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PAthogenisity Island DataBase (PAI DB)

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Homologs of CMM_0093 gene of NC_009480_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CMM_0093
( YP_001220832.1 )

RND family transporter

NC_009480
(Clavibacter michiganensis NCPPB 382)

0.0

100

2) Sked_19760
( YP_003314735.1 )

RND superfamily drug exporter

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-130

3) Krad_2536
( YP_001362275.1 )

membrane transport protein

NC_009664
(Kineococcus radiotolerans SRS30216)

2e-130

4) MODMU_4194
( YP_006368060.1 )

transport protein, RND family

NC_017955
(Modestobacter marinus BC501)

6e-111

5) Sked_27410
( YP_003315478.1 )

RND superfamily drug exporter

NC_013521
(Sanguibacter keddieii DSM 10542)

7e-100

6) Kfla_1365
( YP_003379266.1 )

RND superfamily drug exporter-like protein

NC_013729
(Kribbella flavida DSM 17836)

2e-99

7) ydfJ3
( YP_007523611.1 )

Membrane protein ydfJ

NC_020504
(Streptomyces davawensis JCM 4913)

6e-98

8) SC8G12.12
( NP_631580.1 )

hypothetical protein

NC_003888
(Streptomyces coelicolor A3(2))

1e-97

9) SHJG_4637
( YP_006245781.1 )

transmembrane transport protein

NC_017765
(Streptomyces hygroscopicus 5008)

3e-97

10) SHJGH_4399
( YP_007693398.1 )

transmembrane transport protein

NC_020895
(Streptomyces hygroscopicus TL01)

3e-97

11) Svir_24210
( YP_003134243.1 )

putative RND superfamily drug exporter

NC_013159
(Saccharomonospora viridis DSM 43017)

4e-97

12) B737_2234
( YP_008458566.1 )

drug exporter of the RND superfamily

NC_022116
(Amycolatopsis mediterranei RB)

3e-92

13) RAM_11500
( YP_005530247.1 )

drug exporter of the RND superfamily protein

NC_017186
(Amycolatopsis mediterranei S699)

3e-92

14) AMES_2233
( YP_006548714.1 )

drug exporter of the RND superfamily

NC_018266
(Amycolatopsis mediterranei S699)

3e-92

15) AMED_2258
( YP_003764458.1 )

drug exporter of the RND superfamily

NC_014318
(Amycolatopsis mediterranei U32)

3e-92

16) Kfla_1282
( YP_003379184.1 )

MMPL domain-containing protein

NC_013729
(Kribbella flavida DSM 17836)

1e-90

17) Amir_3162
( YP_003100919.1 )

MMPL domain-containing protein

NC_013093
(Actinosynnema mirum DSM 43827)

5e-90

18) SCE87.17c
( NP_627382.1 )

membrane transport protein

NC_003888
(Streptomyces coelicolor A3(2))

2e-89

19) SVEN_3000
( YP_006878545.1 )

putative drug exporters of the RND superfamily

NC_018750
(Streptomyces venezuelae ATCC 10712)

6e-88

20) SACTE_2627
( YP_004803053.1 )

MMPL domain-containing protein

NC_015953
(Streptomyces sp. SirexAA-E)

7e-86

21) AMIS_23840
( YP_005462120.1 )

hypothetical protein

NC_017093
(Actinoplanes missouriensis 431)

1e-85

22) B446_16415
( YP_008386912.1 )

transmembrane transport protein

NC_021985
(Streptomyces collinus Tu 365)

3e-85

23) SAV_3618
( NP_824795.1 )

transmembrane transport protein

NC_003155
(Streptomyces avermitilis MA-4680)

1e-84

24) Svir_10910
( YP_003132974.1 )

putative RND superfamily drug exporter

NC_013159
(Saccharomonospora viridis DSM 43017)

6e-84

25) Strop_2987
( YP_001159803.1 )

MMPL domain-containing protein

NC_009380
(Salinispora tropica CNB-440)

9e-84

26) BLASA_2854
( YP_005329756.1 )

putative RND superfamily drug exporter

NC_016943
(Blastococcus saxobsidens DD2)

2e-83

27) AMIS_55580
( YP_005465294.1 )

hypothetical protein

NC_017093
(Actinoplanes missouriensis 431)

1e-82

28) Amir_2790
( YP_003100568.1 )

hypothetical protein

NC_013093
(Actinosynnema mirum DSM 43827)

1e-80

29) SGR_4318
( YP_001825830.1 )

transmembrane transport protein

NC_010572
(Streptomyces griseus NBRC 13350)

5e-80

30) Strvi_1118
( YP_004811158.1 )

MMPL domain-containing protein

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-79

31) O5Y_16935
( YP_008453953.1 )

hypothetical protein

NC_022115
(Rhodococcus erythropolis CCM2595)

3e-78

32) RER_36820
( YP_002767129.1 )

hypothetical protein

NC_012490
(Rhodococcus erythropolis PR4)

3e-78

33) F750_3010
( YP_007859968.1 )

putative drug exporters of the RND superfamily

NC_021055
(Streptomyces sp. PAMC26508)

1e-77

34) Sfla_3723
( YP_004924658.1 )

transmembrane transport protein

NC_016114
(Streptomyces flavogriseus ATCC 33331)

9e-78

35) ACPL_670
( YP_006263635.1 )

Membrane protein ydfJ

NC_017803
(Actinoplanes sp. SE50/110)

5e-76

36) CMN_01044
( YP_007685340.1 )

putative drug exporter, RND family

NC_020891
(Clavibacter michiganensis NCPPB 2581)

7e-76

37) XNR_2104
( YP_007745483.1 )

Membrane transporter

NC_020990
(Streptomyces albus J1074)

8e-76

38) CMM_1079
( YP_001221820.1 )

RND superfamily drug exporter

NC_009480
(Clavibacter michiganensis NCPPB 382)

7e-75

39) RSal33209_0276
( YP_001623446.1 )

MMPL family transporter

NC_010168
(Renibacterium salmoninarum ATCC 33209)

9e-75

40) CMS_1399
( YP_001710126.1 )

hypothetical protein

NC_010407
(Clavibacter michiganensis ATCC33113)

9e-74

41) SFUL_2814
( YP_007931641.1 )

Putative transmembrane transport protein

NC_021177
(Streptomyces fulvissimus DSM 40593)

1e-73

42) Bfae_15720
( YP_003154990.1 )

putative RND superfamily drug exporter

NC_013172
(Brachybacterium faecium DSM 4810)

2e-73

43) Celf_0364
( YP_004451896.1 )

putative integral membrane protein

NC_015514
(Cellulomonas fimi ATCC 484)

4e-73

44) SVEN_6136
( YP_006881681.1 )

putative drug exporters of the RND superfamily

NC_018750
(Streptomyces venezuelae ATCC 10712)

4e-72

45) AORI_4945
( YP_008013932.1 )

putative drug exporter of the RND superfamily

NC_021252
(Amycolatopsis orientalis HCCB10007)

5e-72

46) L083_5015
( YP_007953005.1 )

AlnT2 transporter

NC_021191
(Actinoplanes sp. N902-109)

9e-72

47) SBI_07050
( YP_004965301.1 )

membrane transport protein

NC_016582
(Streptomyces bingchenggensis BCW-1)

9e-72

48) Sros_6914
( YP_003342360.1 )

hypothetical protein

NC_013595
(Streptosporangium roseum DSM 43021)

5e-71

49) ACPL_5433
( YP_006268388.1 )

Putative membrane protein mmpL3

NC_017803
(Actinoplanes sp. SE50/110)

8e-71

50) HMPREF9154_2471
( YP_006512651.1 )

MMPL family protein

NC_018142
(Propionibacterium propionicum F0230a)

9e-71

51) SC3A4.16c
( NP_631151.1 )

hypothetical protein

NC_003888
(Streptomyces coelicolor A3(2))

1e-70

52) Namu_0993
( YP_003200391.1 )

MMPL domain-containing protein

NC_013235
(Nakamurella multipartita DSM 44233)

7e-70

53) L083_4308
( YP_007952298.1 )

MMPL domain-containing protein

NC_021191
(Actinoplanes sp. N902-109)

1e-69

54) Snas_5740
( YP_003514463.1 )

MMPL domain-containing protein

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-68

55) AMIS_34840
( YP_005463220.1 )

hypothetical protein

NC_017093
(Actinoplanes missouriensis 431)

6e-69

56) L083_5324
( YP_007953314.1 )

MmpL domain-containing protein

NC_021191
(Actinoplanes sp. N902-109)

2e-68

57) SCAB_76791
( YP_003493184.1 )

transporter

NC_013929
(Streptomyces scabiei 87.22)

7e-68

58) SACTE_3624
( YP_004804016.1 )

MMPL domain-containing protein

NC_015953
(Streptomyces sp. SirexAA-E)

3e-67

59) Strvi_6774
( YP_004816434.1 )

MMPL domain-containing protein

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-67

60) SBI_04396
( YP_004962647.1 )

membrane transport protein

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-67

61) Achl_1319
( YP_002487398.1 )

MMPL domain-containing protein

NC_011886
(Arthrobacter chlorophenolicus A6)

2e-66

62) SBI_02216
( YP_004960468.1 )

integral membrane protein

NC_016582
(Streptomyces bingchenggensis BCW-1)

9e-65

63) SBI_06238
( YP_004964489.1 )

integral membrane protein

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-64

64) Sfla_1192
( YP_004922160.1 )

hypothetical protein

NC_016114
(Streptomyces flavogriseus ATCC 33331)

2e-64

65) Sare_4042
( YP_001538823.1 )

MMPL domain-containing protein

NC_009953
(Salinispora arenicola CNS-205)

3e-64

66) Sked_06730
( YP_003313467.1 )

RND superfamily drug exporter

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-63

67) Strvi_5985
( YP_004815769.1 )

MMPL domain-containing protein

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-63

68) Pjdr2_5263
( YP_003013960.1 )

MMPL domain protein

NC_012914
(Paenibacillus sp. JDR-2)

1e-62

69) AAur_1412
( YP_947186.1 )

MMPL family protein

NC_008711
(Arthrobacter aurescens TC1)

1e-62

70) ydfJ
( YP_006661285.1 )

membrane protein YdfJ

NC_018531
(Arthrobacter sp. Rue61a)

2e-62

71) Franean1_3392
( YP_001507700.1 )

MMPL domain-containing protein

NC_009921
(Frankia sp. EAN1.pec)

2e-61

72) Franean1_3729
( YP_001508030.1 )

MMPL domain-containing protein

NC_009921
(Frankia sp. EAN1.pec)

3e-61

73) BN6_22620
( YP_007036456.1 )

hypothetical protein

NC_019673
(Saccharothrix espanaensis DSM 44229)

4e-61

74) Tcur_3529
( YP_003301103.1 )

MMPL domain-containing protein

NC_013510
(Thermomonospora curvata DSM 43183)

2e-60

75) Asphe3_12840
( YP_004240595.1 )

RND superfamily drug exporter

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

2e-60

76) Cwoe_0551
( YP_003392361.1 )

MMPL domain protein

NC_013739
(Conexibacter woesei DSM 14684)

2e-58

77) Micau_5175
( YP_003838258.1 )

MmpL domain-containing protein

NC_014391
(Micromonospora aurantiaca ATCC 27029)

6e-58

78) ydfJ1
( YP_007522839.1 )

Membrane protein ydfJ

NC_020504
(Streptomyces davawensis JCM 4913)

1e-57

79) ML5_3114
( YP_004082782.1 )

mmpl domain-containing protein

NC_014815
(Micromonospora sp. L5)

2e-57

80) SCAB_66061
( YP_003492146.1 )

hypothetical protein

NC_013929
(Streptomyces scabiei 87.22)

2e-55

81) SACTE_5687
( YP_004806016.1 )

MMPL domain-containing protein

NC_015953
(Streptomyces sp. SirexAA-E)

2e-54

82) Strvi_0392
( YP_004810460.1 )

MMPL domain-containing protein

NC_015957
(Streptomyces violaceusniger Tu 4113)

8e-54

83) SFUL_224
( YP_007929093.1 )

MMPL domain protein Precursor

NC_021177
(Streptomyces fulvissimus DSM 40593)

5e-47

• Sequence Alignments

1) CMM_0093 in NC_009480


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 723/723 (100%), Positives = 723/723 (100%), Gaps = 0/723 (0%)

Query  1    MSALLYRLGVLSARSRWavvaswllvlliaagvalSGMRFSSAGFDVPGTDSSRALSTLE  60
            MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISA  120
            SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISA
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISA  120

Query  121  DGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTElv  180
            DGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTELV
Sbjct  121  DGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTELV  180

Query  181  galvaflvllltfgSlvaaganmlgalvgvgvgvlgilaFSAIAPIGSVTPILAVMLGLA  240
            GALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLA
Sbjct  181  GALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLA  240

Query  241  VGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFL  300
            VGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFL
Sbjct  241  VGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFL  300

Query  301  GEMGIaaafavavavlmsltllpallSWMGRRALGRRERASTRSAGGSPRWTTTWIGAVL  360
            GEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAVL
Sbjct  301  GEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAVL  360

Query  361  RRPVIATFavvgglavvalpllgMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLV  420
            RRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLV
Sbjct  361  RRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLV  420

Query  421  VLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLV  480
            VLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLV
Sbjct  421  VLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLV  480

Query  481  RDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVAlivglsflllvllfrsflvplI  540
            RDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLI
Sbjct  481  RDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLI  540

Query  541  atggfllslgaalgstvaVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFL  600
            ATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFL
Sbjct  541  ATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFL  600

Query  601  VSRIHEAHRHGTSPREAVRAGFQQSapvvvaaaaimaavffgfaLSPsslvgsialalav  660
            VSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAV
Sbjct  601  VSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAV  660

Query  661  gvladallvRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAS  720
            GVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAS
Sbjct  661  GVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAS  720

Query  721  TRM  723
            TRM
Sbjct  721  TRM  723

2) Sked_19760 in NC_013521


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  460 bits (1735),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 409/733 (56%), Positives = 562/733 (77%), Gaps = 11/733 (1%)

Query  1    MARLLYRLGVLSARHRlvvllvwtvallglggIAATSAQLSEEE-GLPETESGLALDIVE  59
            M+ LLYRLGVLSAR R  V+  W + LL  +G+A ++ ++S    ++P T+S+ AL  +E
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  60   AQFGVPAADSLSELQLVLVADDITSDPAASVVRGLVADAQALPSVTSVADPLAPETPFVS  119
            ++F   ++++ + LQLV+ + +      A+ + + + +A+ +P+V +V+DPL P  P +S
Sbjct  61   SEFP-TTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSIS  119

Query  120  EDLTTAVVQISFTdlsddldaaaaaqhatedlaaSARASGLTAEVGGSLSVEPVELIGPT  179
             D +TA+ Q+  T    D + A       + +AA+ R  G++AE+GGSL+    E++GPT
Sbjct  120  ADGATAIAQV--TVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  180  EAVGATVAFLVLLVTYGSLAAAGANMIVALLGVIVGTVGIFAFSALVPVGSVTPILAIML  239
            E VGA VAFLVLL+T+GSL AAGANM+ AL+GV VG +GI+AFSA+ P+GSVTPILA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  240  GLAVGIDYGLFILARFRSELRDGRDVEDAVGRATGTAGTSVVFAGATVMIALAGLTVVGI  299
            GLAVGIDY LF+L+RFR+ELR GR V+DA+GRAT+TAG+SVVFAGATV+IAL GLTVVGI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  300  PTITEMGlaaasavlvavlmaltllPGLMSWMGRRALPRAERAHGRPDVPAAPTRTSFLE  359
            P + EMG+AAA AV VAVLM+LTLLP+L+SWMGRRAL R ERA  R+   ++P +T+   
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSA-GGSPRWTT---  353

Query  360  RWGRRVVSRpltalvpataillllavpvlslqtALTTPGGPDPDSTERAAYEMVADAFGA  419
             W   V+ RP+ A  +  + L ++A+P+L++QT+L  PGG DPDST+RAAY  VADAFG+
Sbjct  354  TWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGP  413

Query  420  GAQSPLVVLVEPDGADLQSALPSVESALAALDGVSAVAPAQTSPDGTTAIVTVVPTTGAI  479
            GAQ PLVVLV +D +D  SA+ +V + L++L  V++V+P+  S+DG+TA++TV++ +G++
Sbjct  414  GAQDPLVVLVRSD-SDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPL  472

Query  480  DPATDDLVEAIRGTSVDGVQMLVTGTTAFALDIAALLTSALMTYllvvvglslvllvllf  539
            D AT  LV  IR+ + D+  + VTG+TA+ALD    L SAL++Y+ ++VGLS++LLVLLF
Sbjct  473  DTATTSLVRDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLF  532

Query  540  rsllvplvATVGFLLSLGAGLGVMVAVFQWGWLDALIQAPQGDPVPSLLPILVVGILFGL  599
            RS+LVPL+AT GFLLSLGA+LG  VAVFQWGWLD+++QAPQG+P+ SLLPI+V GILFGL
Sbjct  533  RSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGL  592

Query  600  AMDYQVFLVSRMHEAHRAGMAPSDAIVEGFRRSatvvaaaasimaavFGGFALGLDPLVG  659
            AMDYQVFLVSR+HEAHR G +P +A+  GF++SA VV AAA+IMAAVF GFAL+  +LVG
Sbjct  593  AMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVG  652

Query  660  SIALALSVGVLADAFVVRMVVVPALLALLGEKAWWIPRWLGRILPDLDPEGHALDDSPTS  719
            SIALAL+VGVLADA++VRM++VPALL+LLG  AWWIPRWL+++LP +D EG A+DD    
Sbjct  653  SIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRR-  711

Query  720  VETQQRELAGQSL  732
             E+   ELA+  +
Sbjct  712  -EAAPNELASTRM  723

3) Krad_2536 in NC_009664


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  460 bits (1733),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 431/752 (58%), Positives = 594/752 (79%), Gaps = 37/752 (4%)

Query  27   MARLLYRLGAFSARHRIAFLIGWlvalgvlvvtaltgMRFSDGSFDVQGTESSRALTTVQ  86
            M+ LLYRLG +SAR R A + +WL+ L +    AL+GMRFS ++FDV GT+SSRAL+T++
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  87   EDFPS-GPSDSSLQLVTRAEAGAISDPAHAQDLQTALQQIRDLPHVTSVSDPLDPTNPRV  145
             +FP+ G + +SLQLV ++ +G ++D  +A  L +AL+Q R +P V +V+DPLDP+ P +
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTD--DAPSLTSALEQARVIPGVLAVTDPLDPARPSI  118

Query  146  SGDGstavatvtveevseheaDRVHQSVVDVAKTLRADGFDAEVGGTLANPIPQILGPTE  205
            S+DG+TA+A VTV ++ E++AD V   +  VA  LR +G  AE+GG+L++++P+ILGPTE
Sbjct  119  SADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTE  178

Query  206  IvgallafgvlvltfgSlvaaganmagallgvgvgilgvlaasvvHPIGSTTPILAVMLG  265
            +VGAL+AF VL+LTFGSLVAAGANM GAL+GVGVG+LG+LA S + PIGS TPILAVMLG
Sbjct  179  LVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLG  238

Query  266  LAVGIDYCLFVIARFRSELLAGRDVLDAIGRATGTAGSSVVFAAATVIIALAGLSLVGIS  325
            LAVGIDYCLFV++RFR+EL +GR V DAIGRAT+TAGSSVVFA+ATVIIAL GL++VGI+
Sbjct  239  LAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIP  298

Query  326  FITEMGlaaafavlvavlmtltflPGLLAGMGHralsrrdrrrleagraYAqqeehthds  385
            F+ EMG+AAAFAV VAVLM+LT+LP+LL+ MG+RAL+RR                     
Sbjct  299  FLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRR---------------------  337

Query  386  hdeshqtAREAAHRAS-TPGFLRSWVLLVTRRPIvsalsaivvllvaavpvlslsTTLNN  444
                    R +++ A+ +P    +W+  V RRP++++++ +  L V A+P+L++ T+L  
Sbjct  338  -------ERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVI  390

Query  445  PGGEDPDSTQRAAYDLIAKEFGAGFQDPLVVLAEGDAAALTPSLPQVQKLIAGVEGVASV  504
            PGGEDPDSTQRAAY  +A  FG+G QDPLVVL  +D+ A ++++  V   ++++  VA+V
Sbjct  391  PGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDA-ASAVETVSTELGSLPNVATV  449

Query  505  TPALPSADGAAALLQVVPTTGPLDERTRELVLDLREHAADVPGVRLSVTGATALGLDSDQ  564
            +P+  SADG++A+L V++ +GPLD  T  LV D+R  + D  +V+  VTG+TA++LDSD+
Sbjct  450  SPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDDSTSVQ--VTGSTAIALDSDE  507

Query  565  QLRDalatylvvvvglallllivMFRSILVPVIATLGFLLSLGAGIGAAVAVFQWGWLDA  624
            QLR AL +Y+ ++VGL++LLL+++FRS+LVP+IAT GFLLSLGA++G++VAVFQWGWLD+
Sbjct  508  QLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDP  567

Query  625  VIPAPQGNPLLSLLPIILTGILFGLAMDYQVFLVSRMHEAHVRGASPRQAIIDGFSRSap  684
            ++ APQGNPLLSLLPII+TGILFGLAMDYQVFLVSR+HEAH +G+SPR+A+  GF +SAP
Sbjct  568  IVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAP  627

Query  685  vvvaaasimaavFGGFALSHSSLVASIALGLAVGVIADAFLVRMIFVPATLALLGRTAWW  744
            VVVAAA+IMAAVF GFALS SSLV+SIAL+LAVGV+ADA+LVRMI+VPA L+LLGR+AWW
Sbjct  628  VVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWW  687

Query  745  MPRWLERVLPHLDTEGLSLEDAEHRLDHRPDQ  776
            +PRWL+++LP +D EG +++D  +R +  P++
Sbjct  688  IPRWLDKLLPTIDVEGAAFDD--DRREAAPNE  717

4) MODMU_4194 in NC_017955


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  395 bits (1486),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 365/733 (50%), Positives = 549/733 (75%), Gaps = 23/733 (3%)

Query  1    MSTFLSRVGRLSARFRWAVVGAWIVVFAAFIGVLVVGSSGDPAGDAEVSIPESQASLALE  60
            MS++L R+G LSAR RWAVV++W++V+    GV + G    +AG     +P +++S AL 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAG---FDVPGTDSSRALS  57

Query  61   RLDVEFPAAPDTGADLQLVFHPAAGDVTDPAVAQEIAGVITQAQDLPGVQAVSDPLDPAS  120
             L+ EFP++ ++ + LQLV ++++G VTD A    +++ + QA+ +PGV AV+DPLDPA 
Sbjct  58   TLESEFPTTGEATTSLQLVVQSSGGRVTDDA--PSLTSALEQARVIPGVLAVTDPLDPAR  115

Query  121  PYLAPDGTLAVATLTYGELTEDQQ----VEFYDAALALQENAPPTLGTELGGNLVPFGAP  176
            P +++DG+ A+A +T G++ E+Q      E+   A +L++++   +++E+GG+L +  + 
Sbjct  116  PSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQG---MAAEIGGSLTSAVPE  172

Query  177  EQGAGEAVGVIVAFLVLALTFGSLVTAGVNlliaafgvgvglvgvlaYGSLTPIDGNSIV  236
              G+ E VG +VAFLVL LTFGSLV+AG N+L A  GVGVG++G+LA+++++PI++ + +
Sbjct  173  ILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPI  232

Query  237  LTAMLGLAVGIDYSLFILFRFRNELRAGRTVDDaiaratgtagtavvfagltvIVALAAF  296
            L+ MLGLAVGIDY LF+L RFR ELR+GR V+DAI+RAT+TAG++VVFAG TVI+AL ++
Sbjct  233  LAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGL  292

Query  297  MVAGLSFITQMGLAGAFGvliavllaltllpavMRFLGMRALSKKHRKAIARGELWNEEQ  356
             V G++F+ +MG+A+AF+V +AVL++LTLLPA++  +G RAL++++R +      ++   
Sbjct  293  TVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAST-----RSAGG  347

Query  357  SQRRGIMSRWGGFVVERPLIALVGGVLVMIVMAVPLLSMKTAFSVPGGADPTSTERTAYD  416
            S R+   + W G V+ RP+IA  + V  + V+A+PLL+M+T++ +PGG DP ST+R+AY 
Sbjct  348  SPRWT--TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  417  LIVDEFG-GIQSPLIVLAEGDqvatqaatvqtqltgl-tgvqSVAPAEISADGDTARLIV  474
             + D FG G Q PL+VL  +D  A+ A    +   G    V +V+P+ +SADG TA L V
Sbjct  406  TVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTV  465

Query  475  IPSGGPIDDSTEDLVHQIRDNADSVSGVHLEVTGETAIGIDQDAQLMSALIKYvivivvi  534
            I+ +GP+D +T  LV++IR  +D  ++V+  VTG TAI++D D QL SALI YV +IV +
Sbjct  466  IAESGPLDTATTSLVRDIRALGDDSTSVQ--VTGSTAIALDSDEQLRSALIAYVALIVGL  523

Query  535  siillivlfrslliPVIATLGFLLSVGASFGASVAVFQWGWLDPLIAAPQGDPMlsllpl  594
            S++LL++LFRS+L+P+IAT GFLLS+GA++G++VAVFQWGWLDP++ APQG+P+LSLLP+
Sbjct  524  SFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPI  583

Query  595  llvgvlfglAMDYQVFLVSRIQEMYRTGVDSRTAIREGFGRSAPVLVAAASIMVVVFAGF  654
            ++ G+LFGLAMDYQVFLVSRI+E  R G  +R A+R GF +SAPV+VAAA+IM  VF GF
Sbjct  584  IVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGF  643

Query  655  ATSSFAVGASIAFGLMVGVAADAFIVRMVLMPALLSLLGRSAWWIPRWLDEIIPDVDVEG  714
            A S+ ++ +SIA++L VGV ADA++VRM+L+PALL+LLGRSAWWIPRWLD ++P +DVEG
Sbjct  644  ALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEG  703

Query  715  HSLDSHEPEPTRQ  727
             ++D +  E++ +
Sbjct  704  AAFDDDRREAAPN  716

5) Sked_27410 in NC_013521


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  358 bits (1346),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 375/722 (52%), Positives = 540/722 (75%), Gaps = 20/722 (2%)

Query  1    MSTFLSRLGRFSAGHRLVVVGVWLAVFAGLAGILGVNGSGESAPE-TIPGSRASQALEVM  59
            MS++L RLG +SA  R  VV+ WL V+   AG+ +++G   S++   +PG+ +S+AL  +
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGV-ALSGMRFSSAGFDVPGTDSSRALSTL  59

Query  60   NREFPSTEAPAGGTLQLVFapadatvtdptvtaGIQDVLTEAASLPGVQTVSDPFDPAQP  119
            + EFP+T  ++  +LQLV     +       ++++   L +A  +PGV +V+DP+DPA+P
Sbjct  60   ESEFPTTGEATT-SLQLV--VQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARP  116

Query  120  FVSPDGSVAVATLTYGDLSEDGQVTSYDAALALQESAPAD--LGVELGGNLVPLGAES-G  176
             +S+DG+ A+A +T GD+ E+ Q     + L    ++  D  ++ E+GG+L +  +E  G
Sbjct  117  SISADGATAIAQVTVGDIDEE-QADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILG  175

Query  177  PGEvvgvlvaflvlvlTFGSMRaaganllvavfgvgvglvgvlaYGSITPIGENSIILAS  236
            P E+VG LVAFLVL+LTFGS+ AAGAN+L A+ GVGVG++G+LA+++I+PIG  + ILA 
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  237  MLGLAVGIDYSLFILSRFRTELRSGRSVEDSIARatgtagtavvfagltvIVALAALMVA  296
            MLGLAVGIDY LF+LSRFR+ELRSGR V+D+I+RAT+TAG++VVFAG TVI+AL +L V 
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  297  GIGFITEMGMAGAFGvlvavllsltllpvlMKTLGVKALSKKHRRALAAGVLVDEDATPT  356
            GI F+ EMG+A+AF+V VAVL+SLTLLP L+  +G +AL++++R +          A  +
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS-------TRSAGGS  348

Query  357  RGFVRRWGQAVVRRPvislvsgvvvllvvalpmlsMKTAFNVPGGTDPESTERTAYTVVL  416
                  W  AV+RRPVI+  + V  L VVALP+L+M+T++ +PGG DP+ST+R+AYT V 
Sbjct  349  PRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVA  408

Query  417  DAFG-GVQSPLIVLAEGD-DVASSTAALEDQLAQMPGVGQVIPAEVSADGQTARITVIPT  474
            DAFG G Q PL+VL  +D D AS+  ++  +L+ +P V+ V P+ VSADG TA +TVI+ 
Sbjct  409  DAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAE  468

Query  475  GGPIDDSTEDLVHQLREDGDSISGIHVEVTGETAIGIDQDAALADALVKYlvvivlisla  534
            +GP+D +T  LV+++R  GD  ++++V  TG TAI++D D  L  AL+ Y+ +IV +S+ 
Sbjct  469  SGPLDTATTSLVRDIRALGDDSTSVQV--TGSTAIALDSDEQLRSALIAYVALIVGLSFL  526

Query  535  llvllfrslliplvATLGFLLSVGASFGASVAVFQWGWLPALVNAPQGDPMlsllpillv  594
            LLVLLFRS+L+PL+AT GFLLS+GA++G++VAVFQWGWL ++V+APQG+P+LSLLPI++ 
Sbjct  527  LLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVT  586

Query  595  gvlfglAMDYQVFLVSRIKEMHDRGLSPKDAVVEGFSRSAPVLVAAATIMTVVFAGFATS  654
            G+LFGLAMDYQVFLVSRI E H +G SP++AV  GF +SAPV+VAAA+IM+ VF GFA S
Sbjct  587  GILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALS  646

Query  655  TFSVAASIAFGLMVGVLADAFVVRLVLMPALLSLMGKSAWWIPRWLDRVLPHVDVEGHAV  714
              S+ +SIA++L VGVLADA++VR++L+PALL+L+G+SAWWIPRWLD++LP +DVEG A 
Sbjct  647  PSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAF  706

Query  715  DQ  716
            D+
Sbjct  707  DD  708

6) Kfla_1365 in NC_013729


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  357 bits (1340),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 342/741 (47%), Positives = 516/741 (70%), Gaps = 23/741 (3%)

Query  1    MSRFLSRVGAFSAAHRLVVAGAWLVATALFAVLTITGAKFSDAAFSIGGAESTTALATMN  60
            MS +L R+G +SA  R  V ++WL+   + A ++++G +FS A+F + G++S+ AL+T++
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   KAFPAAPGPATGELMLVVEAPNGTSLAEPGAQKLVTDLVVRADALPEVLSAADPYDERRP  120
              FP++ G AT  L LVV+++ G    +  A  L + L  +A  +P VL+ +DP D  RP
Sbjct  61   SEFPTT-GEATTSLQLVVQSSGGRVTDD--APSLTSALE-QARVIPGVLAVTDPLDPARP  116

Query  121  FVAEDGSVAVSTLAV-DLEADQAA-VEHTLREAAVSLTGAGYTIELGGSLDDGPPEIASI  178
             ++ DG+ A++ ++V D++ +QA  V   L   A +L + G + E+GGSL  + PEI + 
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  TEaagvvvafvvlllTFGSLAAAGANMLTAlsgvvvgvlgvlawssvgggIQSTTLILGL  238
            TE  G +VAF+VLLLTFGSL AAGANM  +    V   +  +   S  + I S T IL++
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANM-LGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  239  MLGLAVGIDYALLILSRFRDELRRGADVTAAVARasgtagtsvvvagttvvialagLAIV  298
            MLGLAVGIDY L++LSRFR ELR G  V  A++RA++TAG+SVV AG+TV+IAL GL++V
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  299  QISFITEMGLGaafavvvavaasltvvpavLRTLGYKALPRRERPAADQSARAVVVADHT  358
             I+F+ EMG++AAFAV VAV  SLT++PA+L  +G +AL RRER+++  ++         
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAG---------  346

Query  359  EAASRSGLLRRWALLVVDRPVLSMltatvavaalavptlSLETELDPPGGPDPASSQRAA  418
             +++R      W   V+ RPV++ ++   ++A +A+P L+++T L  PGG DP S+QRAA
Sbjct  347  -GSPRWT--TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAA  403

Query  419  YNTVSEAFGAGEQNPLIVLF-EgagaastataatkeiaalagVVDVSPAQPAEGGNVAFL  477
            Y TV++AFG+G Q+PL+VL   +++AAS+  + + E+++L+ V  VSP+  + +G+ A L
Sbjct  404  YTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAML  463

Query  478  AVTPEYGPTDARTGELVNALRTAMADTEGAEVSVTGQTAVDVDVDSQLSSGLVTYlicvv  537
            +V +E GP D+ T  LV  +R A++D +++ V VTG TA+ +D D QL S+L++Y+  +V
Sbjct  464  TVIAESGPLDTATTSLVRDIR-ALGD-DSTSVQVTGSTAIALDSDEQLRSALIAYVALIV  521

Query  538  glsllllmlvFRSVAVPVLATAGFLMSLAAGLGVTVAVFQWGWAGSLVSLDEARPLASLM  597
            GLS+LLL+L+FRS  VP++AT+GFL+SL+A+LG TVAVFQWGW +++V   ++ PL SL+
Sbjct  522  GLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLL  581

Query  598  PLIVVGVLFGLAMDYQVFLVSRMHEAHRQGVHTRAAVLRGFGQASPivvaaatimaavfa  657
            P+IV G+LFGLAMDYQVFLVSR+HEAHR+G   R AV  GF Q S+ VV AA+ + A   
Sbjct  582  PIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGF-QQSAPVVVAAAAIMAAVF  640

Query  658  gfafsggdaMVASVGLALTVGVLVDALVVRMVLVPAALQLLGEASWWMPRWLDRVLPNVD  717
                 +  ++V+S++LAL+VGVL DAL+VRM+LVPA L LLG ++WW+PRWLD++LP +D
Sbjct  641  FGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTID  700

Query  718  TEGEALAQDETPETRQELAPS  738
             EG A+ +D    + +ELA++
Sbjct  701  VEGAAFDDDRREAAPNELAST  721

7) ydfJ3 in NC_020504


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  352 bits (1321),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 322/734 (44%), Positives = 508/734 (70%), Gaps = 21/734 (2%)

