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Homologs of hsdS gene of NC_009641_P2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hsdS
( YP_186689.1 )

type I restriction-modification enzyme, S subunit, EcoA family protein

NC_002951
(Staphylococcus aureus COL)

2e-176

100

2) hsdS
( YP_494442.1 )

type I restriction-modification enzyme, S subunit

NC_007793
(Staphylococcus aureus FPR3757)

2e-176

100

3) BN843_18130
( YP_007868878.1 )

Type I restriction-modification system,specificity subunit S

NC_021059
(Staphylococcus aureus M1)

2e-176

100

4) hsdS
( YP_001332733.1 )

type I restriction modification system, site specificity determination subunit

NC_009641
(Staphylococcus aureus Newman)

2e-176

100

5) SAT0131_01927
( YP_005753066.1 )

Type I restriction modification system, site specificity determination subunit

NC_017347
(Staphylococcus aureus T0131)

2e-176

100

6) hsdS2
( YP_001575681.1 )

type I site-specific deoxyribonuclease specificity subunit

NC_010079
(Staphylococcus aureus TCH1516)

2e-176

100

7) SATW20_18040
( YP_005731792.1 )

type I restriction-modification system specificity protein

NC_017331
(Staphylococcus aureus TW20)

2e-176

100

8) SAOUHSC_01932
( YP_500433.1 )

type I restriction-modification system subunit S

NC_007795
(Staphylococcus aureus NCTC 8325)

5e-176

9) SAVC_08270
( YP_005291247.1 )

type I restriction-modification enzyme, S subunit, EcoA family protein

NC_016912
(Staphylococcus aureus VC40)

5e-176

10) SAS1731
( YP_043847.1 )

restriction modification DNA specificity protein

NC_002953
(Staphylococcus aureus MSSA476)

6e-168

11) hsdS
( NP_646567.1 )

specificity determinant HsdS

NC_003923
(Staphylococcus aureus MW2)

6e-168

12) hsdS
( YP_008168957.1 )

Type I restriction enzyme S protein

NC_021670
(Staphylococcus aureus Bmb9393)

2e-138

13) SAS0395
( YP_042521.1 )

restriction and modification system specificity protein

NC_002953
(Staphylococcus aureus MSSA476)

9e-102

14) hsdS
( NP_645210.1 )

specificity determinant HsdS

NC_003923
(Staphylococcus aureus MW2)

9e-102

15) SA2981_1762
( YP_005742511.1 )

Type I restriction-modification system, specificity subunit S

NC_017340
(Staphylococcus aureus 04-02981)

2e-98

16) ECTR2_1640
( YP_005750370.1 )

type I restriction modification DNA specificity domain protein

NC_017343
(Staphylococcus aureus ECT-R 2)

2e-98

17) hsdS
( YP_003282709.1 )

type I restriction-modification enzyme, S subunit

NC_013450
(Staphylococcus aureus ED98)

2e-98

18) SaurJH1_1894
( YP_001317019.1 )

restriction modification system DNA specificity subunit

NC_009632
(Staphylococcus aureus JH1)

2e-98

19) SaurJH9_1859
( YP_001247222.1 )

restriction modification system DNA specificity subunit

NC_009487
(Staphylococcus aureus JH9)

2e-98

20) SA1625
( NP_374914.1 )

specificity determinant HsdS

NC_002745
(Staphylococcus aureus N315)

2e-98

21) SAHV_1792
( YP_001442382.1 )

specificity determinant HsdS

NC_009782
(Staphylococcus aureus Mu3)

6e-98

22) SAV1807
( NP_372331.1 )

specificity determinant HsdS

NC_002758
(Staphylococcus aureus Mu50)

6e-98

23) bcf_22260
( YP_005121085.1 )

Type I restriction-modification system, specificity subunit S

NC_016779
(Bacillus cereus F837/76)

3e-64

24) SAKOR_00416
( YP_008490600.1 )

Type I restriction-modification system specificity subunit

NC_022226
(Staphylococcus aureus CN1)

2e-51

• Sequence Alignments

1) hsdS in NC_002951


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

2) BN843_18130 in NC_021059


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

3) hsdS in NC_009641


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

4) SAT0131_01927 in NC_017347


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

5) SATW20_18040 in NC_017331


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

6) hsdS in NC_007793


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

7) hsdS2 in NC_010079


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  611 bits (2309),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 399/399 (100%), Positives = 399/399 (100%), Gaps = 0/399 (0%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

8) SAOUHSC_01932 in NC_007795


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  610 bits (2304),  Expect = 5e-176, Method: Compositional matrix adjust.
 Identities = 398/399 (99%), Positives = 398/399 (99%), Gaps = 0/399 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

