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Homologs of tnpD gene of AF141323

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EcE24377A_4842
( - )

NC_009801
(Escherichia coli E24377A)

e-197

99.7

2) EcE24377A_E0015
( - )

NC_009790
(Escherichia coli E24377A)

e-185

96.3

3) EcE24377A_E0026
( - )

NC_009790
(Escherichia coli E24377A)

e-184

95.8

4) EcE24377A_D0054
( - )

NC_009788
(Escherichia coli E24377A)

e-184

95.8

5) p1ECUMN_0016
( - )

NC_011749
(Escherichia coli UMN026)

e-177

93.8

6) p1ECUMN_0032
( - )

NC_011749
(Escherichia coli UMN026)

e-177

93.8

7) ECO26_p1-93
( - )

NC_013369
(Escherichia coli 11368)

e-163

94.8

8) ECO111_p3-90
( - )

NC_013366
(Escherichia coli 11128)

e-162

94.2

9) ECUMN_3343
( - )

NC_011751
(Escherichia coli UMN026)

e-156

94.5

• Sequence Alignments

1) EcE24377A_4842 in NC_009801


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 683 bits (1763), Expect = e-197
 Identities = 353/358 (99%)
 Strand = Plus / Plus

Query: 1   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcacaaggtatacggtgtgcgtaaagtctggcgtcagttgttacgggaaggtatcaga 240
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 184 aatcacaaggtatacggtgt----aaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

2) EcE24377A_E0015 in NC_009790


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 645 bits (1664), Expect = e-185
 Identities = 341/358 (95%)
 Strand = Plus / Plus

Query: 1   atgccactgctggataagctgcgtgagcagtacggggtcggaccggtatgcagcgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccattgtcagcaacagcgacatcatccggataaacgc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcacgacgactggctgaagagagagatacagcgcgtatacgatgaa 180
           |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtgtacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatcagg 240
           |||||  |||| ||||||    ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 184 aatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcacgtctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

3) EcE24377A_D0054 in NC_009788


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 640 bits (1651), Expect = e-184
 Identities = 339/358 (95%)
 Strand = Plus / Plus

Query: 1   atgccactgctggataagctgcgtgagcagtacggggtcggaccggtatgcagcgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccattgtcagcaacagcgacatcatccggataaacgc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcacgacgactggctgaagagagagatacagcgcgtatacgatgaa 180
           |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtgtacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatcagg 240
           |||||  |||| ||||||    ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 184 aatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

4) EcE24377A_E0026 in NC_009790


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 640 bits (1651), Expect = e-184
 Identities = 339/358 (95%)
 Strand = Plus / Plus

Query: 1   atgccactgctggataagctgcgtgagcagtacggggtcggaccggtatgcagcgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccattgtcagcaacagcgacatcatccggataaacgc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcacgacgactggctgaagagagagatacagcgcgtatacgatgaa 180
           |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtgtacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatcagg 240
           |||||  |||| ||||||    ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 184 aatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

5) p1ECUMN_0016 in NC_011749


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 618 bits (1596), Expect = e-177
 Identities = 334/360 (93%)
 Strand = Plus / Plus

Query: 2   tgatgccactgctggataagctgcgtaagctgtacggggtcggaccggtatgcagtgaac 61
           |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||
Sbjct: 2   tgatgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaac 61

Query: 62  tacatattgccccgtcaacgtattaccactgtcagcaacagcgacatcatcctgataaac 121
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62  tgcatattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaac 121

Query: 122 gcagtgcccgtgcgcagcgcgatgactggctgaagaaagagatactgcgcgtatacgatg 181
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 122 gtagtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatg 181

Query: 182 ggaatcatcaggtatacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatca 241
             |||||  |||||||||||    ||||||||||||||||||||||||||||||| ||||
Sbjct: 182 aaaatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatca 237

Query: 242 gggtagccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctcc 301
           | || |||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 238 gagtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctcc 297

Query: 302 ggggtaaaaaggtccgcactaccgtcagccggaaagccgttgccgcaggcgaccgcgtaa 361
           |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

6) p1ECUMN_0032 in NC_011749


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 618 bits (1596), Expect = e-177
 Identities = 334/360 (93%)
 Strand = Plus / Plus

Query: 2   tgatgccactgctggataagctgcgtaagctgtacggggtcggaccggtatgcagtgaac 61
           |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||
Sbjct: 2   tgatgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaac 61