Query  1    MATFLYRLGRLAFRRRHFVALIWvalltlagvgaasapaagnssFSIPGTEAQKAFDLLE  60
            M+++LYRLG L+ R R  V   W+ +L +A+  A S+   ++++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   ERFPGSSADGATARVVFQAPDGHKLADADNKAAVEQAVKELGTGSEVVSVTDPFETK--S  118
              FP ++   ++ ++V Q+++G+    +D+ +++  A+ +    + V++VTDP++    S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRV---TDDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSEDGSVGYAQVRYEVSGMELEDSSKEALEHAADEARETGLTVEIGGDALQATPET-GST  177
            +S DG+ + AQV     + E  D     L+  A   R+ G++ EIGG    A PE  G+T
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EiigiavaavvlviTLGSLVAAGLPLLTALIGVGIGVSTITALANALELGSTTSTLAMMI  237
            E++G  VA +VL++T+GSLVAAG  +L AL+GVG+GV  I A++    +GS T+ LA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRAELAEGRDREEAVGRAAGTAGSAVVFAGLTVVIALVGLSVVNI  297
            GLAVGIDY LF++SR+RAEL  GR  ++A+GRA++TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgiaaagtvviavlialTMIPALLGYAGRKVQPAGEKSKLFGRKRTPSGKPNMGT  357
            P L  MGIAAA +V +AVL++LT++PALL+  GR+     E++      R+++G P   T
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS----TRSAGGSPRWTT  353

Query  358  RWASFVVRRPVAVLLFGIVG-LGAAAVPVTSLELGLPDDGSQPTSTTQRRAYDLLSEGFG  416
             W + V+RRPV +  F++VG L+  A+P+ +++ +L   G++   +TQR AY  ++++FG
Sbjct  354  TWIGAVLRRPV-IATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFG  412

Query  417  PGFNGPLMVVGDAKGSADPKAAATEVADEIKDLNGVVTVTPATFNKSGDTFTITVIPDSK  476
            PG ++PL+V+   ++ +D+ +A   V+ E+  L  V TV+P+  +  G T  +TVI++S 
Sbjct  413  PGAQDPLVVL--VRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESG  470

Query  477  PSSTETEDLVHAIRDTGAGIEADTDTEVLVSGTTAMNIDFSQKMNDALIPYlalvvglaf  536
            P  T T  LV+ IR  G     D  T V V+G+TA+ +D  +++  ALI+Y+AL+VGL+F
Sbjct  471  PLDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSF  525

Query  537  llliavFRSILVPLKaalgfllsvlaalgavvavfQWGWLSGLMGVEETGPIMSMMPIFM  596
            LLL+ +FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL  ++   +  P++S++PI++
Sbjct  526  LLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIV  585

Query  597  VGVVFGLAMDYEVFLVTRMREAYVHGEKPSQAVVTGFKHGarvvtaaavimmavfaGFIG  656
             G++FGLAMDY+VFLV+R++EA  HG  P +AV +GF+++A VV AAA IM AVF GF  
Sbjct  586  TGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFAL  645

Query  657  SSESMVKMIGFGLAIAVFFDAFVVRMAIVPAVLALLGKKAWWLPKWLDRALPNVDVEGEG  716
            S+ S+V  I+++LA++V+ DA++VRM +VPA+L+LLG+ AWW+P+WLD+ LP +DVEG +
Sbjct  646  SPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAA  705

Query  717  LTRLSEARATDADE  730
            +    + R + ++E
Sbjct  706  FD--DDRREAAPNE  717

8) SC8G12.12 in NC_003888


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  350 bits (1316),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 314/700 (45%), Positives = 507/700 (73%), Gaps = 15/700 (2%)

Query  23   WVAILvgagvassaapappEDSFSMPGTESQKAFDLLDEQFPAASAEGATARVVIRAPEG  82
            W+ +L+ A+  + ++   +  +F +PGT+S +A+  L+ +FP+++   ++ ++V++++ G
Sbjct  23   WLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSS-G  81

Query  83   AKISDAAGKDRVKDLVADLKGGPQVSSVDDPFEAN--AVSKDGTTAYASVTYKVNAMELT  140
            ++++D A    +   + + +  P V +V DP+++   ++S DG+TA A VT      E +
Sbjct  82   GRVTDDAPS--LTSALEQARVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQA  139

Query  141  DEARDSLTAATDGAREGGYTVETGGDAVVAEQEMGGTAELIGIGVAAIVLLLTFGSLVAA  200
            DE    L A + G R+ G + E GG    A  E+ G +EL+G  VA +VLLLTFGSLVAA
Sbjct  140  DEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAA  199

Query  201  GMPllsaiigvgigisaigalgstlelsattstlaMMIGLAVAIDYALFIVSRYRAEISe  260
            G  +L+A++GVG+G+ +I A+++   +++ T+ LA+M+GLAV+IDY LF++SR+RAE+  
Sbjct  200  GANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRS  259

Query  261  grapeeaagraVGTAGSAVVFAGLTVVVALAGLAIVNIPILTKMGLAAAGTVGIAVLIAL  320
            GR  ++A GRA +TAGS+VVFAG TV++AL GL++V IP+L  MG+AAA +V++AVL++L
Sbjct  260  GRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSL  319

Query  321  TLTPALLGFAGKRALSRKDRKAPAGARAASGKPKLGTRWARFVQRRPvtvlltavlglgv  380
            TL PALL+  G+RAL+R++R   A++R+A+G P+  T W   V RRPV   ++ V GL+V
Sbjct  320  TLLPALLSWMGRRALGRRER---ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAV  376

Query  381  iavPAAGMELGLPDEGSSAPDTTQRKAYDMLSESFGAGFNGPLMVTVDARGADDPKAAAD  440
            +A+P  GM+ +L   G+  PD+TQR AY  ++++FG+G ++PL+V V  R+  D+ +A +
Sbjct  377  VALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVE  434

Query  441  TVGEKITGLGEAAAVTPANFNEEGDTAVLTVMPKTGPSDVATESLVHDIRSLSGDIRADT  500
            TV+  + +L + A+V+P+  + +G TA+LTV++ +GP D AT SLV+DIR+L++D     
Sbjct  435  TVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDD-----  489

Query  501  GAAMLVTGATAMTIDFSQTLDDALIPYlalvvglaflllmlvfRSVLVPLKaalgfllsv  560
            ++++ VTG+TA+++D  + L  ALI+Y+AL+VGL+FLLL+L+FRS LVPL A+ GFLLS+
Sbjct  490  STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSL  549

Query  561  aaalgavvavfQWGWLADVFGVDQPGPIMSMMPIFMIGVVFGLAMDYEVFLVTRMREAYV  620
            +AALG+ VAVFQWGWL  +    Q  P++S++PI++ G++FGLAMDY+VFLV+R++EA  
Sbjct  550  GAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHR  609

Query  621  HGESAAESVTTGFTHGGRvvaaaaiiMISVFSGFILENDAMIKMMGFGLAIAVLFDAFVV  680
            HG S+ E+V +GF +++ VV AAA IM +VF GF L   +++  ++++LA++VL DA++V
Sbjct  610  HGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLV  669

Query  681  RMAIVPAVLALLGTKAWWLPRWLDRVLPNVDVEGEKLHRE  720
            RM +VPA+L+LLG  AWW+PRWLD++LP +DVEG  ++ +
Sbjct  670  RMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDD  709

9) SHJG_4637 in NC_017765


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  350 bits (1313),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 319/721 (45%), Positives = 499/721 (70%), Gaps = 19/721 (2%)

Query  1    MATFLYKLGRLAFRRRHFVALIWvalltlagvgaasapaagNTSFSIPGTEAQKAFDLLE  60
            M+++LY+LG L+ R R  V   W+ +L +A+  A S+   ++++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGMSADGATARVVFKAPKGEKMTDAVNKATVEKTVTQLRSGSEVASVADPYTG--HA  118
              FP  +   ++ ++V ++  G ++TD  + +++  ++ Q R  + V +V+DP      +
Sbjct  61   SEFPTTGEATTSLQLVVQS-SGGRVTD--DAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSKNGTIAYASVKYEVSGMELADSSKDALTDAAQDARDAGLTVEIGGDALSATPET-GSS  177
            +S +G+ A A V     + E AD     L   A + RD G++ EIGG   SA PE  G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EiigiavaavvlviTFGSLLAAGFPLLTAiigvgigvSAITALASALDLGTTTSTLASMI  237
            E++G  VA +VL++TFGSL+AAG  +L A++GVG+GV +I A+++   +G+ T+ LA M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRAELAEGREREDAAGRAVGTAGSAVVFAGLTVVIALVGLSVVNI  297
            GLAVGIDY LF++SR+RAEL  GR  +DA GRA +TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgiaaagtvaiavlialTMIPALLGYAGRRIKPAGQKSrllgggrtprkpgrpNM  357
            P L  MGIAAA +VA+AVL++LT++PALL+  GRR     +++   ++G +P        
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP------RW  351

Query  358  GTRWASFvvrrpvavlllgvlglgaaavpaaSLELGLPDDGSQPTSTTQRRAYDLLSEGF  417
             T W + V+RRPV   +  V GL+  A+P  +++ +L   G++   +TQR AY  ++++F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  418  GPGFNGPLMIVVDAKDSADPKAAFAEVGDEIKGLKDVVTVTPATPNKAGDTATITVVPDS  477
            GPG ++PL+++V  +  +D+ +A   V+ E+ +L +V TV+P+  +  G TA +TV+++S
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  478  KPSSTTTEDLVHAIRDKGADIARKTDSQVLVTGSTAMNIDVSQKLNDALLPYlalvvgla  537
             P  T+T  LV+ IR  G D      + V VTGSTA+ +D  ++L  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  538  flllivvfRSILVPLKAALGFLLSVMAALGAVVAVFQWGWLSGLMNVEETGPVMSMMPIF  597
            FLLL+++FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL  +++  +  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  598  MVGVVFGLAMDYEVFLVTRMREAYVHGEKPSQAVVTGFKHGarvvtaaavimiavFSGFI  657
            + G++FGLAMDY+VFLV+R++EA  HG  P +AV +GF+++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  658  GSSESMVKMIGFGLAIAVFFDAFLVRMAIVPAVLALLGKRAWWLPKWLDRALPNVDVEGE  717
             S+ S+V  I+++LA++V+ DA+LVRM +VPA+L+LLG+ AWW+P+WLD+ LP +DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  718  G  718
            +
Sbjct  705  A  705

10) SHJGH_4399 in NC_020895


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  350 bits (1313),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 319/721 (45%), Positives = 499/721 (70%), Gaps = 19/721 (2%)

Query  1    MATFLYKLGRLAFRRRHFVALIWvalltlagvgaasapaagNTSFSIPGTEAQKAFDLLE  60
            M+++LY+LG L+ R R  V   W+ +L +A+  A S+   ++++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGMSADGATARVVFKAPKGEKMTDAVNKATVEKTVTQLRSGSEVASVADPYTG--HA  118
              FP  +   ++ ++V ++  G ++TD  + +++  ++ Q R  + V +V+DP      +
Sbjct  61   SEFPTTGEATTSLQLVVQS-SGGRVTD--DAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSKNGTIAYASVKYEVSGMELADSSKDALTDAAQDARDAGLTVEIGGDALSATPET-GSS  177
            +S +G+ A A V     + E AD     L   A + RD G++ EIGG   SA PE  G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EiigiavaavvlviTFGSLLAAGFPLLTAiigvgigvSAITALASALDLGTTTSTLASMI  237
            E++G  VA +VL++TFGSL+AAG  +L A++GVG+GV +I A+++   +G+ T+ LA M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRAELAEGREREDAAGRAVGTAGSAVVFAGLTVVIALVGLSVVNI  297
            GLAVGIDY LF++SR+RAEL  GR  +DA GRA +TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgiaaagtvaiavlialTMIPALLGYAGRRIKPAGQKSrllgggrtprkpgrpNM  357
            P L  MGIAAA +VA+AVL++LT++PALL+  GRR     +++   ++G +P        
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP------RW  351

Query  358  GTRWASFvvrrpvavlllgvlglgaaavpaaSLELGLPDDGSQPTSTTQRRAYDLLSEGF  417
             T W + V+RRPV   +  V GL+  A+P  +++ +L   G++   +TQR AY  ++++F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  418  GPGFNGPLMIVVDAKDSADPKAAFAEVGDEIKGLKDVVTVTPATPNKAGDTATITVVPDS  477
            GPG ++PL+++V  +  +D+ +A   V+ E+ +L +V TV+P+  +  G TA +TV+++S
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  478  KPSSTTTEDLVHAIRDKGADIARKTDSQVLVTGSTAMNIDVSQKLNDALLPYlalvvgla  537
             P  T+T  LV+ IR  G D      + V VTGSTA+ +D  ++L  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  538  flllivvfRSILVPLKAALGFLLSVMAALGAVVAVFQWGWLSGLMNVEETGPVMSMMPIF  597
            FLLL+++FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL  +++  +  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  598  MVGVVFGLAMDYEVFLVTRMREAYVHGEKPSQAVVTGFKHGarvvtaaavimiavFSGFI  657
            + G++FGLAMDY+VFLV+R++EA  HG  P +AV +GF+++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  658  GSSESMVKMIGFGLAIAVFFDAFLVRMAIVPAVLALLGKRAWWLPKWLDRALPNVDVEGE  717
             S+ S+V  I+++LA++V+ DA+LVRM +VPA+L+LLG+ AWW+P+WLD+ LP +DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  718  G  718
            +
Sbjct  705  A  705

11) Svir_24210 in NC_013159


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  349 bits (1310),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 303/684 (45%), Positives = 475/684 (70%), Gaps = 20/684 (2%)

Query  48   PGTEAQQAAELMEERFPGSKTDGATARVVLQAPDGEQITAPEYQAAIGDVAAELAQGKQV  107
            PGT++ +A   +E  FP +    ++ ++V+Q+++G     +        +++ L Q++ +
Sbjct  48   PGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAP------SLTSALEQARVI  101

Query  108  QQVI---DPFQG--QTVSPDQTIAYIQVNYDASPLDLTDETRAALEDAAESAREAGLVAE  162
              V+   DP++    ++S+D + A  QV  +    + +DE  + L+  A + R+ G+ AE
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  163  IGGDALFTMPetgitev-igvivaavvlliTFGSLVAAGLPLITAligvgisvgiitvlt  221
            IGG    ++PE       +G +VA +VLL+TFGSLVAAG  ++ AL+GVG++V  I  ++
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  222  gvLELDSTTPILATMIGLAVGIDYALFIVSRYRAELAEGHEPLDAVGRATGTAGSAVVFA  281
            ++  ++S TPILA M+GLAVGIDY LF++SR+RAEL  G+   DA+GRAT+TAGS+VVFA
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  282  GLTVIIALACLFVVNIPILTKMGlaaagavvfavlvaltlIPALIGFAGKRLLPRKQRNG  341
            G TVIIAL  L VV IP+L  MG+AAA AV  AVL++LTL+PAL++  G+R L R++R +
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRER-A  340

Query  342  DAQDAEQKPRAGTRWARFVLRHRLPVLVVSIAALGVIAIPATDLQLGLPDDGAKSTDSTQ  401
             ++ A   PR  T W   VLR+ +      +++L+V+A+P  ++Q +L   G+   DSTQ
Sbjct  341  STRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQ  400

Query  402  RRAYDLIAQGFGPGTNGPLIVLVDAQNSDDPQaaadataraLQGLDNVAIAMPATFNPAG  461
            R AY  +A++FGPG+++PL+VLV  ++  D+ +A ++ +  L +L NVA   P+  ++ G
Sbjct  401  RAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADG  458

Query  462  DTAMLTVIPASAPSSAETETLVHDIRAEAGDIADATGANVLVTGQTAMGIDVSQKLDDAL  521
             TAMLTVI+ S+P  + T +LV+DIRA ++D     +++V VTG TA+++D  ++L  AL
Sbjct  459  STAMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSAL  513

Query  522  MPYlllvvglafvllmvvFRSILVPLKAALGFLLSVIGALGAVVAVFQWGWLADLFGVEQ  581
            ++Y+ L+VGL+F+LL+++FRS+LVPL A+ GFLLS+ +ALG+ VAVFQWGWL  +    Q
Sbjct  514  IAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQ  573

Query  582  TGPVMSLMPIILVGLVFGLAMDYEVFLVTRMREAYVHGESAHEAIVTGFKHGARVVTAAA  641
              P++SL+PII+ G++FGLAMDY+VFLV+R++EA  HG S++EA+ +GF+++A VV AAA
Sbjct  574  GNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAA  633

Query  642  LIMISVFAGFIGSDESMIKMIGFGLAIAVLFDAFVVRMTIVPAVLALLGKAAWWFPRPLD  701
             IM +VF GF  S  S++  I+++LA++VL DA++VRM +VPA+L+LLG++AWW+PR LD
Sbjct  634  AIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLD  693

Query  702  KFLPNVDVEGERLRHKLDDTEPAK  725
            K+LP +DVEG  + +   ++ P  
Sbjct  694  KLLPTIDVEGAAFDDDRREAAPNE  717

12) B737_2234 in NC_022116


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  333 bits (1248),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 332/731 (46%), Positives = 502/731 (69%), Gaps = 15/731 (2%)

Query  1    MATFLYRLGRFSFRRRalvaavwaavlvalglgaltlsgqlSNSVTIPGTESQRAVDQLT  60
            M+++LYRLG +S R R  V A W  VL+  +  AL+     S +  +PGT+S RA+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKFPQANAGGATARVIIEAPAGTTVTDAKGKAAVEALVGQLKTAPKVAAVVDPFQA--QS  118
              FP +  + ++ ++++++++G    DA   +++ + + Q +  P V AV DP+++   S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  ISPDRRVALAQVSYGAKAYELTDGDRQALLDTANAGRAAGFTIEFGGDAVQGAPatgate  178
            IS+D   A+AQV+ G    E +D     L   A + R  G + E+GG    + P   +  
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  g-lgvavaavvlvITFGSLLAAGIPLLTALIGVGTGMAGIFVASGFLELNSNTPILALMI  237
              +G  VA +VL++TFGSL+AAG  +L AL+GVG G+ GI+  S++  + S TPILA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRHELSIGRDPEEaagraagtagsaVVFAGLTVIIALAGLTVIGI  297
            GLAVGIDY LF++SR+R EL  GR  ++A GRA++TAGS+VVFAG TVIIAL GLTV+GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PFLGQMGvaaavtvaiavlialtllpailGFAGARVAGSRIRLRRKPV--EPTHGERWAR  355
            PFLG+MG+AAA +VA+AVL++LTLLPA+L+  G R  G R R   ++    P     W  
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIG  357

Query  356  FVGRHRIPvllvalagmavvalpalSMQLGLPNDSTAAPESTQHKAYEIASRSFGPGSNG  415
             V R+ +   +  ++G+AVVALP L+MQ +L   +   P+STQ+ AY   + +FGPG+++
Sbjct  358  AVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQD  417

Query  416  PLLVVVDVSSSTNRQAALGRAAADIQKLPDVAAVTPPRVNQNGDTALLTVIPKSGPSSAQ  475
            PL+V+V   S ++  +A+   ++++  LP+VA+V+P  V+ +G TA+LTVI+ SGP  + 
Sbjct  418  PLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  476  TEDLVAAIRTESGALETGTGAKLSVTGQTAANIDVSEKLSDAMLPYLALIVGLAFVLLML  535
            T  LV  IR+ ++      ++ + VTG TA  +D  E+L  A+++Y+ALIVGL+F+LL+L
Sbjct  476  TTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  536  VFRSVVVPLKATLGFLGSvaatfgavvavfQWGWLTDLLGVASTGPIMSMLPILLIGVLF  595
            +FRS +VPL AT GFL S++A++G+ VAVFQWGWL  ++  +   P++S+LPI++ G+LF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  596  GLAMDYQVFLVTRMREEHVHGAEPQEAMVTGFRHGARVVVAAALIMISVFAGFVLAESSL  655
            GLAMDYQVFLV+R++E H HG+ P+EA+ +GF+++A VVVAAA IM +VF GF L+ SSL
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  656  IQSIGFALAFGVLVDAFVVRMTLVPAVMSLLGRGAWWLPQWLDRILPDVDVEGEKLTKHL  715
            + SI++ALA GVL DA++VRM LVPA+++LLGR+AWW+P+WLD++LP +DVEG  +  + 
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710

Query  716  DEPEERELVGA  726
             E+   EL ++
Sbjct  711  REAAPNELAST  721

13) RAM_11500 in NC_017186


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  333 bits (1248),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 332/731 (46%), Positives = 502/731 (69%), Gaps = 15/731 (2%)

Query  1    MATFLYRLGRFSFRRRalvaavwaavlvalglgaltlsgqlSNSVTIPGTESQRAVDQLT  60
            M+++LYRLG +S R R  V A W  VL+  +  AL+     S +  +PGT+S RA+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKFPQANAGGATARVIIEAPAGTTVTDAKGKAAVEALVGQLKTAPKVAAVVDPFQA--QS  118
              FP +  + ++ ++++++++G    DA   +++ + + Q +  P V AV DP+++   S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  ISPDRRVALAQVSYGAKAYELTDGDRQALLDTANAGRAAGFTIEFGGDAVQGAPatgate  178
            IS+D   A+AQV+ G    E +D     L   A + R  G + E+GG    + P   +  
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  g-lgvavaavvlvITFGSLLAAGIPLLTALIGVGTGMAGIFVASGFLELNSNTPILALMI  237
              +G  VA +VL++TFGSL+AAG  +L AL+GVG G+ GI+  S++  + S TPILA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRHELSIGRDPEEaagraagtagsaVVFAGLTVIIALAGLTVIGI  297
            GLAVGIDY LF++SR+R EL  GR  ++A GRA++TAGS+VVFAG TVIIAL GLTV+GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PFLGQMGvaaavtvaiavlialtllpailGFAGARVAGSRIRLRRKPV--EPTHGERWAR  355
            PFLG+MG+AAA +VA+AVL++LTLLPA+L+  G R  G R R   ++    P     W  
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIG  357

Query  356  FVGRHRIPvllvalagmavvalpalSMQLGLPNDSTAAPESTQHKAYEIASRSFGPGSNG  415
             V R+ +   +  ++G+AVVALP L+MQ +L   +   P+STQ+ AY   + +FGPG+++
Sbjct  358  AVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQD  417

Query  416  PLLVVVDVSSSTNRQAALGRAAADIQKLPDVAAVTPPRVNQNGDTALLTVIPKSGPSSAQ  475
            PL+V+V   S ++  +A+   ++++  LP+VA+V+P  V+ +G TA+LTVI+ SGP  + 
Sbjct  418  PLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  476  TEDLVAAIRTESGALETGTGAKLSVTGQTAANIDVSEKLSDAMLPYLALIVGLAFVLLML  535
            T  LV  IR+ ++      ++ + VTG TA  +D  E+L  A+++Y+ALIVGL+F+LL+L
Sbjct  476  TTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  536  VFRSVVVPLKATLGFLGSvaatfgavvavfQWGWLTDLLGVASTGPIMSMLPILLIGVLF  595
            +FRS +VPL AT GFL S++A++G+ VAVFQWGWL  ++  +   P++S+LPI++ G+LF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  596  GLAMDYQVFLVTRMREEHVHGAEPQEAMVTGFRHGARVVVAAALIMISVFAGFVLAESSL  655
            GLAMDYQVFLV+R++E H HG+ P+EA+ +GF+++A VVVAAA IM +VF GF L+ SSL
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  656  IQSIGFALAFGVLVDAFVVRMTLVPAVMSLLGRGAWWLPQWLDRILPDVDVEGEKLTKHL  715
            + SI++ALA GVL DA++VRM LVPA+++LLGR+AWW+P+WLD++LP +DVEG  +  + 
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710

Query  716  DEPEERELVGA  726
             E+   EL ++
Sbjct  711  REAAPNELAST  721

14) AMES_2233 in NC_018266


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  333 bits (1248),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 332/731 (46%), Positives = 502/731 (69%), Gaps = 15/731 (2%)

Query  1    MATFLYRLGRFSFRRRalvaavwaavlvalglgaltlsgqlSNSVTIPGTESQRAVDQLT  60
            M+++LYRLG +S R R  V A W  VL+  +  AL+     S +  +PGT+S RA+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKFPQANAGGATARVIIEAPAGTTVTDAKGKAAVEALVGQLKTAPKVAAVVDPFQA--QS  118
              FP +  + ++ ++++++++G    DA   +++ + + Q +  P V AV DP+++   S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  ISPDRRVALAQVSYGAKAYELTDGDRQALLDTANAGRAAGFTIEFGGDAVQGAPatgate  178
            IS+D   A+AQV+ G    E +D     L   A + R  G + E+GG    + P   +  
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  g-lgvavaavvlvITFGSLLAAGIPLLTALIGVGTGMAGIFVASGFLELNSNTPILALMI  237
              +G  VA +VL++TFGSL+AAG  +L AL+GVG G+ GI+  S++  + S TPILA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRHELSIGRDPEEaagraagtagsaVVFAGLTVIIALAGLTVIGI  297
            GLAVGIDY LF++SR+R EL  GR  ++A GRA++TAGS+VVFAG TVIIAL GLTV+GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PFLGQMGvaaavtvaiavlialtllpailGFAGARVAGSRIRLRRKPV--EPTHGERWAR  355
            PFLG+MG+AAA +VA+AVL++LTLLPA+L+  G R  G R R   ++    P     W  
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIG  357

Query  356  FVGRHRIPvllvalagmavvalpalSMQLGLPNDSTAAPESTQHKAYEIASRSFGPGSNG  415
             V R+ +   +  ++G+AVVALP L+MQ +L   +   P+STQ+ AY   + +FGPG+++
Sbjct  358  AVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQD  417

Query  416  PLLVVVDVSSSTNRQAALGRAAADIQKLPDVAAVTPPRVNQNGDTALLTVIPKSGPSSAQ  475
            PL+V+V   S ++  +A+   ++++  LP+VA+V+P  V+ +G TA+LTVI+ SGP  + 
Sbjct  418  PLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  476  TEDLVAAIRTESGALETGTGAKLSVTGQTAANIDVSEKLSDAMLPYLALIVGLAFVLLML  535
            T  LV  IR+ ++      ++ + VTG TA  +D  E+L  A+++Y+ALIVGL+F+LL+L
Sbjct  476  TTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  536  VFRSVVVPLKATLGFLGSvaatfgavvavfQWGWLTDLLGVASTGPIMSMLPILLIGVLF  595
            +FRS +VPL AT GFL S++A++G+ VAVFQWGWL  ++  +   P++S+LPI++ G+LF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  596  GLAMDYQVFLVTRMREEHVHGAEPQEAMVTGFRHGARVVVAAALIMISVFAGFVLAESSL  655
            GLAMDYQVFLV+R++E H HG+ P+EA+ +GF+++A VVVAAA IM +VF GF L+ SSL
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  656  IQSIGFALAFGVLVDAFVVRMTLVPAVMSLLGRGAWWLPQWLDRILPDVDVEGEKLTKHL  715
            + SI++ALA GVL DA++VRM LVPA+++LLGR+AWW+P+WLD++LP +DVEG  +  + 
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710

Query  716  DEPEERELVGA  726
             E+   EL ++
Sbjct  711  REAAPNELAST  721

15) AMED_2258 in NC_014318


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  333 bits (1248),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 332/731 (46%), Positives = 502/731 (69%), Gaps = 15/731 (2%)

Query  1    MATFLYRLGRFSFRRRalvaavwaavlvalglgaltlsgqlSNSVTIPGTESQRAVDQLT  60
            M+++LYRLG +S R R  V A W  VL+  +  AL+     S +  +PGT+S RA+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKFPQANAGGATARVIIEAPAGTTVTDAKGKAAVEALVGQLKTAPKVAAVVDPFQA--QS  118
              FP +  + ++ ++++++++G    DA   +++ + + Q +  P V AV DP+++   S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  ISPDRRVALAQVSYGAKAYELTDGDRQALLDTANAGRAAGFTIEFGGDAVQGAPatgate  178
            IS+D   A+AQV+ G    E +D     L   A + R  G + E+GG    + P   +  
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  g-lgvavaavvlvITFGSLLAAGIPLLTALIGVGTGMAGIFVASGFLELNSNTPILALMI  237
              +G  VA +VL++TFGSL+AAG  +L AL+GVG G+ GI+  S++  + S TPILA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYRHELSIGRDPEEaagraagtagsaVVFAGLTVIIALAGLTVIGI  297
            GLAVGIDY LF++SR+R EL  GR  ++A GRA++TAGS+VVFAG TVIIAL GLTV+GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PFLGQMGvaaavtvaiavlialtllpailGFAGARVAGSRIRLRRKPV--EPTHGERWAR  355
            PFLG+MG+AAA +VA+AVL++LTLLPA+L+  G R  G R R   ++    P     W  
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIG  357

Query  356  FVGRHRIPvllvalagmavvalpalSMQLGLPNDSTAAPESTQHKAYEIASRSFGPGSNG  415
             V R+ +   +  ++G+AVVALP L+MQ +L   +   P+STQ+ AY   + +FGPG+++
Sbjct  358  AVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQD  417

Query  416  PLLVVVDVSSSTNRQAALGRAAADIQKLPDVAAVTPPRVNQNGDTALLTVIPKSGPSSAQ  475
            PL+V+V   S ++  +A+   ++++  LP+VA+V+P  V+ +G TA+LTVI+ SGP  + 
Sbjct  418  PLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  476  TEDLVAAIRTESGALETGTGAKLSVTGQTAANIDVSEKLSDAMLPYLALIVGLAFVLLML  535
            T  LV  IR+ ++      ++ + VTG TA  +D  E+L  A+++Y+ALIVGL+F+LL+L
Sbjct  476  TTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  536  VFRSVVVPLKATLGFLGSvaatfgavvavfQWGWLTDLLGVASTGPIMSMLPILLIGVLF  595
            +FRS +VPL AT GFL S++A++G+ VAVFQWGWL  ++  +   P++S+LPI++ G+LF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  596  GLAMDYQVFLVTRMREEHVHGAEPQEAMVTGFRHGARVVVAAALIMISVFAGFVLAESSL  655
            GLAMDYQVFLV+R++E H HG+ P+EA+ +GF+++A VVVAAA IM +VF GF L+ SSL
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  656  IQSIGFALAFGVLVDAFVVRMTLVPAVMSLLGRGAWWLPQWLDRILPDVDVEGEKLTKHL  715
            + SI++ALA GVL DA++VRM LVPA+++LLGR+AWW+P+WLD++LP +DVEG  +  + 
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710

Query  716  DEPEERELVGA  726
             E+   EL ++
Sbjct  711  REAAPNELAST  721

16) Kfla_1282 in NC_013729


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  328 bits (1229),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 312/723 (44%), Positives = 496/723 (69%), Gaps = 11/723 (1%)

Query  1    MANLLYRLGRFSYQRRRIVAAIWTFllvllgvgaltlggqtaNTFSIPGTESQRALDALA  60
            M+ LLYRLG +S + R+ V A W ++L++ +  AL+    ++  F +PGT+S RAL +L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   KDLPTasgasasvvvkapagkTLMDPAVKTAVGKTVAEVTKVPDVVAAVDPY--TSKAIS  118
             ++PT++ A++S+ +   ++   +      ++  ++ +   +P+V+A  DP   +  +IS
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA-PSLTSALEQARVIPGVLAVTDPLDPARPSIS  119

Query  119  PDGTTGLVQVQFGTTADELPEATKDAYDGLDA-LSSADLQvvpggtvvggppEI-GSTEa  176
            +DG+T++ QV  G   +E ++      D++ A L   ++    GG++ ++ PEI G+TE 
Sbjct  120  ADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTEL  179

Query  177  igvaiaavvlivTFGSLVAAGMTLLTALIGVVAGMAGLFLLTSVVEISSTAPILALMLGL  236
            +G  +A +VL++TFGSLVAAG  +L AL+GV  G+ G++ ++++  I+S +PILA+MLGL
Sbjct  180  VGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGL  239

Query  237  AVGIDYALFISSRHRSQLAEGMDPEESVARSTATAGSAVLFAGATVVIALAGLSLVGVPF  296
            AVGIDY LF+ SR R++L  G   +++++R+TATAGS+V+FAGATV+IAL GL++VG+PF
Sbjct  240  AVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPF  299

Query  297  ltamglaaaatvltavlvaltllpamlgFVGRRVLPRKLRQAGATAEPTEGFGFRWARLV  356
            L  MG+AAA +V  AVL++LTLLPA+L+ +GRR L R+ R +  +A  +      W   V
Sbjct  300  LGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAV  359

Query  357  TRFRvpivalgiiglgvlalpvQDMRLAMPDGATAPENSNQRIAYDLSAAAFGPGSNGPL  416
             R  V      + GL+V+ALP+ +M+ ++   +    +S QR AY   A AFGPG+++PL
Sbjct  360  LRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPL  419

Query  417  VVVVKTPDAQQSGALVEQVTGAAKGLKDVVAVQPGPASENGATRLISVIPASGPASEQTS  476
            VV+V++    ++++ VE V+    +L +V +V PGP S +G+T +++VI+ SGP    T+
Sbjct  420  VVLVRS--DSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATT  477

Query  477  DLVGELRDVIKPLAQNGAEVSVTGNTAIGVDVSQKLTDALPTYllvviglsflllllafr  536
             LV   RD I++L+++++ V VTG+TAI++D  ++L  AL +Y+ +++GLSFLLL+L FR
Sbjct  478  SLV---RD-IRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFR  533

Query  537  silVPLKATLGFLFTIGATFGITVGVFQLGWGAELLGVDTPGPLVSFLPIIMMGILFGLA  596
            S+LVPL AT GFL+++GA++G TV+VFQ GW   ++      PL+S+LPII+ GILFGLA
Sbjct  534  SFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLA  593

Query  597  MDYEVFIVSRVREEFVHGKHAAEATIQGVGHGARVVTAAALIMAAVFAGFILVHDPIIKT  656
            MDY+VF+VSR++E   HG  + EA   G  ++A VV AAA IMAAVF GF L   +++ +
Sbjct  594  MDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGS  653

Query  657  IGFGLTVGVLIDAFVVRMTLVPAVLTLLGDRAWWFPRWLDRITPKVDIEGETLRVEPKPA  716
            I+++L+VGVL DA++VRM LVPA+LTLLG  AWW+PRWLD++ P +D+EG ++  + + A
Sbjct  654  IALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREA  713

Query  717  EKD  719
              +
Sbjct  714  APN  716

17) Amir_3162 in NC_013093


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  325 bits (1221),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 351/727 (49%), Positives = 519/727 (72%), Gaps = 22/727 (3%)

Query  1    MATFLHRLGLASYRNRGAVVFAWL-VLLIGLGVGSAVFAGK--TVTTFSIPGQESTIALE  57
            M+++L RLG+ S R+R AVV +WL VLLI+ GV+   ++G   + + F +PG +S+ AL 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVA---LSGMRFSSAGFDVPGTDSSRALS  57

Query  58   RMRAEFGSGPSGASAQVVVRAPEGARITDQAIAGEVTTLVGALDK---LPGVTSATNPLN  114
             + +EF +   ++++  +V  + G+R+TD+A      +L +AL++   +PGV + T+PL+
Sbjct  58   TLESEFPTTGEATTSLQLVVQSSGGRVTDDA-----PSLTSALEQARVIPGVLAVTDPLD  112

