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Homologs of hrpL gene of AY597281

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) D781_3946
( YP_007346321.1 )

RNA polymerase sigma factor, sigma-70 family

NC_020064
(Serratia marcescens FGI94)

4e-34

2) hrpL
( YP_050182.1 )

sigma factor

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-32

3) PCC21_022820
( YP_006646938.1 )

sigma factor

NC_018525
(Pectobacterium carotovorum PCC21)

3e-32

4) PC1_2204
( YP_003017779.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_012917
(Pectobacterium carotovorum PC1)

3e-32

5) hrpL
( YP_003539960.1 )

sigma factor HrpL

NC_013971
(Erwinia amylovora ATCC 49946)

5e-32

6) hrpL
( YP_003529894.1 )

RNA polymerase sigma factor HrpL

NC_013961
(Erwinia amylovora CFBP1430)

5e-32

7) hrpL
( YP_005804083.1 )

RNA polymerase sigma factor HrpL

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-31

8) hrpL
( YP_002650066.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-31

9) hrpL
( YP_005818263.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_017445
(Erwinia sp. Ejp617)

1e-31

10) hrpL
( YP_273553.1 )

RNA polymerase sigma factor HrpL

NC_005773
(Pseudomonas syringae 1448A)

7e-30

11) hrpL
( YP_001906471.1 )

Sigma factor HrpL (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-26

• Sequence Alignments

1) D781_3946 in NC_020064


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  137 bits (502),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 80/167 (48%), Positives = 121/167 (73%), Gaps = 6/167 (3%)

Query  17   IPVDWEGIFKQSNKKLINFIRRRVASTEDVEDIAQMTCLEVLRNRHKFTGASLPETWMFG  76
            I++D  G+ + S+KKL  FI +RV +  DV+D+ QMT LE  RN+HKF G+S PETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  77   IAINLIRNHYK---RQQHRYLFDTLNDEVLENLLHDDDPSALTEHQRLLTTALTSIDRLP  133
            IA NL+RNH+K    Q +R     L D  +E++ H++DPS L++HQR L  +L++I+ L+
Sbjct  127  IAANLVRNHFKTFYNQPQR---MELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELS  183

Query  134  EEIKHMLTILIGDDGSYQDIAQQLNIPIGTVRSRLSRARETLKSQVF  180
             +++ +L ++++ D SYQD A++L +PIGT+RSRL+RAR  LKS V+
Sbjct  184  VDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVY  230

2) hrpL in NC_004547


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  131 bits (480),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query  1    MEMSTKHTEQTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLK  60
            +++  K+ ++  ++   +A+D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  +
Sbjct  50   INVEGKDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWR  109

Query  61   HQDKFAGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIELDPGAITESQ  118
            +Q+KF G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +    DP+ +++ Q
Sbjct  110  NQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQ  169

Query  119  RALKRAMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLGIPIGTVRSRLSRARGVIRQAV  178
            R+L R++ AI  L+ D R +L  ++D+D SYQD A +L++PIGT+RSRL+RARG ++ +V
Sbjct  170  RTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  229

3) PCC21_022820 in NC_018525


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  131 bits (479),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 81/175 (47%), Positives = 123/175 (71%), Gaps = 2/175 (1%)

Query  7    KHIEQTPSLYPALSVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKF  66
            K+I++  ++   +++D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  ++Q+KF
Sbjct  55   KDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKF  114

Query  67   AGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIELDPGAITESQRSLKR  124
             G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +    DP+ +++ QR+L R
Sbjct  115  MGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGR  174

Query  125  AMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAV  179
            ++ AI  L+ D R +L  ++D+D SYQD A +L +PIGT+RSRL+RARG ++ +V
Sbjct  175  TLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  229

4) PC1_2204 in NC_012917


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  130 bits (478),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 82/175 (47%), Positives = 123/175 (71%), Gaps = 2/175 (1%)

Query  7    KHIEPTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKF  66
            K+I+   ++   +A+D   + R   KKL+ FI KRV N+ DV+DL QMTYLE  ++Q+KF
Sbjct  55   KDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKF  114