Query: 62  tacatattgccccgtcaacgtattaccactgtcagcaacagcgacatcatcctgataaac 121
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62  tgcatattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaac 121

Query: 122 gcagtgcccgtgcgcagcgcgatgactggctgaagaaagagatactgcgcgtatacgatg 181
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 122 gtagtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatg 181

Query: 182 ggaatcatcaggtatacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatca 241
             |||||  |||||||||||    ||||||||||||||||||||||||||||||| ||||
Sbjct: 182 aaaatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatca 237

Query: 242 gggtagccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctcc 301
           | || |||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 238 gagtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctcc 297

Query: 302 ggggtaaaaaggtccgcactaccgtcagccggaaagccgttgccgcaggcgaccgcgtaa 361
           |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggggtaaaaaggtccgtacgaccatcagccggaaagccgttgccgcaggcgaccgcgtaa 357

7) ECO26_p1-93 in NC_013369


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 572 bits (1475), Expect = e-163
 Identities = 308/329 (94%)
 Strand = Plus / Plus

Query: 1   atgcctctgctggataagctgcgtgagcagtacggggtcggaccggtatgcagtgaactg 60
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatcctgataaacgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcgcgatgactggctgaagagagagatacagcgcgtatacgatgaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtatacggtgtgcgtaaagtctggcgccagttgttacgcgaaggtatcagg 240
           |||||  |||||||||||    ||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 184 aatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtactaccgtcagccg 329
           ||||||||||||||||| ||| |||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccg 328

8) ECO111_p3-90 in NC_013366


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 568 bits (1466), Expect = e-162
 Identities = 306/329 (93%)
 Strand = Plus / Plus

Query: 1   atgccgctgctggataagctgcgtgagcagtacggggtcggaccggtatgcagtgaactg 60
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatcctgataaacgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcgcgatgactggctgaagagagagatacagcgcgtatacgatgag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtatacggtgtgcgtaaagtctggtgccagttgttacgcgaaggtatcagg 240
           |||||  |||||||||||||    ||||||||| | ||||||||||| ||||||||||| 
Sbjct: 184 aatcacaaggtatacggtgt----aaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccgtactaccgtcagccg 329
           ||||||||||||||||| ||| |||||||
Sbjct: 300 ggtaaaaaggtccgtacgaccatcagccg 328

9) ECUMN_3343 in NC_011751


>AF141323|8|G8|5532453|AAD44737.1|Shigella_flexneri_5a_str._M90T|-|6368..6724|tnpD|-|TnpD 
          Length = 357

 Score = 548 bits (1415), Expect = e-156
 Identities = 294/314 (94%)
 Strand = Plus / Plus

Query: 1   atgccactgctggataagctgcgtgagcagtacggggtcggaccggtatgcagtgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 4   atgccactgctggataagctgcgtgagcagtacggggtcggaccgctatgcagcgaactg 63

Query: 61  catattgccccgtcaacgtattaccattgtcagcagcagcggcatcatcctgataaacgc 120
           |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||| 
Sbjct: 64  catattgccccgtcaacgtattaccactgtcagcaacagcgacatcatccggataaacgt 123

Query: 121 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agtgcccgtgcgcagcgcgatgactggctgaagaaagagatacagcgcgtatacgatgaa 183

Query: 181 aatcatcaggtgtacggtgtgcgtaaagtctggcgtcagttgttacgggaaggaatcagg 240
           |||||  |||| ||||||    ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 184 aatcacaaggtatacggt----gtaaagtctggcgtcagttgttacgggaaggtatcaga 239

Query: 241 gtggccagatgtacagtggcgcgcctcatggcggttatgggacttgccggtgttctccgg 300
           ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggccagatgcactgtggcacgtctcatggcggttatgggacttgccggtgttctccgg 299

Query: 301 ggtaaaaaggtccg 314
           ||||||||||||||
Sbjct: 300 ggtaaaaaggtccg 313


 Score = 64 bits (164), Expect = 2e-10
 Identities = 33/36 (92%)
 Strand = Plus / Plus

Query: 322 tcagccggaaaaccgttgctgcaggtgaccgcgtaa 357
           ||||||||||| ||||||| ||||| ||||||||||
Sbjct: 322 tcagccggaaagccgttgccgcaggcgaccgcgtaa 357