Query  115  PAAPVVSADQAVAYSTVTYEAQAPDITDEQRKALLDALDGARQDGLTVEVTGEATREVVG  174
            PA P +SAD A A + VT      + +DE    L     G R++G++ E+ G  T  V  
Sbjct  113  PARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPE  172

Query  175  IGGPAEVIGvvvallvlalTYGSLVTAGMNMltavvgvgigalgitlltgFVELQSTTPI  234
            I GP+E++G +VA+LVL LT+GSLV+AG NML A+VGVG+G LGI  ++++  + S TPI
Sbjct  173  ILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPI  232

Query  235  LAVMLGLAVGIDYALFIVTRFRHELLDGRDVPSAIAMavgtagsavvtagitvviaLTGL  294
            LAVMLGLAVGIDY LF+++RFR EL  GR V  AI+ A +TAGS+VV AG TV+IAL GL
Sbjct  233  LAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGL  292

Query  295  AVAGIPFLTEMGvaaaatvvvavliavtlvpaalGFIGRRALPRRLRSGARPVDRGV--Y  352
            +V GIPFL EMG+AAA +V VAVL+++TL+PA L+ +GRRAL RR R+++R+ + +    
Sbjct  293  TVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWT  352

Query  353  rrwattttrnrwpvllvavaalavvavpaFSMQTSLAQRPAE--GSTQARAVEIVSEHFG  410
              W  +  R      +  V++LAVVA+P ++MQTSL    +E  +STQ  A   V++ FG
Sbjct  353  TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFG  412

Query  411  PGFTGPLLVLVEGDEVARHALE-VSSRAKELGDVAVVGQAQVNSDGTAALVNVVPASAPD  469
            PG  +PL+VLV +D  A  A+E VS+    L +VA V+ + V++DG++A++ V++ S+P 
Sbjct  413  PGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPL  472

Query  470  SAETIALVDELRSAVSGVDGARVYVTGTTAVGVDVSHRLDESLPTYlvlvvglalvllvl  529
             + T +LV ++R+   G D++ V VTG+TA+++D  ++L  +L +Y+ L+VGL+++LLVL
Sbjct  473  DTATTSLVRDIRAL--GDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  530  vfrsllvpvAGVLGFLLTVGASLGATTAVFQWGWLKDVVRAETTGPLMSLAPMMVTGILF  589
            +FRS+LVP+ +  GFLL++GA+LG+T AVFQWGWL  +V+A    PL+SL P++VTGILF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  590  GLAMDYQVFLVSRMHEAHAHGASPREAVVTGFRQaapvvvaaaaimfavfagfvPEGEAT  649
            GLAMDYQVFLVSR+HEAH HG+SPREAV +GF+Q+APVVVAAAAIM AVF GF     + 
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  650  IKPIAFALAIGILVDAVVVRMVAIPAALAIMGSAAWWLPRSL-RWLPVLDVEGAALERGG  708
            + +IA+ALA+G+L DA++VRM+ +PA L+++G +AWW+PR L + LP +DVEGAA++ + 
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710

Query  709  ASAVPQQ  715
              A P++
Sbjct  711  REAAPNE  717

18) SCE87.17c in NC_003888


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  324 bits (1214),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 317/741 (43%), Positives = 505/741 (69%), Gaps = 27/741 (3%)

Query  1    MATFLYKLGRLAFRRRHFVALIWvalltlagvgaasappagnssFSIPGTEAQKAFDLLE  60
            M+++LY+LG L+ R R  V   W+ +L +A+  A S+   ++++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGASADGATARVVFKAPAGETMTDAGNKATVEKTVDELADGSEVASVADPYTGN--A  118
              FP ++   ++ ++V ++++G    DA   +++  ++++    + V +V+DP      +
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSEDGTIAYASVKYDVSGMELEESTKDALEDAAQQARDAGLTVEIGGDALQAVPET-GAT  177
            +S DG+ A A V  +  + E  +     L+  A   RD G++ EIGG    AVPE  G+T
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EvigiavaavvlviTFGSLVSAGLPLLTALIGVGIGVSSITALASALELGSTTSILAMMI  237
            E++G  VA +VL++TFGSLV+AG  +L AL+GVG+GV +I A+++   +GS T+ILA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAVVNI  297
            GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgiaaagtvaiavlialTMIPALLGYAGRRVKPAGAKGKRLGRSRKGEPKPDRPA  357
            P L  MGIAAA +VA+AVL++LT++PALL+  GRR          LGR  ++  ++  ++
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRA---------LGRRERASTRS--AG  346

Query  358  GQPKANLGTRWASFVVRRPlavlllgviglgaaavpaaslelgLPDDGSQPTSTTQRRAY  417
            G P+    T W + V+RRP+   +  V GL+  A+P  +++ +L   G++   +TQR AY
Sbjct  347  GSPR--WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAY  404

Query  418  DLLSEGFGPGFNGPLMVVVDAKGSDAPKDAFTDVEQRIKGLDGVVAVAPPAPNKGGDTAT  477
              ++++FGPG ++PL+V+V  ++   +  A   V   + +L  V +V+P + + +G TA 
Sbjct  405  TTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAM  462

Query  478  ITVVPDSKPSSVQTEDLVHAIRDAGGDVEAKTGAETLVTGATAMNIDVSQKLNDALVPYl  537
            +TV+++S P    T  LV+ IR  G+D     ++   VTG+TA+ +D  ++L  AL++Y+
Sbjct  463  LTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYV  517

Query  538  vlvvglaflllivvFRSILVPLKAALGFLLSVMAALGAVVAVFQWGWLSGLMGVEETGPV  597
             L+VGL+FLLL+++FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL  ++   +  P+
Sbjct  518  ALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPL  577

Query  598  MSMMPIFMVGVVFGLAMDYEVFLVTRMREAYVHGEKPNQAVVTGFKHGarvvtaaavimm  657
            +S++PI++ G++FGLAMDY+VFLV+R++EA  HG  P +AV +GF+++A VV AAA IM 
Sbjct  578  LSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMA  637

Query  658  avfaGFIGSSESMVKMIGFGLAIAVFFDAFVVRMAIVPAVLALLGKKAWWLPKWLDRALP  717
            AVF GF  S+ S+V  I+++LA++V+ DA++VRM +VPA+L+LLG+ AWW+P+WLD+ LP
Sbjct  638  AVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLP  697

Query  718  NVDVEGEGLRTAAERGTGPDE  738
             +DVEG ++     R ++P+E
Sbjct  698  TIDVEGAAF-DDDRREAAPNE  717

19) SVEN_3000 in NC_018750


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  319 bits (1195),  Expect = 6e-88, Method: Compositional matrix adjust.
 Identities = 304/675 (46%), Positives = 475/675 (71%), Gaps = 14/675 (2%)

Query  61   GTEAQRAFDLLEERFPGAGADGATARVVFKAPEGQKMTD-PAHKAVVEETVAALRSGSDQ  119
            GT++ RA+  LE  FP +G   ++ ++V +++ G+   D P+  + +E++    R  ++ 
Sbjct  49   GTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQA----RVIPG-  103

Query  120  IVSVSDPYTA--QAVSQNGSTAYVSVAYKVNAMELTDATREALTDAGHDAQGKGLTVEVG  177
            +++V+DP  +   ++S +G+TA   V+      E +D     L   + + +++G++ E+G
Sbjct  104  VLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIG  163

Query  178  GDALQTMPET-GSGEivgvviagivlvlTFGSLVAAGLPLLTAiigvgigvssiTALANV  236
            G    ++PE  G+ E+VG ++A +VL+LTFGSLVAAG  +L A++GVG+GV +I A++ +
Sbjct  164  GSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAI  223

Query  237  LDLGSTTSTLAMMIGLAVGIDYALFIVSRYRAELAEGREKEDAAGRAVGTAGSAVVFAGL  296
              +GS T+ LA+M+GLAVGIDY LF++SR+RAEL  GR  +DA GRA +TAGS+VVFAG 
Sbjct  224  APIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGA  283

Query  297  TVVIALVGLAVVNIPMLTKMGFAAAGTVVIAVLIALTLIPAMLGFAGDKVIGRKQRKGTA  356
            TV+IALVGL+VV IP L  MG+AAA +V +AVL++LTL+PA+L+  G + +GR++R +T 
Sbjct  284  TVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTR  343

Query  357  KKSDKPNGGTRWARFVIRRPVMvlligvlglgaialPAASLEMGLPDDGVKPTSTTERRA  416
              ++ P   T W   V+RRPV+  +  V GL+ +ALP  +++ +L   G     +T+R A
Sbjct  344  SAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAA  403

Query  417  YDALSDGFGPGFNGPLLVVV--DGDKATADRTVST-IKGLEGWAAVTPATPNKAGDAAMI  473
            Y +++D+FGPG ++PL+V+V  D+D A+A  TVST + +L   A+V+P+  +  G +AM+
Sbjct  404  YTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAML  463

Query  474  TVVPKDRPSSGATETLVHDIR--GATGDDVLVTGATAMNIDFSQKMNDALVPYlalvvgl  531
            TV++   P   AT +LV+DIR  G  +  V VTG+TA+ +D  +++  AL++Y+AL+VGL
Sbjct  464  TVIAESGPLDTATTSLVRDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGL  523

Query  532  afllltvvfRSILVPLKaalgfllsvvaalgavvavfQWGWLGSLFGVEQTGPIMSMMPI  591
            +FLLL ++FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL+++    Q  P++S++PI
Sbjct  524  SFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPI  583

Query  592  FMVGVVFGLAMDYEVFLVTRMREAYVHGERPGEAIVTGFRHSarvvtaaavimiavFSGF  651
            ++ G++FGLAMDY+VFLV+R++EA  HG  P EA+ +GF++SA VV AAA IM AVF GF
Sbjct  584  IVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGF  643

Query  652  IGMTDQMIKMIGFGlavavlfdafvvRMAIVPAVLALLGHKAWWLPKWLDRLLPNVDVEG  711
                  ++  I+++LAV+VL DA++VRM +VPA+L+LLG+ AWW+P+WLD+LLP +DVEG
Sbjct  644  ALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEG  703

Query  712  EGLAETAPGQAKPDL  726
             ++ +     A  +L
Sbjct  704  AAFDDDRREAAPNEL  718

20) SACTE_2627 in NC_015953


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  312 bits (1169),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 320/725 (45%), Positives = 508/725 (71%), Gaps = 21/725 (2%)

Query  1    MATFLYKVGRLAFRRRWYVALVWVallglagfgaasastatsssfsIPGTEAQKAFDLLE  60
            M+++LY++G L+ R RW V   W+ +L +A+  A S+   +S++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   ERFPGGSADGATARVVFKAPEGEKMTDADNRADVRKIVGTLESGS--DQIASVADPYTAN  118
              FP  +   ++ ++V +++ G ++TD     D   + ++LE +     + +V+DP  + 
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTD-----DAPSLTSALEQARVIPGVLAVTDPLDPA  114

Query  119  --AVSEDGSTAYISVSYKVNSMELTDATRDSLEHAGEAARSDGLTVEIGGDALQVMPET-  175
              ++S DG+TA   V+      E +D     L+  + + R +G++ EIGG     +PE  
Sbjct  115  RPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEIL  174

Query  176  GVTEvigvaiaavvlviTFGSLIAAGLPLLTALIGVGIGVSLITALANVLDLGSTTSTLA  235
            G TE++G  +A +VL++TFGSL+AAG  +L AL+GVG+GV  I A++ +  +GS T+ LA
Sbjct  175  GPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILA  234

Query  236  MMIGLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAV  295
            +M+GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+V
Sbjct  235  VMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTV  294

Query  296  VNIPMLSKMGFAAAGTVAIAVLIALTLVPALLGVAGKQVMGRKARKAADAENKPDAKPNM  355
            V IP L+ MG+AAA +VA+AVL++LTL+PALL+  G++ +GR+ R ++     +++ P  
Sbjct  295  VGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAST---RSAGGSPRW  351

Query  356  GTRWARFVLRKPvwvllagvvglgviavpaaSLEMGLPDDGSQPRSTTQRQAYDLLSDGF  415
             T W   VLR+PV   +A V GL+V+A+P  +++ +L   G++   +TQR AY  ++D+F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  416  GPGFNGPLLVVVDTRNSSDGKTAVAQVSQGIEASGHVAAVTPATFNKAGDAATITVIPKD  475
            GPG ++PL+V+V  R+ SD+ +AV  VS  + +  +VA+V+P+  +  G +A +TVI+  
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  476  RPSSTDTENVVHAIRDAGADIKSETGAEVLVTGATAMNIDFSEKMNDALLPYlalvvgla  535
             P  T T ++V+ IR  G D     ++ V VTG+TA+ +D  E++  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  536  flllmvvfRSLLVPLKaalgfllsvvaalgavvavfQWGWLASLFGVEQTGPIMSMMPIF  595
            FLLL+++FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL ++    Q  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  596  MVGVVFGLAMDYEVFLVTRMREAYVHGETPGQAIVTGFRHGarvvtaaavimmavfaGFI  655
            + G++FGLAMDY+VFLV+R++EA  HG +P +A+ +GF+++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  656  GSSESMIKMIGFSLAIAVFFDAFVVRMAIVPAVLALLGRRAWWLPRWLDRALPSVDVEGE  715
             S+ S++  I+++LA++V+ DA++VRM +VPA+L+LLGR AWW+PRWLD+ LP++DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  716  GLRTE  720
            ++  +
Sbjct  705  AFDDD  709

21) AMIS_23840 in NC_017093


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  311 bits (1164),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 309/708 (44%), Positives = 487/708 (69%), Gaps = 31/708 (4%)

Query  21   AAWVLLLIAFAVGAATLSGP--TTSAFSIPGTESSRAMEVLAAKF-GTGDDNASAKVVFT  77
            A+W+L+L  +  ++ +LSG   ++++F +PGT+SSRA+  L + F  TG+  +S ++V  
Sbjct  21   ASWLLVL--LIAAGVALSGMRFSSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQ  78

Query  78   SS------------TALTADRLAPAVAALKELATVADPVYSQDKQSAYVTVGYDVPATDV  125
            SS            +AL   R+ P+V A+ +    A P  S D  +A   V  +    + 
Sbjct  79   SSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQ  138

Query  126  SIADREKLLAAGETARQSGIGVEFSGEVTRTVTES-HAAEAIGIIVAAFVLVITFGSLVA  184
            +      L A +   R+ G++ E++G +T +V E   ++E +G +VA +VL++TFGSLVA
Sbjct  139  ADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVA  198

Query  185  AGLPLVTAMVGVGVGMLGIQIATGFFDlssstsalatMLGLAVGIDYALFVVSRYRHEIa  244
            AG  ++ A+VGVGVG+LGI   +++  ++S T+ LA MLGLAVGIDY LFV+SR+R E+ 
Sbjct  199  AGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELR  258

Query  245  vgrggveaagravgtagSAVVFAGLTVIIALVALSVTGIPFLtamgvaaagtvavavvIT  304
             GR   +A GRA +TAGS+VVFAG TVIIALV+L+V GIPFL  MG+AAA +VAVAV+++
Sbjct  259  SGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMS  318

Query  305  LSLVPAVLGFAGNRILPRKHRADPAAVEHHAKVPFGERWARNVLRHRWIALIGSLVLIGA  364
            L+L+PA+L+  G R L R++RA   +    ++      W   VLR+   ++I+++ ++G+
Sbjct  319  LTLLPALLSWMGRRALGRRERASTRSAGGSPR--WTTTWIGAVLRR---PVIATFAVVGG  373

Query  365  Valpald---lrlalpddSTAAEDSTQRKAYDQLAEGFGAGFNGPLIVVIEAATGAARSA  421
            +A+ AL    ++ +L   +    DSTQR AY  +A++FG+G ++PL+V++ + ++AA + 
Sbjct  374  LAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAV  433

Query  422  AIQAQQLIGGIEDVVTVSDPVANQAGDTAMLTVIPGSSATSEATKDLVHDIRAHSLtgat  481
               + +L G++ +V TVS    +  G TAMLTVI+ S++   AT  LV+DIRA +  +++
Sbjct  434  ETVSTEL-GSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDDSTS  492

Query  482  mavtgatavNIDVSEKLTNALVPYLAIVVGLAFVLLMLVFRSILVPLKATIGFLLSIAAA  541
            + VTG+TA+ +D  E+L +AL++Y+A++VGL+F+LL+L+FRS+LVPL AT GFLLS++AA
Sbjct  493  VQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAA  552

Query  542  FGALVAVFQKGHLAGLIGLESTGPLVSIMPIFLIGILFGLAMDYEVFLVTRTREDFVHGA  601
            +G+ VAVFQ G L  ++      PL+S++PI++ GILFGLAMDY+VFLV+R +E   HG+
Sbjct  553  LGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGT  612

Query  602  SPDDAVISGMKHGARVVTAAALIMMSVFAGFILAADTIIKSLGFALAFGVAVDAFLVRMT  661
            SP +AV +G +++A VV AAA IM +VF GF L++ +++ S+++ALA GV  DA+LVRM 
Sbjct  613  SPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMI  672

Query  662  IVPAVLSLFGRSAWWLPRWLDRVMPNVDVEGEQLTRRLHEQAREAGRE  709
            +VPA+L+L+GRSAWW+PRWLD+++P +DVEG      ++++ REA+ +
Sbjct  673  LVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAA----FDDDRREAAPN  716

22) B446_16415 in NC_021985


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  309 bits (1160),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 325/743 (44%), Positives = 509/743 (69%), Gaps = 29/743 (3%)

Query  1    MATFLYKIGRLAFRRRHFVALIWvalltlagvgaasapaagnssFSIPGTEAQKAFDLLE  60
            M+++LY++G L+ R R  V   W+ +L +A+  A S+   ++++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGMSADGATARVVFKAPSGEKMTGKANKATVRATVKELRSGSEVTSVADPYTA--HA  118
              FP  +   ++ ++V ++ SG ++T+ A  +++ +++ + R  + V +V+DP  +   +
Sbjct  61   SEFPTTGEATTSLQLVVQS-SGGRVTDDA--PSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSRDGTVAYASVKYKVSGMELQdasrdalkaaakdardaGLTVEVGGDALTAAPET-GSS  177
            +S DG+ A A V     + E  D     L A A + RD G++ E+GG   +A PE  G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EiigiavaavvlviTFGSLLAAGFPLLTALIGVGIGVSTITALASALDLGTTTSTLASMI  237
            E++G  VA +VL++TFGSL+AAG  +L AL+GVG+GV  I A+++   +G+ T+ LA M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSRYrselaegrereeaagravgtagSAVVFAGLTVLIALVGLSVVNI  297
            GLAVGIDY LF++SR+R+EL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgvaaagtvaiavlialTLIPALLGYAGRRIKPTGEKSRLLGGGRKAKAGNPGGH  357
            P L  MG+AAA +VA+AVL++LTL+PALL+  GRR             GR+ +A+  ++ 
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRAL-----------GRRERASTRSAG  346

Query  358  GKQPRPNMGTRWASFVVRRPvavlllgviglgaaavpaaslelgLPDDGAQPTSTTQRRA  417
            G   +    T W + V+RRPV   +  V GL+  A+P  +++ +L   G++   +TQR A
Sbjct  347  GSPRWT---TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAA  403

Query  418  YDLLSEGFGPGFNGPLMVVVDAKDSAHPKKAFTEVGDEIKGLKDVVTVTPAVPNKAGDTA  477
            Y  ++++FGPG ++PL+V+V  +  +++  A   V+ E+ +L +V TV+P+  +  G TA
Sbjct  404  YTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTA  461

Query  478  TITVIPNSKPSSTTTEDLVHAIRGKGADLTSATDAKVLVTGSTAMNIDVSQRLNDALLPY  537
             +TVI++S P  T+T  LV+ IR+ G D      + V VTGSTA+ +D  ++L  AL++Y
Sbjct  462  MLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAY  516

Query  538  lalvvglaflllivvfRSVLVPLKAALGFLLSVMAALGAVVAVFQWGWLSGLMNVEQTGP  597
            +AL+VGL+FLLL+++FRS LVPL A+ GFLLS+ AALG+ VAVFQWGWL  +++  Q  P
Sbjct  517  VALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNP  576

Query  598  VMSMMPIFMVGVVFGLAMDYEVFLVTRMREAYVHGEKPSQAVVTGFRHGarvvtaaavim  657
            ++S++PI++ G++FGLAMDY+VFLV+R++EA  HG  P +AV +GF+++A VV AAA IM
Sbjct  577  LLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIM  636

Query  658  iavFSGFIGSSESMIKMIGFGLavavffdafvvRMAIVPAVLALLGRRAWWLPRWLDRAL  717
             AVF GF  S+ S++  I+++LAV+V+ DA++VRM +VPA+L+LLGR AWW+PRWLD+ L
Sbjct  637  AAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLL  696

Query  718  PNVDVEGEGLRTAEDRRTDPDGE  740
            P +DVEG ++   +DRR  +  E
Sbjct  697  PTIDVEGAAF--DDDRREAAPNE  717

23) SAV_3618 in NC_003155


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  308 bits (1153),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 318/737 (44%), Positives = 509/737 (70%), Gaps = 23/737 (3%)

Query  1    MATFLYKIGRFAFRRRHFVALIWvalltlagvgaasaptagsssfsIPGTEAQKAFDLLE  60
            M+++LY++G ++ R R  V   W+ +L +A+  A S+   +S++F +PGT++ +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   SRYPGMSADGATARVVFRAPSGEKMSaaankaavkktvkaLGDGSEVTSVTDPFKT--HS  118
            S +P  +   ++ ++V ++++G     A++ ++     + +   + V +VTDP+     S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVI---PGVLAVTDPLDPARPS  117

Query  119  LSKDGAIAYTQVRYDVSGMELKDASKDALNEAAQEARDTGLTVEVGGDALQAAPET-GST  177
            +S DGA A +QV  +  + E  D     L+  A   RD G++ E+GG    A PE  G+T
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  178  EvigiavaavvlviTFGSLIAAGLPLLTALIGVGIGVSTITALAKALDLGSTTSTLAMMI  237
            E++G  VA +VL++TFGSL+AAG  +L AL+GVG+GV  I A++    +GS T+ LA+M+
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  238  GLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAVVNI  297
            GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+VV I
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  298  PMLTKMgvaaagtvaiavlialTMIPALLGYTGRMVQPAGKKSKLLGGGRAAKKPARPNM  357
            P L  MG+AAA +VA+AVL++LT++PALL+  GR  ++ G++ +  ++ R+A  ++R   
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGR--RALGRRER--ASTRSAGGSPR--W  351

Query  358  GTRWASFvvrrpvavlllgvvglgaaavpaTSLELGLPDDGSQPTSTTQRRAYDLLSDGF  417
             T W + V+RRPV   +  V GL+  A+P  +++ +L   G++   +TQR AY  ++D+F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  418  GPGFNGPLMVVVDAKSSTHPKAAVTKVTDTVKDLKGVVSVTPATYNKAGDTAMITVVPDS  477
            GPG ++PL+V+V  +S +++ +AV  V+  +  L  V +V+P+  +  G TAM+TV+++S
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  478  KPSSVKTEDLVHAIRDAGGEIKAGTDAEVLVTGTTAMNIDFSQKLNDALVPYlalvvgla  537
             P    T  LV+ IR  G++      + V VTG+TA+ +D  ++L  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  538  flllivvfRSVLVPLKAALGFLLSVMAALGAVVAVFQWGWLAGLMGVEETGPIMSMMPIF  597
            FLLL+++FRS LVPL A+ GFLLS+ AALG+ VAVFQWGWL  ++   +  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  598  MVGVVFGLAMDYEVFLVTRMREAYVHGEKPAQAIVTGFKHGarvvtaaavimiavFSGFI  657
            + G++FGLAMDY+VFLV+R++EA  HG  P +A+ +GF+++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  658  GSSESMIKMIGFGLAIAVFFDAFVVRMAIVPAVLALLGKRAWWLPKWLDRALPNVDVEGE  717
             S+ S++  I+++LA++V+ DA++VRM +VPA+L+LLG+ AWW+P+WLD+ LP +DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  718  GLRAHDTDRPKDGDADE  734
            ++   D DR +++ ++E
Sbjct  705  AF---DDDR-REAAPNE  717

24) Svir_10910 in NC_013159


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  305 bits (1144),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 316/673 (47%), Positives = 480/673 (72%), Gaps = 17/673 (2%)

Query  41   TTNSVTIPGTEAQQAIDRLEERFPEAGVGKGSVNVAVAPPEGQQLDPQIVAGLVKNLGEA  100
            ++ +  +PGT++ +A+  LE  FP +G +  S+++ V ++ G+  D    ++L   L +A
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDA--PSLTSALEQA  98

Query  101  ---PNVATVTDPFQTK--SIAPDGSLALIQVVYRMPSPEVTdadrdalqaaaqSTRDAGW  155
               P V +VTDP++    SI++DG+ A+ QV       E +D     L+A A + RD G 
Sbjct  99   RVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGM  158

Query  156  TVEFGGDAMQGIP-VTQPTEgigvivaavvlivTFGSLVAAGLPLVTALIGVGIGMAGIT  214
            + E+GG    ++P +  PTE +G +VA +VL++TFGSLVAAG  ++ AL+GVG+G+ GI 
Sbjct  159  AAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGIL  218

Query  215  ALSGVVDLNANTPVLALMIGLAVGIDYALFIVSRYRTELESgaapedaaatavgtagsav  274
            A+S++  + + TP+LA+M+GLAVGIDY LF++SR+R+EL SG   +DA + A +TAGS+V
Sbjct  219  AFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSV  278

Query  275  vfagLTVIIALAGLTVVGIPILGQMGlaasatvaiavliavtllpavlGFAGTKVLGGRI  334
            VFAG TVIIAL GLTVVGIP+LG+MG+AA+ +VA+AVL+++TLLPA+L+  G + LG R 
Sbjct  279  VFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE  338

Query  335  PGLRRPARPGPTAGWR--WSSFLARRRvvmllatvaglavlavpaaDMRLGLPNDATAAP  392
             +  R+A  G ++ W   W + + RR V+  +A V+GLAV+A+P  +M+ +L   +   P
Sbjct  339  RASTRSA--GGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDP  396

Query  393  DSTQRKAYDLISESFGPGLNGPLVVVLDAANDPQSATQAAMQRINALDNVAMVMPPQFNR  452
            DSTQR AY  ++++FGPG ++PLVV++ + +D+ SA ++    + +L NVA V P   + 
Sbjct  397  DSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSA  456

Query  453  AHDTALLTVIPSTGPETQETEDLVADIRALSGQLEADTGATMSVTGATAMDIDISQRMAD  512
               TA+LTVI+ +GP    T  LV DIRAL     +D ++++ VTG+TA+ +D  +++  
Sbjct  457  DGSTAMLTVIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTAIALDSDEQLRS  511

Query  513  ALLPYLSLVVGLAFILLMIVFRSVLVPLSATLGFLGSvgatfgavvavfQWGWLGDLLGV  572
            AL++Y++L+VGL+F+LL+++FRS LVPL AT GFL S+GA++G+ VAVFQWGWL+ ++  
Sbjct  512  ALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQA  571

Query  573  DATGPVMSVLPVLLIGVLFGLAMDYQVFLVTRMREEYVHGRSPDEAMITGFKHGSRVVVA  632
                P++S+LP+++ G+LFGLAMDYQVFLV+R++E   HG SP EA+ +GF++++ VVVA
Sbjct  572  PQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVA  631

Query  633  AALIMISVFAGFVLAESVLIQSIGFALAFGVAVDAFVVRMTIVPALMSLLGRSAWWLPRW  692
            AA IM +VF GF L+ S L+ SI++ALA GV  DA++VRM +VPAL++LLGRSAWW+PRW
Sbjct  632  AAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRW  691

Query  693  LDRVLPNVDVEGE  705
            LD++LP +DVEG 
Sbjct  692  LDKLLPTIDVEGA  704

25) Strop_2987 in NC_009380


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  305 bits (1142),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 306/716 (43%), Positives = 491/716 (69%), Gaps = 17/716 (2%)

Query  1    MASFLYRLGKFAFGRRWLVVGLWLAVLSATLVGAAALSGP--TSDAFRIPGTPSQQAIDL  58
            M+++LYRLG ++   RW VV+ WL VL   + ++ ALSG   +S +F +PGT S +A+  
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVL--LIAAGVALSGMRFSSAGFDVPGTDSSRALST  58

Query  59   LRERFPQASADGATARVVFAAPEGQKLTDPEYRTAIERAVTELDQAPQVASVTDPFQSG-  117
            L   FP ++   ++ ++V  ++ G+   D+    ++  A+ +    P V +VTDP++++ 
Sbjct  59   LESEFPTTGEATTSLQLVVQSSGGRVTDDA---PSLTSALEQARVIPGVLAVTDPLDPAR  115

Query  118  -AVNATGTIGFAQATYQVQGAELTEPARDALTAVVETARGEGLTVEVGGDALLANPE-Qg  175
             +++A G+ ++AQ T    + E ++     L AV    R++G++ E+GG    A PE  G
Sbjct  116  PSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILG  175

Query  176  laevigivvaavvlviTFGSMVaaglplltailgiligvgaitaatgFVDLSSTTPTLAL  235
             +E++G +VA +VL++TFGS+VAAG  +L A++G+ +GV +I A +++  ++S TP LA+
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  236  MLGLAVAIDYALFIVSRYRHELALGRELKEAAGRAVGTAGSAIVFAGLTVIIALAALSVV  295
            MLGLAV+IDY LF++SR+R EL  GR +++A GRA +TAGS++VFAG TVIIAL +L+VV
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  296  GIPFLTQMglaaagtvavavlialtllpalfglvgrriaggrvrglPARDPEGDTATPSF  355
            GIPFL +M   AA+      ++    L + +     R A GR    ++R + G   +P  
Sbjct  296  GIPFLGEM-GIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGG---SPRW  351

Query  356  GIRWARTVTRRpvaalliavvalgvvaipaaDLRLGMPDDSTAAPDTTQRKAYDLVVAGF  415
               W  +V RRPV A +  V +L+VVA+P  +++ ++   +   PD+TQR AY  V  +F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  416  GPGFNAPLTVVVEAGTSLADGVVEQVAQSIQGLDDVATVTPPVINPAGDTGLMTVVPNSG  475
            GPG + PL V+V +++  A + VE V+  + +L +VATV+P  +++ G T+++TV+++SG
Sbjct  412  GPGAQDPLVVLVRSDSD-AASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESG  470

Query  476  PSDSGTEELVHAIRDLDGTVSGAAIGVTGLTAINIDVSTTLGDallpylavvvglalvll  535
            P D++T  LV+ IR L++   ++++ VTG TAI +D    L  AL++Y+A++VGL+++LL
Sbjct  471  PLDTATTSLVRDIRALGD--DSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLL  528

Query  536  mlvfrsllvPIKATAGFLLSvaatfgavvavfQWGWAASLFGIEQTGPIISFLPIFLIGI  595
            +L+FRS+LVP+ AT+GFLLS++A++G+ VAVFQWGW  ++    Q  P++S+LPI++ GI
Sbjct  529  VLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGI  588

Query  596  VFGLAMDYEVFLVTRMREEYVHGSDAREAVVSGFGHGARVVTAAAIIMIGVFTGFILSPE  655
            +FGLAMDY+VFLV+R++E   HG+ +REAV +GF ++A VV AAA IM +VF GF LSP 
Sbjct  589  LFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPS  648

Query  656  PIITSVGFALGVAVLFDALVVRMTIVPAVMTLLRDAAWRLPRWLDRALPDVDVEGE  711
            +++ S+++AL+V+VL DAL+VRM +VPA++TLL  +AW++PRWLD+ LP +DVEG 
Sbjct  649  SLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

26) BLASA_2854 in NC_016943


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  304 bits (1138),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 325/679 (48%), Positives = 490/679 (73%), Gaps = 15/679 (2%)

Query  41   TSSSFSIPGQESTTALERIGEEFGARGEGATARVVVAAPDGETLTTPENAGAVSALVAEL  100
            +S++F +PG +S+ AL  +  EF + GE++T+  +V  + G  +T  ++A ++++ + + 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVT--DDAPSLTSALEQA  98

Query  101  GGLPGVVSATNPLDPAAPSVNQQQDTAYSTVTYAAAPGEVTPEQQdallaalddaRDTGF  160
              +PGV++ T+PLDPA PS++ +  TA + VT +    E + E    L A   + RD G 
Sbjct  99   RVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGM  158

Query  161  TVEASGEATQQAPHVGGPTEVIGvvvalvvlavTYGSLAVAGMNlltaivgvgigvlgvt  220
            + E +G  T   P++ GPTE++G +VA++VL +T+GSL  AG N+L A+VGVG+GVLG+ 
Sbjct  159  AAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGIL  218

Query  221  iatgFIDLSSTTPTLAAMLGLAVGIDYALFIVTRYRQELRAGSDvgtaiatavgtagsav  280
              +++  ++S TP LA MLGLAVGIDY LF+++R+R ELR+G  V  AI+ A +TAGS+V
Sbjct  219  AFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSV  278

Query  281  vtagltvvIALAGLFVVGIPFLTQMGvaaaltvviavlvaltlvpavlSYLGHRALPRRQ  340
            V AG TV+IAL GL VVGIPFL +MG+AAA++V +AVL++LTL+PA+LS +G+RAL RR+
Sbjct  279  VFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE  338

Query  341  RDAAKAATVGDGVPTGGRGFLAGWARTVTHQRVLSLLLTIAALGVISIPFFSMQTTLVQT  400
            R ++++A        G+    + W  +V ++ V++ +  +++L+V+++P+++MQT+LV  
Sbjct  339  RASTRSAG-------GSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIP  391

Query  401  PGED--STQARAQELLAEGFGAGFNGPITILF-dgddaagaaaaaSTSITelddvelvpp  457
             GED  STQ  A   +A++FG+G ++P+ +L   + DAA+A  + ST +  L +V  V+P
Sbjct  392  GGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSP  451

Query  458  pvpNADGSAALLTVIPQSGPTDPGTEQLVADLRTQLADLAGVQASVTGQTAVSVDVARSL  517
               +ADGS+A+LTVI++SGP D +T  LV D+R+   D ++VQ  VTG TA+++D    L
Sbjct  452  GPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDDSTSVQ--VTGSTAIALDSDEQL  509

Query  518  DEalpvylalvvglalvllvlvfrsllvplvgvlgfllTIGASLGATVAVFQWGWLADAV  577
              AL  Y+AL+VGL+++LLVL+FRS+LVPL++  GFLL++GA+LG+TVAVFQWGWL   V
Sbjct  510  RSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIV  569

Query  578  NLDTTGPLISLTPILVIGILFGLAMDYQIFLVSRMHEAHSSGANPMDAIRTGFRQAAPVV  637
            +     PL+SL PI+V GILFGLAMDYQ+FLVSR+HEAH  G++P +A+R+GF+Q+APVV
Sbjct  570  QAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVV  629

