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Homologs of hrpL gene of AY597283

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) H650_14875
( YP_008108775.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-38

2) PSEBR_a5390
( YP_004356901.1 )

RNA polymerase sigma factor

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-36

3) Marme_1067
( YP_004312178.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_015276
(Marinomonas mediterranea MMB-1)

5e-36

4) hrpL
( YP_005210977.1 )

protein HrpL

NC_016830
(Pseudomonas fluorescens F113)

9e-35

5) D781_3946
( YP_007346321.1 )

RNA polymerase sigma factor, sigma-70 family

NC_020064
(Serratia marcescens FGI94)

5e-34

6) hrpL
( YP_050182.1 )

sigma factor

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-32

7) PCC21_022820
( YP_006646938.1 )

sigma factor

NC_018525
(Pectobacterium carotovorum PCC21)

3e-32

8) PC1_2204
( YP_003017779.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_012917
(Pectobacterium carotovorum PC1)

4e-32

9) rspL
( YP_002870376.1 )

sigma factor

NC_012660
(Pseudomonas fluorescens SBW25)

1e-31

10) hrpL
( YP_003539960.1 )

sigma factor HrpL

NC_013971
(Erwinia amylovora ATCC 49946)

8e-32

11) hrpL
( YP_003529894.1 )

RNA polymerase sigma factor HrpL

NC_013961
(Erwinia amylovora CFBP1430)

8e-32

12) hrpL
( YP_005804083.1 )

RNA polymerase sigma factor HrpL

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-31

13) hrpL
( YP_002650066.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-31

14) hrpL
( YP_005818263.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_017445
(Erwinia sp. Ejp617)

2e-31

15) Dd586_1890
( YP_003333454.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_013592
(Dickeya dadantii Ech586)

4e-31

16) hrpL
( YP_003883238.1 )

RNA polymerase sigma-54 factor rpoN

NC_014500
(Dickeya dadantii 3937)

4e-31

17) rspL
( YP_006322223.1 )

RNA polymerase sigma factor RspL

NC_017911
(Pseudomonas fluorescens A506)

5e-31

18) H045_00150
( YP_007395602.1 )

sigma factor

NC_020209
(Pseudomonas poae RE*1-1-14)

5e-30

19) hrpL
( NP_791231.1 )

RNA polymerase sigma factor HrpL

NC_004578
(Pseudomonas syringae DC3000)

9e-30

20) Ser39006_2911
( YP_008523293.1 )

RNA polymerase, sigma-24 subunit, ECF subfamily

NC_022268
(Serratia sp. ATCC 39006)

1e-29

21) hrpL
( YP_273553.1 )

RNA polymerase sigma factor HrpL

NC_005773
(Pseudomonas syringae 1448A)

1e-29

22) Psyr_1217
( YP_234309.1 )

sigma-70 region 2:sigma-70 region 4

NC_007005
(Pseudomonas syringae B728a)

9e-29

23) hrpL
( YP_001906471.1 )

Sigma factor HrpL (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-26

24) Dd1591_1893
( YP_003004222.1 )

RNA polymerase, sigma-24 subunit, ECF subfamily

NC_012912
(Dickeya zeae Ech1591)

4e-26

• Sequence Alignments

1) H650_14875 in NC_021500


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  150 bits (554),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 80/161 (50%), Positives = 123/161 (77%), Gaps = 0/161 (0%)

Query  17   AFDIDELVANTTTRLRKFISRRVYNQSDVDDLVQMTYLEAFRNQHKFIGASSKETWLFGI  76
            A+D++ L   +  +LR FI++RV+NQ+DVDDL+QMTYLEA RNQHKF+G+S  ETWLFGI
Sbjct  43   ALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGI  102

Query  77   ASNLVRNHFKKTFNKPEMVALDDVNFLISDQIFNPDYINEHKIQLSETIAMVDKLPLKMQ  136
            A+NLVRNHFK  +N+P+ + L D +    ++  +P  +++H+  L+ T+A ++ L++ M+
Sbjct  103  AANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMR  162

Query  137  NVIYHIMDSDTSYNDAAEQLGIPIGTIRSRLSRVRKILKNN  177
             V+  ++D+D SY+DAA +L++PIGTIRSRL+R R  LK++
Sbjct  163  AVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSS  203

2) PSEBR_a5390 in NC_015379


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 85/153 (56%), Positives = 115/153 (76%), Gaps = 0/153 (0%)

