Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of phfB gene of AF346500

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) phfB
( NP_928327.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

2e-140

2) phfB
( YP_003039808.1 )

putative major fimbrial subunit

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-82

• Sequence Alignments

1) phfB in NC_005126


> AF346500|8|G8|27479647|AAO17174.1|Photorhabdus_luminescens_W14|+|9016..10026|phfB|-|PhfB
Length=336

 Score =  491 bits (1852),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 313/336 (94%), Positives = 326/336 (98%), Gaps = 0/336 (0%)

Query  1    MKYYLRLLISAVLLFNINKIHAACISESTTGNGTVYFDlnslklnlntsntksIHVVRFS  60
            MK YLRLLISAVLLF+INK+ AACISESTT++GTVYFDLNSLKLNLNTSNTKSIHV RFS
Sbjct  1    MKSYLRLLISAVLLFSINKVYAACISESTTSSGTVYFDLNSLKLNLNTSNTKSIHVARFS  60

Query  61   AEQLASSMGLNINDPIFSCDDNGYLVFGESVYPSMAGNTEHGTGKLTTGIDNLYLYFVAA  120
            AEQLASSMGLNINDPIFSCDDNGYLVFGESVYPSMAGNTEHGTGKLTTGIDNLYLYFVA+
Sbjct  61   AEQLASSMGLNINDPIFSCDDNGYLVFGESVYPSMAGNTEHGTGKLTTGIDNLYLYFVAS  120

Query  121  TGNLNNMKYPTIDGRSYIYYPPEKKKITWKDIGDIDVYLYKEGEIKSGKSLHAGIISLLQ  180
            TGNLNNMKYPT+DGRSYIYYPPEKKKITWKDIGDIDVYLYKEG IKSG+SLHAGIISLLQ
Sbjct  121  TGNLNNMKYPTMDGRSYIYYPPEKKKITWKDIGDIDVYLYKEGAIKSGRSLHAGIISLLQ  180

Query  181  TSNGIRLITIRNKTRYHVTAQGCMALSGDQTVRFHDVYSSSFKGKGTTAGHADFNINIEC  240
            TSNGIRLITIRNKTRYHVTAQGCMALSGDQTVRFHDVYSSSFKGKGTTAGHADFNI IEC
Sbjct  181  TSNGIRLITIRNKTRYHVTAQGCMALSGDQTVRFHDVYSSSFKGKGTTAGHADFNIGIEC  240

Query  241  TERIKPTITFSARTISDAPESIIQLNRTNATNTAKGVGVQILYMGTPVPIGKPFAVGYSD  300
            TERI PTITFSARTI++APESIIQLN+ N+TNTAKGVGVQILYMGTPVPIGKPF VG SD
Sbjct  241  TERIEPTITFSARTINGAPESIIQLNKDNPTNTAKGVGVQILYMGTPVPIGKPFVVGHSD  300

Query  301  RNSRYNLPFTARYYQTDDRITGGKANAIAHFTVQYE  336
            RN+RYNLPFTARYYQTDDRIT+GKANA AHFTVQYE
Sbjct  301  RNARYNLPFTARYYQTDDRITAGKANATAHFTVQYE  336

2) phfB in NC_012962


> AF346500|8|G8|27479647|AAO17174.1|Photorhabdus_luminescens_W14|+|9016..10026|phfB|-|PhfB
Length=336

 Score =  297 bits (1111),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 166/342 (49%), Positives = 249/342 (73%), Gaps = 6/342 (1%)

Query  1    MKHYLWLFIASILLLNSNKSFAECHLNPNAKPISLYFNLKESEQDINKANNKDINVKTFS  60
            MK YL+L+I+++LL++ NK +A C  ++ + + ++YF+L+    ++N +N K I+V  FS
Sbjct  1    MKSYLRLLISAVLLFSINKVYAACISESTTSSGTVYFDLNSLKLNLNTSNTKSIHVARFS  60

Query  61   AEQIASEMGIDVNAPIFLCDEENISLMFGDSVLTGKSANTEHGTGGLKIIEDKLYLYFVI  120
            AEQ+AS MG+++N PIF CD++   L+FG+SV  + ++NTEHGTG L    D+LYLYFV 
Sbjct  61   AEQLASSMGLNINDPIFSCDDNGY-LVFGESVYPSMAGNTEHGTGKLTTGIDNLYLYFVA  119

Query  121  SGGNIGKIGYPKADGTNYSYNLGTRKKITWKDIGNVSIYLHKKGAINSGKSLSSGVIFKL  180
            S GN+ ++ YP  DG +Y Y    +KKITWKDIG++ +YL K GAI+SG+SL +G+I  L
Sbjct  120  STGNLNNMKYPTMDGRSYIYYPPEKKKITWKDIGDIDVYLYKEGAIKSGRSLHAGIISLL  179

Query  181  EALGSPKLNLISVRHSSTYRFRTMGCMTTTPSPKVNFGNVQGSLFKGKGTTAGHANFDII  240
            ++  S  + LI++R+ + Y+  + GCM+ +    V F +V +S FKGKGTTAGHA+F+I 
Sbjct  180  QT--SNGIRLITIRNKTRYHVTAQGCMALSGDQTVRFHDVYSSSFKGKGTTAGHADFNIG  237

Query  241  INCVENVKPKITFLGQKIKNPSDTPDSVIRLDNSNHVNTAKGVGVQILYYGTPISLGEPL  300
            I+C E + P ITF ++ I+   ++P+S+I+L++ N  NTAKGVGVQILY GTP+++G P+
Sbjct  238  IECTERIEPTITFSARTIN---GAPESIIQLNKDNPTNTAKGVGVQILYMGTPVPIGKPF  294

Query  301  VFGRTPADSSYTAHFTARYYQTRDKITGGTANATARFTIQYE  342
            V G++  ++ Y   FTARYYQT D+IT+G ANATA+FT+QYE
Sbjct  295  VVGHSDRNARYNLPFTARYYQTDDRITAGKANATAHFTVQYE  336