP  1259
             G++ WSG+Y+ FG++  QT A      +  + + QPLRYAGQY D+E+GLHY  +RYY P
Sbjct  1199  GEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAP  1258

Query  1260  EVGRFTTQDPIGLRGGLNLYQYAPNPYGWVDPLGLKSCGPTRTRHVPnrhirrhnniGNS  1319
             EVGRF T DPIGL GGLNLYQYAPNP GW+DP GL + +PT + H+  + I         
Sbjct  1259  EVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAG-SPTTATHITYQGIDAITGKPYV  1317

Query  1320  KF-SLRERIKLQGKSKYKKPNQYRKLEDRTMSNPSRVIHQG  1359
              + S++     Q+  KY+ +N++ ++     + P+ ++ +G
Sbjct  1318  GYASMQGNQIAQDVLKYRYANDFSRFG----GTPPEILYDG  1354

11) ETA_30000 in NC_010694


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  823 bits (3115),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 629/1320 (48%), Positives = 881/1320 (67%), Gaps = 23/1320 (1%)

Query  1     MSEAARVGDAIGHSAALAGMISGTlvggliaaagsvaagalfvaglassCLGIGVLLIGA  60
             +  AARVGDAIGHS ALAG+I+GT++GGLI  AG++ +G LF AG AS+CLG+G+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLALGYLAGEagtaardgiaaagagsvsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+A+G  A   G  ARD+   AG  S+S+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGRPAARVGDKTNCDATVMAGSPSVRIGGGTVTTLAIKPEVPEWA  180
               + Q+AQGS  VFING PAAR  DKT CDA++M GS +V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDltllltgllggaggalskvgkvgkllgRLPGINRLGQIACRFGTLMTAGAAAGII  240
             Y  SDLT++ +GL++ +G+     G V KL+++LPG +++++IACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAEGVLGRGWSLFWESSLQRH  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   EGVLGRGW+LFWES+L R 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   GDGLAWRAPSGDLVSFPMVPCGHKTYCEAEKCWLMHNADGSWRLYDVGEQSWHYPLLDGE  360
             +DG+ WR   GD ++FP +P GH+T+C  ++CWL+H  DG W + D GE   HY  +D++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLNMLTDAAGNATSLFYDEQGRLGELVDGAGQRLGCRYLTTAAGRSRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + + +G  L C Y    + R RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GERTLVSYAYDDEGQLVTVRNRAGEVTRRFTWRD--GLMASHQDANGLLNEYQWREIDGL  478
             G+     Y Y++ GQL +V++R + V RRF W +  GL+  H++  GL  +YQW+EID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHSAGEELALHYDFNGGTRRAVRDDGMQASWQLDDDDSVAQFTD--FDGSRLAF  536
               V+  +   G+   L YD +   R A  +DG QA W LD+++ V+++TD   +  +L  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  537   VYARGELCGVLLPGGGQRRSEWDRYGRLLSETDPTGRKTLYQYDRNGDRLVCVTHPDGGR  596
               + G+  G   P G QR+ +WD  GRL+S TD+ G  T  QY+RN DR   V  PDG +
Sbjct  538   D-TAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQ  596

Query  597   EYQQWDDRGRLVKQTDAAENSTLYHYPDEEESLPTRITDALGGVARPEWNGRGLLTRYTD  656
             E QQWD +GRL+++TD   +ST Y YP+    LP  ITDALGG ++  W+ +G LT YTD
Sbjct  597   ERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTD  656

Query  657   CSGSVTAYGYDVFGQLTDRTDAEGNVTRYLWDAAGRLQTLRHADGSEEHFAWNERGQLAR  716
             CSG  T   YD +GQL  R DA  +  RY WD+ GRL  +  +DGS E+F W+  GQL R
Sbjct  657   CSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVR  716

Query  717   HQDPLGGETRWRYNLLGQPLSVTDRIDRTRSWHYSPRGWLTRLENGNGGEYRFSYDAAGR  776
             HQ+      +W+Y++ GQ LS TDR+ R    +Y + G+L +L+N+NGG+Y+F+ DA GR
Sbjct  717   HQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGR  776

Query  777   LTGERRPDNTDRLYRYGPDGQLAERRETSPQDGLTPPPHRLHRFRYDEAGRLEWRGNDSA  836
             L  E+RPD+T   Y Y +DGQ ++  + +  +  ++PP++  R+ YD  GRL  R   + 
Sbjct  777   LLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTE  836

Query  837   EWRYHYDAAGRLNalartptaagaalgIEADRVELKYDGAGNLPCERGVNGELGYRWDAL  896
             +  Y+ D  G L +  RTPT  G  LGI ++ V +  D+ G +  E+     L+Y+ DAL
Sbjct  837   QTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDAL  896

Query  897   ANLQALTLPQGDGLQWLHYGSGHVSAVKFNRQLVSEFTRDRLHRETGRSQGALHQQRRYD  956
             +NL  L LP++D +QWLHYGSGHVSA++FN QLVSEF RD LHRET R+QG L QQR+YD
Sbjct  897   GNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYD  956

Query  957   ALGRRSWQSSAFS--DGRITRPEEGILWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRL  1014
              LGRR WQSS  S     +T PE+GILWRA++Y    ELA+V D+ RG + YGYD EGRL
Sbjct  957   VLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL  1016

Query  1015  LQHRELKSGRVGGRLLYDAADN--LLGEQAPHDDPEQHPPPRPLGDNRLAHWRRLFYRYD  1072
                    SG+   +  YD ADN  +L  Q+P+  P  + +++P  DNRL++W +  Y+YD
Sbjct  1017  RSTVSPHSGQTTVH--YDRADNALMLPLQTPESSPYAR-SSQPYCDNRLTRWEQWQYHYD  1073

Query  1073  AWGNLVSRRHGVSEQHYTYDADNRLIRARGFGPQGEFSARYHYDALGRRTRKEVTYAGKS  1132
             A GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  + ++
Sbjct  1074  AFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQG  1132

Query  1133  AQTTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPEADIYWLNSDLNG  1192
              Q T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     E  +YW ++DLNG
Sbjct  1133  NQETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNG  1189

Query  1193  APLEVTDAEGNLRWSGQYDTFGRLLGQTVAGSAQRTGPV--YDQPLRYAGQYQDNESGLH  1250
             +P EVT+A+G++ WSGQY+ FG++  QT A   + + P+  + QPLRYAGQY D+E+GLH
Sbjct  1190  SPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLH  1249

Query  1251  YNLFRYYEPEVGRFTTQDPVGLAGGMNLYAYAPNPLSWIDPLGLTKC-SPNKKTTYEGVS  1309
             Y  +RYY PEVGRF T DP+GLAGG+NLY YAPNPL+WIDP GL+   +     TY+G+ 
Sbjct  1250  YTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGID  1309

12) ETA_08660 in NC_010694


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  822 bits (3112),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 626/1305 (48%), Positives = 874/1305 (67%), Gaps = 22/1305 (1%)

Query  1     MSEAARVGDAIGHSAALAGIISGTlvggliaaagsvaagalfvaglassCLGIGVLLIGA  60
             +  AARVGDAIGHS ALAG+I+GT++GGLI  AG++ +G LF AG AS+CLG+G+LLIGA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLALGYLAGEagtaardgiaaagagsvsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+A+G  A   G  ARD+   AG  S+S+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGRPAARVGDKTNCDATVMAGSPSVRIGGGTVTTLAIKPEVPEWA  180
               + Q+AQGS  VFING PAAR  DKT CDA++M GS +V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDltllltgllggaggalskvgkvgkllgRLPGINRLGQIACRFGTLMTAGAAAGII  240
             Y  SDLT++ +GL++ +G+     G V KL+++LPG +++++IACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAEGVLGRGWSLFWESSLQRH  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   EGVLGRGW+LFWES+L R 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   GDGLAWRAPSGDLVSFPMVPCGHKTYCEAEKCWLMHNADGSWRLYDVGEQSWHYPPLDGE  360
             +DG+ WR   GD ++FP +P GH+T+C  ++CWL+H  DG W + D GE   HY  +D++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLNMLTDAAGNATSLFYDEQGRLGELVDGAGQRLGCRYLTTAAGRSRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + + +G  L C Y    + R RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GERTLVSYAYDDEGQLVTVRNRAGEVTRRFTWRD--GLMASHQDANGLLNEYQWREIDGL  478
             G+     Y Y++ GQL +V++R + V RRF W +  GL+  H++  GL  +YQW+EID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHSAGEELALHYDFNGGTRRAVRDDGMQASWQLDDDDSVAQFTD--FDGSRLAF  536
               V+  +   G+   L YD +   R A  +DG QA W LD+++ V+++TD   +  +L  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  537   VYARGELCGVLLPGGGQRRSEWDRYGRLLSETDPTGRKTLYQYDRNGDRLVCVTHPDGGR  596
               + G+  G   P G QR+ +WD  GRL+S TD+ G  T  QY+RN DR   V  PDG +
Sbjct  538   D-TAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQ  596

Query  597   EYQQWDDRGRLVKQTDAAENSTLYHYPDEEESLPTRITDALGGVARPEWNGRGLLTRYTD  656
             E QQWD +GRL+++TD   +ST Y YP+    LP  ITDALGG ++  W+ +G LT YTD
Sbjct  597   ERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTD  656

Query  657   CSGSVTAYGYDVFGQLTDRTDAEGNVTRYLWDAAGRLQTLRHADGSEEHFAWNERGQLAR  716
             CSG  T   YD +GQL  R DA  +  RY WD+ GRL  +  +DGS E+F W+  GQL R
Sbjct  657   CSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVR  716

Query  717   HQDPLGGETRWRYNLLGQPLSVTDRIDRTRSWHYSPRGWLTRLENGNGGEYRFSYDAAGR  776
             HQ+      +W+Y++ GQ LS TDR+ R    +Y + G+L +L+N+NGG+Y+F+ DA GR
Sbjct  717   HQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGR  776

Query  777   LTGERRPDNTDRLYRYGPDGQLAERRETSPQDGLTPPPHRLHRFRYDEAGRLEWRGNDSA  836
             L  E+RPD+T   Y Y +DGQ ++  + +  +  ++PP++  R+ YD  GRL  R   + 
Sbjct  777   LLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTE  836

Query  837   EWRYHYDAAGRLNalartptaagaalgIEADRVELKYDGAGNLPCERGVNGELGYRWDAL  896
             +  Y+ D  G L +  RTPT  G  LGI ++ V +  D+ G +  E+     L+Y+ DAL
Sbjct  837   QTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDAL  896

Query  897   ANLQALTLPQGDGLQWLHYGSGHVSAVKFNRQLVSEFTRDRLHRETGRSQGALHQQRRYD  956
             +NL  L LP++D +QWLHYGSGHVSA++FN QLVSEF RD LHRET R+QG L QQR+YD
Sbjct  897   GNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYD  956

Query  957   ALGRRSWQSSAFS--DGRITRPEEGILWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRL  1014
              LGRR WQSS  S     +T PE+GILWRA++Y    ELA+V D+ RG + YGYD EGRL
Sbjct  957   VLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL  1016

Query  1015  LQHRELKSGRVGGRLLYDAADN--LLGEQAPHDDPEQHPPPRPLGDNRLAHWRRLFYRYD  1072
                    SG+   +  YD ADN  +L  Q+P+  P  + +++P  DNRL++W +  Y+YD
Sbjct  1017  RSTVSPHSGQTTVH--YDRADNALMLPLQTPESSPYAR-SSQPYCDNRLTRWEQWQYHYD  1073

Query  1073  AWGNLVSRRHGVSEQHYTYDADNRLIRARGVGPQGEFSARYHYDALGRRTRKEVTYAGKS  1132
             A GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  + ++
Sbjct  1074  AFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQG  1132

Query  1133  AQTTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPEADIYWLNSDLNG  1192
              Q T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     E  +YW ++DLNG
Sbjct  1133  NQETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNG  1189

Query  1193  APLEVTDAEGNLRWSGQYDTFGRLLGQTVAGSAQRTGPV--YDQPLRYAGQYQDNESGLH  1250
             +P EVT+A+G++ WSGQY+ FG++  QT A   + + P+  + QPLRYAGQY D+E+GLH
Sbjct  1190  SPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLH  1249

Query  1251  YNLFRYYEPEVGRFTTQDPVGLAGGLNLYAYAPNPYGWVDPLGLT  1295
             Y  +RYY PEVGRF T DP+GLAGGLNLY YAPNP GW+DP GL+
Sbjct  1250  YTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

13) EAM_0799 in NC_013971


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  814 bits (3082),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/1318 (47%), Positives = 879/1318 (67%), Gaps = 20/1318 (1%)

Query  1     MSEAARVGDAIGHSSALAGMtggtivggliaaagavaagalfvaglaaSCLGVGVLLMGA  60
             +  AARVGDAIGHS ALAG+ GGTI+GGLI  AG++ +G LF AG A++CLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagadrrsasgQILTGSPNVFINGKPAAIATVSQAGCDRD  120
             S+AVG  +   +  ARD+   AG +  S+SG I+TGS+NV  N+K+AA+AT+S   CD+D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPTMQMAQGSARVFINGQPAARVGDKTNCGATVMAGSPSVRIGGGTATTLTIKPEVPDRA  180
               + Q+AQGS+ VFING PAAR  DKT C+A++M GS +V IGGGT TTL I +E+PD+A
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDLTllfagllggaggaagkagklaellSRLPGINRLGQVACRFGVLMTASAAAGII  240
             Y  SDLT++ AGL++ +G+ +  +G +  L+++LPG ++++++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESTLQPY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   ADGLVWRAPSGDLVSFPMVPRGHKTWCEAEKCWLMHNADDSWQLFDVSEQAWHYPPLDAQ  360
              DG++WR   GD ++FP +P GH+T C  ++CWL+H  D+ W + D +E   HY  +DAQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   YPARLSMVTDAGGNATSLFYDEQGRPGELVDSAGQRLSCRYLTTAGGHCRLSAVLLHTAD  420
               A L+ +TD  GN  S+ Y++Q +   + +++G  L C Y      + RL+AV  +T+D
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GEHTLVSYGYDDDGQLASVRNRAGEVTRRFTW--HDGLMASHEDANGLRNEYRWQEIDGL  478
             G+     Y Y++ GQLA+V++R + V RRF W  ++GL+  HE+  GLR +Y+WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHGAGEALALHYDINGGTRRAVRDDGMQACWQLDDDDSVAQFTDFDGRRLAFIY  538
               V+  +   G++  L YD +   R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPGGGQRHSEWDRYGRLLNETDPSGRKTTCQYARNSDRLVSVTHPDGSRE  597
              + G+  +   P G QR+ +WD  GRL++ TD++G  T  QY RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   CQSWDDRGRLITQSDALGNTTLYHYPDGEESLPARITDALGGVARLEWDGRGLLTRYTDC  657
              Q WD +GRL+ ++D LG++T Y YP+    LP  ITDALGG ++L W  +G LT YTDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYDYDIFGQLTGRTDAEGNVTRYRRDTAGRLQTLQHADGSEEHFVWNERGQLARH  717
             SG  T   YD +GQL  R DA  +  RY++D  GRL  +  +DGS E+F W+  GQL RH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPSGSETQWRYNLLGQPVSVTDRINRTRHYHYGPRGWLTRLENGNGGEYQFSYDAAGRI  777
             Q+      +W+Y++ GQ +S TDR++R  +Y+Y++ G+L +L+N+NGG+Y+F+ DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGADGQLAEHRETGPQNSLAPPAHRLHRFRFDEAGRLAWRGNDSAE  837
               E+RPD+T   Y Y ADGQ ++  + G  ++ A+P+++  R+ +D  GRL  R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLTRLVRTPTAAGAELGIEADSVELQYDKAGHLLCERGVNGAPVYSRDALG  897
               Y+ D  G L   +RTPT  G  LGI +++V ++ D  G++  E+    A  Y  DALG
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDRLQWLHYGSGHAGALKFNRQAVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D++QWLHYGSGH +A++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   SGRRSWQSSTFG--DGQITRPEDGMLWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
              GRR WQSS  +     +T PE+G+LWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLR  1017

Query  1016  QHRELQSGRTGSRLVYDAADN--LLGGqsphddperpppppqssnrlphWQRLFYRYDVW  1073
                  +SG+T  +  YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1018  STVSPHSGQTTVH--YDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGLNEQHYTYDADNRLIRARGSGPQGEFSAQYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F AQYHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPQADIYWLNTDLNGAP  1193
              T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     +  +YW +TDLNG+P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSP  1191

Query  1194  LEVTDADGRLRWSGQYDTFGRLQGQTTAG--AAQRTGPVYDQPLRYAGQYADSETGLHYN  1251
              EVT+A+G + WSGQY+ FG++  QT A      +    + QPLRYAGQY D ETGLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGLNLYAYAPNPYGWVDPLGLTKC-SPNKKTTYEGVS  1308
              +RYY P+VGRF T DP+GLAGGLNLY YAPNP GW+DP GL+   +     TY+G+ 
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGID  1309

14) EAMY_2782 in NC_013961


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  814 bits (3083),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 614/1318 (47%), Positives = 879/1318 (67%), Gaps = 20/1318 (1%)

