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PAthogenisity Island DataBase (PAI DB)

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Homologs of ccrA4 gene of BK001539

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) BN843_350
( YP_007867114.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

0.0

100

2) SE0057
( NP_763612.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

100

3) SSP0036
( YP_300126.1 )

cassette chromosome recombinase A

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

4e-121

4) ccrA1
( YP_184952.1 )

cassette chromosome recombinase A1

NC_002951
(Staphylococcus aureus COL)

2e-120

5) ccrA1
( YP_007582643.1 )

Cassette chromosome recombinase A1

NC_020536
(Staphylococcus aureus ST228)

2e-120

6) ccrA1
( YP_007620358.1 )

Cassette chromosome recombinase A1

NC_020566
(Staphylococcus aureus ST228)

2e-120

7) ccrA1
( YP_007622344.1 )

Cassette chromosome recombinase A1

NC_020568
(Staphylococcus aureus ST228)

2e-120

8) ccrA1
( YP_007576656.1 )

Cassette chromosome recombinase A1

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

2e-120

9) ccrA1
( YP_007618371.1 )

Cassette chromosome recombinase A1

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

2e-120

10) ccrA1
( YP_007578664.1 )

Cassette chromosome recombinase A1

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

2e-120

11) ccrA1
( YP_007580628.1 )

Cassette chromosome recombinase A1

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

2e-120

12) ccrA1
( YP_007584607.1 )

Cassette chromosome recombinase A1

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

2e-120

13) ccrA1
( YP_005754052.1 )

site-specific recombinase CcrA1

NC_017349
(Staphylococcus aureus LGA251)

4e-120

14) ccrA1
( YP_042166.1 )

site-specific recombinase

NC_002953
(Staphylococcus aureus MSSA476)

3e-119

15) ccrA
( YP_008167248.1 )

cassette chromosome recombinase A

NC_021670
(Staphylococcus aureus Bmb9393)

2e-115

16) ccrA
( YP_005743457.1 )

cassette chromosome recombinase A1

NC_017341
(Staphylococcus aureus JKD6008)

2e-115

17) SAT0131_00056
( YP_005751354.1 )

Cassette chromosome recombinase A3

NC_017347
(Staphylococcus aureus T0131)

2e-115

18) ccrA
( YP_005730116.1 )

site-specific recombinase CcrA

NC_017331
(Staphylococcus aureus TW20)

2e-115

19) ccrA
( YP_039531.1 )

site-specific recombinase

NC_002952
(Staphylococcus aureus MRSA252)

1e-109

20) SERP2498
( YP_190040.1 )

cassette chromosome recombinase A

NC_002976
(Staphylococcus epidermidis RP62A)

1e-109

21) ccrA
( YP_005740812.1 )

Cassette chromosome recombinase A

NC_017340
(Staphylococcus aureus 04-02981)

1e-108

22) CA347_59
( YP_008126943.1 )

recombinase family protein

NC_021554
(Staphylococcus aureus CA-347)

1e-108

23) SaurJH1_0050
( YP_001315203.1 )

resolvase domain-containing protein

NC_009632
(Staphylococcus aureus JH1)

1e-108

24) SaurJH9_0049
( YP_001245437.1 )

resolvase

NC_009487
(Staphylococcus aureus JH9)

1e-108

25) ccrA
( YP_001440651.1 )

cassette chromosome recombinase A

NC_009782
(Staphylococcus aureus Mu3)

1e-108

26) ccrA
( NP_370586.1 )

cassette chromosome recombinase A

NC_002758
(Staphylococcus aureus Mu50)

1e-108

27) ccrA
( NP_373298.1 )

cassette chromosome recombinase A

NC_002745
(Staphylococcus aureus N315)

1e-108

28) ccrA
( YP_008586688.1 )

cassette chromosome recombinase A

NC_022443
(Staphylococcus aureus SA40)

2e-107

29) MS7_0070
( YP_005756537.1 )

resolvase, N terminal domain protein

NC_017351
(Staphylococcus aureus 11819-97)