Query  41   ERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFRGLAKQDTWLCGIALNLIRNHFRR  100
            E+KLR F+ KRV+NQ D DD++Q+TYLEAWRNQ+KF G ++ +TWL GIA NL+RNHF+ 
Sbjct  54   EKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNHFKT  113

Query  101  FYAQPPLTTFDESEFHESSDDIDLSELCDNRRLLDRTLLAMDALSKDMRDTLWTAVDTES  160
            FY QP    + ++E +   ++ D S L D++R L+RTL A++ LS DMR  L   VD++ 
Sbjct  114  FYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLVVDADV  173

Query  161  SYRDAAERLGVPIGTVRSRLFRAREQLKRSVYG  193
            SY+DAA +L+VPIGT+RSRL RAR QLK SVY+
Sbjct  174  SYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

3) Marme_1067 in NC_015276


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 79/164 (49%), Positives = 121/164 (74%), Gaps = 4/164 (2%)

Query  16   IDIAHLHSNQNEKLRRFISKKIWHKEDAEEVLQFTYLEAIRCQHKFIGDSKPETWLFGIA  75
            +D++ L    + KLR FI+K++ ++ D ++++Q TYLEA R QHKF+G S+PETWLFGIA
Sbjct  44   LDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIA  103

Query  76   ANLTKNYFKRYYNAPELEEMTESLIMDLES-EIEADPAMLVEHENLLTKTVDAMSQLPSD  134
            ANL +N FK +YN P+  E+T++   ++ES E   DP+ML +H+  L +T+ A+ +L+ D
Sbjct  104  ANLVRNHFKTFYNQPQRMELTDT---EMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVD  160

Query  135  TQSILDMVIEKDFSYQEAADSIGVPIGTIRSRLSRARQLLKQCI  178
             +++LD+V++ D SYQ+AA  ++VPIGTIRSRL+RAR  LK  +
Sbjct  161  MRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

4) hrpL in NC_016830


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  139 bits (511),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 84/153 (55%), Positives = 115/153 (76%), Gaps = 0/153 (0%)

Query  27   ERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRR  86
            E+KLR F+ KRV+NQ D DD++Q+TYLEAWRNQ+KF G ++ +TWL GIA NL+RNHF+ 
Sbjct  54   EKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNHFKT  113

Query  87   FYAQPPlstfdesefsessddidlselCDNRRLLDRTLSAMDALPKDMRDTLWTAVDTES  146
            FY QP    + ++E     ++ D S L D++R L+RTL+A++ L+ DMR  L   VD++ 
Sbjct  114  FYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLVVDADV  173

Query  147  SYRDAAERLGVPIGTVRSRLFRAREQLKRSVYG  179
            SY+DAA +L+VPIGT+RSRL RAR QLK SVY+
Sbjct  174  SYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

5) D781_3946 in NC_020064


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  136 bits (501),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 80/167 (48%), Positives = 121/167 (73%), Gaps = 6/167 (3%)

Query  17   IPVDWEGIFKQSNKKLINFIRRRVASTEDVEDIAQMTCLEVLRNRHKFTGASLPETWMFG  76
            I++D  G+ + S+KKL  FI +RV +  DV+D+ QMT LE  RN+HKF G+S PETW+FG
Sbjct  42   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  101

Query  77   IAINLIRNHYK---RQQHRYLFDTLNDEVLENLLHDDDPSALTEHQRLLTTALTSIDRLP  133
            IA NL+RNH+K    Q +R     L D  +E++ H++DPS L++HQR L  +L++I+ L+
Sbjct  102  IAANLVRNHFKTFYNQPQR---MELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELS  158

Query  134  EEIKHMLTILIGDDGSYQDIAQQLNIPIGTVRSRLSRARETLKSQVF  180
             +++ +L ++++ D SYQD A++L +PIGT+RSRL+RAR  LKS V+
Sbjct  159  VDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVY  205

6) hrpL in NC_004547


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  131 bits (480),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query  1    MEMSTKHTEQTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLK  60
            +++  K+ ++  ++   +A+D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  +
Sbjct  25   INVEGKDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWR  84

Query  61   HQDKFAGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIELDPGAITESQ  118
            +Q+KF G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +    DP+ +++ Q
Sbjct  85   NQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQ  144

Query  119  RALKRAMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLGIPIGTVRSRLSRARGVIRQAV  178
            R+L R++ AI  L+ D R +L  ++D+D SYQD A +L++PIGT+RSRL+RARG ++ +V
Sbjct  145  RTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

7) PCC21_022820 in NC_018525


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  130 bits (478),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 81/175 (47%), Positives = 123/175 (71%), Gaps = 2/175 (1%)

Query  7    KHIEQTPSLYPALSVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKF  66
            K+I++  ++   +++D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  ++Q+KF
Sbjct  30   KDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKF  89

Query  67   AGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIELDPGAITESQRSLKR  124
             G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +    DP+ +++ QR+L R
Sbjct  90   MGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGR  149

Query  125  AMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAV  179
            ++ AI  L+ D R +L  ++D+D SYQD A +L +PIGT+RSRL+RARG ++ +V
Sbjct  150  TLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

8) PC1_2204 in NC_012917


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  130 bits (477),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 82/175 (47%), Positives = 123/175 (71%), Gaps = 2/175 (1%)

Query  7    KHIEPTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKF  66
            K+I+   ++   +A+D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  ++Q+KF
Sbjct  30   KDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKF  89

Query  67   AGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIDLDPGAIAESQRALKR  124
             G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +  + DP+ +++ QR+L R
Sbjct  90   MGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGR  149

Query  125  AMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAV  179
            ++ AI  L+ D R +L  ++D+D SYQD A +L +PIGT+RSRL+RARG ++ +V
Sbjct  150  TLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

9) rspL in NC_012660


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 73/156 (47%), Positives = 112/156 (72%), Gaps = 0/156 (0%)

Query  22   LTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIR  81
            L+   +KKLR FI KRV+N  D DDL+Q+TYLEAWRN+++F G +   TW+ GIA NL+R
Sbjct  49   LARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVR  108

Query  82   NHFRRLYAKPVHCEFDESLWHGQEDNHNLDWEFEINRRLEKTLSAIDHLPIEMRKTLYAS  141
            NHF+ +Y +P + E+ ++  ++ E+ H+     + +R L +TL+AI++L+++MR  L   
Sbjct  109  NHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLV  168

Query  142  LETDGSYQDTADALDIPIGTVRSRLSRAREQLKRAT  177
            +++D SYQD+A  L +PIGT+RSRL+RAR QLK + 
Sbjct  169  VDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

10) hrpL in NC_013971


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  129 bits (474),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 83/185 (45%), Positives = 128/185 (70%), Gaps = 7/185 (3%)

Query  3    EIHLQTTE---STSVNDGLPLNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLE  59
            EI+++  +     +V + ++L+++  G+ R   ++++ FI KRV ++ D +DL QMT LE
Sbjct  24   EINVEGKDIQRDGTVIGVIALDLG--GLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLE  81

Query  60   VLRNRDKFAGASRPETWVFGIALNLVRNHFRLQSGRPRCDELEDDII--LTQGDDPSHIT  117
              RN++KF G+SRPETW+FGIA NLVRNHF+    +P+  EL D  +  + +G+DPS ++
Sbjct  82   AWRNQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLS  141

Query  118  EYQRLLNSTLNSIANLPEDTRRLLNMLVEKDGSYQAIAAHLNIPIGTVRSRLSRARVTLK  177
            + QR L  TL +I +L+ D R +L+++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK
Sbjct  142  DHQRTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLK  201

Query  178  QSVFS  182
             SV+S
Sbjct  202  SSVYS  206

11) hrpL in NC_013961


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  129 bits (474),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 83/185 (45%), Positives = 128/185 (70%), Gaps = 7/185 (3%)

Query  3    EIHLQTTE---STSVNDGLPLNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLE  59
            EI+++  +     +V + ++L+++  G+ R   ++++ FI KRV ++ D +DL QMT LE
Sbjct  24   EINVEGKDIQRDGTVIGVIALDLG--GLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLE  81

Query  60   VLRNRDKFAGASRPETWVFGIALNLVRNHFRLQSGRPRCDELEDDII--LTQGDDPSHIT  117
              RN++KF G+SRPETW+FGIA NLVRNHF+    +P+  EL D  +  + +G+DPS ++
Sbjct  82   AWRNQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLS  141

Query  118  EYQRLLNSTLNSIANLPEDTRRLLNMLVEKDGSYQAIAAHLNIPIGTVRSRLSRARVTLK  177
            + QR L  TL +I +L+ D R +L+++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK
Sbjct  142  DHQRTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLK  201

Query  178  QSVFS  182
             SV+S
Sbjct  202  SSVYS  206

12) hrpL in NC_017445


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  128 bits (469),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  42   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  101

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  102  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  161

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  162  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

13) hrpL in NC_017390


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  128 bits (469),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  42   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  101

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  102  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  161

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  162  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

14) hrpL in NC_012214


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  128 bits (469),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  42   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  101

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  102  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  161