9) SAVC_08270 in NC_016912


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  610 bits (2304),  Expect = 5e-176, Method: Compositional matrix adjust.
 Identities = 398/399 (99%), Positives = 398/399 (99%), Gaps = 0/399 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399
            EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

10) SAS1731 in NC_002953


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  583 bits (2202),  Expect = 6e-168, Method: Compositional matrix adjust.
 Identities = 382/383 (99%), Positives = 382/383 (99%), Gaps = 0/383 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRI  383
            EQDKVSALLKSIDNKMNNQMNRI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRI  383

11) hsdS in NC_003923


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  583 bits (2202),  Expect = 6e-168, Method: Compositional matrix adjust.
 Identities = 382/383 (99%), Positives = 382/383 (99%), Gaps = 0/383 (0%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  KFFSKLDRQIeleeqklellqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240
            KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300
            ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA
Sbjct  241  ENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIA  300

Query  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360
            NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT
Sbjct  301  NGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLT  360

Query  361  EQDKVSALLKSIDNKMNNQMNRI  383
            EQDKVSALLKSIDNKMNNQMNRI
Sbjct  361  EQDKVSALLKSIDNKMNNQMNRI  383

12) hsdS in NC_021670


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  485 bits (1828),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 319/320 (99%), Positives = 319/320 (99%), Gaps = 0/320 (0%)

Query  1    MKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSR  60
            MKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSR
Sbjct  80   MKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLKKEYYYNFFGQYLLSR  139

Query  61   KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFSKLDRQIeleeqklel  120
            KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFSKLDRQIELEEQKLEL
Sbjct  140  KGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFSKLDRQIELEEQKLEL  199

Query  121  lqqqkkGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIFENNRRKLITSSLREKGLYP  180
            LQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIFENNRRK ITSSLREKGLYP
Sbjct  200  LQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIFENNRRKPITSSLREKGLYP  259

Query  181  YYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIANGQYWVNNHAHVVKSNDHN  240
            YYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIANGQYWVNNHAHVVKSNDHN
Sbjct  260  YYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSSFIANGQYWVNNHAHVVKSNDHN  319

Query  241  LFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQ  300
            LFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQ
Sbjct  320  LFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQ  379

Query  301  MNRIELLKERKKGLLQKMFI  320
            MNRIELLKERKKGLLQKMFI
Sbjct  380  MNRIELLKERKKGLLQKMFI  399

13) SAS0395 in NC_002953


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  364 bits (1366),  Expect = 9e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  EFISKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285

Query  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338

Query  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398

Query  419  I  419
            I
Sbjct  399  I  399

14) hsdS in NC_003923


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  364 bits (1366),  Expect = 9e-102, Method: Compositional matrix adjust.
 Identities = 267/421 (64%), Positives = 326/421 (78%), Gaps = 24/421 (5%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGDLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQKKNVPELRFPGFEGEWEEKKLG+LTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVEIHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVE HANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  EFISKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDEEGKDYPDWKSKSIQE--IF  238
             F+SKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDE+G +YP+W +K I++  IF
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  239  ENKGGTALETEFNFDGNYKVISIGSYSINSTYNDQNIRVNKNKKTEKYILSKGDLAMVLN  298
            EN+   ++ + +   G Y      +Y     Y    I          Y++++ +  ++ +
Sbjct  241  ENNRRKPITSSLREKGLY------PY-----YGATGIIDY----VKDYLFNNEERLLIGE  285

Query  299  DKTKDGKIIGRSIFIDKDNQYIYNQRTERLIPFAENDNKFLWFLMNTDLIRNKIKGMMQG  358
            D +K G+ +  S FI  + QY    + +       +++  L F+MN  L  + +++ + G
Sbjct  286  DGAKWGQ-FETSSFIA-NGQY----WVNNHAHVVKSNDHNL-FFMNYYLNFKELRAFVTG  338

Query  359  ATQVYINYSSIKLISIQLPLLEEQQKIRGFLEVLSGITTKQLHKIDQLKERKKAFLQKMF  418
             +   +  +++  I++++P L EQ+K+ ++L  +     +Q+++I+ LKERKK++LQKMF
Sbjct  339  NAPAKLTHANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMF  398

Query  419  I  419
            I
Sbjct  399  I  399

15) SA2981_1762 in NC_017340


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

16) ECTR2_1640 in NC_017343


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

17) hsdS in NC_013450


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

18) SaurJH1_1894 in NC_009632


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

19) SaurJH9_1859 in NC_009487


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

20) SA1625 in NC_002745


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  352 bits (1322),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 325/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLTSSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+ +S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