4e-107

30) ccrA
( YP_492758.1 )

cassette chromosome recombinase A

NC_007793
(Staphylococcus aureus FPR3757)

4e-107

31) ccrA
( YP_005738213.1 )

cassette chromosome recombinase A1

NC_017338
(Staphylococcus aureus JKD6159)

4e-107

32) SAMSHR1132_00410
( YP_005324564.1 )

site-specific recombinase

NC_016941
(Staphylococcus aureus MSHR1132)

4e-107

33) ccrA
( YP_001573964.1 )

cassette chromosome recombinase A

NC_010079
(Staphylococcus aureus TCH1516)

4e-107

34) SE0037
( NP_763592.1 )

cassette chromosome recombinase A

NC_004461
(Staphylococcus epidermidis ATCC 12228)

1e-106

35) SAKOR_00048
( YP_008490232.1 )

Site-specific recombinase

NC_022226
(Staphylococcus aureus CN1)

8e-107

36) ccrA
( YP_006236414.1 )

site-specific recombinase

NC_017763
(Staphylococcus aureus HO 5096 0412)

8e-107

37) BN843_710
( YP_007867150.1 )

Cassette chromosome recombinase A

NC_021059
(Staphylococcus aureus M1)

8e-107

38) ccrA
( NP_644854.1 )

cassette chromosome recombinase A

NC_003923
(Staphylococcus aureus MW2)

8e-107

39) ccrA
( YP_005746509.1 )

site-specific recombinase

NC_017342
(Staphylococcus aureus TCH60)

9e-107

• Sequence Alignments

1) BN843_350 in NC_021059


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  711 bits (2690),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 453/453 (100%), Positives = 453/453 (100%), Gaps = 0/453 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
            RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI  420
            EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI  420

Query  421  TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI  453
            TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI
Sbjct  421  TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI  453

2) SE0057 in NC_004461


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  711 bits (2690),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 453/453 (100%), Positives = 453/453 (100%), Gaps = 0/453 (0%)

Query  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60
            MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120
            ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180
            MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240
            YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  FEEAQERRIHKQlnrsnsrnklkrrIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300
            FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360
            RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI  420
            EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKI  420

Query  421  TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI  453
            TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI
Sbjct  421  TQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI  453

3) SSP0036 in NC_007350


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  427 bits (1609),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 238/443 (54%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            M +A++Y+RQST KQQSLA+QK  I   A +    +++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVRDGYFDMNKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+  H+ I+SV DGYFD++K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F ++   + TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADNKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            +EEAQ  R +KQ++R  S N+LK++IKCPYC+STLTN+T++K + SLRYYVCP+NMN+A 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKKQKDIEAKNTLTQEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +    LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGKIDAESFRKQTQSSRQHSKPILSINAYQIQKAFQNIIQQRFTLNMLYPYIDEIH  420
            EKLAQ +ID  +F++ + S + + +   + ++YQI+  ++ +I++++TL+ + P+ID I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  INKNKTLTGIYFKNEPLNIVNQT  443
            I + K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

4) ccrA1 in NC_002951


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

5) ccrA1 in NC_020529


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

6) ccrA1 in NC_020564


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

7) ccrA1 in NC_020532


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

8) ccrA1 in NC_020533


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

9) ccrA1 in NC_020537


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

10) ccrA1 in NC_020566


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

11) ccrA1 in NC_020536


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

12) ccrA1 in NC_020568


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  425 bits (1601),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 242/443 (55%), Positives = 346/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   AK+     ++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKAKQGK+ITTHAPFGY+Y++G F ++   A TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ ++I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR  300
            +EEAQ  R +K ++R  S N+LK++IKCPYC+STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ++ID  TF+  + S + + +  S+ STYQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