Query  1     MSEAARVGDAIGHSSALAGMtggtivggliaaagavaagalfvaglaaSCLGVGVLLMGA  60
             +  AARVGDAIGHS ALAG+ GGTI+GGLI  AG++ +G LF AG A++CLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagadrrsasgQILTGSPNVFINGKPAAIATVSQAGCDRD  120
             S+AVG  +   +  ARD+   AG +  S+SG I+TGS+NV  N+K+AA+AT+S   CD+D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPTMQMAQGSARVFINGQPAARVGDKTNCGATVMAGSPSVRIGGGTATTLTIKPEVPDRA  180
               + Q+AQGS+ VFING PAAR  DKT C+A++M GS +V IGGGT TTL I +E+PD+A
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDLTllfagllggaggaagkagklaellSRLPGINRLGQVACRFGVLMTASAAAGII  240
             Y  SDLT++ AGL++ +G+ +  +G +  L+++LPG ++++++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESTLQPY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   ADGLVWRAPSGDLVSFPMVPRGHKTWCEAEKCWLMHNADDSWQLFDVSEQAWHYPPLDAQ  360
              DG++WR   GD ++FP +P GH+T C  ++CWL+H  D+ W + D +E   HY  +DAQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   YPARLSMVTDAGGNATSLFYDEQGRPGELVDSAGQRLSCRYLTTAGGHCRLSAVLLHTAD  420
               A L+ +TD  GN  S+ Y++Q +   + +++G  L C Y      + RL+AV  +T+D
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GEHTLVSYGYDDDGQLASVRNRAGEVTRRFTW--HDGLMASHEDANGLRNEYRWQEIDGL  478
             G+     Y Y++ GQLA+V++R + V RRF W  ++GL+  HE+  GLR +Y+WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHGAGEALALHYDINGGTRRAVRDDGMQACWQLDDDDSVAQFTDFDGRRLAFIY  538
               V+  +   G++  L YD +   R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPGGGQRHSEWDRYGRLLSETDPSGRKTTCQYARNSDRLVSVTHPDGSRE  597
              + G+  +   P G QR+ +WD  GRL+S TD++G  T  QY RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   CQSWDDRGRLITQSDALGNTTLYHYPDGEESLPARITDALGGVARLEWDGRGLLTRYTDC  657
              Q WD +GRL+ ++D LG++T Y YP+    LP  ITDALGG ++L W  +G LT YTDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYDYDIFGQLTGRTDAEGNVTRYRRDTAGRLQTLQHADGSEEHFVWNERGQLARH  717
             SG  T   YD +GQL  R DA  +  RY++D  GRL  +  +DGS E+F W+  GQL RH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPSGSETQWRYNLLGQPVSVTDRINRTRHYHYGPRGWLTRLENGNGGEYQFSYDAAGRI  777
             Q+      +W+Y++ GQ +S TDR++R  +Y+Y++ G+L +L+N+NGG+Y+F+ DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGADGQLAEHRETGPQNSLAPPAHRLHRFRFDEAGRLAWRGNDSAE  837
               E+RPD+T   Y Y ADGQ ++  + G  ++ A+P+++  R+ +D  GRL  R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLTRLVRTPTAAGAELGIEADSVELQYDKAGHLLCERGVNGAPVYSRDALG  897
               Y+ D  G L   +RTPT  G  LGI +++V ++ D  G++  E+    A  Y  DALG
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDRLQWLHYGSGHAGALKFNRQAVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D++QWLHYGSGH +A++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   SGRRSWQSSTFG--DGQITRPEDGMLWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
              GRR WQSS  +     +T PE+G+LWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLR  1017

Query  1016  QHRELQSGRTGSRLVYDAADN--LLGGqsphddperpppppqssnrlphWQRLFYRYDVW  1073
                  +SG+T  +  YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1018  STVSPHSGQTTVH--YDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGLNEQHYTYDADNRLIRARGSGPQGEFSAQYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F AQYHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPQADIYWLNTDLNGAP  1193
              T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     +  +YW +TDLNG+P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSP  1191

Query  1194  LEVTDADGRLRWSGQYDTFGRLQGQTTAG--AAQRTGPVYDQPLRYAGQYADSETGLHYN  1251
              EVT+A+G + WSGQY+ FG++  QT A      +    + QPLRYAGQY D ETGLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGLNLYAYAPNPYGWVDPLGLTKC-SPNKKTTYEGVS  1308
              +RYY P+VGRF T DP+GLAGGLNLY YAPNP GW+DP GL+   +     TY+G+ 
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGID  1309

15) EAM_2423 in NC_013971


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  808 bits (3060),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/1318 (47%), Positives = 878/1318 (67%), Gaps = 20/1318 (1%)

Query  1     MSEAARVGDAIGHSSALAGMtggtivggliaaagavaagalfvaglaaSCLGVGVLLMGA  60
             +  AARVGDAIGHS ALAG+ GGTI+GGLI  AG++ +G LF AG A++CLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagadrrsasgQILTGSPNVFINGKPAAIATVSQAGCDRD  120
             S+AVG  +   +  ARD+   AG +  S+SG I+TGS+NV  N+K+AA+AT+S   CD+D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPTMQMAQGSARVFINGQPAARVGDKTNCGATVMAGSPSVRIGGGTATTLTIKPEVPDRA  180
               + Q+AQGS+ VFING PAAR  DKT C+A++M GS +V IGGGT TTL I +E+PD+A
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDLTllfagllggaggaagkagklaellSRLPGINRLGQVACRFGVLMTASAAAGII  240
             Y  SDLT++ AGL++ +G+ +  +G +  L+++LPG ++++++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESTLQPY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   ADGLVWRAPSGDLVSFPMVPRGHKTWCEAEKCWLMHNADDSWQLFDVSEQAWHYPPLDAQ  360
              DG++WR   GD ++FP +P GH+T C  ++CWL+H  D+ W + D +E   HY  +DAQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   YPARLSMVTDAGGNATSLFYDEQGRPGELVDSAGQRLSCRYLTTAGGHCRLSAVLLHTAD  420
               A L+ +TD  GN  S+ Y++Q +   + +++G  L C Y      + RL+AV  +T+D
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHP---ERHRLTAVWQQTPD  417

Query  421   GEHTLVSYGYDDDGQLASVRNRAGEVTRRFTW--HDGLMASHEDANGLRNEYRWQEIDGL  478
             G+     Y Y++ GQLA+V++R + V RRF W  ++GL+  HE+  GLR +Y+WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHGAGEALALHYDINGGTRRAVRDDGMQACWQLDDDDSVAQFTDFDGRRLAFIY  538
               V+  +   G++  L YD +   R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPGGGQRHSEWDRYGRLLNETDPSGRKTTCQYARNSDRLVSVTHPDGSRE  597
              + G+  +   P G QR+ +WD  GRL++ TD++G  T  QY RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   CQSWDDRGRLITQSDALGNTTLYHYPDGEESLPARITDALGGVARLEWDGRGLLTRYTDC  657
              Q WD +GRL+ ++D LG++T Y YP+    LP  ITDALGG ++L W  +G LT YTDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYDYDIFGQLTGRTDAEGNVTRYRRDTAGRLQTLQHADGSEEHFVWNERGQLARH  717
             SG  T   YD +GQL  R DA  +  RY++D  GRL  +  +DGS E+F W+  GQL RH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPSGSETQWRYNLLGQPVSVTDRINRTRHYHYGPRGWLTRLENGNGGEYQFSYDAAGRI  777
             Q+      +W+Y++ GQ +S TDR++R  +Y+Y++ G+L +L+N+NGG+Y+F+ DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGADGQLAEHRETGPQNSLAPPAHRLHRFRFDEAGRLAWRGNDSAE  837
               E+RPD+T   Y Y ADGQ ++  + G  ++ A+P+++  R+ +D  GRL  R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLTRLVRTPTAAGAELGIEADSVELQYDKAGHLLCERGVNGAPVYSRDALG  897
               Y+ D  G L   +RTPT  G  LGI +++V ++ D  G++  E+    A  Y  DALG
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDRLQWLHYGSGHAGALKFNRQAVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D++QWLHYGSGH +A++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   SGRRSWQSSTFG--DGQITRPEDGMLWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
              GRR WQSS  +     +T PE+G+LWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLR  1017

Query  1016  QHRELQSGRTGSRLVYDAADN--LLGGqsphddperpppppqssnrlphWQRLFYRYDVW  1073
                  +SG+T  +  YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1018  STVSPHSGQTTVH--YDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGLNEQHYTYDADNRLIRARGSGPQGEFSAQYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F AQYHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPQADIYWLNTDLNGAP  1193
              T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     +  +YW +TDLNG+P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSP  1191

Query  1194  LEVTDADGRLRWSGQYDTFGRLQGQTTAG--AAQRTGPVYDQPLRYAGQYADSETGLHYN  1251
              EVT+A+G + WSGQY+ FG++  QT A      +    + QPLRYAGQY D ETGLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGLNLYAYAPNPYGWVDPLGLAKCGNNEKS-SYKGPE  1308
              +RYY P+VGRF T DP+GLAGGLNLY YAPNP GW+DP GLA         +Y+G +
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGID  1309

16) EAMY_2522 in NC_013961


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  808 bits (3059),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 609/1303 (47%), Positives = 873/1303 (67%), Gaps = 19/1303 (1%)

Query  1     MSEAARVGDAIGHSSALAGMtggtivggliaaagavaagalfvaglaaSCLGVGVLLMGA  60
             +  AARVGDAIGHS ALAG+ GGTI+GGLI  AG++ +G LF AG A++CLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagadrrsasgQILTGSPNVFINGKPAAIATVSQAGCDRD  120
             S+AVG  +   +  ARD+   AG +  S+SG I+TGS+NV  N+K+AA+AT+S   CD+D
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPTMQMAQGSARVFINGQPAARVGDKTNCGATVMAGSPSVRIGGGTATTLTIKPEVPDRA  180
               + Q+AQGS+ VFING PAAR  DKT C+A++M GS +V IGGGT TTL I +E+PD+A
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDLTllfagllggaggaagkagklaellSRLPGINRLGQVACRFGVLMTASAAAGII  240
             Y  SDLT++ AGL++ +G+ +  +G +  L+++LPG ++++++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESTLQPY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES+L   
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   ADGLVWRAPSGDLVSFPMVPRGHKTWCEAEKCWLMHNADDSWQLFDVSEQAWHYPPLDAQ  360
              DG++WR   GD ++FP +P GH+T C  ++CWL+H  D+ W + D +E   HY  +DAQ
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   YPARLSMVTDAGGNATSLFYDEQGRPGELVDSAGQRLSCRYLTTAGGHCRLSAVLLHTAD  420
               A L+ +TD  GN  S+ Y++Q +   + +++G  L C Y      + RL+AV  +T+D
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GEHTLVSYGYDDDGQLASVRNRAGEVTRRFTW--HDGLMASHEDANGLRNEYRWQEIDGL  478
             G+     Y Y++ GQLA+V++R + V RRF W  ++GL+  HE+  GLR +Y+WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTAWRHGAGEALALHYDINGGTRRAVRDDGMQACWQLDDDDSVAQFTDFDGRRLAFIY  538
               V+  +   G++  L YD +   R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPGGGQRHSEWDRYGRLLSETDPSGRKTTCQYARNSDRLVSVTHPDGSRE  597
              + G+  +   P G QR+ +WD  GRL+S TD++G  T  QY RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   CQSWDDRGRLITQSDALGNTTLYHYPDGEESLPARITDALGGVARLEWDGRGLLTRYTDC  657
              Q WD +GRL+ ++D LG++T Y YP+    LP  ITDALGG ++L W  +G LT YTDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYDYDIFGQLTGRTDAEGNVTRYRRDTAGRLQTLQHADGSEEHFVWNERGQLARH  717
             SG  T   YD +GQL  R DA  +  RY++D  GRL  +  +DGS E+F W+  GQL RH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPSGSETQWRYNLLGQPVSVTDRINRTRHYHYGPRGWLTRLENGNGGEYQFSYDAAGRI  777
             Q+      +W+Y++ GQ +S TDR++R  +Y+Y++ G+L +L+N+NGG+Y+F+ DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGADGQLAEHRETGPQNSLAPPAHRLHRFRFDEAGRLAWRGNDSAE  837
               E+RPD+T   Y Y ADGQ ++  + G  ++ A+P+++  R+ +D  GRL  R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLTRLVRTPTAAGAELGIEADSVELQYDKAGHLLCERGVNGAPVYSRDALG  897
               Y+ D  G L   +RTPT  G  LGI +++V ++ D  G++  E+    A  Y  DALG
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDRLQWLHYGSGHAGALKFNRQAVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D++QWLHYGSGH +A++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   SGRRSWQSSTFG--DGQITRPEDGMLWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
              GRR WQSS  +     +T PE+G+LWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLR  1017

Query  1016  QHRELQSGRTGSRLVYDAADN--LLGGqsphddperpppppqssnrlphWQRLFYRYDVW  1073
                  +SG+T  +  YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1018  STVSPHSGQTTVH--YDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGLNEQHYTYDADNRLIRARGSGPQGEFSAHYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRANGTRRTWSYDPESPWTPLAAIEQAGEGPQADIYWLNTDLNSAP  1193
              T+FLWQG RLLQ  R++ +++T  YDP+ + TPLA IE+     +  +YW +TDLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSP  1191

Query  1194  LEVTDADGRLRWSGQYDTFGRLQGQTTAG--AAQRTGPVYDQPLRYAGQYADSETGLHYN  1251
              EVT+A+G + WSGQY+ FG++  QT A      +    + QPLRYAGQY D ETGLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGLNLYAYAPNPYGWVDPLGLS  1294
              +RYY P+VGRF T DP+GLAGGLNLY YAPNP GW+DP GL+
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

17) EpC_31430 in NC_012214


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  800 bits (3027),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/1303 (47%), Positives = 869/1303 (67%), Gaps = 19/1303 (1%)

Query  1     MSEAARVGDATGHSSALAGMiggtivggliaaagavaagalfvaglasaCLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+IGGTI+GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPNVHIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS NV IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   YKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
             Y  SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLHMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GECTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHEDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  HE+  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVY  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPDGSRE  597
              + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   SRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITDASGGVVQLEWNGRGLLTRHTDC  657
              + WD QGRL+++TD   ++T Y YP+    LP  ITDA GG  QL W+ +G LT  TDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYGYDVFGQLTDRTDAEGNVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQLVRH  717
             SG  T   YD +GQL  R DA  +  RY++D+ GRL  +  +DGS E+F W+  GQLVRH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYHFSHDAAGRI  777
             Q+      HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+YHF++DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGNDSAE  837
               E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLSRLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQWDALT  897
               Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ DAL 
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   LGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
             LGRR WQSS  S     +T PE+GILWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL-  1016

Query  1016  QHRELKSGRVGNRLLYDAADN--LLGGqsphddpeqppppplssnrlphWQRLFYRYDVW  1073
              +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1017  -RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGVNEQHYTYDADNRLIRARGFGPQGEFSARYHYDALGRRSRKEVTFAAKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  ++++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADLNSAP  1193
              T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDLNGSP  1191

Query  1194  LEVTDAEGNLRWSGHYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESGLHYN  1251
              EVT+A+G++ WSG+Y+ FG++  QT A      +    + QPLRYAGQY D+E+GLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGMNLYAYAPNPYGWVDPLGLS  1294
              +RYY P+VGRF T DP+GLAGG+NLY YAPNP GW+DP GL+
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

18) EpC_11140 in NC_012214


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  798 bits (3019),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 604/1307 (47%), Positives = 867/1307 (67%), Gaps = 27/1307 (2%)

Query  1     MSEAARVGDATGHSSALAGMtggtivggliaaagavaagalfvaglaSACLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+ GGTI+GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVLINGKPAAIATVSQAGCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPSVRIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS +V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   CKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
                SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLNMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GERTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHQDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  H++  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVC  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD    R A  C
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTD----RTAHEC  533

Query  539   -----ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPD  593
                  + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PD
Sbjct  534   QLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPD  593

Query  594   GSRESRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITDASGGVVQLEWNGRGLLTR  653
             G++E + WD QGRL+++TD   ++T Y YP+    LP  ITDA GG  QL W+ +G LT 
Sbjct  594   GTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTG  653

Query  654   HTDCSGSVTAYGYDVFGQLTDRTDAEGNVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQ  713
              TDCSG  T   YD +GQL  R DA  +  RY++D+ GRL  +  +DGS E+F W+  GQ
Sbjct  654   YTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQ  713

Query  714   LVRHQDPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYQFSHDA  773
             LVRHQ+      HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+Y+F++DA
Sbjct  714   LVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDA  773

Query  774   AGRITAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGN  833
              GR+  E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R  
Sbjct  774   EGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHT  833

Query  834   DSAEWQYHYDAAGRLSLLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQW  893
              + +  Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ 
Sbjct  834   LTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHY  893

Query  894   DALANLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQR  953
             DAL+NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR
Sbjct  894   DALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQR  953

Query  954   RYDALGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGISDALRGEVHYGYDAE  1011
             +YD LGRR WQSS  S     +T PE+GILWRA++Y    ELA++ D+ RG + YGYD E
Sbjct  954   QYDVLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEE  1013

Query  1012  GRLLQHRELKSGRVGNRLLYDAADN--LLGGqsphddpaqppppplssnrlphWQRLFYR  1069
             GRL  +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+
Sbjct  1014  GRL--RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYH  1071

Query  1070  YDVWGNLVSRRHGVNEQHYTYDADNRLIHARGFGPQGEFSARYHYDALGRRSRKEVTFAA  1129
             YD  GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  ++
Sbjct  1072  YDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TP  1130

Query  1130  KAPQTTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADL  1189
             ++ Q T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DL
Sbjct  1131  QGNQETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDL  1187

Query  1190  NSAPLEVTDAGGNLRWSGQYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESG  1247
             N++P EVT+A G++ WSGQY+ FG++  QT A      +    + QPLRYAGQY D+E+G
Sbjct  1188  NGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETG  1247

Query  1248  LHYNLFRFYEPDVGRFTTQDPVGLAGGMNLYAYAPNPYGWVDPLGLS  1294
             LHY  +R+Y P+VGRF T DP+GLAGG+NLY YAPNP GW+DP GL+
Sbjct  1248  LHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

19) EPYR_00900 in NC_017390


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 603/1323 (46%), Positives = 866/1323 (66%), Gaps = 27/1323 (2%)

Query  1     MSEAARVGDATGHSSALAGMiggtivggliaaagavaagalfvaglasaCLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+IGGTI+GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPXVHIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS  V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   XKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
                SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQXFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQ FL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLHMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GEXTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHQDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  H++  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVY  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPDGSRE  597
              + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   SRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITXASGGVVQLEWNGRGLLTRHTDC  657
              + WD QGRL+++TD   ++T Y YP+    LP  IT A GG  QL W+ +G LT  TDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYGYDVFGQLTDRTDAEGSVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQLVRH  717
             SG  T   YD +GQL  R DA     RY++D+ GRL  +  +DGS E+F W+  GQLVRH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QXPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYXFSHDAAGRI  777
             Q       HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+Y F++DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGNDSAE  837
               E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLSXLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQWDALX  897
               Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ DAL 
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   LGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGXSDALRGEVHYGYDAEGRLL  1015
             LGRR WQSS  S     +T PE+GILWRA++Y    ELA+  D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL-  1016

Query  1016  QHRELKSGRVGNRLLYDAADN--LLGGQSphddpxqpppppLSSNRLPHWQRLFYRYDVW  1073
              +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1017  -RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGVNEQHYTYDADNRLIXARGFGPQGEFSARYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADLNSAP  1193
              T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDLNGSP  1191