Query  638  VAAALIMFSVFAGFVPAGEATIKSIAFALATGIVFDAFVVRMVLVPAALALLGDKAWWLP  697
            VAAA IM +VF GF  +  + + SIA+ALA G++ DA++VRM+LVPA L+LLG  AWW+P
Sbjct  630  VAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIP  689

Query  698  RWL-SWLPALDVEGAALEK  715
            RWL   LP++DVEGAA++ 
Sbjct  690  RWLDKLLPTIDVEGAAFDD  708

27) AMIS_55580 in NC_017093


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  301 bits (1127),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 333/717 (47%), Positives = 505/717 (71%), Gaps = 19/717 (2%)

Query  1    MATLLHRLGLASVRHRIvvtvvwllalvavgvgaatlsgttaNTFSIPGQESTKALDLMK  60
            M++LL RLG+ S R R  V   WLL L+  +  A +    ++  F +PG +S++AL  + 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKFGAASAGAT-VQVVFEAPAGETVTSQDNAAQIAKTVASLGQVPGVVSVSNPLDEANPA  119
              F +++ ++T +Q+V ++++G      D+A+ ++ ++     +PGV++V++PLD A P+
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVT---DDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  120  VSRDQVAAYSTVTFDVQPSLVTDEQRESIIDKVEDA----RSFGMTVEAEGEALSNPADI  175
            +S D  +A + VT +     + +EQ + +   ++      R  GM+ E  G   S  ++I
Sbjct  118  ISADGATAIAQVTVGD----IDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEI  173

Query  176  GGASEilgvvvalivlalTYGSLVAAGMNLLTaivgvgigaagivTLTGFVDLQSTTPIL  235
             G++E++G +VA++VL LT+GSLVAAG N+L A+VGVG+G  GI++++++  + S TPIL
Sbjct  174  LGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPIL  233

Query  236  AVMLGLAVGIDYALFIVTRFRHELRRGLPVEESaamavgtagsavvtagltvvIALAGLS  295
            AVMLGLAVGIDY LF+++RFR ELR G  V+++ + A +TAGS+VV AG TV+IAL GL+
Sbjct  234  AVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLT  293

Query  296  VVGIPFLTEMGlaaaativiavlvaitlvpailGFIGLRALPKKQRGVHGDVLPDGRGFI  355
            VVGIPFL EMG+AAA ++ +AVL+++TL+PA+L+ +G RAL +++R+         R   
Sbjct  294  VVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPR-WT  352

Query  356  KGWADLVTRQRTislvlavaalaviaiPFFSMQTTLNQRAAEG--STQAKAQAIIDSRFG  413
              W + V R+  I+    V++LAV+A+P+++MQT+L   ++E+  STQ  A + +   FG
Sbjct  353  TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFG  412

Query  414  PGVSSPLLVLV-DGPDAVQYATTVQKQVASLPDVALATPAQPNQDQSAALITIIPASGPE  472
            PG   PL+VLV  ++DA     TV  +++SLP+VA  +P+  + D S+A++T+I+ SGP 
Sbjct  413  PGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPL  472

Query  473  DQKTVDLVHAIRDTVPDADGAEVYVTGNTAVSIDVSQKLNDALPvylalvvglafvllvl  532
            D  T  LV+ IR    + D++ V VTG+TA+++D  ++L  AL  Y+AL+VGL+F+LLVL
Sbjct  473  DTATTSLVRDIRAL--GDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  533  vfRSIlvpvvgvlgfllTIGAAFGATVAVFQWGWAADAVNAGSTGPILSLAPIIIVGILF  592
            +FRS+LVP+++  GFLL++GAA+G+TVAVFQWGW    V+A    P+LSL PII+ GILF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  593  GLAMDYQVFLVSRMHEAHAHGASPRDAIVTGFRQAAPvvvaaatimfavfaafvPEGNDT  652
            GLAMDYQVFLVSR+HEAH HG+SPR+A+ +GF+Q+APVVVAAA+IM AVF +F    +  
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  653  IKPIAFALAVGIAFDAFIVRMIAVPAALALLGRSAWWLPSWL-RWLPELDVEGAALE  708
            + +IA+ALAVG+  DA++VRMI VPA L+LLGRSAWW+P WL + LP +DVEGAA++
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFD  707

28) Amir_2790 in NC_013093


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  294 bits (1102),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 337/740 (46%), Positives = 509/740 (69%), Gaps = 34/740 (4%)

Query  1    MARLLYRLGVGSHRRRlavvllwlvvllgtgagaltlsgttaNSFSIPGQESTTALDKIS  60
            M+ LLYRLGV S R R AVV  WL+VLL +++ AL+    ++ +F +PG +S+ AL  + 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EEFGSSGGATA--RVVVKAPDGQTLTTPENAQLIAGLVQDLSELDGVASASNPLDPQAPA  118
             EF ++G AT+  ++VV++++G+   T + + L ++L Q    + GV + ++PLDP  P+
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRV--TDDAPSLTSALEQA-RVIPGVLAVTDPLDPARPS  117

Query  119  VNQQQDTAYSTVTYSAKVGDITQEQKDAL---FKAVEDG-RTGGLTVEAAGEATQSPPHI  174
            ++ +  TA + VT    VGDI +EQ D +   + AV  G R  G++ E +G  T + P+I
Sbjct  118  ISADGATAIAQVT----VGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEI  173

Query  175  GGVAEALGVIIALVILAVTYGSLVTAGMNLLTASVGVGIGALGVMIATGFMDLQSTTPIL  234
             G +E +G ++A+++L +T+GSLV+AG N+L A VGVG+G LG++  +++  + S TPIL
Sbjct  174  LGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPIL  233

Query  235  ASMLGLAVGIDYALFIINRYRQELRHGREVGDaigiavgtagsavvtagitvviaLAGLT  294
            A MLGLAVGIDY LF+++R+R ELR GR V DAIG A +TAGS+VV AG TV+IAL GLT
Sbjct  234  AVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLT  293

Query  295  VAGIPFLTQMGVAAAATIVVSVLIAITLVPAVLGFLGLKALPRKQREAVRRGEVGETEEQ  354
            V GIPFL +MG+AAA ++ V+VL+++TL+PA+L+ +G +AL R++R + R +  +     
Sbjct  294  VVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPR---  350

Query  355  HERGFFRGWVNGVTKQRvaalllaviglglvSVPAASMTTTLVPRPVVDS-TQERAE-KI  412
                    W+ +V ++ V A +  V GL++V++P  +M T+LV     D+ + +RA    
Sbjct  351  ----WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTT  406

Query  413  LADGFGAGFNGPLIVLF-EGGNPaqaaaaavaDIQGLDDVAMVAPPIPDADGTAAMLTVI  471
            +AD+FG+G ++PL+VL   ++++A A  +  +++ +L +VA V+P    ADG++AMLTVI
Sbjct  407  VADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVI  466

Query  472  PKSGPASQETEKLVEDLRAQLADVEGSTTYVTGSTAVSVDVAVTLDKAlpvylvlvvgla  531
            + SGP    T  LV D+RA L+D ++++  VTGSTA+++D    L  AL  Y+ L+VGL+
Sbjct  467  AESGPLDTATTSLVRDIRA-LGD-DSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  532  llllvlvfrsilvplvgvlgfllTIGASLGATVAVFEWGWLADAVNLDGTGPLISLTPII  591
            +LLLVL+FRS+LVPL++  GFLL++GA+LG+TVAVF+WGWL   V+     PL+SL PII
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  592  VIGILFGLAMDYQVFLVSRMHEAHAHGIAPRDAIRTGFRQAAPVVVAAALIMFSVFAGFV  651
            V GILFGLAMDYQVFLVSR+HEAH HG +PR+A+R+GF+Q+APVVVAAA IM +VF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  652  PSGDATMKSIAFALAIGIAVDAFVVRMvlvpaalallgkaawwlpSWL-RW----LPELD  706
             S  + + SIA+ALA+G+  DA++VRM      ++ L     + + W+ RW    LP +D
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRM----ILVPALLTLLGRSAWWIPRWLDKLLPTID  700

Query  707  VEGAGLERDGKLEPEKPLAD  726
            VEGA+++ D +  + + LA 
Sbjct  701  VEGAAFDDDRREAAPNELAS  720

29) SGR_4318 in NC_010572


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  292 bits (1095),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 316/725 (44%), Positives = 505/725 (70%), Gaps = 22/725 (3%)

Query  1    MATFLYKLGRLTFRRRRFvaliwvallavagigaatapaatsssfsipGTEAQRAFDLLD  60
            M+++LY+LG L+ R R+ V   W+ +L +A+  A ++   +S++F +PGT++ RA+  L+
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRNPGTSADGATARVVFKAPGDEKVTDPANKSEITGIVKKLQSGS--DQIASVADPFE--  116
               P T+   ++ ++V +++G+ +VTD     +  ++   L+ +     + +V+DP++  
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTD-----DAPSLTSALEQARVIPGVLAVTDPLDPA  114

Query  117  QQAVSQDGSTAYISVSYKVNSMELTDGTRDSLEDVGKDAQQNGMKVEIGGDALQVMPHT-  175
            + ++S DG+TA   V+      E +D     L+ V+ + +++GM  EIGG     +P+  
Sbjct  115  RPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEIL  174

Query  176  GTaeiigvviaaivlviTFGSLVAAGLPLVTALVGVGIGVSTITALANVLDLGSTTSILA  235
            G +E++G ++A +VL++TFGSLVAAG  ++ ALVGVG+GV  I A++ +  +GS T+ILA
Sbjct  175  GPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILA  234

Query  236  MMIGLAVGIDYALFIVSRYraelaegreheeaagravgTAGSAVVFAGLTVVIALVGLAV  295
            +M+GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+V
Sbjct  235  VMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTV  294

Query  296  VNIPMLTKMGFAAAGTVAIAVLIALTLVPAALGFAGKRVMGrkarkaaeaekrpeakpNM  355
            V IP L  MG+AAA +VA+AVL++LTL+PA L+  G+R +GR+ R ++ +   +      
Sbjct  295  VGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP---RW  351

Query  356  GTRWARFVLRKPVWvmlvgvlglgIIAVPAASLEMGLPDDGAQPKSTTQRQAYDMLSDGF  415
             T W   VLR+PV   +  V GL+++A+P  +++ +L   G++   +TQR AY  ++D+F
Sbjct  352  TTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  416  GPGFNGPLLAVVDTKNSSDGKAAADRVAEEIESI-GVSAVIPPVFNKAGDTATITVIPKD  474
            GPG ++PL+ +V  ++ SD+ +A + V+ E+ S+  V++V P   +  G TA +TVI+  
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  475  RPSSHATEEVVHDIRDAGRDIKADTGAEVLVTGATAMNIDFSQKMNDALLPYlalvvgla  534
             P   AT  +V+DIR  G     D ++ V VTG+TA+ +D  +++  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  535  flllmlvfRSILVPLKaalgfllsvvaalgavvavfQWGWLGSLFGVEQTGPIMSMMPIF  594
            FLLL+L+FRS+LVPL A+ GFLLS+ AALG+ VAVFQWGWL+++    Q  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  595  MVGVVFGLAMDYEVFLVTRMREAYVHGESPGQAVVTGFQHGarvvtaaavimmavFSGFI  654
            + G++FGLAMDY+VFLV+R++EA  HG SP +AV +GFQ++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  655  GSSEQMIKMIGFSLAIAVFFDAFVVRMAIVPAVLALLGKRAWWLPRWLDRALPNVDVEGE  714
             S+  ++  I+++LA++V+ DA++VRM +VPA+L+LLG+ AWW+PRWLD+ LP +DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  715  KLQKQ  719
             ++ +
Sbjct  705  AFDDD  709

30) Strvi_1118 in NC_015957


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  291 bits (1088),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 295/702 (43%), Positives = 466/702 (67%), Gaps = 26/702 (3%)

Query  41   ANDSFSIPGTEAQKAFDLLEQRFPGGNADGATARVVFRAPSGEKMTDPDNKAVVTKTVAD  100
            ++ +F +PGT++ +A+  LE  FP      ++ ++V ++ SG ++TD  + + +T ++ +
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQS-SGGRVTD--DAPSLTSALEQ  97

Query  101  LKASSPQVASVADPYQA--RAVSKDGSTAYILTSYKVNSMELKDPAKDGLKEAGEKAEKS  158
             +   P V +V+DP ++   ++S DG+TA    +      E  D     L   +      
Sbjct  98   ARVI-PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQ  156

Query  159  GLKVQIGGDALQEMPET-GSTEIIGIAISAVVLAITFGSLVAAGLPLLTALIGVgigias  217
            G+  +IGG     +PE  G+TE++G  ++ +VL +TFGSLVAAG  +L AL+GVG+G+ +
Sbjct  157  GMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLG  216

Query  218  italattlglstttstlaMMIGLAVGIDYALFIVSRYRAELAEGRDREEAAGRAVGTAGS  277
            I A+++   +++ T+ LA+M+GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS
Sbjct  217  ILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGS  276

Query  278  AVVFAGLTVVIALVGLAVVNIPMLTKMGFAAAGTvviavliaislipavlGFAGKRVFGR  337
            +VVFAG TV+IALVGL+VV IP L  MG+AAA +V +AVL++++L+PA+L+  G+R +GR
Sbjct  277  SVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR  336

Query  338  KarrrleerlaaGPDASAEEKPNMGTRWARFVLRRplmvllvavlglgaaavpavSLELG  397
            + R         ++  SA   P   T W   VLRRP++  +  V GL+  A+P ++++ +
Sbjct  337  RER---------ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTS  387

Query  398  LPDDGSQPVSSQKRQAYDAISDGFGPGYNGPLMVVVdakgsddakgaaEQVRKTITRLDG  457
            L   G++   S +R AY +++D+FGPG ++PL+V+V + +   +    E V   +  L  
Sbjct  388  LVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAV--ETVSTELGSLPN  445

Query  458  VAGVSPATFNKAGDTATLTVISKYKPSSIDTENLVGDIRDEASGFKADTGAEVLVTGQTG  517
            VA VSP+  +  G TA LTVI+   P    T +LV DIR       +D ++ V VTG T+
Sbjct  446  VATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRA-----LGDDSTSVQVTGSTA  500

Query  518  MNIDISQKLNDALVPYlvlvvglaflllmvvFRSVLVPLKaalgfllsvvaalgavvavf  577
            + +D  ++L  AL++Y+ L+VGL+FLLL+++FRS LVPL A+ GFLLS+ AALG+ VAVF
Sbjct  501  IALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVF  560

Query  578  QWGWLADLFGVEETGPIMSMMPIFMIGVVFGLAMDYEVFLVTRMREAYVHGERPGQAVVT  637
            QWGWL  +    +  P++S++PI++ G++FGLAMDY+VFLV+R++EA  HG  P +AV +
Sbjct  561  QWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRA  620

Query  638  GFRHGARVVTAAAVIMISVFAGFIGSSESMIKMIGFGLATAVLFDAFVVRMAIVPAVLAL  697
            GF+++A VV AAA IM +VF GF  S+ S++  I+++LA +VL DA++VRM +VPA+L+L
Sbjct  621  GFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTL  680

Query  698  LGKAAWWLPRWLDRALPNVDVEGEGL---RKQLEAPPVAQQR  736
            LG++AWW+PRWLD+ LP +DVEG ++   R++  +  +A  R
Sbjct  681  LGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELASTR  722

31) O5Y_16935 in NC_022115


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  286 bits (1071),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 308/733 (43%), Positives = 494/733 (68%), Gaps = 46/733 (6%)

Query  4    MSIFLYKLSRLAFRRRWAMvgfwvvllvaggvgaatlsgPTVNTLSIPGTESQAAQDLLA  63
            MS +LY+L+ L+ R RWA+V+ W+++L+ ++  A +    +   + +PGT+S  A   L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  64   ERFPESSTGGASARIVFESPAGTTLADPAIRQSVSELVSALGKD---PEVAAVSDPYASG  120
              FP ++ + +S ++V +S++G       + +  + L SAL +    P V AV+DP  ++
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGR------VTDDAPSLTSALEQARVIPGVLAVTDPLDPA  114

Query  121  --GVSPTGTIGYMQVSYTADSMDLPDSSKELLESAVHDASDSGLAVDVAGNVLMESSAES  178
              ++S+ G+ +  QV+      + +D     L++   +  D G+A +++G+ L  + +E 
Sbjct  115  RPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGS-LTSAVPEI  173

Query  179  MG--EvigvaiaavvltvtFGSLVaaglplisaligigiaictitiatgfiELGSSTTVL  236
            +G  E++G  +A +VL +TFGSLVAAG  +++AL+G+G+++  I   +++  +GS T +L
Sbjct  174  LGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPIL  233

Query  237  AMMLGLAVAIDYSLFIVSRYRSELRDGHDPEIaagraagtagsaVVFAGLTVLIALAGLF  296
            A+MLGLAV+IDY LF++SR+R+ELR G+  + A GRA++TAGS+VVFAG TV+IAL GL 
Sbjct  234  AVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLT  293

Query  297  VVNIPFLTSMGLaaafavavavvISLTLLPATLGFAgsrvlsrsdrrllasggELTHR--  354
            VV IPFL  MG+AAAFAVAVAV++SLTLLPA L+                +   L +R  
Sbjct  294  VVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSW--------------MGRRALGRRER  339

Query  355  --KQSEGAGSRWAKF----VIRRRVPvllasvlglgllaIPTFGINLSLASPPV--PDTT  406
               +S G+++RW+      V+RR V   +A V GL+++A+P +G++ SL  P    PD+T
Sbjct  340  ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDST  399

Query  407  AARATDRLSEGFGAGFSGPLMvvvdvadaadpaaaLSGAQEKLGALPDVAAVTPPALNQA  466
               A   ++++FG+G  +PL+V+V     A +A  +      LG+LP+VA+V+P +++  
Sbjct  400  QRAAYTTVADAFGPGAQDPLVVLVRSDSDAASA--VETVSTELGSLPNVATVSPGPVSAD  457

Query  467  GDTAVITVVPSSGPETEATKALVADIREVAGSLTDETGATMSVTGQTALTIDVSDRLADA  526
            G TA++TV++ SGP   AT +LV DIR ++     + ++++ VTG TA+++D  ++L  A
Sbjct  458  GSTAMLTVIAESGPLDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSA  512

Query  527  LVPYLALVVGLAFILLMLVFRSILVPLKATLGFLLSIGATFGVLVAIFQWGWFAGILGIE  586
            L++Y+AL+VGL+F+LL+L+FRS+LVPL AT GFLLS+GA++G  VA+FQWGW+  I+   
Sbjct  513  LIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQ-A  571

Query  587  GQTGSVVAMLPIFMIGIVFGLAMDYQVFLVTRMREAFVHGDGPDEAVVKGFDQGARVVTA  646
             Q  +++++LPI++ GI+FGLAMDYQVFLV+R++EA  HG +P EAV  GF+Q+A VV A
Sbjct  572  PQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVA  631

Query  647  AALIMiavfagfifggdafiMQIGLGLSFAVLFDAFVIRMTVVPAVMSLLGSKAWWFPSW  706
            AA IM AVF GF ++  +++  I+L+L+ +VL DA+++RM +VPA+++LLG  AWW+P W
Sbjct  632  AAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRW  691

Query  707  LDRLVPNVDVEGE  719
            LD+L+P +DVEG 
Sbjct  692  LDKLLPTIDVEGA  704

32) RER_36820 in NC_012490


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  286 bits (1072),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 307/733 (42%), Positives = 494/733 (68%), Gaps = 46/733 (6%)

Query  1    MSIFLYKLSRLAFRRRWAMvgfwvvllvaggvgaatlsgPTVNTLSIPGTESQAAQDLLA  60
            MS +LY+L+ L+ R RWA+V+ W+++L+ ++  A +    +   + +PGT+S  A   L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   ERFPESSTGGASARIVFESPAGTTLADPAIRQSVSELVSALGKD---PEVAAVSDPYASG  117
              FP ++ + +S ++V +S++G       + +  + L SAL +    P V AV+DP  ++
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGR------VTDDAPSLTSALEQARVIPGVLAVTDPLDPA  114

Query  118  --GVSPTGTIGYMQVSYTADSMDLPDSSKELLESAVHDASDSGLAVDVAGNVLMESSAES  175
              ++S+ G+ +  QV+      + +D     L++   +  D G+A +++G+ L  + +E 
Sbjct  115  RPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGS-LTSAVPEI  173

Query  176  MG--EvigvaiaavvltvtFGSLVaaglplisaligigiaictitiatgfiELGSSTTVL  233
            +G  E++G  +A +VL +TFGSLVAAG  +++AL+G+G+++  I   +++  +GS T +L
Sbjct  174  LGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPIL  233

Query  234  AMMLGLAVAIDYSLFIVSRYRSELRDGHDPEIaagraagtagsaVVFAGLTVLIALAGLF  293
            A+MLGLAV+IDY LF++SR+R+ELR G+  + A GRA++TAGS+VVFAG TV+IAL GL 
Sbjct  234  AVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLT  293

Query  294  VVNIPFLTSMGLaaafavavavvISLTLLPATLGFAgsrvlsrsdrrllasggELTHR--  351
            VV IPFL  MG+AAAFAVAVAV++SLTLLPA L+                +   L +R  
Sbjct  294  VVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSW--------------MGRRALGRRER  339

Query  352  --KQSEGAGSRWAKF----VIRRRVPvllasvlglgllaIPTFGINLSLASPPV--PDTT  403
               +S G+++RW+      V+RR V   +A V GL+++A+P +G++ SL  P    PD+T
Sbjct  340  ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDST  399

Query  404  AARATDRLSEGFGAGFSGPLMvvvdvadatdpaaaLSGAQEKLGALPDVAAVTPPALNQA  463
               A   ++++FG+G  +PL+V+V     + +A  +      LG+LP+VA+V+P +++  
Sbjct  400  QRAAYTTVADAFGPGAQDPLVVLVRSDSDAASA--VETVSTELGSLPNVATVSPGPVSAD  457

Query  464  GDTAVITVVPSSGPETEATKALVADIREVAGSLTDETGATMSVTGQTALTIDVSDRLADA  523
            G TA++TV++ SGP   AT +LV DIR ++     + ++++ VTG TA+++D  ++L  A
Sbjct  458  GSTAMLTVIAESGPLDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSA  512

Query  524  LVPYLALVVGLAFILLMLVFRSILVPLKATLGFLLSIGATFGVLVAIFQWGWFAGILGIE  583
            L++Y+AL+VGL+F+LL+L+FRS+LVPL AT GFLLS+GA++G  VA+FQWGW+  I+   
Sbjct  513  LIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQ-A  571

Query  584  GQTGSIVAMLPIFMIGIVFGLAMDYQVFLVTRMREAFVHGDGPDEAVVKGFDQGARVVTA  643
             Q  +++++LPI++ GI+FGLAMDYQVFLV+R++EA  HG +P EAV  GF+Q+A VV A
Sbjct  572  PQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVA  631

Query  644  AALIMiavfagfifggdafiMQIGLGLSFAVLFDAFVIRMTVVPAVMSLLGSKAWWFPSW  703
            AA IM AVF GF ++  +++  I+L+L+ +VL DA+++RM +VPA+++LLG  AWW+P W
Sbjct  632  AAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRW  691

Query  704  LDRLVPNVDVEGE  716
            LD+L+P +DVEG 
Sbjct  692  LDKLLPTIDVEGA  704

33) F750_3010 in NC_021055


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  285 bits (1065),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 313/730 (43%), Positives = 512/730 (71%), Gaps = 17/730 (2%)

Query  1    MATFLYKLGRLAFRRRRYvaliwvallalagfgaasastatsssfsIPGTEAQRAFDLLD  60
            M+++LY+LG L+ R R+ V   W+ +L +A+  A S+   +S++F +PGT++ RA+  L+
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   ERFPGGSADGATARVVFKAPGDEKVTSAANKAEIKGIVGDLKSGSDQIASVADPFAAE--  118
              FP  +   ++ ++V +++G+ +VT   + + + + + + +  ++ + +V+DP+ +   
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTD--DAPSLTSALEQARVIPG-VLAVTDPLDPARP  116

Query  119  AVSEDGSTAYISVSYKVSSMELTDGTREALEDAGHDAQSSGMQVEIGGDALQVMPEtgat  178
            ++S DG+TA   V+      E +D     L+  + + +  GM  EIGG     +PE  + 
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  ei-igvaiaavvlvitFGSLIAAGLPLLTALIGVGIGVSTITALANVLDLGSTTSTLAMM  237
               +G  +A +VL++TFGSL+AAG  +L AL+GVG+GV  I A++ +  +GS T+ LA+M
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  238  IGLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAVVN  297
            +GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+VV 
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  298  IPMLSKMGFAAAGTVAIAVLIALTLVPAMLGFAGKRIMGrrarkaaeaenrpeakpnMGT  357
            IP L+ MG+AAA +VA+AVL++LTL+PA+L+  G+R +GRR R ++ +   +       T
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWT---T  353

Query  358  RWArfvlrrpvwvllvgvlglgAIAVPAASLEMGLPDDGAQPKSTTQRQAYDMLSDGFGP  417
             W   VLRRPV   +  V GL+ +A+P  +++ +L   G++   +TQR AY  ++D+FGP
Sbjct  354  TWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGP  413

Query  418  GFNGPLLVVVDTKGASDGKSAVDRVSQEIEGIGHVAAVTPAAFNKAGDAATITVVPQDRP  477
            G ++PL+V+V  ++ SD+ SAV+ VS E+ ++ +VA+V+P++ +  G +A +TV+++  P
Sbjct  414  GAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGP  471

Query  478  SSTETEDVVHAIRDAGPQIKDDTGAEVLVTGATAMNIDFSEKMNNALLPYlalvvglafl  537
              T T  +V+ IR  G     D ++ V VTG+TA+ +D  E++ +AL++Y+AL+VGL+FL
Sbjct  472  LDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFL  526

Query  538  llmvvfRSVLVPLKaalgfllsvvaalgavvavfQWGWLGSLFGVEQTGPIMSMMPIFMV  597
            LL+++FRS LVPL A+ GFLLS+ AALG+ VAVFQWGWL+++    Q  P++S++PI++ 
Sbjct  527  LLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVT  586

Query  598  GVVFGLAMDYEVFLVTRMREAYVHGETPGQAIVTGFKHGarvvtaaavimmavfaGFIGS  657
            G++FGLAMDY+VFLV+R++EA  HG +P +A+ +GF+++A VV AAA IM AVF GF  S
Sbjct  587  GILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALS  646

Query  658  SEQMIKMIGFSLAIAVFFDAFVVRMAVVPAVLALLGRRAWWLPRWLDRVLPNVDVEGEGL  717
            +  ++  I+++LA++V+ DA++VRM +VPA+L+LLGR AWW+PRWLD++LP +DVEG ++
Sbjct  647  PSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAF  706

Query  718  REDLSDGPAE  727
             +D  +++++
Sbjct  707  DDDRREAAPN  716

34) Sfla_3723 in NC_016114


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  285 bits (1066),  Expect = 9e-78, Method: Compositional matrix adjust.
 Identities = 313/730 (43%), Positives = 512/730 (71%), Gaps = 17/730 (2%)

Query  1    MATFLYKLGRLAFRRRRYvaliwvallalagfgaasastatsssfsIPGTEAQRAFDLLD  60
            M+++LY+LG L+ R R+ V   W+ +L +A+  A S+   +S++F +PGT++ RA+  L+
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   ERFPGGSADGATARVVFKAPGDEKVTSTANKAEIKGIVGDLKSGSDQIASVADPFAAE--  118
              FP  +   ++ ++V +++G+ +VT   + + + + + + +  ++ + +V+DP+ +   
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTD--DAPSLTSALEQARVIPG-VLAVTDPLDPARP  116

Query  119  AVSEDGSTAYISVSYKVSSMELTDGTREALEDAGHDAQSSGMQVEIGGDALQVMPEtgat  178
            ++S DG+TA   V+      E +D     L+  + + +  GM  EIGG     +PE  + 
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  ei-igvaiaavvlvitFGSLIAAGLPLLTALIGVGIGVSTITALANVLDLGSTTSTLAMM  237
               +G  +A +VL++TFGSL+AAG  +L AL+GVG+GV  I A++ +  +GS T+ LA+M
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  238  IGLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAVVN  297
            +GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+VV 
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  298  IPMLSKMGFAAAGTVAIAVLIALTLVPAMLGFAGKRIMGrrarkaaeaenrpeakpnMGT  357
            IP L+ MG+AAA +VA+AVL++LTL+PA+L+  G+R +GRR R ++ +   +       T
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWT---T  353

Query  358  RWArfvlrrpvwvllvgvlglgAIAVPAASLEMGLPDDGAQPKSTTQRQAYDMLSDGFGP  417
             W   VLRRPV   +  V GL+ +A+P  +++ +L   G++   +TQR AY  ++D+FGP
Sbjct  354  TWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGP  413

Query  418  GFNGPLLVVVDTKGASDGKSAVDRVSQEIEGIGHVAAVTPAAFNKAGDAATITVVPQDRP  477
            G ++PL+V+V  ++ SD+ SAV+ VS E+ ++ +VA+V+P++ +  G +A +TV+++  P
Sbjct  414  GAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGP  471

Query  478  SSTETEDVVHAIRDAGPQIKDDTGAEVLVTGATAMNIDFSEKMNNALLPYlalvvglafl  537
              T T  +V+ IR  G     D ++ V VTG+TA+ +D  E++ +AL++Y+AL+VGL+FL
Sbjct  472  LDTATTSLVRDIRALG-----DDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFL  526

Query  538  llmvvfRSVLVPLKaalgfllsvvaalgavvavfQWGWLGSLFGVEQTGPIMSMMPIFMV  597
            LL+++FRS LVPL A+ GFLLS+ AALG+ VAVFQWGWL+++    Q  P++S++PI++ 
Sbjct  527  LLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVT  586

Query  598  GVVFGLAMDYEVFLVTRMREAYVHGETPGQAIVTGFKHGarvvtaaavimmavfaGFIGS  657
            G++FGLAMDY+VFLV+R++EA  HG +P +A+ +GF+++A VV AAA IM AVF GF  S
Sbjct  587  GILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALS  646

Query  658  SEQMIKMIGFSLAIAVFFDAFVVRMAVVPAVLALLGRRAWWLPRWLDRVLPNVDVEGEGL  717
            +  ++  I+++LA++V+ DA++VRM +VPA+L+LLGR AWW+PRWLD++LP +DVEG ++
Sbjct  647  PSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAF  706

Query  718  REDLSDGPAE  727
             +D  +++++
Sbjct  707  DDDRREAAPN  716

35) ACPL_670 in NC_017803


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  279 bits (1045),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 303/715 (43%), Positives = 480/715 (68%), Gaps = 25/715 (3%)

Query  1    MSSALHRLAAAVVRHRGRTLAGWLITLVLLAGGGLLISRGTDDAFTIPGSESQQALDTLK  60
            MS+ L RL+    R R   +A+WL+ L++ AG +L   R +  +F +PG++S +AL TL 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   RVFPEVSGSSA--QIVI--TGVDPATIKPEITAAVRRAERLDQVVAVISPFDERFRGNRT  116
              FP  + +++  Q+V+  +G   +   P +T+A+ +A  +  V+AV  P+D   R + +
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPA-RPSIS  119

Query  117  ARAAIVTVQFDVAFMDVKPSTK--AAVDAIGASIPHASVVVG-GDAYADRVPKP-SPVEg  172
            A +A    Q  V+ +D   +    + +DA++A++ + ++    G++ +  VP   +P E 
Sbjct  120  ADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTEL  179

Query  173  lglavalmvllITFGSLVAAGLPLLTAIlgvglsvgllygvTRVVTVPSTAVTLAMMLGL  232
            +G  VA++VLL+TFGSLVAAG  +L A++GVG++V  + + + +  + S +  LA+MLGL
Sbjct  180  VGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGL  239

Query  233  AVGIDYALFILSRHRDQLRDGLSVAESIARAVATAGSAVVFagltvvialvglvvagiPF  292
            AVGIDY LF+LSR R +LR G  V ++I+RA ATAGS+VVFAG TV+IALVGL V GIPF
Sbjct  240  AVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPF  299

Query  293  LTTMGLCaalavaiavliaiTLMPALLALAGDRI-----RPAAKPRQRQGRIFERWVGAV  347
            L  MG+ AA+AVA+AVL+++TL+PALL+  G R      R+++++     R    W+GAV
Sbjct  300  LGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAV  359

Query  348  TRHPVITI--VVllaglgaltlpagelRLALPDGASEAPGSVARRTYDVISAEFGPGYNG  405
             R+PVI+   VV   ++ AL L + +  L +P+G  E P+S  R +Y  ++  FGPG ++
Sbjct  360  LRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGG--EDPDSTQRAAYTTVADAFGPGAQD  417

Query  406  PLLVTADIIASHDPVGLMTKLGAEISRVPGVALVPIATPNPSAEIGIVQVVPASAPDSPE  465
            PL+V   + +  D+ + +  +++E++ +P VA V+ +  ++ +  +++ V++ S+P    
Sbjct  418  PLVVL--VRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  466  TVALVARLRALEPHFRQEYGVGTAVTGITAVGVDVSARLGGALVPFGIlvvglsllllTM  525
            T +LV  +RAL  +     + +  VTG TA+++D   +L +AL+++  L+VGLS+LLL +
Sbjct  476  TTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVL  530

Query  526  VFRSVAVPVKATAGYLLSVGSAFGVTALVFQRGWLANQLNVAHTGSVISFLPIILMGVLF  585
            +FRS  VP+ AT+G+LLS+G+A+G T  VFQ+GWL   ++ ++  +++S+LPII+ G+LF
Sbjct  531  LFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILF  590

Query  586  GLAMDYEVFLVSRIREEYVHTGDARHAIDAGfrasapvvvaaaaimfavfaafvPEGAAT  645
            GLAMDY+VFLVSRI+E   H   +R+A+ AGF+ SAPVVVAAAAIM AVF +F    ++ 
Sbjct  591  GLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSL  650

Query  646  VKPIALSLAVGVFVDAFLVRMTLVPAVLALLGDRAWWLPARLDRALPSFDVEGAG  700
            V +IAL+LAVGV+ DA+LVRM LVPA+L+LLG  AWW+P +LD+ LP++DVEGA+
Sbjct  651  VGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAA  705

36) CMN_01044 in NC_020891


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  279 bits (1044),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 296/729 (41%), Positives = 482/729 (67%), Gaps = 21/729 (2%)

Query  1    MATLLYRLGRISFLHPWRvvaawilvlgillggglalggKTQESFSIPGTESQEAIDRLA  60
            M++LLYRLG +S    W VVA+W+LVL I  G +L+    +  +F +PGT+S  A+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   AVFPQAAGASA--QIVTEAPAGAKVTDDaekaaieatataaGEVPGVATALSPFSEYATD  118
            + FP ++ A++  Q+V ++ +G++VTDDA   +     +    +PGV +   P+   A  
Sbjct  61   SEFPTTGEATTSLQLVVQS-SGGRVTDDAPSLTSALEQARV--IPGVLAVTDPLDP-ARP  116