21) SAHV_1792 in NC_009782


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 324/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLISSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+  S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

22) SAV1807 in NC_002758


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 324/415 (79%), Gaps = 22/415 (5%)

Query  1    MSNTQTKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60
            MSNTQ KNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIR  60

Query  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120
            NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI
Sbjct  61   NGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCI  120

Query  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180
            IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG
Sbjct  121  IRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIG  180

Query  181  QFFSkldqqieleeqklellqqqkkCYIQKIFSQELRFKDEEGNYYKGWNKKQLKDVLEF  240
            +FFSKLD+QIELEEQKLELLQQQKK Y+QKIF+QELRFKDE+G+ Y  W++K +KD++ F
Sbjct  181  KFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIKDIFIF  240

Query  241  SNKRTINENEYPVLISSRQ-GLILQSDYYKDRKTFAESNIGY---FILPKNHITYRSRSD  296
             N+R       P+  S R+ GL     YY      A + I+Y   +++ +++    +  +
Sbjct  241  ENNRRK-----PITSSLREKGLY---PYYG-----ATGIIDYVKDYLFNNEERLLIGEDG  287

Query  297  DGIFKFNLNLMIDVGI--ISKYYPVFKGIDANQYYLTLHLNYQLKKEYIKYATGTSQLVL  354
                +F+ +  I  G   +++   V K+ D N +++   LN+   KE   + TG +   L
Sbjct  288  AKWGQFETSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNF---KELRAFVTGNAPAKL  344

Query  355  SQKDLQNIKTKLPSYEEQQKIGDFFSEIDRLVEKQSSKVGRLKVRKKELLQKMFV  409
            ++ +L NI+ K+P   EQ+K++ ++  ID  +++Q +++  LK RKK LLQKMF+
Sbjct  345  THANLCNINLKIPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399

23) bcf_22260 in NC_016779


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  239 bits (890),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 179/404 (45%), Positives = 280/404 (70%), Gaps = 18/404 (4%)

Query  2    KNKRTPDIRFPGFTGEWEKCNLGNISTKIGSGKTPKGGNQNYKSEGIPLLRSQNIFNDKV  61
            ++K  P++RFPGF GEWE  +LGN++TKIGSGKTPKGG++NY + GIP+LRSQNI N+K+
Sbjct  5    QKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTPKGGSENYTNKGIPFLRSQNIRNGKL  64

Query  62   NFNDVVYITPEIDEDMANSRVQKGDVLLNITGASIGRSAVYEL-NHKANVNQHVSIIRPS  120
            N+ND+VYI+ +ID++M NSR   GDVLLNITGASIGR+A+  + +  AN+NQHV IIR  
Sbjct  65   NLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHVCIIRLK  124

Query  121  GEVNPYFIQLNITSEKGQKQIELNQAGGGREGLNFQQIAKMGFYFPALV-EQGKIGDFFI  179
             E    F+   + S KG+++I L Q+GG+REGLNF++IA++ ++ P++  EQ KIG FF 
Sbjct  125  KEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIFEEQQKIGKFFS  184

Query  180  QLDNTITLHQQELTTLKQAKQGFLQKMFPKEGESAPEVRFSGFTG----DWNEHKLCDVA  235
            +LD  I L++Q L  L+Q K+G++QK+F      + E+RF +  G    +W E+K+    
Sbjct  185  KLDRQIELEEQKLELLQQQKKGYMQKIF------TQELRFKDENGEEYPEW-ENKFIKDI  237

Query  236  DMFDNSRI-PVTASKRIKGTTPYYGANGVQDYVEGFT-HDGEFVLVAEDGAN-DLINYPV  292
             +F+N+R  P+T+S R KG  PYYGA G+ DYV ++  ++ E +L++EDGA+ + ++ + 
Sbjct  238  FIFENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAKWGQFETSS  297

Query  293  NYVNGKVWVNNHAHVISGRKSILNNLFLVARIKCMNISTYLVGGGRAKLNGETLKKIPIT  352
               NG+ WVNNHAHV+ +    L  +F+   ++  ++ +++ G + AKL    L +I + 
Sbjct  298  FIANGQYWVNNHAHVVKSNDHNL--FFMNYYLNFKELRAFVTGNAPAKLTHANLCNINLK  355

Query  353  IPSFKEQTKIGDFFKQLDDTIALHQRELDALKETKKAFLHKMFV  396
            IP + EQ K++ ++K +D+ +  +   ++ LKE KK++L+KMF+
Sbjct  356  IPCLTEQDKVSALLKSIDNKMNNQMNRIELLKERKKGLLQKMFI  399