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  162  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

15) Dd586_1890 in NC_013592


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  127 bits (465),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 78/155 (51%), Positives = 113/155 (73%), Gaps = 1/155 (0%)

Query  28   RLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNH  87
            R   K+L+ FI KRV N+ DV+DL QMTYLE  +N++KF G+SRPETW+FGIA NLVRNH
Sbjct  51   RTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNH  110

Query  88   FKQARYRTVDISDEVLEVVEVMSTDIDPSRITECDHALDRALAASAHLPEDTRKMLVMLL  147
            FK + Y   +  +     +E    + DPS +++ +++L+R+LAA  +L+ D R +L +++
Sbjct  111  FK-TFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLVV  169

Query  148  DADISYQDIATQLNIPIGTVRSRLSRARGYLRQAV  182
            DAD+SYQD A +L +PIGT+RSRL+RARG L+ +V
Sbjct  170  DADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

16) hrpL in NC_014500


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  127 bits (465),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 116/158 (74%), Gaps = 7/158 (4%)

Query  28   RLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNH  87
            R   K+L+ FI KRV N+ DV+DL QMTYLE  +N++KF G+SRPETW+FGIA NLVRNH
Sbjct  51   RTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNH  110

Query  88   FKQARYRA---VDISDDALEVAEILSTDIDPSRITECDHSLNRALAASAHLPEETRKMLM  144
            FK + Y     ++++D  +E    +  + DPS +++ +++L R+LAA  +L+ + R +L 
Sbjct  111  FK-TFYNQPQRMELTDTEMES---FEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLD  166

Query  145  MLLDADVSYQDIAEQLNIPIGTVRSRLSRARGYLRQAV  182
            +++DADVSYQD A +L +PIGT+RSRL+RARG L+ +V
Sbjct  167  LVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

17) rspL in NC_017911


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  126 bits (463),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 74/153 (49%), Positives = 109/153 (72%), Gaps = 0/153 (0%)

Query  22   LTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGTATLSTWMCGIAQNLIR  81
            L+   +KKLR FI KRV+N  D DDL+Q+TYLEAWRN+++F GT+   TW+ GIA NL+R
Sbjct  49   LARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVR  108

Query  82   NHFRRLYAKPSHCEFDESLWHGHEENHSLDWEFEVNRRLENTLSAIDHLPTEMRRTLYAS  141
            NHF+ +Y +P + E+ ++  ++ E+ H      + +R L  TL+AI++L+ +MR  L   
Sbjct  109  NHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLV  168

Query  142  LETDGSYQDTADVLDIPIGTVRSRLSRAREQLK  174
            +++D SYQD+A  L +PIGT+RSRL+RAR QLK
Sbjct  169  VDADVSYQDAARHLAVPIGTIRSRLARARGQLK  201

18) H045_00150 in NC_020209


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  123 bits (450),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 72/153 (48%), Positives = 109/153 (72%), Gaps = 0/153 (0%)

Query  22   LTDDQQKKLRRFIHKRVLNPEDADDILQLTYLEAWRNRERFSGQASLSTWMCGIAQNLVR  81
            L+   +KKLR FI KRV+N  D DD++Q+TYLEAWRN+++F G +   TW+ GIA NLVR
Sbjct  49   LARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVR  108

Query  82   NHFRRLYAKPVHCEFDESLWHGQEENKNLDWEFEINRRLEKTLSAIDHLPAEMRKTLYAS  141
            NHF+ +Y +P + E+ ++  ++ E+  +     + +R L +TL+AI++L+ +MR  L   
Sbjct  109  NHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLV  168

Query  142  LETDGSYQDTANVLDIPIGTVRSRLSRAREQLK  174
            +++D SYQD+A  L +PIGT+RSRL+RAR QLK
Sbjct  169  VDADVSYQDAARHLAVPIGTIRSRLARARGQLK  201

19) hrpL in NC_004578


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 72/153 (48%), Positives = 110/153 (72%), Gaps = 6/153 (3%)

Query  31   QMLRAFIQKRVMNPDDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKM  90
            + LR+FI KRV N  DVDD++Q  +LEA RN+HKF  +S+P+TWL GIA NL+RNHF+  
Sbjct  55   KKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNHFKTF  114

Query  91   YRQPYQESWEDEVHSELEG--HGDVSHQVEGH-RQLARVIQAIDCLPSNMQKVLEVSLEM  147
            Y QP    + +  ++E+E+  HG+ +  + +H R L+R + AI+ L+ +M+ VL++ ++ 
Sbjct  115  YNQP---QRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLVVDA  171

