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PAthogenisity Island DataBase (PAI DB)

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Homologs of tnpD gene of AF141323

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSON53_15705
( YP_005457649.1 )

IS629 orf

NC_016822
(Shigella sonnei 53G)

8e-52

100

2) SSON53_21600
( YP_005458812.1 )

IS629 orf

NC_016822
(Shigella sonnei 53G)

8e-52

100

3) SDY_P210
( YP_406210.1 )

IS629 ORF2

NC_007607
(Shigella dysenteriae Sd197)

1e-51

4) S2182
( NP_837624.1 )

IS629 orfB

NC_004741
(Shigella flexneri 2457T)

2e-51

5) SFV_1917
( YP_689372.1 )

IS629 ORF2

NC_008258
(Shigella flexneri 8401)

3e-51

6) SSON53_15855
( YP_005457679.1 )

IS629 orf

NC_016822
(Shigella sonnei 53G)

5e-51

7) c3595
( NP_755470.1 )

transposase

NC_004431
(Escherichia coli CFT073)

3e-29

8) GDI_1065
( YP_001601338.1 )

transposase

NC_010125
(Gluconacetobacter diazotrophicus PAl 5)

4e-10

• Sequence Alignments

1) SSON53_15705 in NC_016822


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  196 bits (727),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  117
            NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

2) SSON53_21600 in NC_016822


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  196 bits (727),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  117
            NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

3) SDY_P210 in NC_007607


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  195 bits (725),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 117/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)

Query  1    MMPLLDKLREQYGVGPLCSELHIAPSTYYYCQQQRHHPDKRSARAQRDDWLKKEIQRVYD  60
            MMPLLDKLREQYGVGPLCSELHIAPSTYY CQQQRHHPDKRSARAQRDDWLKKEIQRVYD
Sbjct  1    MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYD  60

Query  61   ENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118
            ENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  61   ENHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

4) S2182 in NC_004741


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  194 bits (722),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 116/117 (99%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            MPLLDKLREQYGVGP+CSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  117
            NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

5) SFV_1917 in NC_008258


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  194 bits (720),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 116/117 (99%), Positives = 116/117 (99%), Gaps = 0/117 (0%)

Query  1    MPLLDKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            MPLLDKLREQYG GPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  117
            NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

6) SSON53_15855 in NC_016822


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  193 bits (716),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 116/117 (99%), Positives = 116/117 (99%), Gaps = 0/117 (0%)

Query  1    MLLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            M LLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  117
            NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATA  118

7) c3595 in NC_004431


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 81/127 (64%), Positives = 93/127 (74%), Gaps = 19/127 (14%)

Query  1    MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  60
            MPLLDKLREQYGVGP+CSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE
Sbjct  2    MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDE  61

Query  61   NHQVYGVRKV---------WRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTSAGK  111
            NH+VYGV+           W + L++  +       RL  +  ++GV R+ +    SAGK
Sbjct  62   NHKVYGVKSGVSCYGKVSEWPDALWHVSW-------RLWDLPVFSGVKRSVR---PSAGK  111

Query  112  PLLQVTA  118
            PL Q TA
Sbjct  112  PLPQATA  118

8) GDI_1065 in NC_010125


> AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD
Length=118

 Score = 57.6 bits (199),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 43/89 (49%), Positives = 62/89 (70%), Gaps = 1/89 (1%)

Query  2   MMAFIDAHREDLGIEPICRELAIAPSSYHEHAVRLadparrpararrddELKDEIKRVYD  61
           MM+++D  RE+ G+ P+C EL IAPS+Y +   +  +P +R+ARA+RDD LK EI+RVYD
Sbjct  1   MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYD  60

Query  62  ASSKLYGRAKSGIRCAVKALRWPNAPWNA  90
            + K+YG  KSG+ C  K   WP+A W+ 
Sbjct  61  ENHKVYG-VKSGVSCYGKVSEWPDALWHV  88