Query  1194  LEVTDAEGNLRWSGXYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESGLHYN  1251
              EVT+A+G++ WSG Y+ FG++  QT A      +    + QPLRYAGQY D+E+GLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRFYEPDVGRFTTQDPISIRGGLNLYAYAPNPYGWVDPLGLSNFFIPSVFNAPSGSTHT  1311
              +R+Y P+VGRF T DPI++ GGLNLY YAPNP GW+DP GL+         +P+ +TH 
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA--------GSPTTATHI  1303

Query  1312  VYQ  1314
              YQ
Sbjct  1304  TYQ  1306

20) EpC_08510 in NC_012214


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  794 bits (3004),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 606/1323 (46%), Positives = 874/1323 (67%), Gaps = 27/1323 (2%)

Query  1     MSEAARVGDATGHSSALAGMiggtivggliaaagavaagalfvaglasaCLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+IGGTI+GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPSVHIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS +V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   CKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
                SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQKFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQKFL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLHMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GERTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHQDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  H++  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVY  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPDGSRE  597
              + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   SRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITDASGGVVQLEWNGRGLLTRHTDC  657
              + WD QGRL+++TD   ++T Y YP+    LP  ITDA GG  QL W+ +G LT  TDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYGYDVFGQLTDRTDAEGSVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQLVRH  717
             SG  T   YD +GQL  R DA     RY++D+ GRL  +  +DGS E+F W+  GQLVRH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYQFSHDAAGRI  777
             Q+      HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+Y+F++DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGNDSAE  837
               E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLSLLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQWDALA  897
               Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ DAL+
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   LGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGISDALRGEVHYGYDAEGRLL  1015
             LGRR WQSS  S     +T PE+GILWRA++Y    ELA++ D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL-  1016

Query  1016  QHRELKSGRVGNRLLYDAADN--LLGGqsphddpaqppppplssnrlphWQRLFYRYDVW  1073
              +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1017  -RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGVNEQHYTYDADNRLIHARGFGPQGEFSARYHYDALGRRSRKEVTFAGKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  + ++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADLNSAP  1193
              T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDLNGSP  1191

Query  1194  LEVTDAEGNLRWSGQYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESGLHYN  1251
              EVT+A+G++ WSGQY+ FG++  QT A      +    + QPLRYAGQY D+E+GLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRFYEPDVGRFTTQDPISIRGGLNLYAYAPNPYGWVDPLGLSNFFIPSVFNAPSGSTHT  1311
              +R+Y P+VGRF T DPI++ GGLNLY YAPNP GW+DP GL+         +P+ +TH 
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA--------GSPTTATHI  1303

Query  1312  VYQ  1314
              YQ
Sbjct  1304  TYQ  1306

21) EPYR_03396 in NC_017390


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  792 bits (2996),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 604/1303 (47%), Positives = 866/1303 (67%), Gaps = 19/1303 (1%)

Query  1     MSEAARVGDATGHSSALAGMiggtivggliaaagavaagalfvaglasaCLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+IGGTI+GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVFINGKPAAIATVSQAGCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N+K+AA+AT+S   CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPNVHIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS NV IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   XKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
                SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQXFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQ FL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLHMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GECTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHEDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  HE+  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVY  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPDGSRE  597
              + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   SRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITXASGGVVQLEWNGRGLLTRHTDC  657
              + WD QGRL+++TD   ++T Y YP+    LP  IT A GG  QL W+ +G LT  TDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYGYDVFGQLTDRTDAEGNVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQLVRH  717
             SG  T   YD +GQL  R DA  +  RY++D+ GRL  +  +DGS E+F W+  GQLVRH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QDPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYHFSHDAAGRI  777
             Q+      HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+YHF++DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGNDSAE  837
               E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLSRLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQWDALX  897
               Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ DAL 
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   LGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGVSDALRGEVHYGYDAEGRLL  1015
             LGRR WQSS  S     +T PE+GILWRA++Y    ELA+V D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL-  1016

Query  1016  QHRELKSGRVGNRLLYDAADN--LLGGqsphddpeqppppplssnrlphWQRLFYRYDVW  1073
              +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1017  -RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGVNEQHYTYDADNRLIRARGFGPQGEFSARYHYDALGRRSRKEVTFAAKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  ++++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADLNSAP  1193
              T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDLNGSP  1191

Query  1194  LEVTDAEGNLRWSGHYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESGLHYN  1251
              EVT+A+G++ WSG+Y+ FG++  QT A      +    + QPLRYAGQY D+E+GLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRYYEPDVGRFTTQDPVGLAGGMNLYAYAPNPYGWVDPLGLS  1294
              +RYY P+VGRF T DP+GLAGG+NLY YAPNP GW+DP GL+
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

22) EPYR_01181 in NC_017390


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  783 bits (2963),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 587/1303 (46%), Positives = 845/1303 (65%), Gaps = 19/1303 (1%)

Query  1     MSEAARVGDATGHSSALAGMXXXXXvggliaaagavaagalfvaglasaCLGVGVLLMGA  60
             +  AARVGDA GHS ALAG+     +GGLI  AG++ +G LF AG ASACLGVG+LL+GA
Sbjct  2     LEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGA  61

Query  61    SLAVGYLTGEaataardgmaaagaaslsasgQILTGSPDVFINXXXXXXXXXXXXXCDKD  120
             S+AVG  +   +  ARD+   AG  SLS+SG I+TGS++V  N             CDKD
Sbjct  62    SIAVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD  121

Query  121   GPSMQMAQGSDRVFINGQPASRVGDKTNCGATVMAGSPSVHIGGGTATTLAIKPEVPEWA  180
               + Q+AQGS  VFING PA+R  DKT C+A++M GS +V IGGGT TTL+I +E+P+WA
Sbjct  122   -KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWA  180

Query  181   XKASDltllftgllggaggaagkagrlgkllSRLPGISKLAQVACRFGTLMTASAAAGII  240
                SDLT++ +GL++ +G+ +  +G + KL+++LPG  K+A++ACR++ L    +  GI+
Sbjct  181   YTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGIL  240

Query  241   ARPVDIISGQXFLSGDDELDFVLPSRLPVEWQRYWRSGNPAESVLGRGWSLFWESRLQHY  300
             + PVD+ SGQ FL+++DE DF L + LP+ WQR   S+   E+VLGRGW+LFWES L + 
Sbjct  241   TNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRV  300

Query  301   DDGLVWRAPSGDFVPFPMVPRGRKSWCEAEKCWLMHNADGSWQVSDVSEQVWHYPPPEGK  360
             DDG++WR   GD++PFP +P G+++ C  ++CWL+H  DG W + D +E V HY   +++
Sbjct  301   DDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQ  360

Query  361   HPARLHMLTDAGGNATSLFYDEQGRLSELVDSAGQRLSCRYLTRAAGHDRLSAVLLHTPD  420
               A L  +TD  GN  S+ Y++Q ++  + +++G  L C Y    + ++RL+AV  +TPD
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDY---HPERHRLTAVWQQTPD  417

Query  421   GEXTLVSYDYDDEGQLVTVRNRAGEVTRRFSWRD--GLMASHQDANGLLNEYLWQEIDGL  478
             G+     Y+Y++ GQL +V++R + V RRF+W +  GL+  H++  GL  +Y WQEID++
Sbjct  418   GDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDI  477

Query  479   PRVTGWRHSAGEELALHYDFSGGTRRAVRDDGMQAWWQLDDDDSVAQFTDFDGRRLAFVY  538
               V+  +   G+   L YD     R A  +DG QA W LD+++ V+++TD  ++   +  
Sbjct  478   WCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQW  537

Query  539   -ARGELCSVLLPDGGQRQSEWDRYGRLLSETDPTGRKTLYQYQRNSDRLVCVTHPDGSRE  597
              + G+  +   P G QRQ +WD  GRL+S TD+ G  T  QY+RN+DR   V  PDG++E
Sbjct  538   DTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQE  597

Query  598   SRSWDRQGRLIKQTDAAENTTLYHYPDEEESLPARITXASGGVVQLEWNGRGLLTRHTDC  657
              + WD QGRL+++TD   ++T Y YP+    LP  IT A GG  QL W+ +G LT  TDC
Sbjct  598   RQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDC  657

Query  658   SGSVTAYGYDVFGQLTDRTDAEGNVTRYRRDAAGRLHTLHHADGSEEHFTWNERGQLVRH  717
             SG  T   YD +GQL  R DA  +  RY++D+ GRL  +  +DGS E+F W+  GQLVRH
Sbjct  658   SGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRH  717

Query  718   QXPPGSETHWRYNLLGQPVSITDRINRTRNWHYNPRGWLTRLENGNGGEYXFSHDAAGRI  777
             Q       HW+Y++ GQ +S TDR++R    +Y++ G+L +L+N+NGG+Y F++DA GR+
Sbjct  718   QQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRL  777

Query  778   TAERRPDNTDHLYRYGPDGQLAEHRETGPQNSLAPPAHRLHRFRFDGAGRPAWRGNDSAE  837
               E+RPD+T   Y Y +DGQ ++  + G  ++ A+P+++  R+ +D+ GR   R   + +
Sbjct  778   LEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQ  837

Query  838   WQYHYDAAGRLSXLTRTPTAAGAEAGIEADRIELQYDRAGNLLCERGVNGGLHYQWDALX  897
               Y+ D  G L    RTPT  G   GI ++ + ++ D  G +  E+    +L Y+ DAL 
Sbjct  838   TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALG  897

Query  898   NLQALTLPQGDSLQWLHYGSGHVSALKFNRQRVSEFTRDRLHRETGRSQGALHQQRRYDA  957
             NL  L LP++D +QWLHYGSGHVSA++FN Q VSEF RD LHRET R+QG L QQR+YD 
Sbjct  898   NLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDV  957

Query  958   LGRRSWQSSAFS--DGKITRPEDGILWRAFRYTGRGELAGXSDALRGEVHYGYDAEGRLL  1015
             LGRR WQSS  S     +T PE+GILWRA++Y    ELA+  D+ RG + YGYD EGRL 
Sbjct  958   LGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRL-  1016

Query  1016  QHRELKSGRVGNRLLYDAADN--LLGGQSphddpxqpppppLSSNRLPHWQRLFYRYDVW  1073
              +  + +      + YD ADN  +L  Q+P+  P   ++ P   NRL +W++  Y+YD  
Sbjct  1017  -RSTVSPHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAF  1075

Query  1074  GNLVSRRHGVNEQHYTYDADNRLIXARGFGPQGEFSARYHYDALGRRSRKEVTFAAKAPQ  1133
             GNL  R +G   Q+Y YD+DNRL+ A+G G +G F A+YHYDALGRR  K V  ++++ Q
Sbjct  1076  GNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR-TPQGNQ  1134

Query  1134  TTRFLWQGYRLLQEQRGNGTRRTWSYDPASPWTPLAAIEQAGDAEQADIYWLNADLNSAP  1193
              T+FLWQG RLLQ  R + +++T  YDP  + TPLA IE+     +  +YW ++DLN++P
Sbjct  1135  ETHFLWQGLRLLQS-RTDESQQTYCYDPNEAYTPLACIERR--YGEDTLYWYHTDLNGSP  1191

Query  1194  LEVTDAXXNLRWSGXYDTFGKLLGQTVAG--AAQRTGPVYDQPLRYAGQYQDNESGLHYN  1251
              EVT+A  ++ WSG Y+ FG++  QT A      +    + QPLRYAGQY D+E+GLHY 
Sbjct  1192  QEVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYT  1251

Query  1252  LFRFYEPDVGRFTTQDPVGLAGGMNLYAYAPNPYGWVDPLGLS  1294
              +R+Y P+VGRF T DP+GLAGG+NLY YAPNP GW+DP GL+
Sbjct  1252  TYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

23) EbC_38070 in NC_014306


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  781 bits (2954),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 572/1332 (43%), Positives = 847/1332 (64%), Gaps = 66/1332 (4%)

Query  1     MLEAA-RVGDDIGHSHALAGM-----------IAGTVVGGLL----CAMGGIAAGALMVa  44
             MLEAA RVGD IGHS+ALAG+           +AG ++GG+L    CA + ++ G L+++
Sbjct  1     MLEAAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIG  60

Query  45    glassylgvglllvgaslavgyaTGELataardgiaaagaagmsangKILTGSHNVFING  104
             +  +  ++               +  L+  ARD+   AG  ++S++G I+TGS NV  N+
Sbjct  61    ASIAVGMA---------------ANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNS  105

Query  105   KPAAIATLSQAGCANDGPSMQVAQGSASVFINGFPAARIGDATNCDAKVLTGSSNVFIGG  164
             K+AA+ATLS   C +D  + QVAQGS+SVFING+PAAR  D T CDA ++ GS+NVFIGG
Sbjct  106   KAAAVATLSAVTCDKD-KAQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGG  164

Query  165   ARQTTLPITPEVADWMYKASDltllftglvggwggaagkvgalSKLLAKLPGINKLARIT  224
             + +TTLPIT+E++DW Y  SDLT++ +GL++  G+ +   GA+ KL+AKLPG +K+A+I+
Sbjct  165   GTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIA  224

Query  225   CRagalmtgaaaagiiaRPVDLISGQKFLDGDDELDFTLPSRLPVLWQRYWRSGNPAESV  284
             CR ++L    +  GI++ PVD+ SGQKFL+++DE DFTL + LP++WQR   S+   E+V
Sbjct  225   CRLAPLAIILPVVGILTNPVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGV  284

Query  285   LGRGWSLFWETRLARYQDGLVWRAPSGDYVSFPDVPKGRKTWCDSEKCWLEHHSDDSWSV  344
             LGRGW+LFWE+ L+R +DG++WR   GDY++FPD+P G++T C  ++CWL H  D+ W +
Sbjct  285   LGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCI  344

Query  345   FDVSGERLHYGSLDEAMPGLLTAMADLTGNTITFHYQHDGLLHELIDSAGQRVICRYDPA  404
              D +    HYG +D    + L+ ++D  GN  +FHY+++  +  + +++G  + C Y+P 
Sbjct  345   RDAGEWVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPE  404

Query  405   RKRLL---EARLDDAVTLVSYEYDDEGQLVRVKNRGGSVVRRFSW--HDGLMSSHEDANG  459
             R RL    +   D+ +    Y+Y++ GQL  V++R+++VVRRF+W  ++GL+  HE+  G
Sbjct  405   RHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAG  464

Query  460   LLNEYLWREIAGLPRVVAYRNSAGERLDFSYDFENGTRRAVREDGCTAHWVCEDDDSVAA  519
             L  +Y W+EI ++  V   +   G+   ++YD E   R A  +DG  A W+ ++++ V+ 
Sbjct  465   LRCDYQWQEIDDIWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSR  524

Query  520   FTDWDGRRYSFIYQK-GELCCVLLPGGAQRSCQWDRHGRLLSEKDELGRRTEYRWSRLST  578
             +TD+ ++   +  +  G+      P G QR CQWD  GRL+S  D  G  T  +  R + 
Sbjct  525   YTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTD  584

Query  579   NLVEIAWPDGVRERSDFDPAGRLIAETDAAGNITRWHYPDAEESLPDRITDASGGEVSLQ  638
                 + WPDG +ER + D+ GRL+ ETD  G+ T+  YP++   LPD ITDA GG+  L 
Sbjct  585   RQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLL  644

Query  639   WNHQGLLTQRTDCSGSITRWQYDSFGQPKAMIDAQGNITRWHWLAVGQLSEVEHPDGTTE  698
             W++QG LT  TDCSG  T+W+YD++GQ     DA  +  R HW +VG+L+ V  PDG+TE
Sbjct  645   WSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTE  704

Query  699   RFSWNERNQLAAWHDPLESLTRWQYNALGQPLSQTDRLNRTRRWHYDVRGRLTELDNGNG  758
             +F W+   QL   ++  +   +W+Y+  GQ LS TDRL+R  R +YD  GRL +LDN+NG
Sbjct  705   QFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNG  764

Query  759   GRYRFEHDPTGRLTREVRPDETSRQFDYDEAGYLATVAETAREAADGGIARRSQMFRHDA  818
             G+Y+F++D+ GRL  E RPD+T   + Y+  G  + +++ +    +++ + ++  +  DA
Sbjct  765   GQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDA  824

Query  819   AGQLLWRANISAEWDYCY--DLRGRLTRLQRTPTESGRALGIEEDSLQFSYNALGQLEEE  876
              G+L+ R  ++ +   CY  D  G L    RTPTE G  LGI  +++ F  +ALG++ +E
Sbjct  825   VGRLIARHTLTEQ--TCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQE  882

Query  877   SGVNGTLRYTRDAQGNLTHLALPGDDELRWLHYGSGHVSAIGFNRQTVSEFTRDSLHREV  936
                  +L Y  DA GNLT+L LP DD+++WLHYGSGHVSAI FN Q VSEF RD+LHRE 
Sbjct  883   HNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRET  942

Query  937   SRTQGTRLQTRSYDALGRR---TQQQSQLSGEFVSPQSTLLARAFRYTARGELAGVSDTL  993
              RTQG   Q R YD LGRR   +   S+L+  + +P+  +L RA++Y    ELA+V D+ 
Sbjct  943   RRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSN  1002

Query  994   RGDIHYGYDAEGRLLSHAESRSRRAANELRYDNADNLLAEGNGPLPDNWGGWNDDPVYGQ  1053
             RG + YGYD EGRL  ++   ++ +   ++YD ADN L     PL        + + Y  
Sbjct  1003  RGMLSYGYDEEGRL--RSTVSPHSGQTTVHYDRADNALML---PLQT-----PESSPY--  1050

Query  1054  RQSHGSQDTDAIADNRLSVWRNLFYKYDGWGNLISRRNGADEQHYRYDADNRLIKASGTG  1113
                  ++ +++  DNRL+ W +  Y YD+ GNL  R +G   Q+YRYD+DNRL+ A G G
Sbjct  1051  -----ARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGDG  1105

Query  1114  PEGRFEAHYHYDALGRRTCKAVRLHDKTVATRFLWQGYRLLQEQKQNGARQTYLYDPNDI  1173
               G FEA+YHYDALGRR  K VR  +    T+FLWQG RLLQ  + + ++QTY YDPN+ 
Sbjct  1106  QKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLRLLQS-RTDESQQTYCYDPNEA  1164

Query  1174  WSPLARLDQPVAGTAADIFWFNTDLNGAPLEVTDEEGHLRWAGHYGTFGEVKYQTTRSF-  1232
              +PLA +++  +  +  ++W++TDLNG+P EVT+ +G++ W+G+YG FG+V  QT     
Sbjct  1165  YTPLACIERRYGEDT--LYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMWR  1222