13) ccrA1 in NC_017349


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  424 bits (1596),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 241/443 (55%), Positives = 348/443 (79%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTLKQQSLSAQKQTIKTLAEKHNIQHIIFYSDKQSGRTENRTGYQQITEL  60
            M +AI+Y+RQSTLKQQSL++QK  I   A +    ++ FY DK++GR  +R+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMNKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+  H+ I+SV+DGYFD++K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYHNGTFMINNIEAPTVKAVFSY  180
            +SLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F++++ EA TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEDDEKFINRKPYQVRNIIMNPNYCGRVINQYGRYDNMCPSIVSTSI  240
            YLQG GYKKI+Q L+ + ++I RKPYQVRNI++NPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCGSTLTNITIRKKHRTLRYYVCPQNMNASR  300
            +E+AQ  R +KQL+R++S N+LK++IKCPYC STLTN+TI+K + +LRYYVCP+NMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQSLEASVLVTCQDFFQNQHLYSKINHTIQKRLKKQKDIEAKSTVTQEQLI  360
              C FK+INA  LE+ VL TC+ +F++Q +  ++N+TI K LK+Q+  +  + +TQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQNVIQQSFTLNMLYPYIDEIH  420
            EKLAQ +ID  TF+  + S + + +  ++  T QI+  L+ VI++ +TL+ + P+ID I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKSKTLTGIYFKNEPLNIVNQT  443
            IT++K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

14) ccrA1 in NC_002953


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  421 bits (1585),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 241/443 (55%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITEL  60
            M +AI+Y+RQST KQQSLA+QK  I   A +    +++FY DK++GR  KR+GYQ++ E+
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I  G+C VLCCYRLNRLHRNLKNA+++  +C+  H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYHNGTFTIDTVKSPTVKAVFNY  180
            +SLAE+ES+NI+EQ KNGI+EKA+QGKLITTHAPFGY+Y++G F ++   + TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI  240
            YLQG GYKKI+Q L+++ N+I RKPYQVRNI+LNPNYCGRVIN+YG ++++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEEAQVTRTQKQVKCKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNAR  300
            +EEAQ  R +KQ++   S N+LK++IKCPYC+STLTN+T++K + SLRYYVCP+NMN+A 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIEIKTTLNHEQLI  360
              C FK+INA ELE+ VL TC+ +F++Q +  ++N+TI + LK+Q+  +  T L +EQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGKIDAETFKEQTHSLHQQSKPISSISAYQIRKAFQNIIQQRFTLNMLYPYIDEIN  420
            EKLAQ +ID  TFK  + S   + +  S+ S+YQI   ++ +I++++TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSEEN-YSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ISKNKSLAGIYFKNEPLNIVKQT  443
            I++ K L GIYFKN PLNIV Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

15) ccrA in NC_021670


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 237/443 (54%), Positives = 343/443 (78%), Gaps = 2/443 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            M  AI+Y+RQST KQQSL++QK  I   A +    N+ +  DK++GR  +R+GYQ++ E 
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I   +C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            MSLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQG GYKKI+Q L+ + +LI RKPYQVRNI++NPNYCGRVIN+YG +N++VPPI+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKH-TLRYYICPKNMNESR  299
            +E+AQ  R  KQL+   S N+LK++IKCP C+STLTN+TI+K + +LRYY+CPKNMN++ 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
              C+FK+INA  LE +VL TC+++F++Q +  ++NN+I + LK+Q++ +  + LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+  ID  +F++ +    + +   S+ S  Q++  L+ VI++ +TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSA-SCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  420  ITKNKALVGIYFKNEPLNIVNQT  442
            IT+ K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

16) ccrA in NC_017341


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 237/443 (54%), Positives = 343/443 (78%), Gaps = 2/443 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            M  AI+Y+RQST KQQSL++QK  I   A +    N+ +  DK++GR  +R+GYQ++ E 
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I   +C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            MSLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQG GYKKI+Q L+ + +LI RKPYQVRNI++NPNYCGRVIN+YG +N++VPPI+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKH-TLRYYICPKNMNESR  299
            +E+AQ  R  KQL+   S N+LK++IKCP C+STLTN+TI+K + +LRYY+CPKNMN++ 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
              C+FK+INA  LE +VL TC+++F++Q +  ++NN+I + LK+Q++ +  + LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+  ID  +F++ +    + +   S+ S  Q++  L+ VI++ +TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSA-SCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  420  ITKNKALVGIYFKNEPLNIVNQT  442
            IT+ K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