Query  119  AVSDDGTVAITTVQFSGQSDQVTTATLDALRESAQAAEDAGLTVSFGGQVFQDVHYGVTV  178
            ++S DG+ AI+ V  ++  ++ +      L   A +  D G++  +GG +   V   +  
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  TEafgvlfaglvlvltfgSMLAAGLPLIgalvgvaasagalvaasKFVTVSSASPLLAVM  238
            TE  G L A LVL+LTFGS++AAG  ++GALVGV+ +  +++A S +  ++S +P+LAVM
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  239  IGLAVGIDYALFILMRHRTQLANGMPVERsaatavatagsavIFAGVTVIIALLGLLVVQ  298
            +GLAVGIDY LF+L R R++L +G  V+ + + A ATAGS+V+FAG TVIIAL+GL VV 
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  299  IPFLTVMGLGAAFAVLLAMGVATTLLPAMLGLAGER-LRPKEGSRAARRAKAQAEGTQHT  357
            IPFL  MG++AAFAV +A+ ++ TLLPA+L+  G R L  +E      RA +++ G    
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE------RASTRSAGGSPR  350

Query  358  LGARWvkvvtkvpiipvvivigiagllavPASQLQLGLPSGATQPAGSTSRVAYDTVSDA  417
              + W+  V + P+I+   V+G  +++A+P   +Q +L   + + ++ST R AY TV+DA
Sbjct  351  WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADA  410

Query  418  FGPGHNGPLVVLVDITQTTDPIGVLGEIGDEIRGLDDVAFVGAGTPNPSVDTAIIQVVPD  477
            FGPG ++PLVVLV     +D+ + +  ++ E+ +L +VA V++G  ++   TA++ V+++
Sbjct  411  FGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAE  468

Query  478  SPPESAETTALMQSIRDLAPGLHDRYDTRVSVTGTTAVQNDISQRLDQALVPFGIVVVGL  537
            S P  + TT+L++ IR L+ +      T V VTG+TA+  D  ++L  AL+++  ++VGL
Sbjct  469  SGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGL  523

Query  538  SIILLMIVFRSIFVPIKAAVGFLLSVVVSFGTVVLIFQQGQFADALGVTPG-PILSFMPI  596
            S++LL+++FRS++VP+ A+ GFLLS+  ++G+ V +FQ G +   +    G P+LS++PI
Sbjct  524  SFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPI  583

Query  597  LLMAILFGLAMDYEVFLVSGMREDFVHHGDAKRAIVTGFSGAARVVTAAALIMFFVFAAF  656
            ++ +ILFGLAMDY+VFLVS ++E   H   ++ A+ +GF  +A VV AAA IM  VF +F
Sbjct  584  IVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGF  643

Query  657  VPEGAGVIKTIALGLAVGIFFDAFLVRMTLVPAAMALLGKRAWWIPRWLDRILPDVDIEG  716
                ++++ +IAL+LAVG++ DA+LVRM LVPA ++LLG+ AWWIPRWLD++LP +D+EG
Sbjct  644  ALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEG  703

Query  717  EGLREHQDD  725
             ++ +++ +
Sbjct  704  AAFDDDRRE  712

37) XNR_2104 in NC_020990


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  278 bits (1041),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 301/684 (45%), Positives = 472/684 (70%), Gaps = 30/684 (4%)

Query  48   PGTEAQRAFDLLEERYPGQSADGASARVVFKAPEGEKITAPENAAEVSGIVKELQDGS--  105
            PGT++ RA+  LE  +P  +   +S ++V +++ G ++T      + +++   L+++   
Sbjct  48   PGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGG-RVTD-----DAPSLTSALEQARVI  101

Query  106  DQIASVADPFDKKAPAVSQDGTTAYISVTYDVSSFELTEETRDSLKNAGNDAREGGMTVE  165
              + +V+DP+D   P++S DG+TA   VT +    E ++E    L   + + R+ GM+ E
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  166  IGGDALMVMPEtgitev-igvvvagivlvitFGSLVAAGLPLITALIGVGIGVSAITALA  224
            IGG     +PE       +G +VA +VL++TFGSLVAAG  ++ AL+GVG+GV +I A++
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  225  SVMDLGSTTATLAMMIGLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFA  284
            ++  +GS T+ LA+M+GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFA
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  285  GLTVVIALAGLTVVNIPILTKMglaaagtvvlavlvaitliPAFLGFAGERIVSrkdrka  344
            G TV+IAL GLTVV IP+L  MG+AAA +V +AVL+++TL+PA+L+  G R ++R++R +
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS  341

Query  345  rkaaaeqaaaTGEVLVGDAPRDNGGTRWSRFVQRRPVMVLLAGVIGLGVIAIPAASLEMG  404
             ++A            G++PR    T W   V RRPV+  +A V GL+V+A+P  +++ +
Sbjct  342  TRSA------------GGSPRWT--TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTS  387

Query  405  LPDDGAQPTSTSPRKAYDLLSDGFGPGFNGPLVGVVDLKNSDDQDAVLQRITGEIQKNDH  464
            L   G++   ++ R AY  ++D+FGPG ++PLV +V  ++  D  + ++ ++ E+    +
Sbjct  388  LVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPN  445

Query  465  VAIVTPPAPNDAGDTATFQVIPKDRPNSTETETLVHDIRDLGDTLKSEDGAEVYVTGATA  524
            VA V+P + +  G TA + VI+   P  T T +LV+DIR LGD     D++ V VTG+TA
Sbjct  446  VATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGD-----DSTSVQVTGSTA  500

Query  525  MNIDFSEKMNDALLPYlalvvglaflllmvvfRSILVPLKaalgfllsvvaalgavvavf  584
            + +D  E++  AL++Y+AL+VGL+FLLL+++FRS+LVPL A+ GFLLS+ AALG+ VAVF
Sbjct  501  IALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVF  560

Query  585  QWGWLGGLFGVEQPGPIMSVMPILMVGVVFGLAMDYEVFLVTRMREAYVHGESPSEAITT  644
            QWGWL+ +    Q  P++S++PI++ G++FGLAMDY+VFLV+R++EA  HG SP EA+ +
Sbjct  561  QWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRA  620

Query  645  GFRHGarvvtaaavimiavfaGFIGSSEQMIKMIGFGLAIAVFFDAFVVRMAIVPAVLAL  704
            GF+++A VV AAA IM AVF GF  S+  ++  I+++LA++V+ DA++VRM +VPA+L+L
Sbjct  621  GFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTL  680

Query  705  LGKRAWWLPRWLDRALPDFDVEGD  728
            LG+ AWW+PRWLD+ LP +DVEG 
Sbjct  681  LGRSAWWIPRWLDKLLPTIDVEGA  704

38) CMM_1079 in NC_009480


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  276 bits (1031),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 299/730 (41%), Positives = 482/730 (67%), Gaps = 23/730 (3%)

Query  1    MATLLYRLGRISFLHPWRvvaawilvlgillggglalggKTQESFSIPGTESQEAIDRLA  60
            M++LLYRLG +S    W VVA+W+LVL I  G +L+    +  +F +PGT+S  A+  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   AVFPQAAGASA--QIVTEAPAGEKVTDDGPKaaieatat-aaGEVQGVATALSPFSEYAT  117
            + FP ++ A++  Q+V ++++G +VTDD+P  +     +     V +V+ +L P    A 
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTDDAPSLTSALEQARVIPGVLAVTDPLDP----AR  115

Query  118  DAVSDDGTVAITTVQFSGQSDQVTTATLDALKESAQAAEDAGLTVSFGGQVFQDVHYGVT  177
             ++S DG+ AI+ V  ++  ++ +      L   A +  D G++  +GG +   V   + 
Sbjct  116  PSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILG  175

Query  178  VTEafgvlfaglvlvltfgSMLAAGLPLIGalvgvaasagalmaasRFVTVSSASPLLAV  237
             TE  G L A LVL+LTFGS++AAG  ++GALVGV+ +  +++A S +  ++S +P+LAV
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  238  MIGLAVGIDYALFILMRHRTQLANGMPVERsaatavatagsavIFAGVTVIIALLGLLVV  297
            M+GLAVGIDY LF+L R R++L +G  V+ + + A ATAGS+V+FAG TVIIAL+GL VV
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  298  QIPFLTVMGLGAAFAVLLAMGVATTLLPAMLGFAGER-LRPKEGSRAARRAKAQAEGTQR  356
             IPFL  MG++AAFAV +A+ ++ TLLPA+L+  G R L  +E      RA +++ G   
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE------RASTRSAGGSP  349

Query  357  TLGARWvkivtkvpiipvvivvgiagllavPASQLQLGLPSGATEPAGSTSRVAYDTVSD  416
               + W+  V + P+I+   VVG  +++A+P   +Q +L   + E ++ST R AY TV+D
Sbjct  350  RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVAD  409

Query  417  AFGPGHNGPLVVLVDITQTTDPIGVLGKIGDEIRGLDDVAFVGTGTPNPSVDTAIIQVVP  476
            AFGPG ++PLVVLV     +D+ + +  ++ E+ +L +VA V+ G  ++   TA++ V++
Sbjct  410  AFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIA  467

Query  477  DSPPESAETTALMQSIRDLAPGLHDRYDTRVSVTGTTAVQNDISQRLDQALVPFGivvvg  536
            +S P  + TT+L++ IR L+ +      T V VTG+TA+  D  ++L  AL+++  ++VG
Sbjct  468  ESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVG  522

Query  537  lsilllmivFRSIFVPVKAAIGFLLSVVVSFGTVVLIFQQGLFADALGVTPG-PILSFMP  595
            LS+LLL+++FRS++VP+ A+ GFLLS+  ++G+ V +FQ G +   +    G P+LS++P
Sbjct  523  LSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLP  582

Query  596  ILLMAILFGLAMDYEVFLVSGMREDFVHHGDAKRAIVTGFSGAARVVTAAALIMFFVFAA  655
            I++ +ILFGLAMDY+VFLVS ++E   H   ++ A+ +GF  +A VV AAA IM  VF +
Sbjct  583  IIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFG  642

Query  656  FVPEGAGVIKTIALGLAVGIFFDAFLVRMTLVPAAMALLGKRAWWIPRWLDRILPDVDIE  715
            F    ++++ +IAL+LAVG++ DA+LVRM LVPA ++LLG+ AWWIPRWLD++LP +D+E
Sbjct  643  FALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVE  702

Query  716  GEGLREHQDD  725
            G ++ +++ +
Sbjct  703  GAAFDDDRRE  712

39) RSal33209_0276 in NC_010168


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  275 bits (1028),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 264/609 (44%), Positives = 440/609 (73%), Gaps = 26/609 (4%)

Query  143  VSENGKAAVAQVQFKVSLYSLEPSD--RKDVQSIVNAAKSTGVQIYFSKEITEDVSELFG  200
            +S +G +A+AQV   V+    E +D    +++++  + +  G+   ++  +T  V+E++G
Sbjct  118  ISADGATAIAQV--TVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILG  175

Query  201  PAEIIGVVIAFIVLLVMLGTLIAAG--LPLIMAVIGVGVGGTFALTGVIEMSSISPMLAL  258
            P+E++G ++AF+VLL+ +G+L+AAG  +   +  +GVGV G +A++++  ++S++P+LA+
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  259  MLGLAVGIDYSLFIVNRHRQQILAGMEMRESIARATGTSGKAVLFAGLTVVIALAALTIS  318
            MLGLAVGIDY LF+++R R ++ +G  ++++I+RAT+T+G +V+FAG TV+IAL +LT+ 
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  319  GlpflgvlglaaaatvafallialtltpailsllGRRIVSRRAWRKNAAHPGEADAKSEA  378
            G+PFLG +G+AAA +VA A+L++LTL PA+LS +GRR ++RR   + +++++ + ++  +
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE--RASTRSAGGSPRWTT  353

Query  379  KSHSAKGSGWGGFVTRHPivtlaasvlalivvalpaaslrlalpDGGSEPVDSSAFKSYQ  438
                     W G V R+P+++  A V +L VVALP  +++ +L   G+E  DS+   +Y 
Sbjct  354  T--------WIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  439  AIEKNFGAGMNGPIVVVGELPSGLTDAQVQQAQYNVADKLRSVQNVAAAVPVALSNDKRT  498
            ++   FG+G ++P+VV+       +D++   A   V+  L S+ NVA+  P ++S D  T
Sbjct  406  TVADAFGPGAQDPLVVLVR-----SDSDAASAVETVSTELGSLPNVATVSPGPVSADGST  460

Query  499  AVFQVIPKDGPASASTVQVVHDLREAGKDIKASTGVQVGLTGQTAANVDVSAKLGGALPL  558
            A++ VI+  GP  ++T  +V+D+R  G D   ST+VQV  TG TA  +D   +L +AL  
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALGDD---STSVQV--TGSTAIALDSDEQLRSALIA  515

Query  559  YlavvvglslilllsvfrsivvPLLATGGFLLSLAASFGGVVAVYQWGWLGSVFDVPHPA  618
            Y+A++VGLS++LL+ +FRS++VPL+ATGGFLLSL+A++G+ VAV+QWGWL+++ + P+  
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  619  AVLSFLPIIVIGVLFGLAMDYQVFITSGMREAFAHGENAKQAVRTGFGHaakvvvaaaII  678
            ++LS+LPIIV G+LFGLAMDYQVF+ S ++EA  HG ++++AVR+GF ++A VVVAAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  679  MTSVFAGFIFSHLTMIRPMGFALAFGVLIDAFVVRMTIVPAAMHLLGKSAWWLPKWLNKI  738
            M++VF GF +S  +++ ++++ALA GVL DA++VRM +VPA + LLG+SAWW+P+WL+K+
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  739  LPDVDVEGA  747
            LP +DVEGA
Sbjct  696  LPTIDVEGA  704

40) CMS_1399 in NC_010407


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  272 bits (1017),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 294/729 (41%), Positives = 478/729 (66%), Gaps = 21/729 (2%)

Query  1    MATLLYRLGRISFLHPWRvvaawilvlgillggglalggKTQESFSIPGTESQEVIDRLA  60
            M++LLYRLG +S    W VVA+W+LVL I  G +L+    +  +F +PGT+S   +  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   AVFPQAAGASA--QIVTEAPAGAKVtddadkaaieatakaaGEVDGVATALSPFSEYASD  118
            + FP ++ A++  Q+V ++++G    D +  ++    A+    V +V+ +L P    A  
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDP----ARP  116

Query  119  AVSDDGTVAITTVQFSGQSDQVTTATLDALKESAQAAEDAGLTVSFGGQVFQDIHYGVTV  178
            ++S DG+ AI+ V  ++  ++ +      L   A +  D G++  +GG +   +   +  
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  TEafgvlfaglvlvltfgSMLAAGLPLIgalvgvaasagallaasKFVTVSSASPLLAVM  238
            TE  G L A LVL+LTFGS++AAG  ++GALVGV+ +  ++LA S +  ++S +P+LAVM
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  239  IGLAVGIDYALFILMRHRTQLANGMPVERsastavatagsavIFAGVTVIIALLGLLVVQ  298
            +GLAVGIDY LF+L R R++L +G  V+ + + A ATAGS+V+FAG TVIIAL+GL VV 
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  299  IPFLTVMGLGAAFAVLLAMGVATTLLPAMLGLAGER-LRPKEGSRAARRAKAQSEGTQRT  357
            IPFL  MG++AAFAV +A+ ++ TLLPA+L+  G R L  +E      RA ++S G    
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE------RASTRSAGGSPR  350

Query  358  LGARWvkivtkvpiipvvivigiagllavPASQLQLGLPSGATEPAGSTSRVAYDTVSDA  417
              + W+  V + P+I+   V+G  +++A+P   +Q +L   + E ++ST R AY TV+DA
Sbjct  351  WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADA  410

Query  418  FGPGHNGPLVVLVDITQTTDPIGVLGEIGDEIRGLDDVAFVGTGTPNPSVDTAIIQVLPD  477
            FGPG ++PLVVLV     +D+ + +  ++ E+ +L +VA V+ G  ++   TA++ V+++
Sbjct  411  FGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAE  468

Query  478  SPPESAETTALMQSIRDLAPGLHDRYDTRVSVTGTTAVQNDISQRLDQALVPFGIVVVGL  537
            S P  + TT+L++ IR L+ +      T V VTG+TA+  D  ++L  AL+++  ++VGL
Sbjct  469  SGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGL  523

Query  538  SIILLMIVFRSIFVPIKAAVGFLLSVVVSFGTVVLIFQDGAFADVLGVTPG-PILSFMPI  596
            S++LL+++FRS++VP+ A+ GFLLS+  ++G+ V +FQ G +  ++    G P+LS++PI
Sbjct  524  SFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPI  583

Query  597  LLMAILFGLAMDYEVFLVSGMREDFVHHGDAKRAIVTGFSGAARVVTAAALIMFFVFAAF  656
            ++ +ILFGLAMDY+VFLVS ++E   H   ++ A+ +GF  +A VV AAA IM  VF +F
Sbjct  584  IVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGF  643

Query  657  VPEGAGVIKTIALGLAVGIFFDAFLVRMTLVPAAMALLGKRAWWIPRWLDRILPDVDIEG  716
                ++++ +IAL+LAVG++ DA+LVRM LVPA ++LLG+ AWWIPRWLD++LP +D+EG
Sbjct  644  ALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEG  703

Query  717  EGLRERQDD  725
             ++ + + +
Sbjct  704  AAFDDDRRE  712

41) SFUL_2814 in NC_021177


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  271 bits (1013),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 318/725 (44%), Positives = 501/725 (70%), Gaps = 22/725 (3%)

Query  1    MATFLYKLGRLAFRRRRYVALVWVallalagfgaasastatsssfsIPGTEAQRAFDLLE  60
            M+++LY+LG L+ R R+ V   W+ +L +A+  A S+   +S++F +PGT++ RA+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGTSADGATARVVFKAPEGEKVTDSANKGEIQGIVKELASGS--DQIAKVDDPFEV-  117
              FP T+   ++ ++V +++ G +VTD     +  ++   L  +     +  V DP++  
Sbjct  61   SEFPTTGEATTSLQLVVQSSGG-RVTD-----DAPSLTSALEQARVIPGVLAVTDPLDPA  114

Query  118  -QAVSQDGSTAYVSVSYKVNSMELTDKTTDALKDAGKDAQNNGMKVEIGGDALQVMPHT-  175
              ++S DG+TA   V+      E +D  T  L   + + +++GM  EIGG     +P+  
Sbjct  115  RPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEIL  174

Query  176  GaaeiigvaiaavvlviTFGSLIAAGLPLLTALIGVGIGVSLITALANVLDLGSTTSTLA  235
            G++E++G  +A +VL++TFGSL+AAG  +L AL+GVG+GV  I A++ +  +GS T+ LA
Sbjct  175  GPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILA  234

Query  236  MMIGLAVGIDYALFIVSryraelaegrereeaagraVGTAGSAVVFAGLTVVIALVGLAV  295
            +M+GLAVGIDY LF++SR+RAEL  GR  ++A GRA +TAGS+VVFAG TV+IALVGL+V
Sbjct  235  VMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTV  294

Query  296  VNIPMLTKMGFaaagtvaiavvialtlvpallGFAGKRVMGrkarkaaeaenrpeakpnM  355
            V IP L  MG+AAA +VA+AV+++LTL+PALL+  G+R +GR+ R ++ +   +      
Sbjct  295  VGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWT--  352

Query  356  GTRWArfvlrrpvwvllvgvlglgIIAVPAASLEMGLPDDGAQPKSTTQRQAYDTLSEGF  415
             T W   VLRRPV   +  V GL+++A+P  +++ +L   G++   +TQR AY T++++F
Sbjct  353  -TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAF  411

Query  416  GPGFNGPLMIVMDGKGSSDPKAAAERVREEIEGI-GVVTVTPATFNKAGDTAMITVIPKD  474
            GPG ++PL++++  ++ SD+ +A E V  E+ ++  V TV+P+  +  G TAM+TVI+  
Sbjct  412  GPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  475  RPSSHATEEVVHDIRDAGKDIKADTGGEVLVTGATAMNIDFSQKMNDALLPYlalvvgla  534
             P   AT  +V+DIR  G D     +  V VTG+TA+ +D  +++  AL++Y+AL+VGL+
Sbjct  470  GPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLS  524

Query  535  flllmlvfRSVLVPLKaalgfllsvvaalgavvavfQWGWLGSLFGVEQTGPIMSMMPIF  594
            FLLL+L+FRS LVPL A+ GFLLS+ AALG+ VAVFQWGWL+++    Q  P++S++PI+
Sbjct  525  FLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPII  584

Query  595  MVGVVFGLAMDYEVFLVTRMREAYVHGESPGQAIVTGFKHGarvvtaaavimmavfaGFI  654
            + G++FGLAMDY+VFLV+R++EA  HG SP +A+ +GF+++A VV AAA IM AVF GF 
Sbjct  585  VTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFA  644

Query  655  GSSEQMIKMIGFSLAIAVLFDAFVVRMAIVPAVLALLGKKAWWLPRWLDRALPNVDVEGE  714
             S+  ++  I+++LA++VL DA++VRM +VPA+L+LLG+ AWW+PRWLD+ LP +DVEG 
Sbjct  645  LSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

Query  715  KLQKQ  719
             ++ +
Sbjct  705  AFDDD  709

42) Bfae_15720 in NC_013172


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  271 bits (1013),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 295/734 (41%), Positives = 485/734 (67%), Gaps = 24/734 (3%)

Query  1    MSSSLYRLGRLMASLRWKvvgawvallvivgglavglggTFSTDIEIPGTEGQRGIDTLA  60
            MS+ LYRLG L A  RW VV++W+ +L+I +G+A++     S+++++PGT++ R++ TL 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   HRFPEMGGTSGQVVLRAQD-GTTVDDHQDEIDALMDEIAEIDGVAAAPSPFDEVSPGTRN  119
              FP  G ++  + L  Q  G  V D+   + + +++   I GV A   P+D   P+   
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISA  120

Query  120  DDDTALIAQFQMDGQTGEFPAESVDEITELVDGADTAALDASIGGQVLQSAEIPFgagev  179
            D+ TA IAQ  +++   E + E   E+  +  G    ++ A IGG +  +    +G+ E+
Sbjct  121  DGATA-IAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTEL  179

Query  180  igvivaliilaivFRSlvpaiipivtavvgvgvsmmalvaLSAGLEIPSVTTALGAMLGL  239
            +G +VA+++L + F SLV+A   ++ A+VGVGV++++++A+SA   I SVT  L+ MLGL
Sbjct  180  VGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGL  239

Query  240  AVGIDYALFILSRHRDQLSHGDDVHESIGTSLATSGSAVIFAGMTVIVALVGLFITGIPF  299
            AVGIDY LF+LSR R +L  G  V+++IG + AT+GS+V+FAG TVI+ALVGL + GIPF
Sbjct  240  AVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPF  299

Query  300  ltvmgvaaaatvalsvivaltMLPAIMGILGErlrprrtrrlMAENGGALPAADPQARPR  359
            L  MG+AAA +VA++V+++LT+LPA+++ +G R   RR R      GG+         PR
Sbjct  300  LGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGS---------PR  350

Query  360  RSLGRTWVRLVTKVPALTILVVIVGVGALAIPIKDLELALPDLGTEPTGTAARDTYDLVA  419
            ++   TW+  V + P ++ + V+ G++ +A+P+ +++ +L   G E  +++ R +Y  VA
Sbjct  351  WT--TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVA  408

Query  420  EEFGPGYNGPLLVTADIINSTDPLGVVDELESDIASLDHVKEVQLATPNQGADMAVVAVI  479
            + FGPG ++PL+V   + + +D+ + V+ + ++++SL +V  V  +  + ++  A+++VI
Sbjct  409  DAFGPGAQDPLVVL--VRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVI  466

Query  480  PEGGPTEQSTKDLVLALRGSAESWEEDLSISDVTVTGSTAVGIDVTDKLSDALLPFALFV  539
            +E+GP + +T  LV  +R+ ++        + V VTGSTA+++D  ++L  AL+++  ++
Sbjct  467  AESGPLDTATTSLVRDIRALGDD------STSVQVTGSTAIALDSDEQLRSALIAYVALI  520

Query  540  VGLSLILLALVFRSVWVPLKASVGYLFSVLAAFGATSMVFEYGWFNGPLFVDVNGPVVSF  599
            VGLS++LL L+FRS  VPL A+ G+L+S+ AA+G+T  VF+ GW++  +      P++S+
Sbjct  521  VGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSL  580

Query  600  MPIMVMGVLFGLAMDYEVFLVSRMREEFVHTGDARGAIERGFTANAPVVTAAALIMVAVF  659
            +PI+V G+LFGLAMDY+VFLVSR++E   H   +R A+  GF  +APVV AAA IM AVF
Sbjct  581  LPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVF  640

Query  660  AGFVTSGWFMLQPIavalavgvlvdafvvRMTFVPAVLALLGRHAWWLPGWLSRALPTVD  719
             GF  S   ++ +IA+ALAVGVL DA++VRM +VPA+L+LLGR AWW+P WL + LPT+D
Sbjct  641  FGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTID  700

Query  720  VEGEGLAAVLEHRR  733
            VEG ++    ++RR
Sbjct  701  VEGAAFD---DDRR  711

43) Celf_0364 in NC_015514


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  270 bits (1008),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 266/614 (44%), Positives = 433/614 (71%), Gaps = 14/614 (2%)

Query  244  VSADGSAAVAPVTFTVPQMELAQESKDALVAVFTDAPVDGVDVDFSAEIAGGVPellgag  303
            +SADG++A+A VT    + E A+E    L AV ++   +G+  ++++ ++++VPE+LG+ 
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  304  evigvvvagivlvvmlgTFVAAGLPILTalvgvgigalgaMSLSGVVEMVSVTPILGVML  363
            E++G +VA +VL++ +G++VAAG  +L ALVGVG+G LG +++S++  + SVTPIL+VML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  364  GLAVGIDYSLFIVNRHRRQLKQGYDVDESVGLANGTSGNAVVFAGATVLIALLALNVTGI  423
            GLAVGIDY LF+++R R +L+ G  V++++G A +T+G++VVFAGATV+IAL++L V GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  424  PFLGLMGTVGAFCVLVAVLIAVTMTPALLRLLGMRVLSRKERATLASRdpdadtapapLP  483
            PFLG MG  +AF V VAVL+++T+ PALL  +G R L+R+ERA+ +    ++    +   
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS-TRSAGGSPRWTTTWI  356

Query  484  GKPLRPMSTlgavarallsvvalvvvalpatelRLGLPDGSSEPHDSTQYRAYSTVAERF  543
            G  LR        + A+++ +A+V ++L + +  L +P+G  E  DSTQ  AY+TVA+ F
Sbjct  357  GAVLRR---PVIATFAVVGGLAVVALPLLGMQTSLVIPGG--EDPDSTQRAAYTTVADAF  411

Query  544  GEGQNGTllvvaelpeapaegeetavQAAVGRQVFEQDDVVAVAPIGTSDDGRTVAFQVI  603
            G G ++ L+V+      +A +       +V+ ++    +V +V+P   S DG T  + VI
Sbjct  412  GPGAQDPLVVLVRSDSDAASAV-----ETVSTELGSLPNVATVSPGPVSADGSTAMLTVI  466

Query  604  PAEGPTSESTEELVHTLRGLTLDGGVTIGVAGQASGNIDVSDTLADSLPTYlavvvglsl  663
            +  GP   +T  LV+ +R+L  D++ ++ V+G ++  +D  + L  +L +Y+A++VGLS+
Sbjct  467  AESGPLDTATTSLVRDIRALG-DDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSF  525

Query  664  lilivvFRSLFVPLIATLGFILSFFAALGGVVAIYQWGWLSGVFGVENPGPVLNFLPTVL  723
            L+L+++FRS++VPLIAT GF+LS+ AALG+ VA++QWGWL  +    +  P+L++LP ++
Sbjct  526  LLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIV  585

Query  724  VGILFGLAMDYMLFLGSGMREAYAHGAPARLAVVQGVRAGRSVVTAAAIIMISVFGGFVF  783
             GILFGLAMDY +FL S ++EA  HG+++R AV  G + + +VV AAA IM +VF GF +
Sbjct  586  TGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFAL  645

Query  784  SHSAMIRPIGFALAFGVLVDAFVVRMVLIPALMHLAGDGAWWLPRWLGRVLPDVDVEGAA  843
            S S+++ +I++ALA GVL DA++VRM+L+PAL+ L G +AWW+PRWL+++LP +DVEGAA
Sbjct  646  SPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAA  705

Query  844  L--ERRHPHEHEVA  855
            +  +RR++  +E+A
Sbjct  706  FDDDRREAAPNELA  719


 Score = 48.2 bits (163),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/113 (30%), Positives = 69/113 (62%), Gaps = 0/113 (0%)

Query  1    MAELLYRLGRGSARHARAVVAAWfavliaagvafvvaggtlaSSFSIPDTPTGKVTDRLE  60
            M+ LLYRLG  SAR  +AVVA+W+ VL+ A+   + +    +++F +P+T +++    LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EKLPSASGGTGTIVLSTQDGSAFTDEQRAAIADLVAEASDSPEVEEVVDPFAA  113
              +P+++ +T ++ L  Q +++   ++ ++++  + +A   P V  V DP+ +
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDP  113

44) SVEN_6136 in NC_018750


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  266 bits (994),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 294/637 (47%), Positives = 430/637 (68%), Gaps = 24/637 (3%)

Query  105  PQVASVADPFKAN--AVSGDRtttyayvtyeaaateltDAAHQGLDEAMERARDAGLVVE  162
            P V +V+DP+ +   ++S+D +T+ A VT      E +D     LD      RD G+  E
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  163  AGGDAVKIEQTMSGTGEKAGILVSAVVLVLTFGSLVAAGMPLLTALIGVGIGISAItalg  222
             GG        + G  E  G LV+ +VL+LTFGSLVAAG  +L AL+GVG+G+ +I A++
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  223  stfglssttstlaMMIGLAVGIDYALFIVSRYRSEItegreraeaagravgtagSAVVFA  282
            +   ++S T+ LA+M+GLAVGIDY LF++SR+R+E+  GR   +A GRA +TAGS+VVFA
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  283  GLTVIIALAGLAVVDVPMLTKMgltaagtvavavlvaITFVPALLGFAPVRVLARADRKR  342
            G TVIIAL GL+VV++P L  MG++AA +VAVAVL+++T++PALL+    R L+R +R  
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS  341

Query  343  HLGKPLSrrqqrraarrearrrPNLGARWAGFVLRHPVAVLLVGVMSLGAVAVPAASLEL  402
                            R A   P   + W G VLR+PV   +  V +L+ VA+P  +++ 
Sbjct  342  ---------------TRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQT  386

Query  403  GLPSEGSMAPHTTQRKAYDLLSGSFGPGFNGPLTVTV-EAKDAKAAAERLRTELERVDGV  461
            +L   G+  P++TQR AY  ++++FGPG ++PL V V    DA +A E + TEL  +  V
Sbjct  387  SLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNV  446

Query  462  AAVSPATTNPAGDTAVLTVVPRTGPADTATEELVRTLRGAAGGLESRTGAAEILVAGQTA  521
            A+VSP+  ++ G TA+LTV++ +GP DTAT  LVR +R+ +++      ++ + V+G TA
Sbjct  447  ATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDD------STSVQVTGSTA  500

Query  522  MFIDFSRTLDDALLPYlglvvglaflllmlvfRSVLVPLKaalgfllsvsaalgavvavf  581
            + +D    L  AL++Y++L+VGL+FLLL+L+FRS LVPL A+ GFLLS++AALG+ VAVF
Sbjct  501  IALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVF  560

Query  582  QWGWLADLFGVDQPGPVMSTLPIFMIGVVFGLAMDYEVFLVSRMREAHVHGARPGEAVVT  641
            QWGWL  +    Q  P++S LPI++ G++FGLAMDY+VFLVSR++EAH HG+ P EAV +
Sbjct  561  QWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRA  620

Query  642  GFRYGGRVVGAAAIIMTSVFAGFVLEDDDFVKMIGFGLATAVLFDAFVVRMVIVPALFGL  701
            GF+ ++ VV AAA IM++VF GF L    +V  I+++LA +VL DA++VRM++VPAL+ L
Sbjct  621  GFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTL  680

Query  702  LGKAAWWFPTWLDRLLPNIDVEGEKLSARRPVPADPE  738
            LG++AWW+P WLD+LLP IDVEG  +   R  +A  E
Sbjct  681  LGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNE  717

45) AORI_4945 in NC_021252


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  266 bits (995),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 287/702 (41%), Positives = 470/702 (67%), Gaps = 15/702 (2%)

Query  23   WLVVLCVSGGAALLFGQGTDDTFAIPGSESQEALDHLGRVFPQVSGTSAQLVVLVPEGQr  82
            WL+VL +++G AL   + +   F +PG++S  AL  L   FP  + +++ L  LV ++  
Sbjct  23   WLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQ-LVVQSSG  81

Query  83   adsaavrdsvsavvPELTGAPQVSTVVNPFDPAVHDAVSKDGRAALVTVQLDVGLADIQP  142
            +  +    S+++ + +    P V +V +P+DPA + ++S DG +A+  V ++    +   
Sbjct  82   GRVTDDAPSLTSALEQARVIPGVLAVTDPLDPA-RPSISADGATAIAQVTVGDIDEEQAD  140

Query  143  STRTVLAGIAQDLEHRIGHGTEVLTGGDAFSDKVPK-LSPTEGIGlvialvvllmvFGSF  201
               + L ++A +L ++ G ++E+   G++++  VP  L+PTE +G ++A++VLL+ FGS+
Sbjct  141  EVTSELDAVAAGLRDQ-GMAAEI---GGSLTSAVPEILGPTELVGALVAFLVLLLTFGSL  196

Query  202  IAAGMPLLTAILGVGvsvalvyaatsvatvsstaPMLAVMLGLAVGIDYALFLLSRHRDQ  261
            +AAG  +L A++GVGV+V  + A +++A ++S +P+LAVMLGLAVGIDY LF+LSR R +
Sbjct  197  VAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAE  256

Query  262  LAEGLGVEESIARATATAGSAVIFAGLTVVIALLGLFVAGIPFLTTMgiaaaggvavavi  321
            L  G  V+++I+RATATAGS+V+FAG TV+IAL+GL V GIPFL  MGIAAA +VAVAV+
Sbjct  257  LRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVL  316

Query  322  vaitlipallaFAGEW-LrpkkprkarktkkktrFSLRWVRLATKSPWVTIGLIVGVLAI  380
            +++TL+PALL+  G + L  +    +R +    R +  W+    + P ++   +VG LA+
Sbjct  317  MSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAV  376

