Hit (GenBank Accn) |
Product |
Source Genome |
Eval. |
Ident.(%) |
|
RNA polymerase sigma factor, sigma-70 family |
NC_020064 (Serratia marcescens FGI94) |
4e-34 |
48 |
|
sigma factor |
NC_018525 (Pectobacterium carotovorum PCC21) |
3e-32 |
47 |
|
sigma factor |
NC_004547 (Pectobacterium atrosepticum SCRI1043) |
3e-32 |
45 |
|
ECF subfamily RNA polymerase sigma-24 subunit |
NC_012917 (Pectobacterium carotovorum PC1) |
4e-32 |
47 |
|
sigma factor HrpL |
NC_013971 (Erwinia amylovora ATCC 49946) |
5e-32 |
49 |
|
RNA polymerase sigma factor HrpL |
NC_013961 (Erwinia amylovora CFBP1430) |
5e-32 |
49 |
|
RNA polymerase sigma factor HrpL |
NC_017390 (Erwinia pyrifoliae DSM 12163) |
1e-31 |
49 |
|
hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor |
NC_012214 (Erwinia pyrifoliae Ep1/96) |
1e-31 |
49 |
|
hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor |
NC_017445 (Erwinia sp. Ejp617) |
1e-31 |
49 |
|
RNA polymerase sigma factor HrpL |
NC_005773 (Pseudomonas syringae 1448A) |
6e-30 |
43 |
|
Sigma factor HrpL (hrp cluster) |
NC_010694 (Erwinia tasmaniensis Et1/99) |
2e-26 |
49 |
SELECT distinct ph.genome_accn, ph.id_genome_orf, ph.position_begin_pai, ph.position_end_pai, ph.position_begin_genome, ph.position_end_genome, ph.identity, ph.qcoverage, ph.tcoverage,
ph.evalue, ph.score, ph.multi_hsp, ph.multi_strand, ph.source_class, hsp, go.name, go.name_alt, go.pid
FROM pai_homolog as ph, genome_orf as go
WHERE ph.pai_accn='AY597282' AND ph.id_pai_orf='8' AND match_level='P'
AND go.genome_accn=ph.genome_accn AND ph.id_genome_orf=go.id_genome_orf
ORDER BY ph.score desc, ph.evalue asc, ph.identity desc