17) SAT0131_00056 in NC_017347


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 237/443 (54%), Positives = 343/443 (78%), Gaps = 2/443 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            M  AI+Y+RQST KQQSL++QK  I   A +    N+ +  DK++GR  +R+GYQ++ E 
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I   +C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            MSLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQG GYKKI+Q L+ + +LI RKPYQVRNI++NPNYCGRVIN+YG +N++VPPI+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKH-TLRYYICPKNMNESR  299
            +E+AQ  R  KQL+   S N+LK++IKCP C+STLTN+TI+K + +LRYY+CPKNMN++ 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
              C+FK+INA  LE +VL TC+++F++Q +  ++NN+I + LK+Q++ +  + LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+  ID  +F++ +    + +   S+ S  Q++  L+ VI++ +TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSA-SCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  420  ITKNKALVGIYFKNEPLNIVNQT  442
            IT+ K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

18) ccrA in NC_017331


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 237/443 (54%), Positives = 343/443 (78%), Gaps = 2/443 (0%)

Query  1    MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTER  60
            M  AI+Y+RQST KQQSL++QK  I   A +    N+ +  DK++GR  +R+GYQ++ E 
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF  120
            I   +C VLCCYRLNRLHRNLKNA+++  +C+K H+ I+SV+DGYFD+ K FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  MSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQNGTFIINNDESPTVKAVFNY  180
            MSLAE+ES+NI+EQ KNG+REKAKQGKLITTHAPFGY+Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK  240
            YLQG GYKKI+Q L+ + +LI RKPYQVRNI++NPNYCGRVIN+YG +N++VPPI+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKH-TLRYYICPKNMNESR  299
            +E+AQ  R  KQL+   S N+LK++IKCP C+STLTN+TI+K + +LRYY+CPKNMN++ 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  300  FVCSFKGINAQKLEVQVLATCQNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLI  359
              C+FK+INA  LE +VL TC+++F++Q +  ++NN+I + LK+Q++ +  + LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  360  DKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQKVIQKSFTLNMLHPYIDEIR  419
            +KLA+  ID  +F++ +    + +   S+ S  Q++  L+ VI++ +TL+ + P+ID I+
Sbjct  361  EKLAQNRIDVKTFKRLSA-SCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  420  ITKNKALVGIYFKNEPLNIVNQT  442
            IT+ K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

19) ccrA in NC_002952


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 220/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   + +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  ++ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQ QLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+ID I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKSKTLMGIYFKNEPLNIVNQT  443
            IT++K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

20) SERP2498 in NC_002976


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 220/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   + +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  ++ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQ QLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+ID I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKSKTLMGIYFKNEPLNIVNQT  443
            IT++K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

21) ccrA in NC_017340


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

22) CA347_59 in NC_021554


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

23) SaurJH1_0050 in NC_009632


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

24) SaurJH9_0049 in NC_009487


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

25) ccrA in NC_009782


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

26) ccrA in NC_002758


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

27) ccrA in NC_002745


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  386 bits (1451),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/443 (51%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ+++++S N+LK++IKCP C++TLTN+T++K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

28) ccrA in NC_022443


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  382 bits (1436),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 222/443 (51%), Positives = 342/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD F+LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  300
            +E+AQ  R++KQ ++++S N+LK++IKCP C++TLTN+T++K N  LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ CK ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLHQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S  +  +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSAS-CKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

29) MS7_0070 in NC_017351


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

30) ccrA in NC_017338


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

31) SAMSHR1132_00410 in NC_016941


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

32) ccrA in NC_007793


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

33) ccrA in NC_010079


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

34) SE0037 in NC_004461


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1427),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQVTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ ++++S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQA  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