Query  381  ASVPALDLRLALPDNGTDEDGTPARVAYDAVAEHFGPGFNGPLVVTADILSTTDPVGITN  440
             ++P L+++ +L   G ++ ++  R AY +VA+ FGPG ++PLVV   + S +D+ +  +
Sbjct  377  VALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVL--VRSDSDAASAVE  434

Query  441  GIADDIRKVPGVAVVPLATPNPKGDTAIIQVVPTTGAYDEATDDLVERLRSMEGQFKDRY  500
             ++ ++  +P VA V+ +  ++ G TA++ V++ +G+ D AT  LV  +R++     D  
Sbjct  435  TVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALG---DDST  491

Query  501  GVQTAVTGFTAVGIDVSTQLGDALLPFGIlvvglslvllAMVFRSILVPLKATFGYLLSI  560
            +VQ  VTG TA+++D   QL  AL+++  L+VGLS++LL ++FRS+LVPL AT G+LLS+
Sbjct  492  SVQ--VTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSL  549

Query  561  GAAFGATSFVFGQGHLAEALGVTRTGSVISFLPIILMGVLFGLAMDYEVFLVSRIREDYV  620
            GAA+G+T  VF  G L   +   +  +++S+LPII+ G+LFGLAMDY+VFLVSRI+E   
Sbjct  550  GAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHR  609

Query  621  HHGDAHKAIETGFvsasrvvtaaavIMLGVFAAFVPDGSATIKPIAFSLAVGVFVDAFLV  680
            H   ++ A+ +GF  ++ VV AAA IM +VF +F    S+ + +IA++LAVGV+ DA+LV
Sbjct  610  HGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLV  669

Query  681  RMTLVPAILALLGPRAWGLPPWLDRKLPVFDAEGDGLVHELR  722
            RM LVPA+L+LLG  AW +P WLD+ LP +D EG ++ ++ R
Sbjct  670  RMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRR  711

46) L083_5015 in NC_021191


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  265 bits (990),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 320/707 (46%), Positives = 477/707 (68%), Gaps = 9/707 (1%)

Query  1    MATYLYRLGKLSFRRRKTvlalwlalvaalgigaFTLAGSTSDSFSIPGTEAQQAQDLLA  60
            M++ LYRLG LS R R +V+A WL ++   +  A++    +S +F +PGT++ +A   L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTL-  59

Query  61   ErfpqagaggaqarvvfaaPAGSTLTARRDAVEDVLGEIKSGGRVAAVSDPFQG---TIN  117
            E    + + ++ +  +   ++G+ +T    ++   L + +    V AV+DP++    +I+
Sbjct  60   ESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSIS  119

Query  118  QDKTVAYATVSYKVEAQdltaadraaltraldtGRAAGLTVEAGGD-ALQEPGEQGAGEA  176
             D + A A V+     ++ +    + L       R  G++ E GG  +   P   G+ E 
Sbjct  120  ADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTEL  179

Query  177  IGFvvaalvllvTFGSLVAAGLPlltailgvgvavagvqiatgFLDLSSTTPTLALMLGL  236
            +G +VA LVLL+TFGSLVAAG  +L A++GVGV+V G+   +++  ++S TP LA+MLGL
Sbjct  180  VGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGL  239

Query  237  AVAIDYALFIVSRYRHEIAQGRTGIEAAGRAVGTAGSAVTFAGLTvvialaalavvNIPF  296
            AV+IDY LF++SR+R E+  GR   +A GRA +TAGS+V FAG TV+IAL +L+VV IPF
Sbjct  240  AVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPF  299

Query  297  LTQMglaaagavvvavlialtllpallgfagSRVFgrttgrrrrDAEGDAGPTAGRRWAQ  356
            L +MG+AAA AV VAVL++LTLLPALL+  G R +GR      R A G  +P     W  
Sbjct  300  LGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGG--SPRWTTTWIG  357

Query  357  VVTRRPvltlaasvlgllvvaIPALDLRLGLPGDGTAAADTTERKAYDLLSDGFGPGFNG  416
             V RRPV++  A V GL VVA+P L+++ +L   G   +D+T+R AY  ++D+FGPG ++
Sbjct  358  AVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQD  417

Query  417  PLivvv-dgadakagagrattaikaLPDVAVVSPALVNPAGDTAILQVIPASAPDDEKTT  475
            PL+V+V  ++DA ++    +T + +LP+VA VSP+ V++ G TA+L VI+ S+P D  TT
Sbjct  418  PLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATT  477

Query  476  DLVHAIRDL-DVDTSLSVTGTTAVNIDVSARMGAALGPYlavivvlafllltvlfRSVLV  534
             LV+ IR L D  TS+ VTG+TA+ +D   ++ +AL +Y+A+IV L+FLLL +LFRS LV
Sbjct  478  SLVRDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLV  537

Query  535  PLKAIGGFLLSVIATSGAVVAVFQWGWGADLLGVAQTGPIASLIPVLLIGIVFGLAMDYE  594
            PL A GGFLLS+ A+ G+ VAVFQWGW   ++  +Q  P+ SL+P+++ GI+FGLAMDY+
Sbjct  538  PLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQ  597

Query  595  VFLVTRMREEHVHGAAPTPAVVNGFSHGARVVTAAAIIMISVFSGFILGDDAIIKSIGFa  654
            VFLV+R++E H HG++P  AV  GF ++A VV AAA IM +VF GF L+  +++ SI++A
Sbjct  598  VFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALA  657

Query  655  laaailldaFVVRMTLVPAVMTLLGRRAWWLPRWLDRILPDVDVEGD  701
            LA ++L DA++VRM LVPA++TLLGR AWW+PRWLD++LP +DVEG 
Sbjct  658  LAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

47) SBI_07050 in NC_016582


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  265 bits (990),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 290/660 (44%), Positives = 444/660 (68%), Gaps = 26/660 (3%)

Query  47   IPGSQSQKGIDVLEKSLPSSTGVTAQI-VFVAPEGSTVNDPAYRAVIEKTVAAARKAPQV  105
            +PG++S +++  LE  +P++   T+ + + V + G+ V D A  + +  ++  AR  P V
Sbjct  47   VPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDA--PSLTSALEQARVIPGV  104

Query  106  ESAVDPFEA--RSVSADRRTALAQVLYPIKRDALRDSSVTALEEIAFKARSSGLRTEVGG  163
             +  DP+++   S+SAD  TA+AQV      +   D   + L+ +A   R  G+ +E+GG
Sbjct  105  LAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGG  164

Query  164  TIYSTaglevgigeviglvvavvvlvvTFGSllagglplltaltglavglvglllvSNIA  223
            ++ S+    +G  E++G +VA +VL++TFGSL+A+G  +L AL G++VG++G+L  S IA
Sbjct  165  SLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIA  224

Query  224  KVSSTAPSLALMIGLAVGIDYALLILSRHRTQLASGMDaeesaaratgtagsavvFAGLT  283
             ++S +P LA+M+GLAVGIDY L++LSR R++L SG   +++ +RAT+TAGS+VVFAG T
Sbjct  225  PIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGAT  284

Query  284  VIIALCGLTVVGIPFLSVMGLAAAGTVLMAVLVAITLLPALLGFAGTRLRPRPGSradrr  343
            VIIAL GLTVVGIPFL+ MG+AAA +V +AVL+++TLLPALL+  G R   R    + R 
Sbjct  285  VIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRS  344

Query  344  erdmaggrrrYGGERWarlvtrrplvtvvavCI----GLGAVALPASQLSLAMPDNGTAA  399
                       G+ RW+       L   V   +    GL+ VALP   +  ++   G   
Sbjct  345  AG---------GSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGED  395

Query  400  PESTQRKAYDLISDAFGPGRNGRLLVLVRTADTDPKAAATEVATGIDRLDLPDVMSISSP  459
            P+STQR AY  ++DAFGPG ++ L+VLVR+ D+D+ +A   V+T ++   LP+V ++S+ 
Sbjct  396  PDSTQRAAYTTVADAFGPGAQDPLVVLVRS-DSDAASAVETVSTELG--SLPNVATVSPG  452

Query  460  QVGADGRTAIVTVVPKAGPRAEATVQLVRDIRSVTPELGAATDAEVLVTGSTAAAIDVSD  519
             V+ADG TA++TV++ +GP   AT  LVRDIR++  +      + V VTGSTA A+D  +
Sbjct  453  PVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDE  507

Query  520  RLGDSLLPFaaivvglallllllvFRSIVVPLKAAFGFLLSvgaafgavvavfQWGWLAD  579
            +L  +L+++ A++VGL++LLL+L+FRS++VPL A+ GFLLS+GAA+G+ VAVFQWGWL  
Sbjct  508  QLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDP  567

Query  580  QFGVPTTGPVFSFMPIVLIAVLFGLAMDYEVFLVSRMREEYVHTGRHRESVIAGSRYASR  639
                P   P++S++PI++ ++LFGLAMDY+VFLVSR++E   H    RE+V AG + ++ 
Sbjct  568  IVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAP  627

Query  640  VVTAAALIMFSVFASFVTAEDLTLKPIAFGLAVGIVVDAFLVRMTLVPAVLVLMGKSAWW  699
            VV AAA IM +VF +F  +    + +IA++LAVG++ DA+LVRM LVPA+L L+G+SAWW
Sbjct  628  VVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWW  687

48) Sros_6914 in NC_013595


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  262 bits (981),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 302/670 (46%), Positives = 461/670 (69%), Gaps = 9/670 (1%)

Query  41   TASNFTMPGTESQRALDALAKHFPEaggatgtivvaaPEGKQLTTPQARQAIGALTKEAS  100
            +++ F +PGT+S RAL +L  +FP +G AT ++ +    +    T +A    +AL  +A 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSAL-EQAR  99

Query  101  GLPGVVAAVDPFQIG--AVSPDGRHALVQVQFAAVNDRVTDGQRaayakvgagaeaagLR  158
             +PGV+A  DP++ +  ++S+DG  A+ QV  + +++  +D   +    V+AG    G+ 
Sbjct  100  VIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMA  159

Query  159  VEHGGEVMTSEPEI-GSTEalgvavaavvlvITFGSLVAAGMTMLTALIGVGVGMAGLFA  217
             E GG + ++ PEI G+TE +G  VA +VL++TFGSLVAAG  ML AL+GVGVG+ G++A
Sbjct  160  AEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILA  219

Query  218  LSSAIELTSTAPVLALMLGLAVGIDYSLFITSRHRQNLLDGLEPEEaaaravgtagsavv  277
            +S+   + S +P+LA+MLGLAVGIDY LF+ SR R +L  G   ++A +RA +TAGS+VV
Sbjct  220  FSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVV  279

Query  278  FAGATVVIALAGLAVVNIPFLTVMGLAASGTvavavlvaITLQPALLGFAGHRILPRKHR  337
            FAGATV+IAL GL+VV IPFL  MG+AA+ +VAVAVL+++TL PALL+  G+R L R++R
Sbjct  280  FAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRER  339

Query  338  TARQAVPGERGGFGFRWAYIVTRWRvlvilagvlglgglavpaaEMRLALPDAGTAQAGS  397
            ++ ++ +G        W   V R+ V+  +A V GL+ +A+P   M+ +L  +G  +++S
Sbjct  340  ASTRS-AGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDS  398

Query  398  PAREAYDLISAGFGPGFNGRLAAVVSGGSAEATGRAAKEATALIQATKGVIAVTPPQPNA  457
              R AY  ++ +FGPG ++ L  +V ++S  A+  A    ++ + +   V +V+P   +A
Sbjct  399  TQRAAYTTVADAFGPGAQDPLVVLVRSDSDAAS--AVETVSTELGSLPNVATVSPGPVSA  456

Query  458  SGTTVLLAVIPATGPTDAATETLVHDIREKVRGIDGAQVSLTGMTAIGIDVSEKLSDAlp  517
             G+T +L+VI+ +GP D+AT +LV+DIR    G D++ V +TG TAI++D  E+L  AL 
Sbjct  457  DGSTAMLTVIAESGPLDTATTSLVRDIRAL--GDDSTSVQVTGSTAIALDSDEQLRSALI  514

Query  518  vylllvvglsvlllmlvfrsvlvPVKAALGFLLTVGATFGITVAVFQQGWLAGLLGVDTP  577
             Y+ L+VGLS LLL+L+FRS LVP+ A+ GFLL++GA++G TVAVFQ GWL  ++     
Sbjct  515  AYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQG  574

Query  578  GPLVSflpilligilfglAMDYQVFLVSRMREDFVHGDTAQQATISGTGHGARVVTAAAL  637
             PL+S+LPI++ GILFGLAMDYQVFLVSR++E   HG ++++A  +G  ++A VV AAA 
Sbjct  575  NPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAA  634

Query  638  IMISVFSGFVLLDDPIIKSMGFALAVGVAIDAFVVRMTIVPAVMSLLGDSAWWLPRPLAR  697
            IM +VF GF L   +++ S+++ALAVGV  DA++VRM +VPA+++LLG SAWW+PR L +
Sbjct  635  IMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDK  694

Query  698  VLPNVDIEGE  707
            +LP +D+EG 
Sbjct  695  LLPTIDVEGA  704

49) ACPL_5433 in NC_017803


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  262 bits (978),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 323/698 (47%), Positives = 491/698 (71%), Gaps = 22/698 (3%)

Query  1    MATLLHRLGLGAARHRIvvtvawllalvavafgavrlSGETVNTFRIPGQESTTALDLMK  60
            M++LL RLG+ +AR R  V  +WLL L+  A  A+     +   F +PG +S+ AL  + 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFGDASAGAT-VQVVFETPAGQKITD-PVIVNQVTQSVTAFGKLPGVVAVSNPFDQQNP  118
              F  ++ ++T +Q+V ++++G+   D P + + + Q+      +PGV+AV++P+D   P
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARV----IPGVLAVTDPLDPARP  116

Query  119  SVSRDLSTALTTVTYGVQPSEVTDDERSAITAALAQAKTG----GLIVEARGEALSNAAD  174
            S+S D +TA++ VT G    ++ +++   +T+ L    +G    G+  E  G   S  ++
Sbjct  117  SISADGATAIAQVTVG----DIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPE  172

Query  175  IGGASEGIGVIVALIVLALSYGSLVAAGMNlltaivgvgigvagittlSGFVQLQSTTPI  234
            I G++E +G +VA++VL L++GSLVAAG N+L A+VGVG+GV GI ++S++  + S TPI
Sbjct  173  ILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPI  232

Query  235  LAVMLGLAVGIDYALFIVTRFRHELRAGRDVESaaayavgtagsavvtagltvvIALAGL  294
            LAVMLGLAVGIDY LF+++RFR ELR+GR V+ A + A +TAGS+VV AG TV+IAL GL
Sbjct  233  LAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGL  292

Query  295  SVVGIPFLTEMGlaasativvavlvaitlvpailGFIGKRAlprrlrdlppttdHLAEGR  354
            +VVGIPFL EMG+AA+ ++ VAVL+++TL+PA+L+ +G+RAL RR R    ++   + + 
Sbjct  293  TVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSA---GGSP  349

Query  355  GFIRGWANTVTRKRVTSlllavlalavvalPFFKMQTTLAQRSPEG--STQAKADAIIDQ  412
                 W  +V R+ V + +  V +LAVVALP++ MQT+L   + E+  STQ  A + + +
Sbjct  350  RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVAD  409

Query  413  RFGPGVSGPLLILI-DGPQAVPYAATVQKQISTLPDVALATPPRPDPKQSAALITVIPGS  471
             FGPG  +PL++L+  +++A +   TV  ++++LP+VA  +P    +  S+A++TVI+ S
Sbjct  410  AFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAES  469

Query  472  GAEDQKTVDLVHRIRDEVADSAGAKVYVTGQTAISIDVSQKLNAALPvylalvvglafvl  531
            G+ D  T  LV+ IR    DS++ +V  TG TAI++D  ++L +AL  Y+AL+VGL+F+L
Sbjct  470  GPLDTATTSLVRDIRALGDDSTSVQV--TGSTAIALDSDEQLRSALIAYVALIVGLSFLL  527

Query  532  lvlvfrsllvpvvgvlgfllTIGSAFGATVAVFQWGWLSGLVNAGSTGPIISLAPIIIVG  591
            LVL+FRS+LVP+++  GFLL++G+A+G+TVAVFQWGWL  +V+A    P++SL PII+ G
Sbjct  528  LVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTG  587

Query  592  ILFGLAMDYQVFLVSRMHEAHAHGASPRDAIVTGFRQAAPVVLaaatimfavfaafVPQG  651
            ILFGLAMDYQVFLVSR+HEAH HG+SPR+A+ +GF+Q+APVV+AAA+IM AVF +F    
Sbjct  588  ILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSP  647

Query  652  NDTVKPIAFALAVGIAFDAFIIRMIAVPAALALLGRSA  689
            +  V +IA+ALAVG+  DA+++RMI VPA L+LLGRSA
Sbjct  648  SSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSA  685

50) HMPREF9154_2471 in NC_018142


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  262 bits (978),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 303/724 (42%), Positives = 459/724 (64%), Gaps = 21/724 (2%)

Query  4    MSAQLYALGRWCFRHAKLVLASWLVIvlavggaalafgggfaDVFKIPGSPSQVALDKLK  63
            MSA LY LG    R    V+ASWL+++L  +G AL+     +  F +PG+ S  AL  L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  64   MTFPQ-GAMTQAAAIFVAPEGGRVEDFRGVIEDTISELEAIDFVDSATSPWNERISGMVS  122
              FP  G  T +  + V + GGRV D    +  ++ +   I  V + T P  +     +S
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDP-LDPARPSIS  119

Query  123  DDGRAAIVAILI-DVKGAPSNEQLAQLTAVAERMAQRLPQGATLDMGGQAFNIELPR-LS  180
             DG +AI  + + D+    ++E  ++L AVA  + +   QG + ++GG ++   +P  L+
Sbjct  120  ADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRD---QGMAAEIGG-SLTSAVPEILG  175

Query  181  VTEIaglgvalvvltlvlgslvasglplltavtgvgvtmavmlLIARLASINSTTPMLAV  240
             TE+ G  VA++VL L +GSLVA+G  +L A+ GVGV +  +L ++ +A+I S TP+LAV
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  241  MLGLAVGIDYALFILSRHRNQLGEGMTAEESTARAVGTAGSAVVFAGLTVFIALLGLGVS  300
            MLGLAVGIDY LF+LSR R +L  G   +++ +RA +TAGS+VVFAG TV+IAL+GL V 
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  301  GIPFLTVMGafaalaivlavfiaLTMLPALMgllgerlrprpkkprrrrkprgggAFAW-  359
            GIPFL  MG  AA+A+ +AV+++LT+LPAL++ +G R   R  ++  R    +     W 
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPR---WT  352

Query  360  --WGRVTTGHPvvvllvvvvCLGALTIPGLGLRTALPNSGQHTEGAPDRVTYDLISQHFG  417
              W      +PV+  + VV  L+ +++P LG++T+L  +G +  ++ +R +Y  +++ FG
Sbjct  353  TTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFG  412

Query  418  VGRNGPLVLTADVISSKDPLKLVADLKEEVEAIDGVAAVPLATPNQNAEVAMLQVVPTTG  477
             G ++PLV+   V S  D+   V  +  E+ ++  VA+V+ +  + ++  AML V++ +G
Sbjct  413  PGAQDPLVVL--VRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESG  470

Query  478  PDDPATADLVQTLRDRHDQWLERYGVETAVTGMTAMQIDVNSRLVGALLPFGMlvvglsl  537
            P D AT+ LV+ +R   D+     +    VTG TA+ +D + +L +AL+++  L+VGLS+
Sbjct  471  PLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSF  525

Query  538  vllaavFRSVWVPVKATLGFLLSVGAAFGATKLVFNDGHLTQMVNLERGMPVISFLPILL  597
            +LL  +FRS  VP+ AT GFLLS+GAA+G+T  VF+ G L  +V+  +G P++S+LPI++
Sbjct  526  LLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIV  585

Query  598  MGILFGLAMDYEVFLVSRIREEYVHGKKPVDAIRDGMAASGPvvvaaavIMFSVFAFFVP  657
             GILFGLAMDY+VFLVSRI+E   HG  P +A+R G   S+PVVVAAA IM +VF  F  
Sbjct  586  TGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFAL  645

Query  658  EGISSIKQIAFALAVGVAIDAFCVRMTLVPAVMALLGKRAWWLPRWLDKALPTFDVEGEV  717
               S +  IA+ALAVGV  DA+ VRM LVPA+++LLG+ AWW+PRWLDK LPT+DVEG  
Sbjct  646  SPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAA  705

Query  718  LTEK  721
            + + 
Sbjct  706  FDDD  709

51) SC3A4.16c in NC_003888


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  261 bits (977),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 299/741 (41%), Positives = 486/741 (66%), Gaps = 23/741 (3%)

Query  1    MATFLYRLGRTAFRRRWlvtllwvvvlggvglgaakapaagDDGTSF-MPGIEAQKAFDL  59
            M+++LYRLG  + R RW V   W++VL   +  A  +   +  G  F +PG ++ +A+  
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAG--FDVPGTDSSRALST  58

Query  60   IGERFPGSDANGAHARVVFIAPDGEKVTAGDYRMAVD-ELVSTVAEGAQVDSAVDPFKAD  118
            +   FP ++   +  ++V + + G +VT +   ++   E    ++    V  ++DP ++ 
Sbjct  59   LESEFPTTGEATTSLQLV-VQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARP-  116

Query  119  AVSKDASTAYATVNYKVKADDLTDASKDGLEKAVDQARGSGLTVEVGGTALASQPaaggs  178
            ++S D++TA A V      ++ +D     L+      R+ G++ E+GG+  ++ P   G+
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  179  aeaigialaavvlliTFGSLAAAGLPLLTAVIGVGVSMCAIlalgstlgltmttgtlasm  238
            +E +G  +A +VLL+TFGSL AAG  +L A++GVGV++ +ILA+++   +   T  LA M
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  239  lglAVGIDYALFVVSRYREERANGHAPREAAGLAVGTAGSAVVFAGLTVIIALVGLTVIG  298
            LGLAVGIDY LFV+SR+R E  +G+  ++A G A +TAGS+VVFAG TVIIALVGLTV+G
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  299  VPMLTKMGlcaagavaiavlvaltlvpallGMWPNAVLSRRVRKFREADKRDGNAKHHSE  358
            +P L  MG+ AA AVA+AVL++LTL+         A+LS+  R  R  ++R+  + + + 
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLL--------PALLSWMGR--RALGRRERASTRSAG  346

Query  359  TPDNGGTRWARFVMRRpvavlllgvavlgvlalpaTHLEMGMPGDEAKPTSTTERRAYDA  418
             +    T W   V+RRPV   +  V+ L+V+ALP   ++ ++    +    +T+R AY +
Sbjct  347  GSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTT  406

Query  419  LADGFGAGFNGPLTVVADVKdatdpqaaaatmaEQIKDTDGVVSVTPPQFNEAGDTALFS  478
            +AD+FG+G ++PL V+  V+  +D+ +A  T++ ++     V +V+P   +  G TA+++
Sbjct  407  VADAFGPGAQDPLVVL--VRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLT  464

Query  479  AVPATGPNTEATKEIVQTIRAERPGLEADTGATFEVTGSTAMNIDVAQALQDALVPYlav  538
             ++ +GP   AT  +V+ IRA      +D +++ +VTGSTA+ +D  + L+ AL++Y+A+
Sbjct  465  VIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTAIALDSDEQLRSALIAYVAL  519

Query  539  ivllslllllivfrsilvPVKAALGFLLSVLASLGTVVAVFQWGWGAGLLGVEQTGPIMS  598
            IV LS+LLL+++FRS+LVP+ A+ GFLLS+ A+LG+ VAVFQWGW   ++   Q  P++S
Sbjct  520  IVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLS  579

Query  599  LMPIFLVGIVFGLAMDYEVFLVARMREAYVHGERPGQAVVTGFRHSarvvaaaavimmav  658
            L+PI++ GI+FGLAMDY+VFLV+R++EA  HG  P +AV +GF++SA VV AAA IM AV
Sbjct  580  LLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAV  639

Query  659  FSGFIGSGESMIKTIGFGlavavlfdafvvRMALVPAVLALLGEKAWWLPRWLDRVLPRV  718
            F GF  S  S++ +I+++LAV+VL DA++VRM LVPA+L+LLG  AWW+PRWLD++LP +
Sbjct  640  FFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTI  699

Query  719  DVEGTALTSQTRPSTSVDVEE  739
            DVEG+A+  + R +++ ++  
Sbjct  700  DVEGAAFDDDRREAAPNELAS  720

52) Namu_0993 in NC_013235


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  259 bits (966),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 326/695 (47%), Positives = 493/695 (71%), Gaps = 17/695 (2%)

Query  1    MARLLYRLGTFAHRRRWAVVITWlvvltlagvgaatlggstsNTFSIPGQESTIALDKIS  60
            M+ LLYRLG ++ R RWAVV +WL+VL +A+  A +    +S  F +PG +S+ AL  + 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   TQF-GAGDNNASARVVLQAPAGQTLTTPENAAAVGTLVDELGRLPGVVNASNPLNPQAPG  119
            ++F  +G+  +S ++V+Q+++G+     ++A+++ + +++   +PGV+  ++PL+P  P+
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRV---TDDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  120  VNADQSTGYSTVTYGVPQGGVSAAQQDALLGAVDQARTSGLTVEVTGTAVTNQGQVPaga  179
            ++AD +T+ + VT G  +   +      L +     R  G++ E+ G+  +   ++  G+
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEI-LGP  176

Query  180  geaigvilallilalTYGSLVVAGMNlltagvgvgvgvlgitivSGFVDLQSTTSVLATM  239
             E +G ++A+L+L LT+GSLV AG N+L A VGVGVGVLGI   S++  + S T++LA M
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  240  LGLAVGIDYALFIITRFRHELQRGADvptaigvavgtagsavvtagltvvIALVFLFVAG  299
            LGLAVGIDY LF+++RFR EL+ G  V  AIG A +TAGS+VV AG TV+IALV L V G
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  300  IPFLTQMGiaaaativvavlvaltlvpailSFLGlralprrrrnapTVPAGGKHAVEAPG  359
            IPFL +MGIAAA ++ VAVL++LTL+PA+LS +G RAL RR        A+ + A  +P 
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE------RASTRSAGGSPR  350

Query  360  FYQRWVGAVTRHKVIAVLVTFVALGVMAIPFFSMRTTLVAVPAEGTTQARAEQ--LLADG  417
                W+GAV R+ VIA +    +L+V+A+P+++M+T+LV   +E+   ++      +AD+
Sbjct  351  WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADA  410

Query  418  FGPGFNGPLTMMF-EGPDaaaqaqgasgslsglTDVALVTPPIPNADGTAALLTVIPQSG  476
            FGPG ++PL ++   ++DAA+  +  S  L++L +VA V+P   +ADG++A+LTVI++SG
Sbjct  411  FGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESG  470

Query  477  PTTEATEQLVHDLRAVLPTVTSGVDTYVTGATAVSNDVASALNAALPIYlaivvglavil  536
            P   AT  LV+D+RA L   +++V+  VTG+TA++ D    L +AL  Y+A++VGL+ +L
Sbjct  471  PLDTATTSLVRDIRA-LGDDSTSVQ--VTGSTAIALDSDEQLRSALIAYVALIVGLSFLL  527

Query  537  lvlvFRSIlvplvgvlgflltvgaalgatvavfQWGWLSALVNLDSTGPLISLTPIIVIG  596
            LVL+FRS+LVPL++  GFLL++GAALG+TVAVFQWGWL ++V+     PL+SL PIIV G
Sbjct  528  LVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTG  587

Query  597  ILFGLAMDYQVFLVSRMHEAHAHGAAPLDAIRTGFRQaapvvvaaaaIMFSVFAGFVPAG  656
            ILFGLAMDYQVFLVSR+HEAH HG++P +A+R+GF+Q+APVVVAAAAIM +VF GF  + 
Sbjct  588  ILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSP  647

Query  657  DGPIKSIAFALAIGILVDAFVVRMVLVPAALALLG  691
             + + SIA+ALA+G+L DA++VRM+LVPA L+LLG
Sbjct  648  SSLVGSIALALAVGVLADALLVRMILVPALLTLLG  682

53) L083_4308 in NC_021191


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  257 bits (962),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 319/690 (47%), Positives = 503/690 (73%), Gaps = 8/690 (1%)

Query  1    MATFLHRLGRGAFRHRFLVTAIWFvvllatgagaatlagstvNTFSIPGQESTTALNLID  60
            M+++L RLG  + R R  V A W++VLL +++ A +    +   F +PG +S+ AL+ ++
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   DRFGDGANGATAQVVMAAPAGAKITDQANAAKVIAIVGELGKLPGVASATNPLDAKSPTV  120
              F   ++++T+  ++  ++G+++TD  +A+ + + + +   +PGV + T+PLD+  P++
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTD--DAPSLTSALEQARVIPGVLAVTDPLDPARPSI  118

Query  121  SADQSAAFSTVTYPVPAAQLTEEQRTALLDevaaagtggltvevtgeaSQPDGADIGGPA  180
            SAD ++A++ VT      + ++E  + L D VAA+  +       G +  +  ++I GP+
Sbjct  119  SADGATAIAQVTVGDIDEEQADEVTSEL-DAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  181  EIIGVVVALLVLTFTYGSLVTAGMNlitaivgvgigalgittltgFVDLQSTTPILAIML  240
            E++G +VA+LVL +T+GSLV+AG N++ A+VGVG+G LGI +++++  + S TPILA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  241  GLAVGIDYALFIVTRHRQELRQGRTPEDaaalavgtagsavvtagitvvialaglaiagi  300
            GLAVGIDY LF+++R R ELR GR  +DA + A +TAGS+VV AG TV+IAL GL++ GI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  301  PFLTEMGlaaaativvavlvavtlvpavlGFIGrralprklrnappaaaaDSGRAIYRGW  360
            PFL EMG+AAA ++ VAVL+++TL+PA+L+ +GRRAL R+ R +  +A++ + ++    W
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTT--TW  355

Query  361  AATISRFRvlsllaavvvlaviaiPFFSMRTSLIQPAA--TGSTQAKAQALIAQHFGPGF  418
             +++ R  V++ +A V  LAV+A+P+++M+TSL+ P++   +STQ  A + +A+ FGPG 
Sbjct  356  IGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGA  415

Query  419  SGPLLVLVDGDNAAQRAT-TIAAEVKNLpgvavvapptpnpagtaaLITVIATSEPDSTG  477
             +PL+VLV +D+ A  A  T+++E+ +LP VA V+P   ++ G++A++TVIA S P  T+
Sbjct  416  QDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTA  475

Query  478  TVNLVHDMRDSFKGQNGVYVTGQTAVSVDVSQKLDQALPRYlilvvglalillilvFRSI  537
            T +LV+D+R    +  +V VTG TA+++D  ++L  AL  Y+ L+VGL+++LL+L+FRS+
Sbjct  476  TTSLVRDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSF  535

Query  538  LvpvvgvvgFLLTIGSALGATTAVFQWGWLQQIVNASTTGPLLSLSPIIVIGILFGLAMD  597
            LVP+++  GFLL++G+ALG+T AVFQWGWL+ IV+A+   PLLSL PIIV GILFGLAMD
Sbjct  536  LVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMD  595

Query  598  YQVFLVSRMHEAHAHGAAPRDAVVTGFRQAAPVVVAAATIMFAVFAGFVPEGNDTIKPIA  657
            YQVFLVSR+HEAH HG++PR+AV +GF+Q+APVVVAAA+IM AVF GF    +  + +IA
Sbjct  596  YQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIA  655

Query  658  FALAIGILFDALIVRMIAVPAALSLLGRAG  687
            +ALA+G+L DAL+VRMI VPA L+LLGR++
Sbjct  656  LALAVGVLADALLVRMILVPALLTLLGRSA  685

54) Snas_5740 in NC_013947


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  255 bits (951),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 282/689 (41%), Positives = 458/689 (67%), Gaps = 23/689 (3%)

Query  41   TDDAFAIPGSESQDTLDYLKRVFPQVSGTSAQLVLVV-PEGEKVDTADNRAAVASAVKRI  99
            +  +F +PG++S  +L  L   FP  + +++ L LVV + G +V  +D+ ++++SA+ + 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRV--TDDAPSLTSALEQA  98

Query  100  KRLDQVAAAADPFGKDVSGAVSRDGRAALIAVPLDVDLAGVTAATRSdledvaadlaeda  159
            + +  V A +DP++     ++S DG +A+  V ++ D+    A   +   D  A    D 
Sbjct  99   RVIPGVLAVTDPLDPA-RPSISADGATAIAQVTVG-DIDEEQADEVTSELDAVAAGLRDQ  156

Query  160  GPGAKVYSGGAAFSNPVP-TLSPTEGIGlvvallvlllMFRSVIASVMPLLTAVLGVGVS  218
            G +A +   G++++++VP  L+PTE +G +VA+LVLLL F S++A+   +L A++GVGV+
Sbjct  157  GMAAEI---GGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVG  213

Query  219  VALIMTATLVVPISSTAPMLAVMLGLAVGIDYALFLLSRHRDQLGEGLDIEESVARATAT  278
            V  I++ + + PI+S +P+LAVMLGLAVGIDY LF+LSR R +L  G  ++++++RATAT
Sbjct  214  VLGILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATAT  273

Query  279  AGSAVIFAGLTVVIALLGLAVAGIPFLTTMGvaaavavvfavaiavtlvPALLSFAGDrm  338
            AGS+V+FAG TV+IAL+GL+V GIPFL  MG+AAA AV  AV +++TL+PALLS  G R 
Sbjct  274  AGSSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRA  333

Query  339  rprkpkrrknkpprakprIARW---WvrtatrvplltvlllvvglgvCAIPAAELRLALP  395
              R+ +     +  +    +RW   W+ +  R P+++ + +V GL+V A+P   ++ +L 
Sbjct  334  LGRRERASTRSAGGS----PRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLV  389

Query  396  DNGTEAVGSPARDTYDVVNDHFGPGYNGPLIVTADIIESRDPIGLVDDIADEIRDLPGVE  455
              G E  +S  R +Y  V D FGPG ++PL+V   +    D+ + V+ ++ E+  LP V 
Sbjct  390  IPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVL--VRSDSDAASAVETVSTELGSLPNVA  447

Query  456  SVPLATPNPKGDTGIIQVIPTTAPDSPQTDALVERLREKEQHFLDRYDTKTAVTGITAVG  515
            +V+ +  ++ G T+++ VI+ ++P    T +LV  +R   ++      T   VTG TA++
Sbjct  448  TVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIA  502

Query  516  IDVSAQLGKALLPFGIlvvglslvllAMVFRSIWVPIKATAGYLLSVGAAFGATSFVFQQ  575
            +D   QL  AL+++  L+VGLS++LL ++FRS+ VP+ AT+G+LLS+GAA+G+T  VFQ 
Sbjct  503  LDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQW  562