Query  67   AGASRPETWVFGIALNLVRNYFKQARQRAQ--EMGDEMLEHIAIDLDPGAIAESQRALKR  124
             G+SRPETW+FGIA NLVRN FK   +++Q  E+ D  +E +  + DP+ +++ QR+L R
Sbjct  115  MGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGR  174

Query  125  AMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAV  179
            ++ AI  L+ D R +L  ++D+D SYQD A +L +PIGT+RSRL+RARG ++ +V
Sbjct  175  TLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  229

5) hrpL in NC_013971


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELEDDII--LTQGDDPSHITEYQRLLNSTLNSIANLPEDT  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I +L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLLNMLVEKDGSYQAIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +L+++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231

6) hrpL in NC_013961


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELEDDII--LTQGDDPSHITEYQRLLNSTLNSIANLPEDT  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I +L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLLNMLVEKDGSYQAIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +L+++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231

7) hrpL in NC_017445


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231

8) hrpL in NC_017390


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231

9) hrpL in NC_012214


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 116/165 (71%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELDDDII--LTQGDDPSHITEYQRLLNSTLNSIAVLPEDA  137
            IA NLVRNHF+    +P+  EL D  +  + +G+DPS +++ QR L  TL +I  L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLMNMLVEKDGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSVFS  182
            R +++++V+ D SYQD A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231

10) hrpL in NC_005773


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  123 bits (449),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 76/180 (43%), Positives = 119/180 (67%), Gaps = 5/180 (2%)

Query  6    VILDAPQPRQDSSSAGIRQLTADQI-----QMLRAFIQKRVMNPDDVDDILQCVFLEALR  60
            + +++ + ++D++  G+  L  + +     + LR+FI KRV N  DVDD++Q  +LEA R
Sbjct  50   INVEGKDIQRDGTVIGVIALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWR  109

Query  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHSELEWNGDITHQVDGH  120
            N+HKF  +S+P+TWL GIA NL+RNHF+  Y QP +    D     +E   D +   D +
Sbjct  110  NQHKFMGTSRPETWLFGIAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQ  169

Query  121  RQLARVIAAIDCLPSNMQKVLEVSLEMDGNYQDTANTLGVPIGTVRSRLSRARVQLKQQI  180
            R L+R +AAI+ L+ +M+ VL++ ++ D +YQD+A  L+VPIGT+RSRL+RAR QLK  +
Sbjct  170  RTLGRTLAAIEELSVDMRAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSV  229

11) hrpL in NC_010694


> AY597281|8|G8|51103111|AAT96254.1|Pseudomonas_viridiflava_ME3.1b|-|7267..7974|hrpL|-|HrpL
Length=235

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/165 (49%), Positives = 114/165 (70%), Gaps = 2/165 (1%)

Query  20   LNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFG  79
            + +D  G+ R   ++++ FI KRV ++ D +DL QMT LE  RN++KF G+SRPETW+FG
Sbjct  67   IALDLGGLARTSEKKLRGFIGKRVFNQADVDDLMQMTYLEAWRNQHKFMGTSRPETWLFG  126

Query  80   IALNLVRNHFRLQSGRPRCDELEDDIVVV--QGDDPSHITEHQRILTSTLNSIAALPEDT  137
            IA NLVRNHF+    +P+  EL D  +    +G+DPS +++HQR L  TL +I  L+ D 
Sbjct  127  IAANLVRNHFKTFYNQPQRMELTDTEMESFEHGHDPSMLSDHQRTLGRTLAAIEELSVDM  186

Query  138  RRLMSMLVEKDGSYQAIAAHLNIPIGTvrsrlsrarvslKQSVFS  182
            R ++ ++V+ D SYQ  A HL +PIGT+RSRL+RAR  LK SV+S
Sbjct  187  RAVLDLVVDADVSYQDAARHLAVPIGTIRSRLARARGQLKSSVYS  231