Query  1233  DVRQDRSLTEQPLRYAGQYADKETGLHYNLFRYYDPGVGRFTVQDPIGLAGGDNLYAYAP  1292
             +V +  +   QPLRYAGQY D ETGLHY  +RYY P VGRF   DPIGLAGG NLY YAP
Sbjct  1223  NVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYAP  1282

Query  1293  NPLSWIDPLGLT  1304
             NPL+WIDP GL+
Sbjct  1283  NPLGWIDPWGLA  1294

24) ECL_03140 in NC_014121


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  772 bits (2920),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/1254 (44%), Positives = 810/1254 (65%), Gaps = 36/1254 (2%)

Query  68    TGELATAARDSIADAGASSMTKKGVITSGSPNVFINSKPAAIATDSAVKCSDDGSQQMAE  127
             +  L+  ARD+  DAG +S++  G I +GS+NV  NSK+AA+AT SAV C  D +QQ+A+
Sbjct  69    ANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQ  128

Query  128   GSKRVSINSQPASRIGDRTTCDAKVMTGSDNVFIGGDPQQTLPIQSEVPEWLYKVSDltl  187
             GS  V IN+ PA+R  D+TTCDA +M GS NVFIGG+ + TLPI SE+P+W Y VSDLT+
Sbjct  129   GSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTM  188

Query  188   lfagllggwggaagkvgalSKLLGKIPGINKLARIACRAGTLMTGVAAAGIIARPVDIVS  247
             + AGL++  G+ +   GA+ KL++K+PG +K+A+IACR + L   ++  GI++ PVD+ S
Sbjct  189   FAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTS  248

Query  248   GQKFLSGDDELDFVLPSRLPVRWQRYWRSGNPGDSVLGRGWSLFWESRLEPYQDGLVWRA  307
             GQKFL+++DE DF L + LP+ WQR   S+   ++VLGRGW+LFWES L   +DG++WR 
Sbjct  249   GQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRN  308

Query  308   PSGDYVAFPNVPKGMRTYCESEKNWLEHHHDDSWSVYDVSGERW--HYAALKDDAPSLLQ  365
               GDY++FP++P G +T+C  ++ WL H +D+ W + D +   W  HY+ +  ++ + L 
Sbjct  309   TYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLA  366

Query  366   RISEPCGNDILFEWNADNTLHALTDSAGQRVVCRY--DRDRLASAWL---DDEICLVSYA  420
              I++  GN   F+ N ++ + ++T+++G  + C Y  +R+RL++ W    D++I    Y 
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  421   YDEQRQLVCVTGRGGSVRRRFRW--QDGLMSAHEDANGLLSEYRWREIDGLPRVVGFRHS  478
             Y+E  QL  V  R+++V RRF W  ++GL+  HE+  GL  +Y+W+EID++  V   +  
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTC  486

Query  479   GGEQLTFEYDFENGIRRANRDDGAQANWLIDDDDNVARFTDYDGRQTTFVY-RDGELSDV  537
              G+   + YD E   R A  +DG+QA W++D+++ V+R+TD  +++  +     G+ ++ 
Sbjct  487   EGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGY  546

Query  538   ILPGGAMRCSTWDKYGRMTSETDPAGRCTEYYW-Y-RLTDRITRTVYPDGTSSQAMYDLR  595
               P G  R   WD  GR+ S TD+ G  +E  W Y R TDR T    PDGT  +   D +
Sbjct  547   RSPRGHQRQCQWDELGRLVSVTDANG--AETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  596   GRLLSETDPAGNATAYHYPDEEENLPESITDALGGVVRLVWNIQGLLTQRTDCSGSVTRF  655
             GRLL ETD  G++T Y YP+    LP+SITDALGG  +L+W+ QG LT  TDCSG  T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  656   SYDRFGQLIASEDAEGNITRREWNNAGLLSAVIHPDGSRESLVWNERGQLTGWRDPLESE  715
              YD +GQL+   DA  +  R +W+  G L+ V  PDGS E + W+  GQL   ++  +  
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  716   VSWAYNALGLPVSLTDRIGRVRQWRYDPRGNLLRLDNGNGAEYRFTYDAVGRPLSETRPD  775
               W Y+  G  +S TDR++RV + RYD+ G L++LDN+NG++Y+F  DA GR L E RPD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  776   ETVRHMEWDARGFLCALEENGRPAADGGIARRVQQFSYDDSGLLIGRTQRHAEYRYVRDL  835
             +T      +A G    + + G +  +++ + +  +++YD  G LI+R     +  Y +D 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  836   SGQITRIRRTPTAEGVALGIESDEIAYRHDAAGRVLSESGINGAVGYEWDALSNLTGLTL  895
              G++    RTPT +G  LGI ++ +++ +DA GR+  E     A++Y+ DAL+NLT L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  896   PGEQKLAWLHYGSGHVSAIRFGQQLVTEFTRDRLHREIRRTQGAREQLRQYDSLGRRTLQ  955
             P ++ + WLHYGSGHVSAIRF +QLV+EF RD LHRE RRTQG   Q RQYD LGRR  Q
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  956   ---RSELSTEVTLPEQAILERLYRYTARGELSGVSDTLRGEVDYGYDAEGRLLKHYEARQ  1012
                 S L+  +T PEQ+IL R Y+Y    EL++V D+ RG + YGYD EGRL     ++ 
Sbjct  965   SSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHS  1024

Query  1013  GHSRAQF---------SYdaadnlaanddaVPVTDNRLQHWQALFMKYDHWGNLVSRRNG  1063
             G++  ++         + +++++ +    + P  DNRL +W+     YD  GNL  R +G
Sbjct  1025  GQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEG  1084

Query  1064  LYEQHYAYDAENRLVSARGTGPEGRFEARYHYDALGRRTRKIVTTAHGTTETRFLWQGYR  1123
                Q+Y YD++NRLV+A+G G  G FEA+YHYDALGRR  K+V T++G  ET+FLWQG R
Sbjct  1085  YRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLR  1144

Query  1124  LLQEQQQTGLCSTYIYDPNEAWSPLARVDHLRDQSSGEIYWFNTDLNGAPLEVTDERGAV  1183
             LLQ + + +   TY YDPNEA +PLA ++  R  + + +YW++TDLNG+P EVT+ +G +
Sbjct  1145  LLQSRTDESQ-QTYCYDPNEAYTPLACIE--RRYGEDTLYWYHTDLNGSPQEVTNAQGEM  1201

Query  1184  RWSGQYGSFGEVRHQSEGFSRVVNRT-AMAHQPLRYAGQYADGETGLHYNLFRYYDPQVG  1242
              WSGQYG FG+V +Q+++  R V++  +  +QPLRYAGQY D+ETGLHY  +RYY P+VG
Sbjct  1202  VWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVG  1261

Query  1243  RFIVQDPIGLNGGWNLYQYAPNPLGWIDPWGL----SAQGLVRYKPDPSLSAQP  1292
             RFI  DPIGL GG NLYQYAPNPLGWIDPWGL    ++   + Y+   +++++P
Sbjct  1262  RFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGIDAITGKP  1315

25) ECENHK_05765 in NC_018405


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  765 bits (2895),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 542/1249 (44%), Positives = 803/1249 (65%), Gaps = 28/1249 (2%)

Query  68    TGELATAARDSIADAGASSMTKKGVITSGSPNVFINGKPAALATDSTVDCSDDGSQQMAE  127
             +  L+  ARD+  DAG +S++  G I +GS+NV  N+K+AA+AT S+V C  D +QQ+A+
Sbjct  69    ANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQ  128

Query  128   GSKRVFINSQPASRIGDRTTCDAKVMTGSDNVIIGGDPQQTLPIQSEVPEWLYKVSDltl  187
             GS  VFIN+ PA+R  D+TTCDA +M GS NV+IGG+ + TLPI SE+P+W Y VSDLT+
Sbjct  129   GSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTM  188

Query  188   lfagllggwggaagkvgalSKLLGKIPGINKLARIACRAGTLMTGVAAAGIIARPVDIVS  247
             + AGL++  G+ +   GA+ KL++K+PG +K+A+IACR + L   ++  GI++ PVD+ S
Sbjct  189   FAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTS  248

Query  248   GQKFLSGDDELDFVLPSRLPVRWQRYWRSGNPGDSVLGRGWSLFWESRLEPYQDGLVWRA  307
             GQKFL+++DE DF L + LP+ WQR   S+   ++VLGRGW+LFWES L   +DG++WR 
Sbjct  249   GQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRN  308

Query  308   PSGDYIAFPNVPKGMRTYCESEKNWLEHHSDDSWSVYDVSGERW--HYAPLKDDAPSLLQ  365
               GDYI+FP++P G +T+C  ++ WL H  D+ W + D +   W  HY+ +  ++ + L 
Sbjct  309   TYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLA  366

Query  366   RISEPCGNAILFEWNANNTLHALTDSAGQRVVCRYDSDR--LAGAWL---DDEICLVSYA  420
              I++  GN   F+ N ++ + ++T+++G  + C Y+++R  L++ W    D++I    Y 
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  421   YDEQRQLVCVTGRGGSVRRRFRW--QDGLMSAHEDANGLLSEYRWQEIDGLPRVVGFRHS  478
             Y+E  QL  V  R+++V RRF W  ++GL+  HE+  GL  +Y+WQEID++  V   +  
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTC  486

Query  479   GGEQLTFEYDFDNGTRRATRDDGAQAHWLVDDDDNVARFTDYDGRQTTFVY-RDGELCDV  537
              G+   + YD +   R AT +DG+QA W++D+++ V+R+TD  +++  +     G+  + 
Sbjct  487   EGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGY  546

Query  538   ILPGGAMRRSTWDKYGRMTSETDPAGRRTEYHWYRLTDRITRTVYPDGTSSQAMYDLRGR  597
               P G  R+  WD  GR+ S TD+ G  T  +  R TDR T    PDGT  +   D +GR
Sbjct  547   RSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGR  606

Query  598   LLSETDPAGNATAYDYPDDQENLPESITDAIGGVVRLVWNHQGLLTQRTDCSGSVTRFTY  657
             LL ETD  G++T Y YP+ +  LP+SITDA+GG  +L+W++QG LT  TDCSG  T+  Y
Sbjct  607   LLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRY  666

Query  658   DRFGQLIASENAEGNITRREWSRAGLLSAVIHPDGSRESLVWNERGQLTGWRDPLESEVS  717
             D +GQL+   +A  +  R +W   G L+ V  PDGS E + W+  GQL   ++  +    
Sbjct  667   DALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRH  726

Query  718   WAYNALGLPVSLTDRIGRVRQWRYDPRGNLLRLDNGNGAEYRFTYDAVGRPLSETRPDDT  777
             W Y+  G  +S TDR++RV + RYD+ G L++LDN+NG++Y+F  DA GR L E RPDDT
Sbjct  727   WHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDT  786

Query  778   VRHMEWDARGFLCALEENGRPAADGGIARRVQQFSYDDSGLLIGRTQRHAEYRYFRDLSG  837
                   +A G    + + G +  +++ + +  +++YD  G LI+R     +  Y +D  G
Sbjct  787   RYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMG  846

Query  838   QITRIRRTPTAEGVALGIESDEIVYRHDANGRVLSESGINGAVGYEWDALSNLTGLTLPG  897
             ++    RTPT +G  LGI ++ + + +DA GR+  E     A++Y+ DAL+NLT L LP 
Sbjct  847   NLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLELPN  906

Query  898   EQKLAWLHYGSGHVSAIRFGQQLVTEFTRDRLHREVRRTQGAREQLRQYDSLGRRTLQ--  955
             ++ + WLHYGSGHVSAIRF +QLV+EF RD LHRE RRTQG   Q RQYD LGRR  Q  
Sbjct  907   DDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQSS  966

Query  956   -RSELSTDVTLPEKALLERLYRYTARGELSGVSDTLRGEVDYGYDAEGRLLKHYEARQGH  1014
               S L+  +T PE+++L R Y+Y    EL++V D+ RG + YGYD EGRL     ++ G+
Sbjct  967   ISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQ  1026

Query  1015  SRAQF---------SYdaadnlaasddaaPVTDNRLQHWQALFMKYDHWGNLVSRRNGLY  1065
             +  ++         + +++++ + +  + P  DNRL +W+     YD  GNL  R +G  
Sbjct  1027  TTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYR  1086

Query  1066  EQHYAYDAENRLVSARGTGPEGRFEARYHYDALGRRTRKIVTTTHGTTETRFLWQGYRLL  1125
              Q+Y YD++NRLV+A+G G  G FEA+YHYDALGRR  K+V T +G  ET+FLWQG RLL
Sbjct  1087  TQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLRLL  1146

Query  1126  QEQQESGLCNTYINDPNEAWSPLARVDHLRDQNSGEIYWFNTDLNGAPLEVTDERGAVRW  1185
             Q + + +  +TY  DPNEA +PLA ++  R    + +YW++TDLNG+P EVT+ +G + W
Sbjct  1147  QSRTDESQ-QTYCYDPNEAYTPLACIE--RRYGEDTLYWYHTDLNGSPQEVTNAQGEMVW  1203

Query  1186  SGQYGSFGEVRHQSEGFSRLVNRT-AMAHQPLRYAGQYADGETGLHYNLFRYYDPQVGRF  1244
             SGQYG FG+V +Q+++  R V++  +  +QPLRYAGQY D+ETGLHY  +RYY P+VGRF
Sbjct  1204  SGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRF  1263

Query  1245  IVQDPIGLNGGWNLYQYAPNPLGWIDPLGLLTYNTMPSITGFQKHHIIP  1293
             I  DPIGL GG NLYQYAPNPLGWIDP GL    T ++   +Q  + I 
Sbjct  1264  ITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITYQGIDAIT  1312

26) A3UG_05760 in NC_018079


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  737 bits (2788),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 545/1234 (45%), Positives = 801/1234 (65%), Gaps = 33/1234 (2%)

Query  68    TGELATAARDSIADAGASSMTKKGVITSGSPNVFINSKPAAIATDSAVKCSDDGSQQMAE  127
             +  L+  ARD+  DAG +S++  G I +GS+NV  NSK+AA+AT SAV C  D +QQ+A+
Sbjct  69    ANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQ  128

Query  128   GSKRVSINSQPASRIGDRTTCDAKVMTGSDNVFIGGDPQQTLPIQSEVPEWLYKVSDltl  187
             GS  V IN+ PA+R  D+TTCDA +M GS NVFIGG+ + TLPI SE+P+W Y VSDLT+
Sbjct  129   GSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTM  188

Query  188   lfagllggwggaagkvgalSKLLGKIPGINKLARIACRAGTLMTGVAAAGIIARPVDIVS  247
             + AGL++  G+ +   GA+ KL++K+PG +K+A+IACR + L   ++  GI++ PVD+ S
Sbjct  189   FAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTS  248

Query  248   GQKFLSGDDELDFVLPSRLPVRWQRYWRSGNPGDSVLGRGWSLFWESRLEPYQDGLVWRA  307
             GQKFL+++DE DF L + LP+ WQR   S+   ++VLGRGW+LFWES L   +DG++WR 
Sbjct  249   GQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRN  308

Query  308   PSGDYVAFPNVPKGMRTYCESEKNWLERHHDDSWSVYDVSGERW--HYAPLQDDAPSLLQ  365
               GDY++FP++P G +T+C  ++ WL + +D+ W + D +   W  HY+ ++ ++ + L 
Sbjct  309   TYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLA  366

Query  366   RISEPCGNDILFEWNADNTLHALTDSAGQRVVCRY--DRDRLTGAWL---DDEICLVSYA  420
              I++  GN   F+ N ++ + ++T+++G  + C Y  +R+RLT+ W    D++I    Y 
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  421   YDEQRQLVCVTGRGGSVRRRFSW--QDGLMSAHEDANGLLSEYRWREIDGLPRVVGFRHS  478
             Y+E  QL  V  R+++V RRF+W  ++GL+  HE+  GL  +Y+W+EID++  V   +  
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTC  486

Query  479   GGEQLTFEYDFDNGTRRATREDGAQAHWLVDDDDNVARFTDYDGRQTTFVY-RDGELSDV  537
              G+   + YD +   R AT +DG+QA W++D+++ V+R+TD  +++  +     G+ ++ 
Sbjct  487   EGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGY  546

Query  538   ILPGGAMRCSTWDKYGRMTSETDPAGRRTEYYW-Y-RLTDRITRTVYPDGTSSQAMYDLC  595
               P G  R   WD  GR+ S TD+ G  T   W Y R TDR T    PDGT  +   D  
Sbjct  547   RSPRGHQRQCQWDELGRLVSVTDANGAETR--WQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  596   GRLLSETDPAGNATAYHYPDEEENLPESITDAIGGVVRLVWNHQGLLMQRTDCSGSVTRF  655
             GRLL ETD  G++T Y YP+    LP+SITDA+GG  +L+W++QG L   TDCSG  T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  656   TYDRFGQLIASEDAEGNITRREWNNAGLLSAVIHPDGSRESLVWNERGQLTGWRDPLESE  715
              YD +GQL+   DA  +  R +W+  G L+ V  PDGS E + W+  GQL   ++  +  
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  716   VRWAYNALGLPVSLTDRIGRVRQWRYDPRGNLLRLDNGNGAEYRFTYDAVGRPLSETRPD  775
              +W Y+  G  +S TDR++RV + RYD+ G L++LDN+NG++Y+F  DA GR L E RPD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  776   ETVRHMEWDARGLLCALEENGRPAADGGIARRVQQFSYDDSGLLIGRTQRHAEYRYVRDL  835
             +T      +A G    + + G +  +++ + +  +++YD  G LI+R     +  Y +D 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  836   SGQITHIRRTPTAEGVALGIESDEIAYRHDAAGRVLSESGINGAVGYEWDALSNLTGLTL  895
              G++    RTPT +G  LGI ++ +++ +DA GR+  E     A++Y+ DAL+NLT L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  896   PGEQKLAWLHYGSGHVSAIRFGQQLVTEFTRDRLHREVRRTQGAREQLRQYDSLGRRTLQ  955
             P ++ + WLHYGSGHVSAIRF +QLV+EF RD LHRE RRTQG   Q RQYD LGRR  Q
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  956   ---RSELSTEVTLPEQAIRERLYRYTARGELSGVSDTLRGEVDYGYDAEGRLLKHYEARQ  1012
                 S L+  +T PEQ+I  R Y+Y    EL++V D+ RG + YGYD EGRL     ++ 
Sbjct  965   SSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHS  1024