Query  576  GHLADVLNVAHVGSVISFLPIILMGVLFGLAMDYEVFLVSRIREDYVHGGDPHHAIETGF  635
            G L  +++ ++  +++S+LPII+ G+LFGLAMDY+VFLVSRI+E   HG  P++A+ +GF
Sbjct  563  GWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGF  622

Query  636  IsasrvvvaaavimfavfaafvPEGSATIKPIAFSLAVGVFVDAFLVRMTLVPAVLALLG  695
              ++ VVVAAA IM AVF +F    S+ + +IA++LAVGV+ DA+LVRM LVPA+L+LLG
Sbjct  623  QQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLG  682

Query  696  HRAWGLPPTLDRALPVFDAEGDSLVHELR  724
            + AW +P  LD+ LP +D EG ++ ++ R
Sbjct  683  RSAWWIPRWLDKLLPTIDVEGAAFDDDRR  711

55) AMIS_34840 in NC_017093


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  255 bits (954),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 262/597 (44%), Positives = 434/597 (73%), Gaps = 8/597 (1%)

Query  190  VSEDGTTAVASVVFDEAQMDVTPETKDAVIDHVTDGVPA-GVEAEFSNEITQSVPQvlgv  248
            +S DG+TA+A V  ++ + + + E     +D V+ G+   G+ AE++  +T +VP++LG 
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSE-LDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  249  gevaglvvaaITLLVMLGALIAAALPIvtalvgvgvgvtaslalSGAVDMLSITPVLGVM  308
             E+ G +VA + LL+ +G+L+AA+  ++ ALVGVGVGV + LA+S+   + S+TP+L+VM
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  309  LGLAVGIDYCLFILNRHRRQLLDGVELHESIALANGTSGNAVVFAGSTvlvallalNVTG  368
            LGLAVGIDYCLF+L+R R +L  G  ++++I+ A +T+G++VVFAG+TV++AL++L V G
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  369  IGFLGMMGTVGaicvavaviiavtltpallallgtRILPRRLKATI-GQSHAGRVPTAPM  427
            I FLG MG  +A+ VAVAV++++TL PALL+ +G R L RR +A+  + + + R  T+ +
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWI  356

Query  428  STT--RalltavaglavlivlaipalSMRLGLPDGSSEAEDSTQYQAYMLIEEKFGAGVN  485
            ++   R+++++ A ++ L V+A+P L+M+ +L   ++E  DSTQ  AY  + + FG+G +
Sbjct  357  GAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQ  416

Query  486  GPLLVVAELPSAVTEPTAEQARIGGAIMAVDNVTAVAPIGQSSDKKLIAFQVIPAEGPNS  545
            +PL+V   L  + +++++    ++  + ++ NV++V+P   S+D     + VI+  GP  
Sbjct  417  DPLVV---LVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLD  473

Query  546  ESTAQLVRDLRElsvpgaalgvagsasgNIDISEQLSDVLPlylgvviglsliililvFR  605
             +T+ LVRD+R L+  ++++ V+GS++  +D  EQL   L  Y+++++GLS+++L+L+FR
Sbjct  474  TATTSLVRDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFR  533

Query  606  SILVPLTATLGFVLSLFATFGGITAIFQWGWLGAVFGVHDPGPVLSFLPTILIGILFGLA  665
            S+LVPL AT GF+LSL A++G+  A+FQWGWL+++    +  P+LS+LP I+ GILFGLA
Sbjct  534  SFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLA  593

Query  666  MDYQLFLVSGMREAYAHGAPARLAVRQGLHAGRTVVTAAAIIMISVFGGFIFSHTTMIRS  725
            MDYQ+FLVS ++EA  HG+++R AVR G++ +  VV AAA IM +VF GF +S ++++ S
Sbjct  594  MDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGS  653

Query  726  LGFGLAFGVLADAFLVRMLLIPAVMHLLGRSAWWLPRWLDRILPNVDVEGAALERSH  782
            ++++LA GVLADA+LVRM+L+PA++ LLGRSAWW+PRWLD++LP +DVEGAA++  +
Sbjct  654  IALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDR  710


 Score = 49.8 bits (169),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 71/115 (62%), Gaps = 8/115 (6%)

Query  1    MAELLYRIGRFSARRAWAVLITWMVVLGLSVTAYLTLGGT--LSSQVTIPGTATAKVTDQ  58
            M+ LLYR+G +SAR  WAV+ +W++V  L ++A ++L+G    S+   +PGT +++    
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLV--LLIAAGVALSGMRFSSAGFDVPGTDSSRALST  58

Query  59   LAERFPSASGGSGT--IVFHTADGSVFTTEQQTAIGALLKSTGERDGVAAATDPF  111
            L   FP+++ ++ +  +V ++++G V  T++  ++ + L  +    GV A TDP+
Sbjct  59   LESEFPTTGEATTSLQLVVQSSGGRV--TDDAPSLTSALEQARVIPGVLAVTDPL  111

56) L083_5324 in NC_021191


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  254 bits (947),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 317/724 (44%), Positives = 494/724 (69%), Gaps = 19/724 (2%)

Query  1    MATLLHRLGRASFRHRRlvvvlwlvllaalggaalaFKGTSSSDFTMPGTESQRAIDALA  60
            M++LL RLG  S R R+ VV  WL++L   +G AL+    SS++F +PGT+S RA+ +L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   HEFPEASGATGTI-VVRAPQGAKLTD--PQLTAAVQGLVKEAGALPGVVGAVDPFAAK--  115
             EFP ++ AT ++ +V  + G+++TD  P LT+A++    +A  +PGV++  DP+ +   
Sbjct  61   SEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALE----QARVIPGVLAVTDPLDPARP  116

Query  116  ALSPDIRYALVQVQFQQPADEITPTQRDAYEHSGAAAERAGLTVEHGGEVLNAPPEV-GG  174
            ++S+D   A+ QV   +  +E +       +  +A+    G++ E GG + +A PE+ G 
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGP  176

Query  175  TESigviialvvlviTFGSLVAAGMTMLNALIGVGAGMAGLYALSSLFQMTSVTPVLALM  234
            TE +G ++A++VL++TFGSLVAAG  ML AL+GVG G+ G+ A+S++  + SVTP+LA+M
Sbjct  177  TELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVM  236

Query  235  LGLAVGIDYSLFITSRHRQHLLENIEPEEaaaravgtagsavFFAGLTVIIALAGLSVVG  294
            LGLAVGIDY LF+ SR R +L      ++A +RA +TAGS+V FAG TVIIAL GL+VVG
Sbjct  237  LGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVG  296

Query  295  IPFLSVMglaaagtvavavlvaitllpallgFAGDKVLPRKLRAN--RAAATEGFGFRWa  352
            IPFL+ MG+AAA +VAVAVL+++TLLPALL+  G + L R+ RA+   A+++      W 
Sbjct  297  IPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWI  356

Query  353  rivirlrvpvivvgilglgalalpaaDMRLALPDASAGAEGTPAREAADLVTEGFGPGFN  412
              V+R  V      + GL+ +ALP  +M+ +L  +++   ++  R A   V+++FGPG +
Sbjct  357  GAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQ  416

Query  413  GRLALVVSSDSPRLTADGADKAVRELQGTPNLLAVTAPTFSRDKRTALLAIIPKDGPTSA  472
            + L ++V SDS   +A + +    EL + PN+ +V++   S D  TA+L++I+  GP  +
Sbjct  417  DPLVVLVRSDSD--AASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDT  474

Query  473  STETLVHDVRDKVHALGSADFAVTGQTAVGIDVSEKLSDAMPIYlvlvvglsvlllMIVF  532
            +T +LV+D+R   +  +S+   VTG TA+++D  E+L  A+  Y+ L+VGLS LLL+++F
Sbjct  475  ATTSLVRDIRALGD--DSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLF  532

Query  533  RSILVPLKAALGFLLTVGATFGVTVLIFQEGHLAGLFGLDTPGPLVSflpilligilfgl  592
            RS+LVPL A+ GFLL++GA++G TV +FQ G L  +       PL+S+LPI++ GILFGL
Sbjct  533  RSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGL  592

Query  593  AMDYEVFLVSRMREDFVHGAEPRAATISGMGHGARVVTAAALIMISVFAGFALIDDPIIK  652
            AMDY+VFLVSR++E   HG+ PR A  +G  ++A VV AAA IM +VF GFAL   +++ 
Sbjct  593  AMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVG  652

Query  653  SMGFALALGIAVDAFVVRMTIVPAVVSLLGRGAWWLPRWLDRVLPNVDIEGETL---RRE  709
            S+++ALA+G+  DA++VRM +VPA+++LLGR+AWW+PRWLD++LP +D+EG ++   RRE
Sbjct  653  SIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRRE  712

Query  710  LSAE  713
             +++
Sbjct  713  AAPN  716

57) SCAB_76791 in NC_013929


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  252 bits (941),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 303/725 (42%), Positives = 496/725 (69%), Gaps = 30/725 (4%)

Query  1    MSTLLYRLGRFAYRRKWSVIGAWSvlllvavlaalGLMKPFTTST-TIPGTEAQRTLDVV  59
            MS+LLYRLG ++ R +W+V+++W ++LL+A   AL+ M+ F+++   +PGT++ R+L  +
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMR-FSSAGFDVPGTDSSRALSTL  59

Query  60   QAEFPSDQSHLTGRIVFRAPRGETLTTGDVARIVRRTVDEAADVLGVRSVTAP-SASSGT  118
            ++EFP+     T+  +   + G  +T  D A  +  ++++A  + GV +VT P  ++  +
Sbjct  60   ESEFPTTGEATTSLQLVVQSSGGRVT--DDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSADGRTGIAALTFTTDKTGTLSEATTNGVERLVAEARREGLTGEIGGDAFSKVEVKVMG  178
            +SADG T+IA +T   D     ++  T+ ++ + A  R +G+++EIGG +++     ++G
Sbjct  118  ISADGATAIAQVT-VGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGG-SLTSAVPEILG  175

Query  179  PGEAVGVLIALGILVFVFRSLRAAVIPvatalvgvavgvlgllsltsvvtMDSTSVILAV  238
            P E VG L+A+ +L++ F SL AA   +  ALVGV+VGVLG+L+++++  ++S + ILAV
Sbjct  176  PTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAV  235

Query  239  MLGLAVGIDYALFIVSRHQTQVRAGMEPEESaglatgtaggavvfagatvviaLAALSVV  298
            MLGLAVGIDY LF++SR ++++R+G   +++ G AT+TAG++VVFAGATV+IAL +L+VV
Sbjct  236  MLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVV  295

Query  299  NIPFLTVMGLGaaatvvvsvsiavtLLPAVLGLMGRNIATSTVPVLRRSVERAPVSARQP  358
             IPFL  MG++AA +V V+V +++TLLPA+L+ MGR         L R   R   S+R +
Sbjct  296  GIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRR-------ALGR---RERASTRSA  345

Query  359  AGQR-----WAAMVARRRWsvllvslvglgvlavPAADLR--LGLGGTQDPDTSAGRAQK  411
            +G       W + V RR     +  + GL+V+A+P  +++  L + G +DPD++   A  
Sbjct  346  GGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  412  LVDDGFGPGYSGTLVVLVQGERTEVVPAAERMAGVVRDLPGVASVTPAVRAESGHAALLS  471
             V D+FGPG  + LVVLV+++ ++  +A E ++  +  LP VA+V+P+  +  G +A+L+
Sbjct  406  TVADAFGPGAQDPLVVLVRSD-SDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLT  464

Query  472  VTSTGGPETETTKRVLAEIRNARGAVEKNSGTEINVTGTTAVNIDVANKLSSALPvycll  531
            V + +GP   +T  ++ +IR        + +T ++VTG+TA+ +D  ++L SAL  Y  L
Sbjct  465  VIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTAIALDSDEQLRSALIAYVAL  519

Query  532  vmglallllvvvfralavplKaalgfllslgaslgalvavfQWGWLSDLLGIKTTGPVLS  591
            ++GL++LLLV++FR++ VPL A+ GFLLSLGA+LG+ VAVFQWGWL  ++      P+LS
Sbjct  520  IVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLS  579

Query  592  FLPMLLVGILFGLAMDYEVFLVSRMREEYAHGLPPVEAMVRGFGHGakvviaaalimiav  651
            +LP+++ GILFGLAMDY+VFLVSR++E   HG +P EA+  GF ++A VV+AAA IM AV
Sbjct  580  LLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAV  639

Query  652  FGSFVFADMQVIKGMGFALGVGVLLDAFVVRMTLVPAVMAVLGRKAWWLPRFLHRALPDM  711
            F +F ++   ++ ++++AL+VGVL DA++VRM LVPA++++LGR AWW+PR L++ LP +
Sbjct  640  FFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTI  699

Query  712  DIEGE  716
            D+EG 
Sbjct  700  DVEGA  704

58) SACTE_3624 in NC_015953


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  250 bits (932),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 295/673 (44%), Positives = 473/673 (71%), Gaps = 18/673 (2%)

Query  47   LPGTEAQRAFDLLGEKFPAANADGATARVVLRAPDGEKIGAPENKAALEATLTGVKDSSA  106
            +PGT++ RA+  L   FP++    ++ ++V+++++G      ++ ++L ++L   +  ++
Sbjct  47   VPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGR---VTDDAPSLTSALEQARVIPG  103

Query  107  RIGQISDPFASK--AVSADGttayaqvtytaaESDLADGDRTGLDKALESGRDQGLTVEA  164
             ++ ++DP+ +   ++SADG+TA AQVT    + + AD   + LD    + RDQG++ E 
Sbjct  104  VLA-VTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEI  162

Query  165  SGNALAAAEESH-TAEAIGFALAAVILLITFGSLVAAGLPLVTALVGVGVSMAAITALSG  223
            +G+  +A  E    +E +G  +A ++LL+TFGSLVAAG  ++ ALVGVGV++ +I A+S+
Sbjct  163  GGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSA  222

Query  224  PLDLNSNASALATMLGIAVGIDYALFIVSRYRSEradgydareaaarangtagsaVVFAG  283
               + S ++ LA MLG+AVGIDY LF++SR+R+E   G   ++A +RA +TAGS+VVFAG
Sbjct  223  IAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAG  282

Query  284  LTVVIALAGLAVVNLPIltamglaaagavviavlvattlvpallgFAGERVRGRRREKTV  343
             TV+IAL GL+VV +P+L  MG+AAA AV +AVL++ TL+PALL+  G R  GRR E++ 
Sbjct  283  ATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRR-ERAS  341

Query  344  PSAAGTEPGRRGPGQRWISYVLRRPARMlilavvalgvvalpaTQLELGLPDDGSKTASS  403
              +AG  P R+     WI+ VLRRP    +  V +L+VVALP   ++ +L   G+  + S
Sbjct  342  TRSAGGSP-RWTTT--WIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDS  398

Query  404  TQRKAYDILSESFGPGFNGPLTVTVDDQDPAVARSGAEAMGTSLSGLPDVAAVTPAAFNE  463
            TQR AY  ++++FGPG ++PL V V  +  A   S+ E+++T L++LP+VA+V+P++ + 
Sbjct  399  TQRAAYTTVADAFGPGAQDPLVVLVRSDSDAA--SAVETVSTELGSLPNVATVSPGPVSA  456

Query  464  SGDTAIITVIPRSAPGSDATKDLVDDIRVLAGDLRSDTGARSLVTGTTALNIDISDKFSA  523
             G TA++TVI+ S+P   AT  LV DIR L++D     ++   VTG+TA+ +D  +++ +
Sbjct  457  DGSTAMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRS  511

Query  524  AIvpylalvvglavlvlilvFRSVLVPVKaalgfllsvlaslgalvavfQWGWLKDLIGL  583
            A+++Y+AL+VGL+ L+L+L+FRS LVP+ A+ GFLLS+ A+LG+ VAVFQWGWL  ++  
Sbjct  512  ALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQA  571

Query  584  EQTGPVMSLMPVLMVGIVFGLAMDYQVFLVTRMREAYVHGADARTAIETGFKHSATVVTA  643
             Q  P++SL+P+++ GI+FGLAMDYQVFLV+R++EA  HG+ +R A+ +GF++SA VV A
Sbjct  572  PQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVA  631

Query  644  AALIMISVFAGFVGSHDAMIKSLGFGLavavafdafvvRMTIVPAVLALLGKRAWSLPAW  703
            AA IM +VF GF  S  +++ S++++LAV+V  DA++VRM +VPA+L+LLG+ AW +P W
Sbjct  632  AAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRW  691

Query  704  IDRILPHVDIEGE  716
            +D++LP +D+EG 
Sbjct  692  LDKLLPTIDVEGA  704

59) Strvi_6774 in NC_015957


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  250 bits (933),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 298/715 (42%), Positives = 474/715 (67%), Gaps = 39/715 (5%)

Query  41   EEEDLSMPGTESQKAFDLLDERFPDSNSQGAEARLVFQAPDGQRVTARENKAAVQDTLGS  100
               ++ +PGT+S +A+  L+  FP +    +  +LV Q+++G RVT  ++ +++  +L  
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGG-RVT--DDAPSLTSALEQ  97

Query  101  LDGGDQVASTTDPYESG--AVSEDGTIAYSTITYSEGAVDLTESTKSALEDAANQARDAG  158
                  V + TDP +++  ++S DG+ A + +T ++   + ++   S L+  A   RD G
Sbjct  98   ARVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQG  157

Query  159  LTVEIGGSALDSEEEPGGTTELIgvavaavvlvlalgslvaaglslltallgvaIAFGLV  218
            ++ EIGGS   +  E  G TEL+G  VA +VL+L++GSLVAAG ++L AL+GV+++   +
Sbjct  158  MAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGI  217

Query  219  SALAVPLGLTSTVAILALMLGLAVGIDYALFITSRFREECAQGSEPEEAAGRAVGTAGSA  278
             A++    + S  +ILA+MLGLAVGIDY LF+ SRFR E   G   ++A GRA +TAGS+
Sbjct  218  LAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSS  277

Query  279  VVFAGATVFIALVGLGVVGIPELTKMgmggagavalavlvaltlvpalFGLFGRRIlpra  338
            VVFAGATV+IALVGL VVGIP L  MG+++A AVA+AVL++LTL+PAL++  GRR     
Sbjct  278  VVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRR-----  332

Query  339  lrkaagaprrgagNCATSHDEPADDRRPIAAKPEKRIGTRWARFVLRRPV-AVLMVAGLS  397
                           A ++ E A  R   +A    R  T W   VLRRPV A + V G +
Sbjct  333  ---------------ALGRRERASTR---SAGGSPRWTTTWIGAVLRRPVIATFAVVG-G  373

Query  398  LGAVALPALSLELGLPGDESKSVETTQRRGYDLLSEGFGPGFNGPLTVVVDASKSANTRA  457
            L+ VALP L+++ +L    +   ++TQR +Y  ++++FGPG ++PL V+V     +++ +
Sbjct  374  LAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAAS  431

Query  458  TTNQVVKTVRGVDGVASVGDPVLSRTKDTAILTAIPNTAPNSGETKDLVHAIRGAVSGVE  517
            + + V   + ++  VA+V+   +S    TA+LT I++++P    T  LV+ IR+      
Sbjct  432  AVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL-----  486

Query  518  ADTGAAILVTGTTAMNIDISEAMSDALIPYltvviglavllllvvfrsvlvpvKAALGFl  577
            +D ++++ VTG+TA+ +D  E +  ALI+Y+++++GL+ LLL+++FRS LVP+ A+ GFL
Sbjct  487  GDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFL  546

Query  578  lsvgaafgvlvavfQWGWAADLLGIEQTGPVMSLMPILIIGIVFGLAMDYEVFLLTRMRE  637
            LS+GAA+G  VAVFQWGW   ++   Q  P++SL+PI++ GI+FGLAMDY+VFL++R++E
Sbjct  547  LSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHE  606

Query  638  AHVHGASPGEAIVGGFRHSGRvvaaaaiimisvfaGFVGMSSPTIQTMgvglaaavlfda  697
            AH HG+SP EA+ +GF++S+ VV AAA IM +VF GF   +S+ + +++++LA +VL DA
Sbjct  607  AHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADA  666

Query  698  flvRMAIVPAVLALLGHRAWWLPRILDRVLPNVDIEGEAL--TRRIPASATVPDT  750
            +LVRM +VPA+L+LLG+ AWW+PR LD++LP +D+EG A+   RR +A+  ++ T
Sbjct  667  LLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAST  721

60) SBI_04396 in NC_016582


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  250 bits (934),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 287/700 (41%), Positives = 469/700 (67%), Gaps = 36/700 (5%)

Query  41   TNDSFSIPGTEAQKAFDVLEQRFPGGNAQGATARVVFRAPAGEKMTDAANKATVQKTVRE  100
            ++ +F +PGT++ +A+  LE  FP      ++ ++V ++++G    DA++ ++     R 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARV  100

Query  101  LRSGSDEVASVADPYKAGGVSKDKTTAYVLTSYKVSAMELE--DKTRDALKEAGEDARAS  158
            + +    V +V+DP  ++  S     A  ++   V+ ++ E  D     L   + + R  
Sbjct  101  IPG----VLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQ  156

Query  159  GLTVEIGGDALEQMPET-GATEIIGIAISAVVLLITFGSLVAAGLPLLTAiigvgigisg  217
            G++ EIGG     +PE  G+TE++G  ++ +VLL+TFGSLVAAG  +L A++GVG+G+ G
Sbjct  157  GMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLG  216

Query  218  italattlglssttstlaMMIGLAVGIDYALFIVSRYraelaegqereeaagravgtagS  277
            I A+++   ++S T+ LA+M+GLAVGIDY LF++SR+RAEL  G+  ++A GRA +TAGS
Sbjct  217  ILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGS  276

Query  278  AVVFAGLTVVIALAGLAVVNIPMLSKMGFAAAGTvviavliaislipallGFAGSKVLSR  337
            +VVFAG TV+IAL GL+VV IP L+ MG+AAA +V +AVL++++L+PALL+  G + L+R
Sbjct  277  SVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR  336

Query  338  KVRkaakkgaegeaageekPNAGTRWAR------Fvlrrpvtvllvgvlglgaaalpaas  391
            + R           A+   + ++ RW+       +      T  +VG L++ A +L +  
Sbjct  337  RER-----------ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQ  385

Query  392  lelglPDDGSQPTSTTKRKAYDLMSDGFGPGFNGPLMVVVDAKGSDDPKGAVEQARKAIR  451
              L +P+ G +P  +T+R AY  ++D+FGPG ++PL+V+V  ++  D+ +AVE     + 
Sbjct  386  TSLVIPG-GEDP-DSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELG  441

Query  452  DVDGVASVSPAQFNKANDTAMLTVISKYKPSSVDTEDVVHHIRDEAASLKSGTGAEMLVT  511
             +  VA+VSP+  +    TAMLTVI+   P    T  +V++IR       ++ ++ + VT
Sbjct  442  SLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRA-----LGDDSTSVQVT  496

Query  512  GQTAMNIDISQKLNDALLPYlglvvglaflllmvvfRSLLVPLKaalgfllsvvaalgav  571
            G TA+ +D  ++L  AL++Y++L+VGL+FLLL+++FRS+LVPL A+ GFLLS+ AALG+ 
Sbjct  497  GSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGST  556

Query  572  vavfQWGWGGSLFNVEEPGPIMSMMPIFMIGVVFGLAMDYEVFLVTRMREAYVHGERPGQ  631
            VAVFQWGW +++ +  +  P++S++PI++ G++FGLAMDY+VFLV+R++EA  HG  P +
Sbjct  557  VAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPRE  616

Query  632  AVVTGFRHGARVVTAAAVIMMSVFAGFIGSSESMVKMIGFGLAIAVFFDAFIVRMTIVPA  691
            AV +GF+++A VV AAA IM +VF GF  S+ S+V  I+++LA++V+ DA++VRM +VPA
Sbjct  617  AVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPA  676

Query  692  VLALLGKAAWWLPRWLDKALPNVDVEGEGL---RKQLAPD  728
            +L+LLG++AWW+PRWLDK LP +DVEG ++   R++ AP+
Sbjct  677  LLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPN  716

61) Achl_1319 in NC_011886


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  247 bits (923),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 272/623 (44%), Positives = 439/623 (71%), Gaps = 22/623 (3%)

Query  216  VSEDGKAAVAQVQFNGSINGLSPEVRQQVQDIAHGTSAAGVTALASKEITEDISELFgia  275
            +S DG +A+AQV   +  +  + EV  +++ +A G    G++A  +  +T  ++E++G +
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  276  eiigiavaalvliiMLGTLVAAglplvmavmgvgvgvgITFALSGLFDMSSISPMLALML  335
            E++G  VA LVL++ +G+LVAAG  ++ A++GVGVGV   +A+S++  ++S++P+LA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  336  GLAVGIDYSLFIVNRHRTQLLAGMDPEESVARATGTSGNAVVFAGLTVIIALAALVVPGL  395
            GLAVGIDY LF+++R R++L +G   +++++RAT+T+G++VVFAG TVIIAL +L V G+
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  396  PFlavmglaaagtvavavlvaitltpaMLSLIGRRIISKRAWAKANAHNAEPGHEAADDA  455
            PFL+ MG+AAA +VAVAVL+++TL PA+LS +GRR +++R +A + +  + P        
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP--------  349

Query  456  KDRERSTHGWGGLVTRHPVLAMVAGVIllgtlalpatqlqlalpDGGSEPVDSEAYQAYD  515
                R T  W G V R+PV+A  A V  L+ +ALP   +Q +L   G+E  DS    AY 
Sbjct  350  ----RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  516  VTARSFGEGVTGPIVAVGEFPAGLDEAAATTLQYDIADKLRSVDNVVAAVPVAISDDRRT  575
              A +FG G  +P+V +       D  AA++++  ++  L S+ NV +  P ++S D  T
Sbjct  406  TVADAFGPGAQDPLVVLVRS----DSDAASAVE-TVSTELGSLPNVATVSPGPVSADGST  460

Query  576  AVFQVIPEEGPASASTVKVVSELRGLNGEIKADYDVAMGLTGQTAGNIDVSTKLGDALPP  635
            A++ VI+E GP  ++T  +V ++R+L ++       ++ +TG TA  +D   +L  AL +
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIA  515

Query  636  YlaivvglslillllvfrsivvPllatggfllslaaafgavvavYQWGWLGTVFDVANPG  695
            Y+A++VGLS++LL+L+FRS++VPL+ATGGFLLSL+AA+G+ VAV+QWGWL+ + + ++  
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  696  AVLSFLPIILIGVLFGLAMDYQVFIASGMREAFMHGSTAKEAVRVGFRHaaavvtaaaII  755
            ++LS+LPII+ G+LFGLAMDYQVF+ S ++EA  HG++++EAVR GF+++A+VV AAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  756  MVSVFAGFIFSHLTMVRPLGFAMAFGVLLDAFVVRMTIVPAVMYLLGEKSWWLPRWLDRI  815
            M +VF GF +S  ++V ++++A+A GVL DA++VRM +VPA++ LLG  +WW+PRWLD++
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  816  LPDVDVEGAKLSRPEKDKASAEL  838
            LP +DVEGA +    ++ A+ EL
Sbjct  696  LPTIDVEGAAFDDDRREAAPNEL  718


 Score = 37.4 bits (122),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 42/157 (27%), Positives = 88/157 (57%), Gaps = 10/157 (6%)

Query  1    MALLLYRLGKFSYRRRwlvlsl---wlvalvavggsaaaFHGTLSNNFQIPGTETQRIAD  57
            M+ LLYRLG +S R RW V++     L+   +V+ S+  F    S  F++PGT++ R   
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFS---SAGFDVPGTDSSRALS  57

Query  58   KLKEDLPSASGGTAT--IVFEAPDGGFTDASRAAVTDALKKLETLPDVRGTVDPF-ATQA  114
             L  ++P+++ +T++  +V ++++G  TD + +++T AL +   +P+V +  DP+ ++++
Sbjct  58   TLESEFPTTGEATTSLQLVVQSSGGRVTDDA-PSLTSALEQARVIPGVLAVTDPLDPARP  116

Query  115  QVDQAGQAITDGEQQLAAGQARLDASKAQLEAGKAQL  151
             +   G +          ++ + D   ++L+A  A L
Sbjct  117  SISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGL  153

62) SBI_02216 in NC_016582


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  242 bits (902),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 313/731 (43%), Positives = 497/731 (68%), Gaps = 34/731 (4%)

Query  1    MAAFLYRLGRLAfrrrwwvtllwvavlavvgfgavKAPAAPDTGNAMPGIESQKAFDLMD  60
            M+A+LYRLG L+ R RW V   W+ VL + +  A+ +   + +G  +PG +S +A+  ++
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGAKADGASARIVFVAPHGEKVTAADNRAAVEKVVHEVADGRQVAGAVDPFQA--RA  118
              FP +    +S ++V V + G +VT  D+ +++   +++      V +  DP+++   +
Sbjct  61   SEFPTTGEATTSLQLV-VQSSGGRVT--DDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSKDAGTAYATVTYKVKADDLTDASKKTLEDAVQQARDAGLTVEVGGNalatqpaaggaa  178
            +S D++TA A VT     ++ +D     L+      RD G++ E+GG+  ++ P   G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  egigiaiaaVVLLITFGSLAAAGLPLLTAVVGVGISIASIMAlastfglsgttgtlasml  238
            E +G  +A +VLL+TFGSL AAG  +L A+VGVG+++ +I+A+++   +++ T  LA ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  239  glaVGIDYAMFVVSRYREERARGHEPEEaaglaagtagsaVVFAGLTVVIALAGLSVVGI  298
            GLAVGIDY +FV+SR+R E   G+  ++A G A++TAGS+VVFAG TV+IAL GL+VVGI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  299  PLLTKMglaaagavavgvlialTLIPALLGFLPRAVLsrsarrgakakeakegseHNGGS  358
            P+L  MG+AAA AVAV+VL++LTL+PALL+ + R  L+R  R ++++          G++
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSA--------GGSP  349

Query  359  RWA--RFvlrrplpvll--ACVAGLGAIAIPVTGLQ--LGMPGDEAKPTSATERRAYDAL  412
            RW+  ++      PV+   A V+GL+ +A+P+ G+Q  L +PG+E     +T+R AY ++
Sbjct  350  RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGED--PDSTQRAAYTTV  407

Query  413  AEGFGPGFNGPLTIVVDAKDTGDANStadtkaaartiadriaatkGVVSVSPPRLNAAGD  472
            A++FGPG ++PL ++V  +  +DA S+ +T ++             V +VSP  ++A G 
Sbjct  408  ADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLP------NVATVSPGPVSADGS  459

Query  473  TAVFSATPATAPTDEKTKDLVRTIRAERPALESATHASFEVTGSTAVNIDVAQKVQDALI  532
            TA+++  + ++P D  T  LVR IRA    L   + +S +VTGSTA+ +D  ++++ ALI
Sbjct  460  TAMLTVIAESGPLDTATTSLVRDIRA----LGDDS-TSVQVTGSTAIALDSDEQLRSALI  514

Query  533  PYlavvvglafllllvvfrsllvplKaaagfllsvlaafgavvavfQWGWGASLLGVEQT  592
            +Y+A++VGL+FLLL+++FRS+LVPL A++GFLLS+ AA+G+ VAVFQWGW  +++   Q 
Sbjct  515  AYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQG  574

Query  593  GPIISLMPISLVGIVFGLAMDYEVFLVTRMREAYVHGDRPGQAIVTGFRHSarvvvaaal  652
             P++SL+PI + GI+FGLAMDY+VFLV+R++EA  HG  P +A+ +GF++SA VVVAAA 
Sbjct  575  NPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAA  634

Query  653  immavFSGFVGSAESMIKMMGFGLAIAVLFDAFVVRMALVPAVLALLGDRAWWLPRWLDK  712
            IM AVF GF  S+ S++  ++++LA++VL DA++VRM LVPA+L+LLG  AWW+PRWLDK
Sbjct  635  IMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDK  694

Query  713  VLPNIDVEGEA  723
            +LP IDVEG A
Sbjct  695  LLPTIDVEGAA  705

63) SBI_06238 in NC_016582


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  241 bits (900),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 297/695 (43%), Positives = 473/695 (69%), Gaps = 28/695 (4%)

Query  1    MPGIESQKAFDLMEQRFPGAKADGASARIVFVAPDGQKITAAGNRAVIEKAVGEAADGTQ  60
            +PG +S +A+  +E  FP +    +S ++V V + G ++T  +    +  A+ +A     
Sbjct  47   VPGTDSSRALSTLESEFPTTGEATTSLQLV-VQSSGGRVTDDAPS--LTSALEQARVIPG  103

Query  61   VAGAVGPFQAK--AVSKDASTAYATVTYKVKADDLTDASKKTLEDAIGQARDAGLTVEVG  118
            V +  +P+++   ++S D++TA A VT     ++ +D     L+   +  RD G++ E+G
Sbjct  104  VLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIG  163

Query  119  GSalatqpaaggaaegigiaiaaVVLLVTFGSLAAAGLPLLTAIVGVGismasilalgsa  178
            GS  ++ P   G++E +G  +A +VLL+TFGSL AAG  +L A+VGVG+++ +ILA+++ 
Sbjct  164  GSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAI  223

Query  179  lglsmttgtlatmlglACGIDYAVFVVSRYREERAKghapqeaaglaagtagsaVVFAGL  238
              ++  T  LA MLGLA GIDY +FV+SR+R E   G+  Q+A G A++TAGS+VVFAG 
Sbjct  224  APIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGA  283

Query  239  TVVIALAGLSVVGIPMLTKMglaaagavgvavvialtlvPALLGFW-PNAVLSRSARKRG  297
            TV+IAL GL+VVGIP L  MG+AAA AV+VAV+++LTL+PALL+ W     L+R  R   
Sbjct  284  TVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLS-WMGRRALGRRERAST  342

Query  298  RAEVAGQNNGGSRWARF----VLRRpvpvllasvaglgalavpvMDLQ--LGMPGDEVKP  351
            R+       G++RW+      VLRRPV   +A V+GL+ +A+P++++Q  L +PG+E   
Sbjct  343  RS-----AGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGE--D  395

Query  352  TSTTERRAYDALAHGFGAGFNGPLSIVVDAKGAENPKAAVKTIEQKIGATEGVVSVSPAR  411
              +T+R AY ++A++FG+G ++PL ++V  ++  ++ +AV T+   +G+   V +VSP+ 
Sbjct  396  PDSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNVATVSPGP  453

Query  412  FNPAGDTAVFSAVPATGPSDKKTKDIVHTIRDERPATESATGASFEVTGTTAVNIDVAQK  471
             ++ G TA+++ ++ +GP D  T  +V+ IR     + +  ++S +VTG+TA+ +D  ++
Sbjct  454  VSADGSTAMLTVIAESGPLDTATTSLVRDIR-----ALGDDSTSVQVTGSTAIALDSDEQ  508

Query  472  VQDALIPYlivvvglaillllvvfrsvlvPIKaafgfllsvlaalgavvavfQWGWGAGL  531
            ++ ALI+Y+ ++VGL++LLL+++FRS LVP+ A+ GFLLS+ AALG+ VAVFQWGW   +
Sbjct  509  LRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPI  568