Query  148  DGNYQETANSLGVPIGTVRSRLSRARVQLKQQI  180
            D +YQ++A  L+VPIGT+RSRL+RAR QLK  +
Sbjct  172  DVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

20) Ser39006_2911 in NC_022268


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/154 (50%), Positives = 110/154 (72%), Gaps = 2/154 (1%)

Query  28   RQHGKRLHNFIRKRVSNREDVEDLQQMTYLEVLKNSEKFAGASRPETWVFGIALNLVRNH  87
            R   K+L+ FI KRV N+ DV+DL QMTYLE  +N +KF G+SRPETW+FGIA NLVRNH
Sbjct  51   RTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNH  110

Query  88   FKQ--ARIRANEVGDEILEFLSNDIDPSRIVECDYSLVRAVAATAQLPEETRKMLLMLID  145
            FK    + +  E+ D  +E + ++ DPS + + + +L R++AA  +L+ + R +L +++D
Sbjct  111  FKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLVVD  170

Query  146  SDVSYQDIANMLNIPIGTVRSRLSRARHFLRQAV  179
            +DVSYQD A  L +PIGT+RSRL+RAR  L+ +V
Sbjct  171  ADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

21) hrpL in NC_005773


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/180 (43%), Positives = 119/180 (67%), Gaps = 5/180 (2%)

Query  6    VILDAPQPRQDSSSAGIRQLTADQI-----QMLRAFIQKRVMNPDDVDDILQCVFLEALR  60
            + +++ + ++D++  G+  L  + +     + LR+FI KRV N  DVDD++Q  +LEA R
Sbjct  25   INVEGKDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWR  84

Query  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHSELEWNGDITHQVDGH  120
            N+HKF  +S+P+TWL GIA NL+RNHF+  Y QP +    D     +E   D +   D +
Sbjct  85   NQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQ  144

Query  121  RQLARVIAAIDCLPSNMQKVLEVSLEMDGNYQDTANTLGVPIGTVRSRLSRARVQLKQQI  180
            R L+R +AAI+ L+ +M+ VL++ ++ D +YQD+A  L+VPIGT+RSRL+RAR QLK  +
Sbjct  145  RTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

22) Psyr_1217 in NC_007005


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  119 bits (435),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 72/156 (47%), Positives = 105/156 (68%), Gaps = 0/156 (0%)

Query  25   LTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIR  84
            L+    + LR+FI KRV N  DVDD++Q  +LEA RN+HKF  +S+P+TWL GIA NL+R
Sbjct  49   LARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVR  108

Query  85   NHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVS  144
            NHF+  Y QP +    D     +E   D +   D +R L+R + AI+ L+ +M+ VL++ 
Sbjct  109  NHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVLDLV  168

Query  145  LEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQHI  180
            ++ D +YQ++A  L+VPIGT+RSRL+RAR QLK  +
Sbjct  169  VDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204

23) hrpL in NC_010694


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 114/165 (70%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  42   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  101

Query  80   IALNLVRNHFRLQSGRPRCDELEDDIVVV--QGDDPSHITEHQRILTSTLNSIAALPEDT  137
            IA NLVRNHF+    +P+  EL D  +    +G+DPS +++HQR L  TL +I  L+ D 
Sbjct  102  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  161

Query  138  RRLMSMLVEKDGSYQAIAAHLNIPIGTvrsrlsrarvslKQSVFS  182
            R ++ ++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  162  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  206

24) Dd1591_1893 in NC_012912


> AY597283|8|G8|51103194|AAT96335.1|Pseudomonas_viridiflava_RMX3.1b|-|7205..7837|hrpL|-|HrpL
Length=210

 Score =  110 bits (402),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 78/159 (50%), Positives = 116/159 (73%), Gaps = 9/159 (5%)

Query  28   RLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNH  87
            R   K+L+ FI KRV N+ DV+DL QMTYLE  +N++KF G+SRPETW+FGIA NLVRNH
Sbjct  51   RTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFGIAANLVRNH  110

Query  88   FKQARYRAFDISDEALEVAEI----LSTDIDPSRITECDhslsralaasahlPEETRKML  143
            FK     +F    + +E+++     +  + DPS +++ +++L+R+LAA  +L+ + R +L
Sbjct  111  FK-----TFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDMRAVL  165

Query  144  MMLLDADVSYQDIAEQLNIPIGTVRSRLSRARGYLRQAV  182
             +++DADVSYQD A +L +PIGT+RSRL+RARG L+ +V
Sbjct  166  DLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  204