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 58/220 (27%), Positives = 111/220 (51%), Gaps = 36/220 (16%)

Query  206  MFPKEGESAPEVRFSGFTGDWNEHKLCDVADMFDNSRIPVTASKRIKGTTPYYGANGV--  263
            M   +  + PE+RF+GF G+W+E KL +++  +++++ P       KG +  Y  +G+  
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKIGSGKTP-------KGGSENYTNKGIPF  53

Query  264  ---QDYVEGFTHDGEFVLVAEDGANDLINYPVNY--------------------VNGKVW  300
               Q+  +G  +  ++V ++ D  +++ N    Y                    V+    
Sbjct  54   LRSQNIRNGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHAN  113

Query  301  VNNHAHVISGRKSILNNLF---LVARIKCMNISTYLVGGGRAKLNGETLKKIPITIPS-F  356
            +N+H  +I  +K    N+F   L++R    +I     GG+R  LN   + ++ I  P+ F
Sbjct  114  LNQHVCIIRLKKEYYYNFFGQYLLSRKGKRKIFLAQSGGSREGLNFKEIANLKIFTPTIF  173

Query  357  KEQTKIGDFFKQLDDTIALHQRELDALKETKKAFLHKMFV  396
             EQ KIG FF +LD  I L+++ L+ L++ KK++++K+F 
Sbjct  174  EEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFT  213

24) SAKOR_00416 in NC_022226


> NC_009641_P2|8|G8|151221911|YP_001332733.1|Staphylococcus_aureus_subsp._aureus_str._Newman|-|9759..10958|hsdS|NWMN_1699|type 
I restriction modification system, site specificity determination 
subunit
Length=399

 Score =  196 bits (728),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 173/384 (46%), Positives = 253/384 (66%), Gaps = 24/384 (6%)

Query  1    MSNTQKKNVPELRFPGFEGEWEEKKLGEVA-KIYDGTHQTPK-----YTNEGIKFLSVEN  54
            MSNTQKKNVPELRFPGFEGEWEEKKLG+++ KI  G+ +TPK     YTN GI FL  +N
Sbjct  1    MSNTQKKNVPELRFPGFEGEWEEKKLGNLTTKI--GSGKTPKGGSENYTNKGIPFLRSQN  58

Query  55   IKT----LNSSKYISEEAFEKEFKIRPEFGDILM----TRIGDIGTPNIVSSNEKFAYYV  106
            I+     LN   YIS +  +   + R  +GD+L+    + IG  +  +IV ++ ++   V
Sbjct  59   IRNGKLNLNDLVYISKDIDDEMKNSRTYYGDVLLNITGASIGRTAINSIVETHANLNQHV  118

Query  107  SLALLKTKNLNSYFLKNLILSSSIQNELWRKTLHVAFPkkinkneigkikinYPKK--QE  164
             +  LK     ++F + L+   + ++ +     + + ++   +         +     +E
Sbjct  119  CIIRLKKEYYYNFFGQYLLSRKGKRKIF---LAQSGGSREGLNFKEIANLKIFTPTIFEE  175

Query  165  QQKIGQFFSKLDRQIeleeqklellqqqkkGYMQKIFSQELRFKDENGNDYPEWEERRFA  224
            QQKIG+FFSKLDRQIELEEQKLELLQQQKKGYMQKIF+QELRFKDENG++YPEWE++ + 
Sbjct  176  QQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFTQELRFKDENGEEYPEWENKFIK  235

Query  225  DIFKFHNKLRKPIKENLRVKGSYPYYGATGIIDYVDDFIFDG-NYLLIGEDGANIITRSA  283
            DIF F+N+ RKPI  +LR KG YPYYGATGIIDYV D++F+  + LLIGEDGA+   +  
Sbjct  236  DIFIFENNRRKPITSSLREKGLYPYYGATGIIDYVKDYLFNNEERLLIGEDGAK-WGQFE  294

Query  284  PLVYLVNGKFWVNNHAHILSPLNGNIQYLYQVAELVNYEKYNTGTAQPKLNIQNLKIISV  343
               ++ NG++WVNNHAH++ + + N+ ++    ++ +   + TG A +KL   NL  I++
Sbjct  295  TSSFIANGQYWVNNHAHVVKSNDHNLFFMNYYLNFKELRAFVTGNAPAKLTHANLCNINL  354

Query  344  VISTNLEEQQKIGSFLSKLDRQID  367
             I+  L EQ+K++++L  +D +++
Sbjct  355  KIPC-LTEQDKVSALLKSIDNKMN  377