Query  1013  GHSRAQF---------SYdaadnlaanddaVPVTDNRLQHWQALFMKYDHWGNLVSRRNG  1063
             G++  ++         + +++++ +    + P  DNRL +W+     YD  GNL  R +G
Sbjct  1025  GQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEG  1084

Query  1064  LYEQHYAYDAENRLVSARGTGPEGRFEARYHYDALGRRTSKIVTTAHGTTETRFLWQGYR  1123
                Q+Y YD++NRLV+A+G G  G FEA+YHYDALGRR SK+V T++G  ET+FLWQG R
Sbjct  1085  YRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLR  1144

Query  1124  LLQEQQQTGLCSTYIYDPNEAWSPLARVDHLRDQKSGEIYWFNTDLNGAPLEVTDERGAV  1183
             LLQ + + +   TY YDPNEA +PLA ++  R    + +YW++TDLNG+P EVT+ +G +
Sbjct  1145  LLQSRTDESQ-QTYCYDPNEAYTPLACIE--RRYGEDTLYWYHTDLNGSPQEVTNAQGEM  1201

Query  1184  RWSGQYGSFGEVRHQSEGFSRVVNRT-AMAHQPLRYAGQYADGETGLHYNLFRYYDPQVG  1242
              WSGQYG FG+V +Q+++  R V++  +  +QPLRYAGQY D+ETGLHY  +RYY P+VG
Sbjct  1202  VWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVG  1261

Query  1243  RFIVQDPIGLAGGnlnlynyapnpllWIDPMGLA  1276
             RFI  DPIGLAGG LNLY+YAPNPL WIDP GLA
Sbjct  1262  RFITPDPIGLAGG-LNLYQYAPNPLGWIDPWGLA  1294

27) PCC21_041420 in NC_018525


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  736 bits (2783),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 591/1315 (45%), Positives = 855/1315 (66%), Gaps = 41/1315 (3%)

Query  3     EAARVGDGIGHSGALAGMIagtivggliaavggiaagalfvaglaSSCLGVGVLLIGLSF  62
              AARVGD+IGHS ALAG+I+GTI+GGLI   GGI +G LF AG AS+CLGVG+LLIG S+
Sbjct  4     AAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGASI  63

Query  63    AVGWATGVLAEKARDGIAEAGASSMSKAGTIDTGSRNVFINGMKAALATLSVASCSKDGP  122
             AVG A+  L+EKARD+  +AG +S+S +G+I TGS NV  N+  AA+ATLS  +C KD  
Sbjct  64    AVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD-K  122

Query  123   SMQVAQGSETVYINNQPASRLGDKVNCSATITEGSSNVFIGGKAKSTLPIKPEVPEWLYK  182
             + QVAQGS +V+IN  PA+R  DK  C A+I  GS+NVFIGG + +TLPI +E+P+W Y 
Sbjct  123   AQQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYT  182

Query  183   VSDLTLLFAGLIggvggaasklgklgqllqklpgINKIQRIACRFGVLMTGVAAGGIIAR  242
             VSDLT++ AGLI+  G+ +   G + +L+ KLPG +KI +IACR++ L   ++  GI++ 
Sbjct  183   VSDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTN  242

Query  243   PIDIVSGQKFLSDEDELDFILPSRLSVYWQRYWRSGNPSDSVLGKGWSLFWETTLTRYQD  302
             P+D+ SGQKFL+DEDE DF L + L+++WQR   S+   ++VLG+GW+LFWE++L+R +D
Sbjct  243   PVDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDD  302

Query  303   GLVWRAPSGDLISFPFVPIGQRTYCPAEKRWLEHHQDESWSVYGPDGEVW--YYTALSSQ  360
             G++WR   GD I+FP +P G++T+CP ++ WL H +D  W +   D+  W   Y  + +Q
Sbjct  303   GILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCI--RDAGEWVYHYGKFDAQ  360

Query  361   GKAVLARVAESCGNDMLLFWNDDDTLNALTDSAGRHITCRYLDGR--LESVWL---DEST  415
             G A LA ++++ GN   +  ND++ + ++T+++G  + C Y   R  L +VW    D   
Sbjct  361   GLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDI  420

Query  416   CLVHYTYNTQKQLvtvtgrggsvrrrftW-QDDGLMASHEDANGLLSEYQWQEIADLPRV  474
                +Y YN   QL +V  R+++V RRF W +D+GL+  HE+  GL  +YQWQEI D+  V
Sbjct  421   IRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCV  480

Query  475   VAYRNSAGEQLTLEYDFAGQRRTARREDGLVAQWALDGDDHVVRFIDYDGRETNLNY-TD  533
                +   G+   L YD   ++RTA  +DG  A W LD +++V R+ D  ++E +L+  T 
Sbjct  481   AEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTA  540

Query  534   GELCEVILPGGASRKTIWDSYGRLLSEIDPLGRETHYQWYRLTDNVALVTYADGSQERMQ  593
             G+      P G  R+  WD  GRL+S  D+ G ET+ Q  R TD  ++V  +DG+QER Q
Sbjct  541   GQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQ  600

Query  594   YDDFNRLVEEVDALGNSTRYHYPNTQERLPDSVIDALGGTVTLAWNHQGLLTARTDCSGQ  653
              D   RL++E D LG+ST+Y YP+ +  LPDS+ DALGG   L W++QG LT+ TDCSGQ
Sbjct  601   WDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQ  660

Query  654   CSTFEYDHYGQLLASVDAEGHTTRREWDACGQLTGVIYPDGRRETLRWNTRGQLQTWRDA  713
              +   YD  GQLL   DA  +  R +WD+ G+LT V  PDG  E + W+  GQL   +++
Sbjct  661   PTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQG  720

Query  714   QNSEVRWQYNVLGQPVSVTDRLRRTKRWHYDTrglllrlengngAEYQFGYDAVGRLVKE  773
             +N   +W+Y+V GQ +S TDRL R  R +YD+ G L++L+N+NG++Y+F  DA GRL+ E
Sbjct  721   HNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEE  780

Query  774   RRVDGVELTFCYDDAGHLCQRAQRGNAANDAAITHI---YQHDAAGQLVRRAHAHAEFHY  830
             +R D+   ++ Y+  G+  + +QRG + N+A+  +       DA G+L+ R     +  Y
Sbjct  781   QRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCY  840

Query  831   QHSDRGRLVALKREPTEEGLALGLIADEVRLTYDAAGYLSGEYGSEGDICYTRDVLGNVS  890
             Q    G L++  R PTE+G  LG++++ V +  DA G ++ E  +   + Y  D LGN++
Sbjct  841   QWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLT  900

Query  891   TLSLPDGDALHWLRYGSGHVSAVKFNHQVISEFTRDRLHREITRTQGRREQRRDYDRLGR  950
              L LP++D ++WL+YGSGHVSA++FN+Q++SEF RD LHRE  RTQG   Q+R+YD LGR
Sbjct  901   RLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGR  960

Query  951   ------LTSQRSGLWDVAEPEQQILSRALSYTASGELASVNDSLRGDVQYDYDAEGRLLK  1004
                   ++S+ +    ++ PEQ IL RA  Y    ELA+V+DS RG + Y+YD EGRL  
Sbjct  961   RRWQSSISSRLTE--ALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRS  1018

Query  1005  RIDVHWQVHHRAYGYDAADNIQDAGHSRSAplplpdnrllnwrnlwn-------QYDSQG  1057
              +  H    + +  YD ADN        + + P + +      N          +YD+ G
Sbjct  1019  TVSPH--SGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFG  1076

Query  1058  NLTRRRDGETEQFYKYDADNRLLEARGRGLQGEFVACYNYDALGRRTRKTVIWGEDGKQE  1117
             NL+ R +G   Q Y+YD+DNRL+ A+G G +G F A Y+YDALGRR  K V++  +G+Q 
Sbjct  1077  NLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSK-VVRTPQGNQ-  1134

Query  1118  ETRFLWEGFRLLQARHADRTESYIYDPNVWWSPLARITQRPGDNEGDIRWFNTDLNGAPL  1177
             ET+FLW+G+RLLQ+R  +  ++Y YDPN   +PLA I +R G++   + W++TDLNG+P 
Sbjct  1135  ETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGED--TLYWYHTDLNGSPQ  1192

Query  1178  EMTDADGAVRWSGDYGSFGALNGQTQDSEGFRN-GKPVES--QPLRYAGQYADEETGLHY  1234
             E+T+A+G + WSG+YG FG +  QT+     RN +KP+    QPLRYAGQY D+ETGLHY
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAM--WRNVSKPLGQFRQPLRYAGQYLDDETGLHY  1250

Query  1235  NLFRYYDPTVGRFTTQDPIGLAGGINLYQYAPNPLGWVDPLGLSSLMLDPKDINF  1289
               +RYY P VGRF T DPIGLAGG+NLYQYAPNPLGW+DP GL++    + +I +
Sbjct  1251  TTYRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTTATHITY  1305

28) rhsD in NC_013956


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  735 bits (2782),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 540/1228 (44%), Positives = 791/1228 (65%), Gaps = 25/1228 (2%)

Query  86    SMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGPQQMAEGSSRVYINGLPASRIDDR  145
             S++P G I TGS+NV  NSK+AA+AT S V+C  D +QQ+A+GSS V+INGLPA+R +D+
Sbjct  87    SLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQGSSSVFINGLPAARRNDK  146

Query  146   TTCDAKVMTGSDNVYIGGEPEQTLPIQPEVPEWVYKASDLTllfaglaggvggaagkvga  205
             TTCDA +M GS NV+IGG  E TLPI +E+P+W Y  SDLT++ AGL +  G+ +   GA
Sbjct  147   TTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGA  206

Query  206   lgkllSKIPGINKIARVACRAGALMTGVAAAGILARPVDIVSGQKFLSGDDELDFVLPSR  265
             + KL++K+PG +KIA++ACR ++L   ++  GIL+ PVD+ SGQKFL+++DE DF L + 
Sbjct  207   VQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTSGQKFLNDEDERDFTLDGE  266

Query  266   LPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDGLVWRAPSGDYVSFPLVPKGQRTY  325
             LPL WQR   S+   ++VLGRGWNLFWE+ L R +DG++WR   GDY++FP +P G++T+
Sbjct  267   LPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTF  326

Query  326   CEAEKHWLEHHRDDSWSLYDISGERWHFMPLRDDAPSL-PLC-LTEPCGNEIQFDWNSDH  383
             C  ++ WL H  D+ W + D +   W +   + DA +L PL  +T+  GN   F+ N ++
Sbjct  327   CPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQ  384

Query  384   TLAALTDSAGQRVTCRY--ANNRLAGAWL---DDDICLVSYAYDDIGQLvtvtgrggsvr  438
              + ++T+++G  + C Y    +RL++ W    D+DI    Y Y++ GQL +V  R+++V 
Sbjct  385   QMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVV  444

Query  439   rrFQWCD--GLMVAHEDMNGLLSEYRWQEIDGLPRVVAFRHSGGEQLDFEYDFDNGIRRA  496
             RRF W +  GL++ HE++ GL  +Y+WQEID++  V   +   G+   + YD +   R A
Sbjct  445   RRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTCEGDGYRLAYDEERHQRTA  504

Query  497   RRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVY-CAGELCDVIMPGGAMRCSNWDRYGRM  555
               +DG +A W++D++++V+R+TD  +++  L    AG+  +   P G  R  +WD  GR+
Sbjct  505   TYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRL  564

Query  556   TQEIDPVGRRTTYHWFRMTDRVIRTDYPDLSATQAAYDLNVRLLTETDALNNVTTYHYPD  615
                 D+ G  T  +  R TDR      PD +  +   D + RLL ETD L + T Y YP+
Sbjct  565   VSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPH  624

Query  616   DTELLPDSITDATGGVVKLEWNRQGLLTQRTDCSGSVTTFSYDRFGQLVRSVDAEGHVTQ  675
                LLPDSITDA GG  +L W++QG LT  TDCSG  T   YD +GQL+   DA  +  +
Sbjct  625   PRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIR  684

Query  676   REWNDKGQLCAIIHPDGSRETLHWNTQGQLSAWRDPLETEVRWTYNALGLPVSLTDRIGR  735
              +W+  G+L  +  PDGS E ++W+  GQL   ++  +   +W Y+  G  +S TDR++R
Sbjct  685   YHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSR  744

Query  736   TRRWHYDArgnllrlengnggDYRFTCDPLGRPLSEIRPDKTSRNMEWNARGFLIGLQEN  795
               R +YDA G L++L+N+NGG+Y+F  D+ GR L E RPD T  +   NA G   ++ + 
Sbjct  745   VIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQR  804

Query  796   GQPANDGGIARRWQRFSYDDSGLITQRTTQHAEYHYRRHRSGQLASLVRTPTSDGMALGI  855
             G + N+++ + +  R++YD  G +  R T   +  Y++++ G+L S +RTPT +G  LGI
Sbjct  805   GLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGI  864

Query  856   EDDEIAFTYDVAGQLLTEAGINGKLDYEWDALGNLTHLTLPGEQQLAWLHYGSGHVSAIR  915
               + ++F  D  G++  E      L Y+ DALGNLT+L LP ++++ WLHYGSGHVSAIR
Sbjct  865   LTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIR  924

Query  916   FNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRR---TMQRSELHSEVVLPEKAILE  972
             FN+QLVSEF RD LHRE RR+QG   Q RQYD LGRR   +   S L   +  PE++IL 
Sbjct  925   FNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGILW  984

Query  973   RAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYEARQGHSTSHFTYdnad------n  1026
             RA++Y    EL +V D+ RG + YGYD+EGRL     ++ G++T H+   +         
Sbjct  985   RAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALMLPLQT  1044

Query  1027  laanddalhalPVTDNRVHHWQNLFMKYDDWGNLVSRRSGLHEQHFTYDAENRLISAKGN  1086
               ++  A  + P  DNR+ +W++    YD  GNL  R  G + Q++ YD++NRL++AKG+
Sbjct  1045  PESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGD  1104

Query  1087  GPDGGFTAHYHYDALGRRTCKVVSTQHDRKEVRFLWQGYRLLQEQQDNGQCQTYVYDPNE  1146
             G  G F A+YHYDALGRR  KVV T ++ +E +FLWQG RLLQ + D++Q QTY YDPNE
Sbjct  1105  GQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLRLLQSRTDESQ-QTYCYDPNE  1163

Query  1147  AWSPLARIDHMAAGGRGDVLWFNTDINGAPLEVTDERGNIRWSGQYGSFGEVRRQTEGF-  1205
             A +PLA I++    G + + W++TD+NG+P EVT+ +G++ WSGQYG FG+V RQT++  
Sbjct  1164  AYTPLACIERRY--GEDTLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMW  1221

Query  1206  TRLAKQSALPHQPLRYAGQYADSETGLHYNLFRYYDPQVGRFTVQDPIGLEGGWNLYQYA  1265
               ++K  +  +QPLRYAGQY D ETGLHY  +RYY P+VGRF   DPIGL GG NLYQYA
Sbjct  1222  RNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYA  1281

Query  1266  PNPLSWVDPLGLSNCGAPNKKTSYEGIS  1293
             PNPL+W+DP GL+   +     +Y+GI 
Sbjct  1282  PNPLGWIDPWGLAGSPTTATHITYQGID  1309

29) rhsD in NC_017531


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  731 bits (2766),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 538/1213 (45%), Positives = 785/1213 (65%), Gaps = 25/1213 (2%)

Query  86    SMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGPQQMAEGSSRVYINGLPASRIDDR  145
             S++P G I TGS+NV  NSK+AA+AT S V+C  D +QQ+A+GSS V+INGLPA+R +D+
Sbjct  87    SLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQGSSSVFINGLPAARRNDK  146

Query  146   TTCDAKVMTGSDNVYIGGEPEQTLPIQPEVPEWVYKASDLTllfaglaggvggaagkvga  205
             TTCDA +M GS NV+IGG  E TLPI +E+P+W Y  SDLT++ AGL +  G+ +   GA
Sbjct  147   TTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGA  206

Query  206   lgkllSKIPGINKIARVACRAGALMTGVAAAGILARPVDIVSGQKFLSGDDELDFVLPSR  265
             + KL++K+PG +KIA++ACR ++L   ++  GIL+ PVD+ SGQKFL+++DE DF L + 
Sbjct  207   VQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTSGQKFLNDEDERDFTLDGE  266

Query  266   LPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDGLVWRASSGDYVSFPLVPKGQRTY  325
             LPL WQR   S+   ++VLGRGWNLFWE+ L R +DG++WR + GDY++FP +P G++T+
Sbjct  267   LPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTF  326

Query  326   CEAEKRWLEHHRDDSWSLYDISGERWHFMPLRDDAPSL-PLC-LTEPCGNEIQFDWNPDH  383
             C  ++ WL H  D+ W + D +   W +   + DA +L PL  +T+  GN   F+ N ++
Sbjct  327   CPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQ  384

Query  384   TLAALTDSAGQRVTCRY--ANNRLAGAWL---DDDICLVSYAYDDIGQLvtvtgrggsvr  438
              + ++T+++G  + C Y    +RL++ W    D+DI    Y Y++ GQL +V  R+++V 
Sbjct  385   QMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVV  444

Query  439   rrFQWCD--GLMVAHEDMNGLLSEYRWQEIDGLPRVVAFRHSGGEQLDFEYDFDNGIRRA  496
             RRF W +  GL++ HE++ GL  +Y+WQEID++  V   +   G+   + YD +   R A
Sbjct  445   RRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTCEGDGYRLAYDEERHQRTA  504

Query  497   RRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVY-RAGELCDVIMPGGAMRCSNWDRYGRM  555
               +DG +A W++D++++V+R+TD  +++  L    AG+  +   P G  R  +WD  GR+
Sbjct  505   TYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRL  564

Query  556   TQEIDPVGRRTTYHWFRMTDRVIRTDYPDLSATQAAYDLNVRLLTETDALNNVTTYHYPD  615
                 D+ G  T  +  R TDR      PD +  +   D + RLL ETD L + T Y YP+
Sbjct  565   VSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPH  624

Query  616   DTELLPDSITDATGGVVKLEWNRQGLLTQRTDCSGSVTTFSYDRFGQLVRSVDAEGHVTQ  675
                LLPDSITDA GG  +L W++QG LT  TDCSG  T   YD +GQL+   DA  +  +
Sbjct  625   PRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIR  684

