Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of SE0098 gene of NC_004461_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE0098
( NP_763653.1 )

hypothetical protein

NC_004461
(Staphylococcus epidermidis ATCC 12228)

2e-92

100

2) BN843_400
( YP_007867119.1 )

hypothetical protein

NC_021059
(Staphylococcus aureus M1)

7e-91

3) SAS0044
( YP_042174.1 )

hypothetical protein

NC_002953
(Staphylococcus aureus MSSA476)

4e-89

4) HMPREF0424_0495
( YP_003373736.1 )

hypothetical protein

NC_013721
(Gardnerella vaginalis 409-05)

1e-20

• Sequence Alignments

1) SE0098 in NC_004461


> NC_004461_R1|76|G76|27467016|NP_763653.1|Staphylococcus_epidermidis_ATCC_12228|+|63688..64317|-|SE0098|hypothetical 
protein
Length=209

 Score =  331 bits (1243),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%), Gaps = 0/209 (0%)

Query  1    MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT  60
            MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT
Sbjct  1    MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT  60

Query  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL  120
            FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL
Sbjct  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL  120

Query  121  SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISE  180
            SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISE
Sbjct  121  SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISE  180

Query  181  INVNQKIRKFDFSLLTNKIKKYKIQNNFE  209
            INVNQKIRKFDFSLLTNKIKKYKIQNNFE
Sbjct  181  INVNQKIRKFDFSLLTNKIKKYKIQNNFE  209

2) BN843_400 in NC_021059


> NC_004461_R1|76|G76|27467016|NP_763653.1|Staphylococcus_epidermidis_ATCC_12228|+|63688..64317|-|SE0098|hypothetical 
protein
Length=209

 Score =  326 bits (1223),  Expect = 7e-91, Method: Compositional matrix adjust.
 Identities = 206/209 (99%), Positives = 207/209 (99%), Gaps = 0/209 (0%)

Query  1    MNLRGHENRLKFHAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT  60
            MNLRGHENRLKF AKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT
Sbjct  1    MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT  60

Query  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL  120
            FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL
Sbjct  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL  120

Query  121  SNAINLIIICYEDNIKEPLSTIKYETDKYYYSEPYDSKIKAVNTIIGNLFDKKLVEKISE  180
            SNAINLIIICYE+NIKEPLSTIKYETDKYYYSEPYDSKIK VNTIIGNLFDKKLVEKISE
Sbjct  121  SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISE  180

Query  181  INVNQKIRKFDFSLLTNKIKKYKIQNNFE  209
            INVNQKIRKFDFSLLTNKIKKYKIQNNFE
Sbjct  181  INVNQKIRKFDFSLLTNKIKKYKIQNNFE  209

3) SAS0044 in NC_002953


> NC_004461_R1|76|G76|27467016|NP_763653.1|Staphylococcus_epidermidis_ATCC_12228|+|63688..64317|-|SE0098|hypothetical 
protein
Length=209

 Score =  320 bits (1200),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 201/209 (97%), Positives = 203/209 (98%), Gaps = 0/209 (0%)

Query  1    MNLRGHENRLKFLEKYDVTPISHLKLLEGQKKDGEGGRLTDSYYCFSYSLKDNSKKVLGT  60
            MNLRGHENRLKFL KYDVTPISHLKLLEGQKKDGEGG LTDSYYCFSYSLK+NSKKVLGT
Sbjct  1    MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGT  60

Query  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINKGNQLQGVTNKGNLDINRQRKQYNEVALQL  120
            FNCGYHIAEDLLKLSNQDKLPLFNPFKVIN GNQLQGVTNKGNL+INRQRKQYNEVALQL
Sbjct  61   FNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQL  120

Query  121  SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKAVNTIIGNLFDKKLVEKISE  180
            SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIK VNTIIGNLFDKKLVEKISE
Sbjct  121  SNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISE  180

Query  181  INVNQEIRKFDFSLLTNKIKKYEIQNNFE  209
            INVNQ IRKFDFSLLTNKIKKY IQNNFE
Sbjct  181  INVNQKIRKFDFSLLTNKIKKYKIQNNFE  209

4) HMPREF0424_0495 in NC_013721


> NC_004461_R1|76|G76|27467016|NP_763653.1|Staphylococcus_epidermidis_ATCC_12228|+|63688..64317|-|SE0098|hypothetical 
protein
Length=209

 Score = 93.3 bits (335),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 85/211 (41%), Positives = 125/211 (60%), Gaps = 8/211 (3%)

Query  1    MNCRGHETRQRIVRDYEVQPEAHIKLLANQQKHSDAGATIEDEYYVFSAKRKTDGKK--E  58
            MN RGHE R +++  Y+V P +H+KLL  Q+K+++ G+ + D YY FS   K ++KK   
Sbjct  1    MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGE-GGILTDSYYCFSYSLKGNSKKVLG  59

Query  59   VIQCGVDAAKDFLELINHKGLPLFNPLVGDPHVNNRQEYDNSGSGNL--QPKKWNETAKQ  116
             ++CG + A D+L L N+  LPLFNP+    + N+ Q   N G+ N+  Q K+ NE A Q
Sbjct  60   TFNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQ  119

Query  117  LYNAIMWLIILWDAKPNTPLFDFKDEVIEYKTYEPFDSKIKRVNTTIKNGSKGKTLTEMI  176
            L NAI  +II  +++ + PL  +K E   Y   EP+DSKIK VNT I N   +K L E I
Sbjct  120  LSNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLF-DKKLVEKI  178

Query  177  NVYRADNDIRDEICNFDILKNKIRDMKDQQG  207
            +    ++ IR    +F +L NKI+  K Q+ 
Sbjct  179  SEINVNQKIRK--FDFSLLTNKIKKYKIQNN  207