35) SAKOR_00048 in NC_022226


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1429),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 220/443 (50%), Positives = 342/443 (78%), Gaps = 1/443 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQLTQL  66
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  126
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  247  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR  306
            +E+AQ  R +KQ ++++S N+LK++IKCP C++TLTN+T++K N  LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  307  FVCDFKGINAQTLEDKVLKVCQDFYQDQHIYVKIKNAIDKRIKRQRNIEKHHTLTQEQLI  366
              C FK+INA  LE  VL  C+ ++++Q +  +++N+I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  367  EKLAQGIIDAETFRKQMQSLHQQPQRITSISEhqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQ  ID  TF++ + +  +  +  ++ S  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKR-LSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  427  IAKDKNLIGIYFKNEPLNIVNQT  449
            I++ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

36) ccrA in NC_017763


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHHGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y+ G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R +KQ ++++S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhiiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQT  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

37) BN843_710 in NC_021059


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1429),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 344/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  ++ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ ++++S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKDKNLIGIYFKNEPLNIVNQA  443
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

38) ccrA in NC_003923


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  1    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQITQL  60
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY+++ ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  61   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF  120
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  H+ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  121  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY  180
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  181  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  240
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  241  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  300
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  301  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLI  360
              C FK+INA  LE  VL+ C+ ++++Q +  +++++I K +K+Q+  +K+  LTQ QLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  361  EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHqiqntiqniiqKRFTLNMLYPYIDEIL  420
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+ID I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  421  ITKSKTLMGIYFKNEPLNIVNQT  443
            IT++K L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442

39) ccrA in NC_017342


> BK001539|8|G4|46560522|DAA01836.1|Staphylococcus_epidermidis_ATCC_12228|-|27726..29087|ccrA4|-|cassette 
chromosome recombinase 
A type 4
Length=453

 Score =  380 bits (1428),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 221/443 (50%), Positives = 343/443 (78%), Gaps = 1/443 (0%)

Query  7    MKQVIGYLRQSTMKQQSLaaqkqaieaiaekHHIQHINFYSDKQSGRKDNRSGYRQMTQL  66
            M + I+Y+RQST+KQQSLA+QK  I   A +    ++ FY DK++GR  +RSGY++M ++
Sbjct  1    MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEI  60

Query  67   IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRLKLNIF  126
            I  G+C +LCCYRLNRLHRNLKNA++++ +C+  ++ I+SV+DGYFD+ + FD ++LNI+
Sbjct  61   ITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNIL  120

Query  127  ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY  186
            +SLAE+ES+NI+EQ +NG++EKAKQG+LITTHAPFGY Y++G F+++++E+ TVK+V+  
Sbjct  121  MSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRW  180

Query  187  YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI  246
            Y++G GYKKI+Q L+ +   I R+PYQVRNI++NPNYCGRV N+YG F+++ P+I+    
Sbjct  181  YLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT  240

Query  247  YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR  306
            +E+AQ  R++KQ +++ S N+LK++IKCP C++TLTN+TI+K N +LRYYVCPKNMN + 
Sbjct  241  FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAY  300

Query  307  FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI  366
              C FK+INA  LE  VL+ C+ ++++Q +  +++ +I K +K+Q+  +K+  LTQEQLI
Sbjct  301  RTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLI  360

Query  367  EKLAQGIIDAETFREQTQSLRQQPQRTTSinghqiqhtiqniiqKRFTLNILYPYIETIH  426
            EKLAQ  ID  TF+  + S + + +  ++ +  QI++ ++ +I++++TL+ + P+I+ I 
Sbjct  361  EKLAQNRIDVKTFKRLSASCKSE-ENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIK  419

Query  427  ITKDKNLIGIYFKNEPLNIVNQA  449
            IT+ K+L GIYFKN PLNIV+Q+
Sbjct  420  ITQTKQLQGIYFKNSPLNIVEQS  442