Query  676   REWNDKGQLCAIIHPDGSRETLHWNTQGQLSAWRDPLETEVRWTYNALGLPVSLTDRIGR  735
              +W+  G+L  +  PDGS E ++W+  GQL   ++  +   +W Y+  G  +S TDR++R
Sbjct  685   YHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSR  744

Query  736   TRRWHYDArgnllrlengnggDYRFTCDPLGRPLSEIRPDKTSRNMEWNARGFLIGLQEN  795
               R +YDA G L++L+N+NGG+Y+F  D+ GR L E RPD T  +   NA G   ++ + 
Sbjct  745   VIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQR  804

Query  796   GQPANDGGIARRWQRFSYDDSGLITQRTTQHAEYHYRRHRSGQLASLVRTPTSDGMALGI  855
             G + N+++ + +  R++YD  G +  R T   +  Y++++ G+L S +RTPT +G  LGI
Sbjct  805   GLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGI  864

Query  856   EDDEIAFTYDVAGQLLTEAGINGKLDYEWDALGNLTHLTLPGEQQLAWLHYGSGHVSAIR  915
               + ++F  D  G++  E      L Y+ DALGNLT+L LP ++++ WLHYGSGHVSAIR
Sbjct  865   LTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIR  924

Query  916   FNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRR---TMQRSELHSEVVLPEKAILE  972
             FN+QLVSEF RD LHRE RR+QG   Q RQYD LGRR   +   S L   +  PE++IL 
Sbjct  925   FNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGILW  984

Query  973   RAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYEARQGHSTSHFaydnad------n  1026
             RA++Y    EL +V D+ RG + YGYD+EGRL     ++ G++T H+   +         
Sbjct  985   RAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALMLPLQT  1044

Query  1027  laanddalhalPVTDNRLHHWQNLFMKYDDWGNLVSRRSGLHEQHFTYDAENRLISAKGN  1086
               ++  A  + P  DNRL +W++    YD  GNL  R  G + Q++ YD++NRL++AKG+
Sbjct  1045  PESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGD  1104

Query  1087  GPDGGFTAHYHYDALGRRTRKVVSTQHDRKEVRFLWQGYRLLQEQHENGQCQTYVYDPNE  1146
             G  G F A+YHYDALGRR  KVV T ++ +E +FLWQG RLLQ + +++Q QTY YDPNE
Sbjct  1105  GQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLRLLQSRTDESQ-QTYCYDPNE  1163

Query  1147  AWSPLARIDHMAAGERGDVLWFNTDLNGAPLEVTDERGDIRWSGQYGSFGEVRRQTEGF-  1205
             A +PLA I++  + +   + W++TDLNG+P EVT+ +G++ WSGQYG FG+V RQT++  
Sbjct  1164  AYTPLACIERRYGED--TLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMW  1221

Query  1206  TRLAKQSALPHQPLRYAGQYADSETGLHYNLFRYYDPQVGRFTVQDPIGLEGGWNLYQYA  1265
               ++K  +  +QPLRYAGQY D ETGLHY  +RYY P+VGRF   DPIGL GG NLYQYA
Sbjct  1222  RNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYA  1281

Query  1266  PNPLSWIDPLGLN  1278
             PNPL+WIDP GL 
Sbjct  1282  PNPLGWIDPWGLA  1294

30) PAGR_g3082 in NC_017554


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  731 bits (2767),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 585/1301 (45%), Positives = 851/1301 (66%), Gaps = 25/1301 (1%)

Query  3     EAARLGDDIGHSHALAGMiagtivggliaaaggiaagalmiagigaSClgvgvllvglsi  62
              AAR+GD IGHS+ALAG+I+GTI+GGLI  AGGI +G L  AG +++CLGVG+LL+G SI
Sbjct  4     AAARVGDAIGHSQALAGLIGGTILGGLINVAGGILGGMLFAAGCASACLGVGILLIGASI  63

Query  63    gvgylTGELataardgiadagaaSMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGP  122
             +VG  +  L+  ARD+  DAG  S++P G I TGS+NV  NSK+AA+AT S V+C  D +
Sbjct  64    AVGMAANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKA  123

Query  123   QQMAEGSSRVYINGLPASRIDDRTTCDAKVMTGSDNVYIGGEPEQTLPVQPEVPEWVYKA  182
             QQ+A+GSS V+INGLPA+R +D+TTCDA +M GS NV+IGG  E TLP+ +E+P+W Y  
Sbjct  124   QQVAQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTV  183

Query  183   SDLTllfaglaggvggaagkvgalgkllSKIPGINKIARVACRAGALMTGVAAAGILARP  242
             SDLT++ AGL +  G+ +   GA+ KL++K+PG +KIA++ACR ++L   ++  GIL+ P
Sbjct  184   SDLTMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNP  243

Query  243   VDIVSGQKFLSGDDELDFVLPSRLPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDG  302
             VD+ SGQKFL+++DE DF L + LPL WQR   S+   ++VLGRGWNLFWE+ L R +DG
Sbjct  244   VDVTSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDG  303

Query  303   LVWRAPSGDYVSFPLVPKGQRTYCEAEKRWLEHHRDDSWSLYDISGERWHFMPLRDDAPS  362
             ++WR   GDY++FP +P G++T+C  ++ WL H  D+ W + D +   W +   + DA +
Sbjct  304   ILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQG  361

Query  363   L-PLC-LTEPCGNEIQFDWNPDHTLAALTDSAGQRVTCRY--ANNRLAGAWL---DDDIC  415
             L PL  +T+  GN   F+ N ++ + ++T+++G  + C Y    +RL++ W    D+DI 
Sbjct  362   LAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDII  421

Query  416   LVSYAYDDIGQLvtvtgrggsvrrrFQWRD--GLMVAHEDMNGLISEYRWQEIDGLPRVV  473
                Y Y++ GQL +V  R+++V RRF W +  GL++ HE++ GL  +Y+WQEID++  V 
Sbjct  422   RARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVA  481

Query  474   AFRHSGGEQLDFEYDFDNGIRRARRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVY-RAG  532
               +   G+   + YD +   R A  +DG +A W++D++++V+R+TD  +++  L    AG
Sbjct  482   EQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAG  541

Query  533   ELCDVIMPGGAMRCSNWDRYGRMTQEIDPVGRRTTYHWFRMTDRVIRTDYPDLSAAQAAY  592
             +  +   P G  R  +WD  GR+    D+ G  T  +  R TDR      PD +  +   
Sbjct  542   QPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQW  601

Query  593   DLNVRLLTETDALNNVTTYHYPDDTELLPDSITDATGGVVKLEWNRQGLLTQRTDCSGSV  652
             D + RLL ETD L + T Y YP+   LLPDSITDA GG  +L W++QG LT  TDCSG  
Sbjct  602   DAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQP  661

Query  653   TTFSYDRFGQLVRSVDAEGHVTQREWNDKGQLCAIIHSDGSRETLHWNTQGQLSAWRDPL  712
             T   YD +GQL+   DA  +  + +W+  G+L  +  +DGS E ++W+  GQL   ++  
Sbjct  662   TQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGH  721

Query  713   ETEVRWTYNALGLPVSLTDRIGRTRRWHYDArgnllrlengnggDYRFTCDPLGRPLSEI  772
             +   +W Y+  G  +S TDR++R  R +YDA G L++L+N+NGG+Y+F  D+ GR L E 
Sbjct  722   NQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQ  781

Query  773   RPDKTSRNMEWNARGFLIGLQENGQPANDGGIARRWQRFSYDDSGLITQRTTQHAEYHYR  832
             RPD T  +   NA G   ++ + G + N+++ + +  R++YD  G +  R T   +  Y+
Sbjct  782   RPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQ  841

Query  833   RHRSGQLASLVRTPTSDGMALGIEDDEIAFTYDVAGQLLTEAGINGKLDYEWDALGNLTH  892
             +++ G+L S +RTPT +G  LGI  + ++F  D  G++  E      L Y+ DALGNLT+
Sbjct  842   WDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTR  901

Query  893   LTLPGEQQLAWLHYGSGHVSAIRFNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRR  952
             L LP ++++ WLHYGSGHVSAIRFN+QLVSEF RD LHRE RR+QG   Q RQYD LGRR
Sbjct  902   LELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRR  961

Query  953   ---TMQRSELHSEVVLPEKAILERAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYE  1009
                +   S L   +  PE++IL RA++Y    EL +V D+ RG + YGYD+EGRL     
Sbjct  962   RWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVS  1021

Query  1010  ARQGHSTSHFaydnad------nlaanddalhalPVTDNRLHHWQNLFMKYDDWGNLVSR  1063
             ++ G++T H+   +           ++  A  + P  DNRL +W++    YD  GNL  R
Sbjct  1022  PHSGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSER  1081

Query  1064  RSGLHEQHFTYDAENRLISAKGNGPDGGFTAHYHYDALGRRTRKVVSTQHDRKEVRFLWQ  1123
               G + Q++ YD++NRL++AKG+G  G F A+YHYDALGRR  KVV T ++ +E +FLWQ
Sbjct  1082  LEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQ  1141

Query  1124  GYRLLQEQHENGQCQTYVYDPNEAWSPLARIDHMAAGERGDVLWFNTDLNGAPLEVTDER  1183
             G RLLQ + +++Q QTY YDPNEA +PLA I++  + +   + W++TDLNG+P EVT+ +
Sbjct  1142  GLRLLQSRTDESQ-QTYCYDPNEAYTPLACIERRYGED--TLYWYHTDLNGSPQEVTNAQ  1198

Query  1184  GDIRWSGQYGSFGEVRRQTEGF-TRLAKQSALPHQPLRYAGQYADSETGLHYNLFRYYDP  1242
             G++ WSGQYG FG+V RQT++    ++K  +  +QPLRYAGQY D ETGLHY  +RYY P
Sbjct  1199  GEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAP  1258

Query  1243  QVGRFTVQDPIGLEGGWNLYQYAPNPLSWVDPLGLSNLSTT  1283
             +VGRF   DPIGL GG NLYQYAPNPL+W+DP GL+  +TT
Sbjct  1259  EVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGSPTT  1299

31) rhsD7 in NC_016816


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 539/1218 (45%), Positives = 789/1218 (65%), Gaps = 25/1218 (2%)

Query  86    SMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGPQQMAEGSSRVYINGLPASRIDDR  145
             S++P G I TGS+NV  NSK+AA+AT S V+C  D +QQ+A+GSS V+INGLPA+R +D+
Sbjct  87    SLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKAQQVAQGSSSVFINGLPAARRNDK  146

Query  146   TTCDAKVMTGSDNVYIGGEPEQTLPVQPEVPEWVYKASDLTllfaglaggvggaagkvga  205
             TTCDA +M GS NV+IGG  E TLP+ +E+P+W Y  SDLT++ AGL +  G+ +   GA
Sbjct  147   TTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMFAAGLISFGGAVSRGPGA  206

Query  206   lgkllSKIPGINKIARVACRAGALMTGVAAAGILARPVDIVSGQKFLSGDDELDFVLPSR  265
             + KL++K+PG +KIA++ACR ++L   ++  GIL+ PVD+ SGQKFL+++DE DF L + 
Sbjct  207   VQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVTSGQKFLNDEDERDFTLDGE  266

Query  266   LPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDGLVWRASSGDYVSFPLVPKGQRTY  325
             LPL WQR   S+   ++VLGRGWNLFWE+ L R +DG++WR + GDY++FP +P G++T+
Sbjct  267   LPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTF  326

Query  326   CEAEKRWLEHHRDDSWSLYDISGERWHFMPLRNDAPSL-PLC-LTEPCGNEIQFDWNPDH  383
             C  ++ WL H  D+ W + D +   W +   + DA +L PL  +T+  GN   F+ N ++
Sbjct  327   CPEQQCWLIHLEDGRWCIRDAGE--WVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQ  384

Query  384   TLAALTDSAGQRVTCRYANDR--LAGAWL---DDDICLVSYAYDDIGQLvtvtgrggsvr  438
              + ++T+++G  + C Y  +R  L++ W    D+DI    Y Y++ GQL +V  R+++V 
Sbjct  385   QMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVV  444

Query  439   rrFQWCD--GLMVAHEDMNGLLSEYRWQEIDGLPRVVAFRHSGGEQLDFEYDFDNGIRRA  496
             RRF W +  GL++ HE++ GL  +Y+WQEID++  V   +   G+   + YD +   R A
Sbjct  445   RRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTCEGDGYRLAYDEERHQRTA  504

Query  497   RRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVY-RAGELCDVIMPGGAMRCSNWDRYGRM  555
               +DG +A W++D++++V+R+TD  +++  L    AG+  +   P G  R  +WD  GR+
Sbjct  505   TYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRL  564

Query  556   TQEIDPVGRRTTYHWFRMTDRVIRTDYPDLSATQAAYDLNVRLLTETDALNNVTTYHYPD  615
                 D+ G  T  +  R TDR      PD +  +   D + RLL ETD L + T Y YP+
Sbjct  565   VSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPH  624

Query  616   DTELLPDSITDATGGVVKLEWNRQGLLTQRTDCSGSVTTFSYDRFGQLVRSVDAEGHVTQ  675
                LLPDSITDA GG  +L W++QG LT  TDCSG  T   YD +GQL+   DA  +  +
Sbjct  625   PRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIR  684

Query  676   REWNDKGQLCAIIHPDGSRETLHWNPQGQLSAWRDPLETEVRWTYNALGLPVSLTDRIGR  735
              +W+  G+L  +  PDGS E ++W+P GQL   ++  +   +W Y+  G  +S TDR++R
Sbjct  685   YHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSR  744

Query  736   TRRWHYDArgnllrlengnggDYRFTCDPLGRPLSEIRPDKTSRNMEWNARGFLIGLQEN  795
               R +YDA G L++L+N+NGG+Y+F  D+ GR L E RPD T  +   NA G   ++ + 
Sbjct  745   VIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQR  804

Query  796   GQPANDGGIARRWQRFSYDDSGLITQRTTQHAEYHYRRHRSGQLASLVRTPTSDGMALGI  855
             G + N+++ + +  R++YD  G +  R T   +  Y++++ G+L S +RTPT +G  LGI
Sbjct  805   GLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGI  864

Query  856   EEDEIAFTYDVAGQLLTEAGINGKLDYEWDALGNLTHLTLPGEQQLAWLHYGSGHVSAIR  915
               + ++F  D  G++  E      L Y+ DALGNLT+L LP ++++ WLHYGSGHVSAIR
Sbjct  865   LTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIR  924

Query  916   FNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRR---TMQRSELHSEVVLPEKAILE  972
             FN+QLVSEF RD LHRE RR+QG   Q RQYD LGRR   +   S L   +  PE++IL 
Sbjct  925   FNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGILW  984

Query  973   RAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYEARQGHSTSHFTYdnad------n  1026
             RA++Y    EL +V D+ RG + YGYD+EGRL     ++ G++T H+   +         
Sbjct  985   RAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPHSGQTTVHYDRADNALMLPLQT  1044

Query  1027  laanddalhalPVTDNRVHHWQNLFMKYDDWGNLVSRRSGLHEQHFTYDAENRLISAKGN  1086
               ++  A  + P  DNR+ +W++    YD  GNL  R  G + Q++ YD++NRL++AKG+
Sbjct  1045  PESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGD  1104

Query  1087  GPDGGFTAHYHYDALGRRTCKVVSTQHDRKEVRFLWQGYRLLQEQQDNGQCQTYVYDPNE  1146
             G  G F A+YHYDALGRR  KVV T ++ +E +FLWQG RLLQ + D++Q QTY YDPNE
Sbjct  1105  GQKGLFEAQYHYDALGRRLSKVVRTPQGNQETHFLWQGLRLLQSRTDESQ-QTYCYDPNE  1163

Query  1147  AWSPLARIDHMAAGERGDVLWFNTDLNGAPLEVTDERGDIRWSGQYGSFGEVRRQTEGF-  1205
             A +PLA I++  + +   + W++TDLNG+P EVT+ +G++ WSGQYG FG+V RQT++  
Sbjct  1164  AYTPLACIERRYGED--TLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQVTRQTDAMW  1221

Query  1206  TRLVKQSALPHQPLRYAGQYADSETGLHYNLFRYYDPQVGRFTVQDPIGLEGGWNLYQYA  1265
               + K  +  +QPLRYAGQY D ETGLHY  +RYY P+VGRF   DPIGL GG NLYQYA
Sbjct  1222  RNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGGLNLYQYA  1281

Query  1266  PNPLSWVDPLGLSNLSTT  1283
             PNPL+W+DP GL+  +TT
Sbjct  1282  PNPLGWIDPWGLAGSPTT  1299

32) Pecwa_0347 in NC_013421


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  725 bits (2743),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 550/1239 (45%), Positives = 815/1239 (66%), Gaps = 40/1239 (3%)

Query  66    ATGELAEKVRDGIADSFASSMSKAGTIDEGSPTVFINGMKAAMAILSIASCNKDGPSMQV  125
             A+  L+EK RD+  D+  +S+S +G+I  GS+ V  N+  AA+A LS  +C+KD  + QV
Sbjct  68    AANALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKD-KAQQV  126

Query  126   AEGSATVYINNQPASRLGDKVNCGATITEGSSNVFIGGATKPMLPIRSEVPAWLYKASDL  185
             A+GS++V+IN  PA+R  DK  C+A+I  GS+NVFIGG+T   LPI SE+P W Y  SDL
Sbjct  127   AQGSSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDL  186

Query  186   TllfaglvggvggmagkagklgkllRELPGLNKLQRLACRFGVLMTSIAAGGIIARPIDI  245
             T++ AGL++  G+++  +G + KL+  LPG +K+ ++ACR++ L   ++  GI++ P+D+
Sbjct  187   TMFAAGLISFGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDV  246

Query  246   VSGQKFLADEEELDFVLPSRLPVYWQRCWRSGNPGDSVLGKGWSLFWETTLTCYQDGLVW  305
              SGQKFL DE+E DF L + LP++WQR   S+   ++VLG+GW+LFWE++L+  +DG++W
Sbjct  247   TSGQKFLNDEDERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILW  306

Query  306   RAPSGDLISFPFVPVGQRSYCPAEKRWLEHHQDESWSVYGPDGEVWSYTALSPQGKAVLA  365
             R   GD I+FP +P G++++CP ++ WL H +D  W + +++  V  Y  + +QG A LA
Sbjct  307   RNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLA  366

Query  366   RIAEPCGHDILFFWNDDDTLQALTDSAGRHLTCRYRDGR--LDSVWL---DESTCLVHYT  420
              I++  G+   F  ND++ + ++T+++G  L C Y+  R  L +VW    D      +Y 
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  421   YNAQRQLItvtgrggsvrrrFTW-HDDGLMASHEEASGLLSEYQWQEIADLPRVVAYRNS  479
             YN   QL +V  R+++V RRF W +D+GL+  HE+ +GL  +YQWQEI D+  V   +  
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENVAGLRCDYQWQEIDDIWCVAEQHTC  486

Query  480   AGEQLTLEYDFAGQRRTARREDGLIAQWLLDDEGHVTHFTDYDGRETTLSY-ADGELCDV  538
              G+   L YD   ++RTA  +DG  A W+LD++ +V+++TD  ++E  L   + G+  + 
Sbjct  487   EGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPTGY  546

Query  539   IMPGGASRKTTWDDYGRLLSETDPLGRETCYQWYRLTGHITLVTYPDGSREQMQYDDLNR  598
               P G  R+  WD+ GRL+S TD+ G ET  Q  R T++ T+V  PDG++E+ Q D   R
Sbjct  547   RSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQGR  606

Query  599   LVEEIDARGNSTRYQYPTAQESLPDSITDALGGTVTLVWNRQGLLTARTDCSGQCSTFEY  658
             L++E D  G+ST+Y YP ++  LPDSITDALGG   L+W++QG LT+ TDCSGQ +   Y
Sbjct  607   LLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQWRY  666

Query  659   DHDGQLLASVDAEGHTTRREWDACGHLTSVIYPDGRRETLRWNARGQLQAWRDAQNSEVR  718
             D  GQLL   DA  +  R +WD+ G+LT V  PDG  E + W++ GQL   ++++N   +
Sbjct  667   DALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQPRH  726

Query  719   WHYNVLGQPVSVTDRLRRTTRWHYDarglllrlengngaaYQFGYDAVGRLVNEQRVDGV  778
             WHY+V GQ +S TDRL R  R +YDA G L++L+N+NG+ Y+F  DA GRL++EQR D+ 
Sbjct  727   WHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPDDT  786

Query  779   ELTFHYDAAGHLCQRSQRG----HAANDEAISHIYQHDAAGQLVRREHAHAVFHYQHNNR  834
               ++ Y+A G+  + +QRG    HA+  E  +++   DA G+L+ R+       YQ ++ 
Sbjct  787   RYSYTYNADGQATDITQRGLSENHASPPEKPTRL-TYDAVGRLIARHTLTEQTCYQWDKM  845

Query  835   GQLLSLKREPTGEGLALGLTADEVRLTYDAAGDLSGEHGSEGDIGYTRDALGNVSALSLP  894
             G+LLS  R PT +G  LG+ ++ V +  DA G ++ EH +   ++Y  DALGN++ L LP
Sbjct  846   GNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLELP  905

Query  895   DGDTLRWLRYGSGHVSAVKFNHQVVSEFTRDRLHREISRTQGRRTQQRAYDSLGR---LT  951
             ++D ++WL+YGSGHVSA++FN+Q+VSEF RD LHRE  RTQG  TQQR YD LGR    +
Sbjct  906   NDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQS  965

Query  952   SQRSGLWD-VAEPEQQLLSRALRYTASGELASVRDSLRGDVQYDYDAEGRLLKRIDVHWQ  1010
             S  S L + ++ PEQ +L RA +Y    ELA+V DS RG + Y+YD EGRL   +  H  
Sbjct  966   SISSRLTEALTTPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPH--  1023

Query  1011  VHHRAYGYDAADNL--------QDSAYSPSARPLSDNRLLNWRHLWN-QYDGQGNLIRRR  1061
               + +  YD ADN         + S+Y+ S++P  DNRL  W + W+ +YD+ GNL  R 
Sbjct  1024  SGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCDNRLTRWEQ-WQYHYDAFGNLSERL  1082

Query  1062  EGTTEQFYQYDADNRLVEARGRGPQGEFVARYGYDALGRRTRKTVTWGDSGKQEETRFLW  1121
             EG   Q Y+YD+DNRLV A+G G +G F A+Y YDALGRR  K V    +  ++ET+FLW
Sbjct  1083  EGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVR--TPQGNQETHFLW  1140

Query  1122  EGFRLLQARQADRTETYLYDPTIWWSPLARITQQPGAPDGDIRWFNTELNGAPLEMTDAE  1181
             +G+RLLQ+R  +  +TY YDP    +PLA I ++ G  ++ + W++T+LNG+P E+T+A+
Sbjct  1141  QGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSPQEVTNAQ  1198

Query  1182  GAVRWSGDYGSFGAINGQTQDSEGLRH--GKPVES--QSLRYAGQYADEETGLHYNLFRY  1237
             G + WSG+YG FG +   T++++++++  +KP+    Q+LRYAGQY D+ETGLHY  +RY
Sbjct  1199  GEMVWSGQYGVFGQV---TRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTTYRY  1255

Query  1238  YDPTVGRFTTQDPIGLAGGLNLYAYAPNPLGWVDPLGLA  1276
             Y P VGRF T DPIGLAGGLNLY YAPNPLGW+DP GLA
Sbjct  1256  YAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

33) YpsIP31758_0330 in NC_009708


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  660 bits (2496),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1260 (41%), Positives = 763/1260 (61%), Gaps = 41/1260 (3%)

Query  73    SVGEKIGSMCHHD-------VGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEG  125
             ++GEK    C +         G I TGS NV+ NSK AA   LS+V+C  D A Q++A+G
Sbjct  71    ALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKA-QQVAQG  129

Query  126   SSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGGGRVQYLDIKREISDEMRDLSEKLFI  185
             SS++FIN+ +A R +DKTTCDA +  +S+NV +GGG    L I  EI+D    +S+   +
Sbjct  130   SSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMF  189

Query  186   VAGLAGGIFGAAKQAGCFGLKCL-SKIALGE-MAGAAAGYGLEKGVGAIAGYFGYPVDVI  243
              AGL +  FG+A   G  +++ L +K++ ++ +A  A   +    + ++ G +  PVDV 
Sbjct  190   AAGLIS--FGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVT  247

Query  244   SGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVY  303
             SGQK+L +E D+ DF L G +PL W R Y S     G LG+GW+L WE +L + DD+I+ 
Sbjct  248   SGQKFLNDE-DERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILW  306

Query  304   QNDEGREIVFPLIKRGERYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLA  363
             +N  G  I FP I  G++ F P ++ WL + E +   I  + E  + +  F   G+A LA
Sbjct  307   RNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLA  366

Query  364   SLEDINGHALYFFYDDIGQLKKISTTSGYGVYCQY--EKGRLVSVACVKGGTPGTLVRYQ  421
             ++ D  G+   F Y+D  Q+  I+ T+G ++ C+Y  E+ RL +V     +      RYQ
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  422   YNEQHQLVSVTNREGQITRQFGY---HGHLINKLADVRGLECRYTWADIGGTPRITHSAT  478
             YNE  QL +V +R++ + R+FG    HG L+    +V GL C Y W +I++   +++  T
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWH-ENVAGLRCDYQWQEIDDIWCVAEQHT  485

Query  479   NLGEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPV  538
               G+  ++ YD + +Q T +  + G  A W  + QH ++ Y D  +    ++ +    P 
Sbjct  486   CEGDGYRLAYDEERHQRT-ATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPT  544

Query  539   RVVLAGERTLVLVYDALARPIQITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRT  598
                 +  +      D L+R + +TD+   ET+ +Y+RN+ R      PDG   + + D  
Sbjct  545   GYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  599   GRLLKENAPDGGVTLYHYPGASSL-PERITNAVGAQTHLGWERHGQLTEHTDCSGKLTRY  657
             GRLL+E    G  T Y YP + +L P+ IT+A+G+Q++L W ++GQLT  TDCSG+ T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  658   EYDIDGHLLTVIDAENHSTHYSYNRLGQPTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQ  717
              YD  G+LL   DA ++  +Y  + +G+ T V  +DG  EQ+  ++ G + +  +   + 
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  718   LHWRYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPD  777
              HW+Y++RGQ +S TDRL R  RYRYD +G++++LDN NGGQYHF + + G+L+EEQ PD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  778   NLVRRYRYGESGMLMALETTAPTVDDLTVS-RQVSFDYDAGGRMTQRLTGMSATRYDWDI  836
             +    Y Y   G    +   + + ++ + + +   + YDA GR+  R T    T Y+WD 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  837   MDRLLLAERVPTAVGEQAGIVGNGVRLAYDKAGHLLTESGDLGAVTYQWDPLHHLAALTL  896
             M+ LL A R PT  GE+ GI+ N V +  D  G++  E  +  A++Y+ D+L +L+ L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  897   PDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQ  956
             P+++ + WL+YG+GHVSAIR  D L+SEF RD LHRE  RTQGILTQ R+YD +GRR WQ
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  957   SAGSDAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERH  1016
             S+ S   T A    P QG +WR + +D   EL+   D  RG   Y YD EGRL  +   H
Sbjct  965   SSISSRLTEALT-TPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPH  1023

Query  1017  QLSVAEDFAYDNADNLLNLRKLPFDTVD-PLY---DTPVANNRLTQWQHYRFEYDAWGNM  1072
               S      YD ADN L    LP++T + + Y     P  +NRLT+W++ +++YDA GN+
Sbjct  1024  --SGQTTVHYDRADNAL---MLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNL  1078

Query  1073  TTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKSVTIKRGAEKTTR  1132
             + R  G R Q++ YD+DNRL+ A G G  G  +++Y+YDALGRR+ K V   +G +    
Sbjct  1079  SERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQ----  1134

Query  1133  QTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPL  1192
             +T+F+WQGLRLLQ +  +++ TY YDPNE+YTPLA +++R GE    +Y +HTD+NG+P 
Sbjct  1135  ETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDT--LYWYHTDLNGSPQ  1192

Query  1193  DVTDGEGKHRWSGKYHAWGKVTRQNVSDPRQST--VSRFAQPLRYPGQYSDDETGLHYNT  1250
             +VT+++G   WSG+Y   G+VTRQ  +  R+ +  +++F QPLRY+GQY DDETGLHY T
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTT  1252

Query  1251  FRYYDPEIGRFSTQDPIGLAGGVNLYQYGPNPLTWIDPWGYTGTYIFTDGVVSYIGKGPL  1310
             +RYY PE+GRF T DPIGLAGG+NLYQY+PNPL WIDPWG +G+   T   ++Y G +++
Sbjct  1253  YRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAGS-PTTATHITYQGIDAI  1311

34) YPK_0403 in NC_010465


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  660 bits (2494),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1242 (41%), Positives = 755/1242 (61%), Gaps = 40/1242 (3%)

Query  73    SVGEKIGSMCHHD-------VGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEG  125
             ++GEK    C +         G I TGS NV+ NSK AA   LS+V+C  D A Q++A+G
Sbjct  71    ALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKA-QQVAQG  129

Query  126   SSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGGGRVQYLDIKREISDEMRDLSEKLFI  185
             SS++FIN+ +A R +DKTTCDA +  +S+NV +GGG    L I  EI+D    +S+   +
Sbjct  130   SSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMF  189

Query  186   VAGLAGGIFGAAKQAGCFGLKCL-SKIALGE-MAGAAAGYGLEKGVGAIAGYFGYPVDVI  243
              AGL +  FG+A   G  +++ L +K++ ++ +A  A   +    + ++ G +  PVDV 
Sbjct  190   AAGLIS--FGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVT  247

Query  244   SGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVY  303
             SGQK+L +E D+ DF L G +PL W R Y S     G LG+GW+L WE +L + DD+I+ 
Sbjct  248   SGQKFLNDE-DERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILW  306

Query  304   QNDEGREIVFPLIKRGERYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLA  363
             +N  G  I FP I  G++ F P ++ WL + E +   I  + E  + +  F   G+A LA
Sbjct  307   RNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLA  366

Query  364   SLEDLNGHALYFSYDDIGQLKKISTTSGYGVYCQY--EKGRLVSVACVKGGTPGTLVRYQ  421
             ++ D  G+   F Y+D  Q+  I+ T+G ++ C+Y  E+ RL +V     +      RYQ
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  422   YNEQHQLVSVTNREGQITRQFGY---HGHLINKLADVRGLECRYTWADIGGTPRITHSAT  478
             YNE  QL +V +R++ + R+FG    HG L+    +V GL C Y W +I++   +++  T
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWH-ENVAGLRCDYQWQEIDDIWCVAEQHT  485

Query  479   NLGEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPV  538
               G+  ++ YD + +Q T +  + G  A W  + QH ++ Y D  +    ++ +    P 
Sbjct  486   CEGDGYRLAYDEERHQRT-ATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPT  544

Query  539   RVVLAGERTLVLVYDALARPIQITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRT  598
                 +  +      D L+R + +TD+   ET+ +Y+RN+ R      PDG   + + D  
Sbjct  545   GYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  599   GRLLKENAPDGGVTLYHYPGASSL-PERITNAVGAQTHLGWERHGQLTEHTDCSGKLTRY  657
             GRLL+E    G  T Y YP + +L P+ IT+A+G+Q++L W ++GQLT  TDCSG+ T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  658   EYDIDGHLLTVIDAENHSTHYSYNRLGQPTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQ  717
              YD  G+LL   DA ++  +Y  + +G+ T V  +DG  EQ+  ++ G + +  +   + 
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  718   LHWRYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPD  777
              HW+Y++RGQ +S TDRL R  RYRYD +G++++LDN NGGQYHF + + G+L+EEQ PD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  778   NLVRRYRYGESGMLMALETTAPTVDDLTVS-RQVSFDYDAGGRMTQRLTGMSATRYDWDI  836
             +    Y Y   G    +   + + ++ + + +   + YDA GR+  R T    T Y+WD 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  837   MDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGAVTYQWDPLHHLAALTL  896
             M+ LL A R PT  GE+ GI+ + V +  D  G++  E  +  A++Y+ D+L +L+ L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  897   PDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQ  956
             P+++ + WL+YG+GHVSAIR  D L+SEF RD LHRE  RTQGILTQ R+YD +GRR WQ
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  957   SAGSDAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERH  1016
             S+ S   T A    P QG +WR + +D   EL+   D  RG   Y YD EGRL  +   H
Sbjct  965   SSISSRLTEALT-TPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPH  1023

Query  1017  QLSVAEDFAYDNADNLLNLRKLPFDTVD-PLY---DTPVANNRLTQWQHYRFEYDAWGNI  1072
               S      YD ADN L    LP++T + + Y     P  +NRLT+W++ +++YDA GN+
Sbjct  1024  --SGQTTVHYDRADNAL---MLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNL  1078

Query  1073  TTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKSVTIKRGAEKTTR  1132
             + R  G R Q++ YD+DNRL+ A G G  G  +++Y+YDALGRR+ K V   +G +    
Sbjct  1079  SERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQ----  1134

Query  1133  QTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPL  1192
             +T+F+WQGLRLLQ +  +++ TY YDPNE+YTPLA +++R G  E  +Y +HTD+NG+P 
Sbjct  1135  ETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYG--EDTLYWYHTDLNGSPQ  1192

Query  1193  DVTDGEGKHRWSGKYHAWGKVTRQNVSDPRQST--VSRFAQPLRYPGQYSDDETGLHYNT  1250
             +VT+++G   WSG+Y   G+VTRQ  +  R+ +  +++F QPLRY+GQY DDETGLHY T
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTT  1252

Query  1251  FRYYDPEIGRFSTQDPIGLAGGVNLYQYGPNPLGWVDPWGLA  1292
             +RYY PE+GRF T DPIGLAGG+NLYQY+PNPLGW+DPWGLA
Sbjct  1253  YRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLA  1294

35) YPTB3621 in NC_006155


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1243 (41%), Positives = 752/1243 (61%), Gaps = 40/1243 (3%)

Query  73    SVGEKIGSMCHHD-------VGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEG  125
             ++GEK    C +         G I TGS NV+ NSK AA   LS+V+C  D A Q++A+G
Sbjct  71    ALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKA-QQVAQG  129

Query  126   SSNIFINNKAAVRLEDKTTCDAVVDSASSNVTFGGGRVQYLDIKREISDEMRDLSEKLFI  185
             SS++FIN  +A R +DKTTCDA +  +S+NV +GGG    L I  EI+D    +S+   +
Sbjct  130   SSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMF  189

Query  186   VAGLAGGIFGAAKQAGCFGLKCL-SKIALGE-MAGAAAGYGLEKGVGAIAGYFGYPVDVI  243
              AGL +  FG+A   G  +++ L +K++ ++ +A  A   +    + ++ G +  PVDV 
Sbjct  190   AAGLIS--FGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVT  247

Query  244   SGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVY  303
             SGQK+L +E D+ DF L G +PL W R Y S     G LG+GW+L WE +L + DD+I+ 
Sbjct  248   SGQKFLNDE-DERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILW  306

Query  304   QNDEGREIVFPLIKRGERYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLA  363
             +N  G  I FP I  G++ F P ++ WL + E +   I  + E  + +  F   G+A LA
Sbjct  307   RNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLA  366

Query  364   SLEDLNGHALYFFYDDIGQLKKISTTSGYGVYCQY--EKGRLVSVACVKGGTPGTLVRYQ  421
             ++ D  G+   F Y+D  Q+  I+ T+G ++ C+Y  E+ RL +V     +      RYQ
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  422   YNEQHQLVSVTNREGQITRQFGY---HGHLINKLADVRGLECRYTWADIGGTPRITHSAT  478
             YNE  QL +V +R++ + R+FG    HG L+    +V GL C Y W +I++   +++  T
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWH-ENVAGLRCDYQWQEIDDIWCVAEQHT  485

Query  479   NLGEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPV  538
               G+  ++ YD + +Q T +  + G  A W  + QH ++ Y D  +    ++ +    P 
Sbjct  486   CEGDGYRLAYDEERHQRT-ATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPT  544

Query  539   RVVLAGERTLVLVYDALARPIQITDPLKRETHIDYHRNSLRVVRRQYPDGQVWKGEYDRT  598
                 +  +      D L+R + +TD+   ET+ +Y+RN+ R      PDG   + + D  
Sbjct  545   GYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  599   GRLLKENAPDGGVTLYHYPGASSL-PERITNAVGAQTHLGWERHGQLTEHTDCSGKLTRY  657
             GRLL+E    G  T Y YP + +L P+ IT+A+G+Q++L W ++GQLT  TDCSG+ T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  658   EYDIDGHLLTVIDAENHSTHYSYNRLGQPTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQ  717
              YD  G+LL   DA ++  +Y  + +G+ T V  +DG  EQ+  ++ G + +  +   + 
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  718   LHWRYNLRGQPVSFTDRLQREYRYRYDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPD  777
              HW+Y++RGQ +S TDRL R  RYRYD +G++++LDN NGGQYHF + + G+L+EEQ PD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  778   NLVRRYRYGESGMLMALETTAPTVDDLTVS-RQVSFDYDAGGRMTQRLTGMSATRYDWDI  836
             +    Y Y   G    +   + + ++ + + +   + YDA GR+  R T    T Y+WD 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  837   MDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGAVTYQWDPLHHLAALTL  896
             M+ LL A R PT  GE+ GI+ + V +  D  G++  E  +  A++Y+ D+L +L+ L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  897   PDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQ  956
             P+++ + WL+YG+GHVSAIR  D L+SEF RD LHRE  RTQGILTQ R+YD +GRR WQ
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  957   SAGSDAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERH  1016
             S+ S   T A    P QG +WR + +D   EL+   D  RG   Y YD EGRL  +   H
Sbjct  965   SSISSRLTEALT-TPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPH  1023

Query  1017  QLSVAEDFAYDNADNLLNLRKLPFDTVD-PLY---DTPVANNRLTQWQHYRFEYDAWGNM  1072
               S      YD ADN L    LP++T + + Y     P  +NRLT+W++ +++YDA GN+
Sbjct  1024  --SGQTTVHYDRADNAL---MLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNL  1078

Query  1073  TTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKSVTIKRGAEKTTR  1132
             + R  G R Q++ YD+DNRL+ A G G  G  +++Y+YDALGRR+ K V   +G +    
Sbjct  1079  SERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQ----  1134

Query  1133  QTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPL  1192
             +T+F+WQGLRLLQ +  +++ TY YDPNE+YTPLA +++R GE    +Y +HTD+NG+P 
Sbjct  1135  ETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDT--LYWYHTDLNGSPQ  1192

Query  1193  DVTDGEGKHRWSGKYHAWGKVTRQNVSDPRQ--STVSRFAQPLRYPGQYSDDETGLHYNT  1250
             +VT+++G   WSG+Y   G+VTRQ  +  R+    +++F QPLRY+GQY DDETGLHY T
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTT  1252

Query  1251  FRYYDPEIGRFSTQDPIGLAGGVNLYQYGPNPLGWVDPLGLAN  1293
             +RYY PE+GRF T DPIGLAGG+NLYQY+PNPLGW+DP GLA 
Sbjct  1253  YRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWGLAG  1295

36) YpsIP31758_0333 in NC_009708


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/1240 (41%), Positives = 747/1240 (61%), Gaps = 40/1240 (3%)

Query  73    SVGEKIGSMCHHD-------VGQITTGSKNVKVNSKRAAHVELSTVACKDDSAIQRMAEG  125
             ++GEK    C +         G I TGS NV+ NSK AA   LS+V+C  D A Q++A+G
Sbjct  71    ALGEKARDACVDAGKNSLSPSGAIVTGSANVRTNSKAAAVATLSAVTCDKDKA-QQVAQG  129

Query  126   SSNIFINSKAAVRLEDKTTCDAVVDSASSNVTFGGGRVQYLDIKREISDEMRDLSEKLFI  185
             SS++FIN+ +A R +DKTTCDA +  +S+NV +GGG    L I  EI+D    +S+   +
Sbjct  130   SSSVFINGLPAARRNDKTTCDASIMVGSTNVFIGGGTETTLPITSEIPDWAYTVSDLTMF  189

Query  186   VAGLAGGIFGAAKQAGCFGLKCLSKIALGEMAGAAAGYGLEK--GVGAIAGYFGYPVDVI  243
              AGL +  FG+A   G  +++ L     G    A  +  L     + ++ G +  PVDV 
Sbjct  190   AAGLIS--FGGAVSRGPGAVQKLFAKLPGADKIAKIACRLAPLAIILPVVGILTNPVDVT  247

Query  244   SGQKLLTGEGDDTDFILPGIFPLHWSRIYRSENHHVGALGQGWSLVWERSLRKEDDSIVY  303
             SGQK+L +E D+ DF L G +PL W R Y S     G LG+GW+L WE +L + DD+I+ 
Sbjct  248   SGQKFLNDE-DERDFTLDGELPLFWQRRYLSSYVYEGVLGRGWNLFWESALSRVDDGILW  306

Query  304   QNDEGREIVFPLIKRGERYFSPTEHIWLARTERDTYAISSPFETCFIFEAFSEAGVAKLA  363
             +N  G  I FP I  G++ F P ++ WL + E +   I  + E  + +  F   G+A LA
Sbjct  307   RNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCIRDAGEWVYHYGKFDAQGLAPLA  366

Query  364   SLEDLNGHALYFSYDDIGQLKKISTTSGYGVYCQY--EKGRLVSVACVKGGTPGTLVRYQ  421
             ++ D  G+   F Y+D  Q+  I+ T+G ++ C+Y  E+ RL +V     +      RYQ
Sbjct  367   NITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYHPERHRLTAVWQQTPDGDIIRARYQ  426

Query  422   YNEQHQLVSVTNREGQITRQFGY---HGHLINKLADVRGLECRYTWADIGGTPRITHSAT  478
             YNE  QL +V +R++ + R+FG    HG L+    +V GL C Y W +I++   +++  T
Sbjct  427   YNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWH-ENVAGLRCDYQWQEIDDIWCVAEQHT  485

Query  479   NLGEQWQFDYDIDNQQTTLTDLNTGQTACWGYNAQHLITDYRDFDGGKYAFDYNDLNMPV  538
               G+  ++ YD + +Q T +  + G  A W  + QH ++ Y D  +    ++ +    P 
Sbjct  486   CEGDGYRLAYDEERHQRT-ATYQDGSQAVWILDEQHRVSRYTDRTAHECQLQWDTAGQPT  544

Query  539   RVVLAGERTLVLAYDALARPIQITDPLKREIHIDYHRNSLRVMRRQYPDGQVWKGEYDRT  598
                 +  +      D L+R + +TD+   E + +Y+RN+ R      PDG   + + D  
Sbjct  545   GYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERNTDRQTFVFWPDGTQERQQWDAQ  604

Query  599   GRLLKENAPDGGVTRYHYPGASSL-PERITNAVGAQTHFGWERHGQLTEHTDCSGKLTRY  657
             GRLL+E    G  T+Y YP + +L P+ IT+A+G+Q+++ W ++GQLT  TDCSG+ T+ 
Sbjct  605   GRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQLLWSQQGQLTGYTDCSGQPTQW  664

Query  658   EYDIDGHLLTVIDAENHATHYSYNRLGQLTGVRYADGRKEQLRYNAQGLVEQFTDPVGRQ  717
              YD  G+LL   DA ++  +Y  + +G+LT V  +DG  EQ+  ++ G + +  +   + 
Sbjct  665   RYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGSTEQFDWSPAGQLVRHQQGHNQP  724

Query  718   LHWRYNLRGQPVSFTDRLqrqyryryDCHGQMIELDNANGGQYHFRWSSGGQLVEEQYPD  777
              HW+Y++RGQ +S TDRL R  RYRYD +G++++LDN NGGQYHF + + G+L+EEQ PD
Sbjct  725   RHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDNDNGGQYHFNRDAEGRLLEEQRPD  784

Query  778   NLVRRYRYGESGMLMALETTAPTVDDLTVS-RQVSFDYDAGGRMTQRLTGMSATRYDWDI  836
             +    Y Y   G    +   + + ++ + + +   + YDA GR+  R T    T Y+WD 
Sbjct  785   DTRYSYTYNADGQATDITQRGLSENHASPPEKPTRLTYDAVGRLIARHTLTEQTCYQWDK  844

Query  837   MDRLLLAERVPTAVGEQAGIVGHGVRLAYDKAGHLLTESGDLGAVTYQWDPLHHLAALTL  896
             M+ LL A R PT  GE+ GI+ + V +  D  G++  E  +  A++Y+ D+L +L+ L L
Sbjct  845   MGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQEHNGAEALAYHYDALGNLTRLEL  904

Query  897   PDGQTLSWLRYGAGHVSAIRHGDTLISEFSRDNLHREVSRTQGILTQYRDYDAMGRRLWQ  956
             P+++ + WL+YG+GHVSAIR  D L+SEF RD LHRE  RTQGILTQ R+YD +GRR WQ
Sbjct  905   PNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRETRRTQGILTQQRQYDVLGRRRWQ  964

Query  957   SAGSDAPTVAADLLPRQGDIWRKFSFDTAGELSMATDFIRGEQQYRYDAEGRLTDSRERH  1016
             S+ S   T A    P QG +WR + +D   EL+   D  RG   Y YD EGRL  +   H
Sbjct  965   SSISSRLTEALT-TPEQGILWRAYHYDELHELAAVEDSNRGMLSYGYDEEGRLRSTVSPH  1023

Query  1017  QLSVAEDFAYDNADNLLNLRKLPFDTVD-PLY---DTPVANNRLTQWQHYRFEYDAWGNM  1072
               S      YD ADN L    LP++T + + Y     P  +NRLT+W++ +++YDA GN+
Sbjct  1024  --SGQTTVHYDRADNAL---MLPLQTPESSPYARSSQPYCDNRLTRWEQWQYHYDAFGNL  1078

Query  1073  TTRHAGGRMQHFAYDDDNRLLRAWGTGPLGEHDSHYRYDALGRRIHKSVTIKRGAEKTTR  1132
             + R  G R Q++ YD+DNRL+ A G G  G  +++Y+YDALGRR+ K V   +G +    
Sbjct  1079  SERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDALGRRLSKVVRTPQGNQ----  1134

Query  1133  QTDFIWQGLRLLQEQHADGNATYIYDPNESYTPLARVDQRHGETESQVYYFHTDINGTPL  1192
             +T+F+WQGLRLLQ +  +++ TY YDPNE+YTPLA +++R GE    +Y +HTD+NG+P 
Sbjct  1135  ETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYGEDT--LYWYHTDLNGSPQ  1192

Query  1193  DVTDGEGKHRWSGKYHAWGKVTRQNVSDPRQST--VSRFAQPLRYPGQYSDDETGLHYNT  1250
             +VT+++G   WSG+Y   G+VTRQ  +  R+ +  +++F QPLRY+GQY DDETGLHY T
Sbjct  1193  EVTNAQGEMVWSGQYGVFGQVTRQTDAMWRNVSKPLGQFRQPLRYAGQYLDDETGLHYTT  1252

Query  1251  FRYYDPEIGRFSTQDPIGLAGGINLYQYGPNPLGWVDPLG  1290
             +RYY PE+GRF T DPIGLAGG+NLYQY+PNPLGW+DP G
Sbjct  1253  YRYYAPEVGRFITPDPIGLAGGLNLYQYAPNPLGWIDPWG  1292

37) W5S_0365 in NC_017845


> NC_009708_P1|8|G7|153947628|YP_001402646.1|Yersinia_pseudotuberculosis_IP_31758|+|6506..10765|-|YpsIP31758_3692|RHS/YD 
repeat-containing 
protein
Length=1419

 Score =  553 bits (2087),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 437/1003 (44%), Positives = 645/1003 (65%), Gaps = 43/1003 (4%)

Query  1     MGKGWSLFWETTLTCYQDGLVWRAPSGDLISFPFVPVGQRSYCPAEKRWLEHHQDESWSV  60
             +G+GW+LFWE++L+  +DG++WR   GD I+FP +P G++++CP ++ WL H +D  W +
Sbjct  285   LGRGWNLFWESALSRVDDGILWRNTYGDYIPFPDIPAGHQTFCPEQQCWLIHLEDGRWCI  344

Query  61    YGPDGEVWAY--TALSPQGKAVLARIAEPCGHDILFFWNDDDTLQALTDSAGRHLTCRYR  118
                D+  W Y    + +QG A LA I++  G+   F  ND++ + ++T+++G  L C Y+
Sbjct  345   --RDAGEWVYHYGKFDAQGLAPLANITDNVGNRQSFHYNDQQQMVSITGTGGLSLRCDYH  402

Query  119   DGR--LDSVWL---DESTCLVHYTYNAHRQLItvtgrggsvrrrFTWHDD-GLMASHEEA  172
               R  L +VW    D      +Y YN   QL +V  R+++V RRF W +D GL+  HE+ 
Sbjct  403   PERHRLTAVWQQTPDGDIIRARYQYNESGQLAAVQHRDDTVVRRFGWGEDHGLLLWHENV  462

Query  173   SGLLSEYQWQEIADLPRVVAYRNSAGEQLTLEYDFAGQRRTARREDGLIAQWVLDDEGHV  232
             +GL  +YQWQEI D+  V   +   G+   L YD   ++RTA  +DG  A W+LD++ +V
Sbjct  463   AGLRCDYQWQEIDDIWCVAEQHTCEGDGYRLAYDEERHQRTATYQDGSQAVWILDEQHRV  522

Query  233   THFTDYDGRETTLS-YVDGELSGVILPGGASRHTTWDDYGRLLSETDPLGRETGYQWYRL  291
             +++TD  ++E  L     G+ +G   P G  R+  WD+ GRL+S TD+ G ET  Q  R 
Sbjct  523   SRYTDRTAHECQLQWDTAGQPTGYRSPRGHQRQCQWDELGRLVSVTDANGAETRWQYERN  582

Query  292   TGHITRVTYPDGSREQMQYDDRNRLVEEIDARGNSTRYQYPTAQESLPDSITDALGGTVT  351
             T++ T V  PDG++E+ Q D + RL++E D  G+ST+Y YP ++  LPDSITDALGG   
Sbjct  583   TDRQTFVFWPDGTQERQQWDAQGRLLQETDRLGQSTHYTYPHPRTLLPDSITDALGGQSQ  642

Query  352   LVWNRQGLLTARTDCSGQCSTFEYDPDGQLLASVDAEGHTTRREWDACGHLTSVIYPDGR  411
             L+W++QG LT+ TDCSGQ +   YD+ GQLL   DA  +  R +WD+ G+LT V  PDG 
Sbjct  643   LLWSQQGQLTGYTDCSGQPTQWRYDALGQLLLRRDALQQEIRYHWDPVGRLTKVTLPDGS  702

Query  412   RETLHWNARGQLQAWRDAQNSEVRWQYNDLGQPVSVTDRLRRTTRWHYDarglllrleng  471
              E ++W++ GQL   ++++N   +W+Y+  GQ +S TDRL R  R +YDA G L++L+N+
Sbjct  703   TEQFDWSPAGQLVRHQQGHNQPRHWHYSVRGQILSTTDRLSRVIRYRYDAEGRLVHLDND  762

Query  472   ngaaYQFGYDAVGRLVNEQRVDGVELTFHYDAAGHLCQRSQRG----HAANDEAISHIYQ  527
             NG+ Y+F  DA GRL++EQR D+   ++ Y+A G+  + +QRG    HA+  E  +++  
Sbjct  763   NGGQYHFNRDAEGRLLEEQRPDDTRYSYTYNADGQATDITQRGLSENHASPPEKPTRL-T  821

Query  528   HDAAGQLVRREHAHAVFHYQHSERGQLVSLKREPTGEGLALGLTADEVRLTYDAAGDLSG  587
              DA G+L+ R+       YQ    G+L+S  R PT +G  LG+ ++ V +  DA G ++ 
Sbjct  822   YDAVGRLIARHTLTEQTCYQWDKMGNLLSAIRTPTEQGEKLGILTNTVTFERDALGRITQ  881

Query  588   EHGSEGDIGYTRDALGNVSALSLPDGDTLRWLRYGSGHVSAVKFNHQVVSEFTRDRLHRE  647
             EH +   ++Y  DALGN++ L LP++D ++WL+YGSGHVSA++FN+Q+VSEF RD LHRE
Sbjct  882   EHNGAEALAYHYDALGNLTRLELPNDDHFQWLHYGSGHVSAIRFNDQLVSEFERDALHRE  941

Query  648   ISRTQGRRTQQREYDSLGR---LTSQRSGLWD-VAEPEQQLLSRALRYTASGELASVRDG  703
               RTQG  TQQR+YD LGR    +S  S L + ++ PEQ +L RA +Y    ELA+V D+
Sbjct  942   TRRTQGILTQQRQYDVLGRRRWQSSISSRLTEALTTPEQGILWRAYHYDELHELAAVEDS  1001

Query  704   LRGDVQYDYDAEGRLLKRISVHWQVHHRAYGYDAADN-----LQDSGHSP---SARPLSD  755
              RG + Y+YD EGRL   +S H    + +  YD ADN     LQ +  SP   S++P  D
Sbjct  1002  NRGMLSYGYDEEGRLRSTVSPH--SGQTTVHYDRADNALMLPLQTPESSPYARSSQPYCD  1059

Query  756   NRLLNWRHLWN-QYDGQGNLIRRREGSTEQFYRYDADNRLVEARGRGPQGEFVARYGYDA  814
             NRL  W + W+ +YD+ GNL  R EG   Q YRYD+DNRLV A+G G +G F A+Y YDA
Sbjct  1060  NRLTRWEQ-WQYHYDAFGNLSERLEGYRTQRYRYDGDNRLVGAKGDGQKGLFEAQYHYDA  1118

Query  815   LGRRTRKTVTWGDNRKQEETRFLWEGFRLLQARHADRTESYVYDPTIWWSPLARITQQPG  874
             LGRR  K V     + ++ET+FLW+G+RLLQ+R  +  ++Y YDP    +PLA I ++ G
Sbjct  1119  LGRRLSKVVR--TPQGNQETHFLWQGLRLLQSRTDESQQTYCYDPNEAYTPLACIERRYG  1176

Query  875   GRDGDIRWFNTELNGAPLEMTDAEGAVRWSGDYGSFGAVNGQTQDSEGLRH--GKPVES-  931
               ++ + W++T+LNG+P E+T+A+G + WSG+YG FG V   T++++++++  +KP+   
Sbjct  1177  --EDTLYWYHTDLNGSPQEVTNAQGEMVWSGQYGVFGQV---TRQTDAMWRNVSKPLGQF  1231

Query  932   -QPLRYAGQYADEETGLHYNLFRYYDPTVGRFTTQDPIGLAGG  973
              QPLRYAGQY D+ETGLHY  +RYY P VGRF T DPIGLAGG
Sbjct  1232  RQPLRYAGQYLDDETGLHYTTYRYYAPEVGRFITPDPIGLAGG  1274