Query  532  LGVEQTGPIMSLMPSFLVGIVFGLAMDYEVFLVSRMREAYVHGDRPGQAVVSGFRYSarv  591
            +   Q  P++SL+P ++ GI+FGLAMDY+VFLVSR++EA  HG  P +AV +GF+ SA V
Sbjct  569  VQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPV  628

Query  592  vvaaalimmavFSGFVGAGESMIKMIGFGLATAVLFDAFVVRMALVPAVLALLGKAAWWM  651
            VVAAA IM AVF GF  +  S++  I+++LA +VL DA++VRM LVPA+L+LLG++AWW+
Sbjct  629  VVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWI  688

Query  652  PRWLDRLLPRVDVEGEAL-SRRSSTAPAPVDTTEL  685
            PRWLD+LLP +DVEG A+   R  +AP  + +T +
Sbjct  689  PRWLDKLLPTIDVEGAAFDDDRREAAPNELASTRM  723

64) Sfla_1192 in NC_016114


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  240 bits (897),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 314/699 (45%), Positives = 480/699 (69%), Gaps = 34/699 (4%)

Query  41   TTSKFSIPGTESQKALDSLAREFPQASGATGSI-VVAAPEGAKLT--PQAVAPVTEEASK  97
            +++ F +PGT+S +AL +L  EFP ++ AT S+ +V  + G+++T  + ++++  E+A  
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARV  100

Query  98   VPGVLAAVDPF--ASKAVSRDGRYALVQVQFESGVDGITDSQREAFSKAGESVPD-LR--  152
            +PGVLA  DP+  A  ++S DG  A+ QV     V++I + Q +  +   ++V+  LR  
Sbjct  101  IPGVLAVTDPLDPARPSISADGATAIAQV----TVGDIDEEQADEVTSELDAVAAGLRDQ  156

Query  153  ---VEHGGEIMRGVPEV-GSTEIIGvavaalvlvlTFGSLVAAGMTllnalvgvaagmag  208
                E GG +  +VPE+ G+TE++G  VA LVL+LTFGSLVAAG  +L ALVGV+ G+ G
Sbjct  157  GMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLG  216

Query  209  lfalSSTVELTSTAPILALMLGLAVGIDYALFIMSRYRHYLaegmdgeeaagraagtags  268
            ++A+S+   + S +PILA+MLGLAVGIDY LF++SR+R  L  G   ++A GRA++TAGS
Sbjct  217  ILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGS  276

Query  269  aVVFAGATVVIALAGLTVAGVPFltvmglaaaatvalavlvsltllpavlGFAGERVLPR  328
            +VVFAGATV+IAL GLTV G+PFL  MG+AAA +VA+AVL+SLTLLPA+L+  G R L R
Sbjct  277  SVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR  336

Query  329  KLRAKDRARTQAPAPAEAGFGFRWG--RIvarlrvpvlvlgvaglgalalpvQ--DMRLA  384
            + RA  R+   +P         RW   +I A LR PV+       G   +++   +M+ +
Sbjct  337  RERASTRSAGGSP---------RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTS  387

Query  385  LPDASTEAVGSPNREAYDLTTEGFGEGFNGRLVAVVAGDstkatasaaeetatIIGGTDG  444
            L  ++ E  +S +R AY   +++FG G ++ LV +V +DS  A+A  +  T   +G+   
Sbjct  388  LVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTE--LGSLPN  445

Query  445  VLAVAAPQMNEAGTTALLAVIPETGPTDATTEDTVNEIRDRVKGVEGVAISLTGATAVGI  504
            V +V++  ++  G+TA+L+VI+E+GP D++T   V +IR    G ++ ++ +TG+TA+++
Sbjct  446  VATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRA--LGDDSTSVQVTGSTAIAL  503

Query  505  DVSEKlagalpvylllvvglsvlllmlvfrsvlvPLKAALGFLLTIGATFGITVAIFQEG  564
            D  E+L +AL  Y+ L+VGLS LLL+L+FRS LVPL A+ GFLL++GA++G TVA+FQ G
Sbjct  504  DSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWG  563

Query  565  HLASWVGLDTSGPLVSflpilligilfglAMDYEVFLVSRMREDFVHGADARESVVSGVG  624
             L + V    + PL+S+LPI++ GILFGLAMDY+VFLVSR++E   HG+ +RE+V +G  
Sbjct  564  WLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQ  623

Query  625  HNarvvtaaavimtavFGGFVFMPDPIIKSIGFALAIGVLIDAFVVRMAIVPAVMHLLGR  684
            ++A VV AAA IM+AVF GF + P +++ SI++ALA+GVL DA++VRM +VPA++ LLGR
Sbjct  624  QSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGR  683

Query  685  AAWWLPRPVDRILPDLDIEGERLQREIPVQREPAELVKT  723
            +AWW+PR +D++LP +D+EG  ++ +   +  P EL  T
Sbjct  684  SAWWIPRWLDKLLPTIDVEGAAFDDDRR-EAAPNELAST  721

65) Sare_4042 in NC_009953


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  240 bits (894),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 299/697 (43%), Positives = 466/697 (67%), Gaps = 25/697 (3%)

Query  41   TSSDFTMPGTESQLAKDLLEEQFPAASGATGTIALKAPQPGLLG-TPQGqavatevtqea  99
            +S++F +PGT+S  A   LE +FP+++ AT ++ L    +G  G   ++ +  T   ++A
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSG--GRVTDDAPSLTSALEQA  98

Query  100  atLPGVVGAVDPLTA--QAISPDGQYGLIQVQFAEGADKVTDEQREAYEQVGAAAEAQGW  157
              +PGV++  DPL +   +IS+DG  ++ QV  ++  +  +DE     + V+A+   QG 
Sbjct  99   RVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGM  158

Query  158  QVAPGGEVLNSEPAA-GSSEvigvaiaaivlvvTFGSLVAAGMTMLNALIGVGVGMAGLY  216
                GG + ++ P   G++E++G  +A +VL++TFGSLVAAG  ML AL+GVGVG+ G+ 
Sbjct  159  AAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGIL  218

Query  217  ALSGTVELTSTAPILALMLGLAVGIDYSLFITSRYRQNLLDGLPPDEAVGRAVGTAGSAV  276
            A+S+   + S +PILA+MLGLAVGIDY LF+ SR+R +L  G   ++A+GRA +TAGS+V
Sbjct  219  AFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSV  278

Query  277  LFAGATVVIALTGLAVVNIPFLtvmglaaagtvvvavlvaltlapallgFAGRRVLRREQ  336
            +FAGATV+IAL GL+VV IPFL  MG+AAA +V VAVL++LTL PALL+  GRR L R +
Sbjct  279  VFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRE  338

Query  337  RHRYGIasaesetaeseaaalteDRSTFGFRWARLVIRFRVPVIlvallglgvlalPTSD  396
            R                ++  + + +     W   V+R  V   +  + GL+V+ALP  +
Sbjct  339  R---------------ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLG  383

Query  397  MRLALPDQGTAPVGSPARVSNDLISEGFGPGFTGRLAVVVAGDSPEATAAAVPQVTALVQ  456
            M+ +L   G    +S  R +   ++++FGPG  + L V+V +DS   +A+AV  V++ + 
Sbjct  384  MQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDS--DAASAVETVSTELG  441

Query  457  RTDNVLAVAPPQLSPDGRTALIGVVPETGPTDPATETVVDDIRGSVGGIQGADVLLTGVT  516
               NV +V+P  +S+DG TA++ V++E+GP D AT ++V DIR+   G +++ V +TG T
Sbjct  442  SLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL--GDDSTSVQVTGST  499

Query  517  AIGIDVSEKLADALPvylllvvglsivllmlvFRSLLVPVKAALGFLLTVAATFGLTVAV  576
            AI++D  E+L  AL  Y+ L+VGLS++LL+L+FRS+LVP+ A+ GFLL+++A++G TVAV
Sbjct  500  AIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAV  559

Query  577  FQQGHLADLVGLDTpgplisflpilligilfglAMDYEVFLVSRMREDFVHGDTAQQATV  636
            FQ G L  +V      PL+S+LPI++ GILFGLAMDY+VFLVSR++E   HG ++++A  
Sbjct  560  FQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVR  619

Query  637  NGMGHGARVVTAAALIMISVFGGFIFMDDPVIKSMGFALAVGVAIDAFVVRMTIVPAVMS  696
             G  ++A VV AAA IM +VF GF +   +++ S+++ALAVGV  DA++VRM +VPA+++
Sbjct  620  AGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLT  679

Query  697  LLGDAGWWLPRWLNRVLPNVDVEGEGLRNHLAEQEPA  733
            LLG ++WW+PRWL+++LP +DVEG ++ ++  E  P 
Sbjct  680  LLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPN  716

66) Sked_06730 in NC_013521


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  238 bits (888),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 307/747 (42%), Positives = 501/747 (68%), Gaps = 44/747 (5%)

Query  25   MASFLYRVGHFSFTRRWIvlvtwllvlaaagagalasgiklTEQLTIPGVESATAQTILE  84
            M+++LYR+G +S   RW V+ +WLLVL  A++ AL++    +  + +PG +S+ A + LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  85   ERFgeaasgvgsgtggaaaagadaEQPASTRFVVQAPEGTNLVEDGSLQTVLGALAPVGE  144
              F  ++                 E  +S ++VVQ++ G    +  SL + L     +  
Sbjct  61   SEFPTTG-----------------EATTSLQLVVQSSGGRVTDDAPSLTSALEQARVI--  101

Query  145  QPQVASVSDPTQTG--TVAPDGGAVYVDIQFTVPSDDVSDATLDTIATAETTLSDDGFTV  202
             P V +V+DP + +  ++++DG++   ++      ++ +D     + +  + L D+G + 
Sbjct  102  -PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAA  160

Query  203  AVAGGPYTEPLEFLGPTElvgvvvalvvllvTFGSLLAAGMPilsallgvgigvagvlsl  262
             ++G+  +   E+LGPTELVG +VA++VLL+TFGSL+AAG  +L+AL+GVG+GV G+L++
Sbjct  161  EIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAF  220

Query  263  sAVVTISSatltlalmlglaVGIDYALFLLSRHRQQLAEGVAPAESAGRAVGTAGSAVVF  322
            SA+  I+S T  LA+MLGLAVGIDY LF+LSR R +L  G    ++ GRA +TAGS+VVF
Sbjct  221  SAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVF  280

Query  323  AGATVVIALAGLSVTGIPFLATMGlaaaatvaiavliaitllpaiMGFAGERLVPrgraa  382
            AGATV+IAL GL+V GIPFL+ MG+AAA +VA+AVL+++TLLPA+++  G R + R   A
Sbjct  281  AGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERA  340

Query  383  araqrSSKA--ENRWGSFVTTHpvwtlvvgvlllgtvalpaTQMRLGLPDAGQEPASSHD  440
            +    ++ +     W + V  +PV +    V  L+ VALP   M+ +L  +G E + S +
Sbjct  341  STRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQ  400

Query  441  RQAYDLLAEGFGPGINGPLVVLIDAESDPSVLPTAMEQMTTALDgvanvaavapatpnga  500
            R AY  +A++FGPG ++PLVVL+ ++SD++   +A+E ++T L++++N            
Sbjct  401  RAAYTTVADAFGPGAQDPLVVLVRSDSDAA---SAVETVSTELGSLPN------------  445

Query  501  IEGMEAPEGTPQADAAIITVIPTTGPNAEETADVVHDIRDVRGAVEEatgatvwvtgaaa  560
            +  + +   ++++ +A++TVI+ +GP    T+ +V+DIR +        +++V VTG++A
Sbjct  446  VATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTA  500

Query  561  aNIDVTEKLADALPlflaivvglaivlllvafRSLLVPltavlgflltvaaafgattaVY  620
              +D  E+L  AL  ++A++VGL+++LL++ FRS+LVPL A  GFLL+++AA+G+T AV+
Sbjct  501  IALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVF  560

Query  621  QWGWLADVFSVATPAPLLSFMPVLLVGVLFGLAMDYQVFLVSRMREDFTHGADAMRAVRS  680
            QWGWL  +   +   PLLS++P+++ G+LFGLAMDYQVFLVSR++E   HG+ +  AVR+
Sbjct  561  QWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRA  620

Query  681  GYAHGarvvlaaalimiavfaSFVFSGNTTIGPIAFALGFGIAVDALVVRMTMIPAVMAL  740
            G+ ++A VV+AAA IM AVF +F +S ++ +G+IA+AL+ G+  DAL+VRM ++PA+++L
Sbjct  621  GFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTL  680

Query  741  LGRSAWWLPRWLDKALPNVDIEGASLE  767
            LGRSAWW+PRWLDK LP +D+EGA+++
Sbjct  681  LGRSAWWIPRWLDKLLPTIDVEGAAFD  707

67) Strvi_5985 in NC_015957


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  238 bits (886),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 291/690 (43%), Positives = 479/690 (70%), Gaps = 21/690 (3%)

Query  47   LPGTESQRAFDLLGEKFPAANAEGASARVVLRAPEGQKISSPGNLTAVQSTLKDLKDSSS  106
            +PGT+S RA+  L   FP++    +S ++V++++ G+    + +LT   S+L + +  ++
Sbjct  47   VPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLT---SALEQARVIPG  103

Query  107  HVGQVSDPF--ATKTLSADgttayaqvtytvagaDLTDADHTRIDDALDAGRDQGLTVEA  164
             ++ V+DP+  A  ++SADG+TA AQVT    + + +D   + +D    + RDQG++ E 
Sbjct  104  VLA-VTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEI  162

Query  165  SGD-ALAPPEGSHSAELIGFALAAVIMAMTFGSLIAAGLPLITAVVGVGMSIAAITALSS  223
            +G  + A PE   ++EL+G  +A +++ +TFGSL+AAG  ++ A+VGVG+++ +I A+S+
Sbjct  163  GGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSA  222

Query  224  TFDLNSNTSALASMLGIAVGIDYALFIVSRYRSERAEGHDakeaaarangtagsaVVFAG  283
               + S T+ LA MLG+AVGIDY LF++SR+R+E   G+  ++A +RA +TAGS+VVFAG
Sbjct  223  IAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAG  282

Query  284  MTVVIALAGLAVVNlpmltamglaaagavvvavlvavtlvpallGFASERVLGKARKKAT  343
             TV+IAL GL+VV +P L  MG+AAA AV VAVL+++TL+PALL+  + R LG+  + +T
Sbjct  283  ATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAST  342

Query  344  HTPTDAETAKATIGKRWITYvlrkpvkvlvlavvalgviavpaTQLKLGLPDDGSKPASS  403
            +++ ++    +T    WI  VLR+PV      V +L+V+A+P   ++ +L   G+  + S
Sbjct  343  RSAGGSPRWTTT----WIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDS  398

Query  404  TQRKAYDTLSDSFGPGFNGPLTVTVDDQTPKTartaaadmakaiaDLPDVASVSPAAFNQ  463
            TQR AY T++D+FGPG ++PL V V  ++  ++   +     +   LP+VA+VSP++ + 
Sbjct  399  TQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELG--SLPNVATVSPGPVSA  456

Query  464  ASDTAIITVIPKSGPSGDATKELVGDIRSLAADTGSATGARSMVTGTTALNIDISDKFSA  523
             + TA++TVI+ SGP + AT  LV DIR+L+ D+ S       VTG+TA+ +D  +++ +
Sbjct  457  DGSTAMLTVIAESGPLDTATTSLVRDIRALGDDSTSVQ-----VTGSTAIALDSDEQLRS  511

Query  524  AIMPYlalvvglaflvlilvfRSILVPVKaalgfllsvlaslgalvavfQWGWLKDLVGL  583
            A+++Y+AL+VGL+FL+L+L+FRS+LVP+ A+ GFLLS+ A+LG+ VAVFQWGWL  +V  
Sbjct  512  ALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQA  571

Query  584  EQAGPIMSLMPILLVGIVFGLAMDYQVFLVTRMREAYVRGADARTAIETGFKHSAKVVTA  643
             Q+ P++SL+PI++ GI+FGLAMDYQVFLV+R++EA  +G+ +R A+ +GF++SA VV A
Sbjct  572  PQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVA  631

Query  644  AALIMISVFAGFVGGDETMIKALGFGLAIAVAFDAFVVRMTIVPAALALLGERAWTLPAW  703
            AA IM +VF GF  +  +++ +++++LA++V  DA++VRM +VPA L+LLG  AW +P W
Sbjct  632  AAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRW  691

Query  704  IDRILPNVDIEGEKLA---RRTPDEDLQDK  730
            +D++LP +D+EG  +    R ++ ++L   
Sbjct  692  LDKLLPTIDVEGAAFDDDRREAAPNELAST  721

68) Pjdr2_5263 in NC_012914


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  235 bits (875),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 240/571 (43%), Positives = 385/571 (68%), Gaps = 28/571 (4%)

Query  225  IGATEGIGIVVAAVVLFITLGSVVAAGLPLVTALLGVGISVGGAYSLSKFIPMTDITPAL  284
            +G+TE +G +VA +VL++T+GS+VAAG  ++ AL+GVG++V G  ++S + P+  +TP L
Sbjct  174  LGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPIL  233

Query  285  AMMVGLAVGIDYSLFIVNRQRRMILDQGLSAREAASRAVGTAGSAVFFAGLTVIIALCGM  344
            A+M+GLAVGIDY LF+++R R   L  G   ++A +RA +TAGS+V FAG TVIIAL G+
Sbjct  234  AVMLGLAVGIDYCLFVLSRFR-AELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGL  292

Query  345  VVMNIDFLTAMALVAAASVFINvlvaltllpallglvgERIVSEKARKKNNEQAGVSRQG  404
             V+ I FL  M++ AA +V + VL++LTLLPALL+ +G R ++ + R      +G +R  
Sbjct  293  TVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSPRWT  352

Query  405  TAHRWANgvvrrrwlvivgvivilgaaaIP--AAQMKLGMPSGDTANLDTPTRQSYDAIS  462
            T+  W  +V+RR  +   +V+  L+  A+P  + Q  L +P+G+ +  D+  R +Y +++
Sbjct  353  TT--WIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDP--DSTQRAAYTTVA  408

Query  463  AGFGEGYNSPLLLV----AEPASSGEKITPEVLGKLVQDIQQHEDVALVNPMGINQTGDI  518
             +FG G + PL+++    +++AS+ E ++ E LG L        +VA V+P  ++  G  
Sbjct  409  DAFGPGAQDPLVVLVRSDSDAASAVETVSTE-LGSL-------PNVATVSPGPVSADGST  460

Query  519  GIISVIPKSGPTDKATNDLVQDLRDHNSSISQSNKVTLGVTGFTAINIDMSAKLAEVFPl  578
            ++++VI+ SGP D AT  LV+D+R         +  ++ VTG TAI +D   +L   +  
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALGD-----DSTSVQVTGSTAIALDSDEQLRSALIA  515

Query  579  yigiililsliilllVFRSIIVPVKATIGFLLSILATFGITTAVFQWGWLHDLFGFDTGG  638
            Y+++I+ LS+++L+L+FRS++VP+ AT GFLLS+ A++G T AVFQWGWL+ +     G 
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  639  PLLSFMPIMVSGILYGLAMDYQVFLVSSMREAYVHGHKGSSSVVEGYQQasrvvvaaavi  698
            PLLS++PI+V+GIL+GLAMDYQVFLVS ++EA  HG     +V  G+QQ++ VVVAAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  699  mvsvfaGFILTEDIMLKQIGFALTIGILIDAFFVRMALVPAIMAVFGDKAWGMPKWLDRI  758
            M +VF GF L+   ++  I++AL++G+L DA++VRM LVPA+++++G  AW +P+WLD++
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  759  LPNLDVEGDKLIAELNKSSNPNGHKELKKAK  789
            LP +DVEG    A ++      + +EL  ++
Sbjct  696  LPTIDVEG----AAFDDDRREAAPNELASTR  722


 Score = 45.3 bits (152),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 27/126 (22%), Positives = 77/126 (62%), Gaps = 7/126 (5%)

Query  1    MSTFLYKIGKTAYNKPWHFIIAWIAILGVVGALIGINGIH-TSSEMKIKGTEAQKVLDQL  59
            MS++LY++G  +    W  + +W+ +L +++A ++++G++ +S+   + GT++ + L  L
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVL-LIAAGVALSGMRFSSAGFDVPGTDSSRALSTL  59

Query  60   AKELPEASGGQASV-VFTAPKGERL--DTPDRIAAV--TKAINDVYSIEYVINPAKMAQA  114
              E+P ++ + +S+ +   + G R+  D+P   +A+  ++ I +V ++   ++PA+ + +
Sbjct  60   ESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSIS  119

Query  115  SSATAE  120
            + +++ 
Sbjct  120  ADGATA  125

69) AAur_1412 in NC_008711


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  234 bits (874),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 273/624 (44%), Positives = 437/624 (71%), Gaps = 23/624 (3%)

Query  216  VSSDNKAAIAQVQFKTSINAVDPAVREEVQEIVHGVSSAGVTAYASKEITEDVSEifgva  275
            +S+D  +AIAQV      +     V  E++ +  G+   G++A  +  +T  V+EI+G +
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  276  eivgvavaalvlilmlgTLIAAGLPLVMALIGVAVGVGGTFALTSVIDMSSISPMLALML  335
            E+VG  VA LVL+L +G+L+AAG  ++ AL+GV+VGV G +A++++  ++S++P+LA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  336  GLAVGIDYSLFIVNRHRTQLLAGMDGEESAALATGTSGNAVLFAGLTVIIALAALVVPGL  395
            GLAVGIDY LF+++R R++L +G   +++ + AT+T+G++V+FAG TVIIAL +L V G+
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  396  PFlavmgvaaaatvgvavvvaltltpavlalIGRRLISKRAWAKAEKHNAEPGHEAADRE  455
            PFL+ MG+AAA +V+VAV+++LTL PA+L+ +GRR +++R +A +    + P        
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP--------  349

Query  456  LEEKRSSGGWGGLVTRRPWvalvasvvllgalalpaSQLRLALPDGGSEPVDSQAFKAYD  515
                R +  W G V RRP +A  A V  L+ +ALP   ++ +L   G+E  DS    AY 
Sbjct  350  ----RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  516  LTRSSFGEGMTGPIIVVGEFPEGLSENDAKNKQFDVADQLRSVENVIAAVPIALSDDRRT  575
                +FG G  +P++V+       S++DA +    V+ +L S+ NV +  P ++S D  T
Sbjct  406  TVADAFGPGAQDPLVVLVR-----SDSDAASAVETVSTELGSLPNVATVSPGPVSADGST  460

Query  576  AVFQVIPKEGPASAGTVQVVSDLRAKGTGINEDLGVKIGLTGQTAGNIDVSEKLGAALPP  635
            A++ VI+  GP  ++T  +V D+RA G   ++  +V++  TG TA  +D  E+L +AL +
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALG---DDSTSVQV--TGSTAIALDSDEQLRSALIA  515

Query  636  YLAIVVGlsllllllVFRSIVVPllatggfllslaaafgavvavYQWGWLGGIFDVANPG  695
            Y+A++VGLS+LLL+L+FRS++VPL+ATGGFLLSL+AA+G+ VAV+QWGWL+ I + ++  
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  696  AVLSFLPIILIGVLFGLAMDYQVFITSGMRESFMHGESAKHAVRSGFSHaaavvtaaaII  755
            ++LS+LPII+ G+LFGLAMDYQVF+ S ++E+  HG S+++AVR+GF ++A+VV AAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  756  MVSVFSGFIFSHLTMVRPLGFAMAFGVLIDAFVVRMTIVPAVMYLLGEKAWWLPKWLERI  815
            M +VF GF +S  ++V ++++A+A GVL DA++VRM +VPA++ LLG  AWW+P+WL+++
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  816  LPDVDVEGAKLERSDRSKAGSEEL  839
            LP +DVEGA ++  DR  A+++EL
Sbjct  696  LPTIDVEGAAFD-DDRREAAPNEL  718


 Score = 44.2 bits (148),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 32/112 (29%), Positives = 66/112 (59%), Gaps = 3/112 (2%)

Query  1    MASFLYRLGKFSYRRRWLVISIWLavmvavggsaaaFHGTMSNNFTIPGTETQQMADKLK  60
            M+++LYRLG +S R RW V++ WL V++  +G A +     S  F +PGT++ +    L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EALPDSSGGSASVVFDAGDAGFDQAKKDA--VAAALTKLEAMPDVQGTVNPF  110
              +P ++ +++S+ +    +G ++   DA  +++AL +   +P+V +  +P+
Sbjct  61   SEFPTTGEATTSLQLVVQSSG-GRVTDDAPSLTSALEQARVIPGVLAVTDPL  111

70) ydfJ in NC_018531


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  234 bits (874),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 272/624 (44%), Positives = 435/624 (70%), Gaps = 23/624 (3%)

Query  216  VSSDNKAAIAQVQFKTSINAVDPAVREEVQEIVHGVSSAGVTAYASKEITEDVSEifgva  275
            +S+D  +AIAQV      +     V  E++ +  G+   G++A  +  +T  V+EI+G +
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  276  eivgvavaalvlilmlgTLIAAGLPLVMALIGVAVGVGGTFALTSVIDMSSISPMLALML  335
            E+VG  VA LVL+L +G+L+AAG  ++ AL+GV+VGV G +A++++  ++S++P+LA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  336  GLAVGIDYSLFIVNRHRTQLLAGMDGEESAALATGTSGNAVLFAGLTVIIALAALVVPGL  395
            GLAVGIDY LF+++R R++L +G   +++ + AT+T+G++V+FAG TVIIAL +L V G+
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  396  PFlavmgvaaaatvgvavvvaltltpavlalIGRRLISKRAWAKAEKHNAEPGHEAADRE  455
            PFL+ MG+AAA +V+VAV+++LTL PA+L+ +GRR +++R +A +    + P        
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRSAGGSP--------  349

Query  456  LEEKRSSGGWGGLVTRRPWvalvasvvllgalalpaSQLRLALPDGGSEPVDSQAFKAYD  515
                R +  W G V RRP +A  A V  L+ +ALP   ++ +L   G+E  DS    AY 
Sbjct  350  ----RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  516  LTRSSFGEGMTGPIIVVGEFPEGLSENDAKNKQFDVADQLRSVENVIAAVPIALSDDRRT  575
                +FG G  +P++V+       S++DA +    V+ +L S+ NV +  P ++S D  T
Sbjct  406  TVADAFGPGAQDPLVVLVR-----SDSDAASAVETVSTELGSLPNVATVSPGPVSADGST  460

Query  576  AVFQVIPKEGPASAGTVQVVSDLRAKGTGISEDLGVKIGLTGQTAGNIDVSEKLGAALPP  635
            A++ VI+  GP  ++T  +V D+RA G +     +  + +TG TA  +D  E+L +AL +
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIA  515

Query  636  YLAIVVGlsllllllVFRSIVVPllatggfllslaaafgavvavYQWGWLGGIFDVANPG  695
            Y+A++VGLS+LLL+L+FRS++VPL+ATGGFLLSL+AA+G+ VAV+QWGWL+ I + ++  
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  696  AVLSFLPIILIGVLFGLAMDYQVFITSGMRESFMHGESAKHAVRSGFSHaaavvtaaaII  755
            ++LS+LPII+ G+LFGLAMDYQVF+ S ++E+  HG S+++AVR+GF ++A+VV AAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  756  MVSVFSGFIFSHLTMVRPLGFAMAFGVLIDAFVVRMTIVPAVMYLLGEKAWWLPKWLERI  815
            M +VF GF +S  ++V ++++A+A GVL DA++VRM +VPA++ LLG  AWW+P+WL+++
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  816  LPDVDVEGAKLERSDRSKAGSEEL  839
            LP +DVEGA ++  DR  A+++EL
Sbjct  696  LPTIDVEGAAFD-DDRREAAPNEL  718


 Score = 44.2 bits (148),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 32/112 (29%), Positives = 66/112 (59%), Gaps = 3/112 (2%)

Query  1    MASFLYRLGKFSYRRRWLVISIWLavmvavggsaaaFHGTMSNNFTIPGTETQQMADKLK  60
            M+++LYRLG +S R RW V++ WL V++  +G A +     S  F +PGT++ +    L 
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   EALPDSSGGSASVVFDAGDAGFDQAKKDA--VAAALTKLEAMPDVQGTVNPF  110
              +P ++ +++S+ +    +G ++   DA  +++AL +   +P+V +  +P+
Sbjct  61   SEFPTTGEATTSLQLVVQSSG-GRVTDDAPSLTSALEQARVIPGVLAVTDPL  111

71) Franean1_3392 in NC_009921


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  230 bits (859),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 290/691 (42%), Positives = 467/691 (68%), Gaps = 34/691 (4%)

Query  22   FSMPGTESQRAFDLLDERFPGTGADGAVARIVFVAPPGQTLTTPENrttvervvaeaaaS  81
            F +PGT+S RA+  L+  FP TG   +  ++V  ++ G+     ++  ++   + +A   
Sbjct  45   FDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRV---TDDAPSLTSALEQARVI  101

Query  82   PQVANAVNPFQSG--avstdaatayatvsytaISDDLTDATKNSLQGAVTDGQTAGLTVE  139
            P V    +P++++  ++S+D+ATA A V+   I ++ +D   + L++  ++ +  G++ E
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  140  LGGDALTTRPGAGGVTEAVGiaiaalvlliTFGSLAAAGLPLLTAIVSVGVGIASImala  199
            +GG   ++ P   G TE VG  +A LVLL+TFGSL AAG  +L A+V+VGVG+ +I+A++
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  200  stlglssttstlammlglaVGIDYAVFIVSRYREEHARGLEPQDatavatgtagssvvFA  259
            +   ++S T+ LA+MLGLAVGIDY +F++SR+R E   G   QDA + AT+TAGSSVVFA
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  260  GLTVVIALAGLFIVGVPTLTKMglaaagtvgiavgvaltLVPALLGFFPRAVLPrstrks  319
            G TV+IAL GL +VG+P L  MG+AAA +V++AV ++LTL+PALL+   R  L       
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRAL-------  334

Query  320  ttrsttsrfarratrktEHRGPNAGTRWANl----ilrrplpvlilsvlALGAIALPVLD  375
                           ++  R++ ++ RW+      +LRRP+   +  V +L+ +ALP+L+
Sbjct  335  -----------GRRERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLG  383

Query  376  LRLGTAGDEAKPTSTTERRAYDDLAAGFGPGFNGPLTIVVDATGSDNAQTAVTTITQKIS  435
            ++ +     +    +T+R AY  +A +FGPG ++PL ++V +    +A +AV T++  ++
Sbjct  384  MQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRS--DSDAASAVETVSTELG  441

Query  436  ATPGVVSASAARFNTAGDTAVFTAVPATGPSEAATKDLVHTIRAQRATVTAATGATFQVT  495
            + P V + S++  ++ G TA++T ++ +GP ++AT  LV+ IRA      +  +++ QVT
Sbjct  442  SLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVT  496

Query  496  GTTAVNIDIAQKVQDALIPYlaivvglafllllvlfrsvlvplKaalgfllsvlaalgav  555
            G+TA+ +D  ++++ ALI+Y+A++VGL+FLLL++LFRS LVPL A+ GFLLS+ AALG+ 
Sbjct  497  GSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGST  556

Query  556  vavfQWGWLAGLIGLHQTGPIMSMMPIFMVGIVFGLAMDYEVFLVARIREAHVHGENARD  615
            VAVFQWGWL  ++   Q  P++S++PI++ GI+FGLAMDY+VFLV+RI+EAH HG ++R+
Sbjct  557  VAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPRE  616

Query  616  AITSGFGYSarvvvaaalimmavfaGFIGTSEPIIKMIGFGLATAVLLDAFVVRMTIVPA  675
            A+ +GF  SA VVVAAA IM AVF GF  ++ +++  I+++LA +VL DA++VRM +VPA
Sbjct  617  AVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPA  676

Query  676  VLALLGEKAWWIPRHLDRVLPHIDVEGETLN  706
            +L+LLG  AWWIPR LD++LP IDVEG +++
Sbjct  677  LLTLLGRSAWWIPRWLDKLLPTIDVEGAAFD  707

72) Franean1_3729 in NC_009921


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  230 bits (857),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 292/691 (43%), Positives = 467/691 (68%), Gaps = 34/691 (4%)

Query  81   FSMPGTESQRAFDLLDERFPGTGADGAVARIVFVAPPGQTLTTPENrttvervvaeaaaS  140
            F +PGT+S RA+  L+  FP TG   +  ++V  ++ G+     ++  ++   + +A   
Sbjct  45   FDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRV---TDDAPSLTSALEQARVI  101

Query  141  PQVANAVNPFQSG--avstdaatayatvsytaISDDLTDATKNSLQGAVTDGQTAGLTVE  198
            P V    +P++++  ++S+D+ATA A V+   I ++ +D   + L++  ++ +  G++ E
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  199  LGGDALTTRPGAGGVTEAVGiaiaalvlliTFGSLAAAGLPLLTAIVSVGVGIASImala  258
            +GG   ++ P   G TE VG  +A LVLL+TFGSL AAG  +L A+V+VGVG+ +I+A++
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  259  stlglssttstlammlglaVGIDYAVFIVSRYREEHARGLEPQDatavatgtagssvvFA  318
            +   ++S T+ LA+MLGLAVGIDY +F++SR+R E   G   QDA + AT+TAGSSVVFA
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  319  GLTVVIALAGLFIVGVPTLTKMglaaagtvgiavgvaltLVPALLGFFPRAVLPrstrks  378
            G TV+IAL GL +VG+P L  MG+AAA +V++AV ++LTL+PALL+   R  L R  R  
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERA-  340

Query  379  ttrsttsrfarratkktEHRGPNAGTRWANl----ilrrplpvlilsvlALGAIALPVLD  434
                               R++ ++ RW+      +LRRP+   +  V +L+ +ALP+L+
Sbjct  341  -----------------STRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLG  383

Query  435  LRLGTAGDEAKPTSTTERRAYDDLAAGFGPGFNGPLTIVVDATGSDNAQTAVTTITQKIS  494
            ++ +     +    +T+R AY  +A +FGPG ++PL ++V +    +A +AV T++  ++
Sbjct  384  MQTSLVIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRS--DSDAASAVETVSTELG  441

Query  495  ATPGVVSASAARFNTAGDTAVFTAVPATGPSEAATKDLVHTIRAQRATVTAATGATFQVT  554
            + P V + S++  ++ G TA++T ++ +GP ++AT  LV+ IRA      +  +++ QVT
Sbjct  442  SLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVT  496

Query  555  GTTAVNIDIAQKVQDALIPYlaivvglafllllvlfrsvlvplKaalgfllsvlaalgav  614
            G+TA+ +D  ++++ ALI+Y+A++VGL+FLLL++LFRS LVPL A+ GFLLS+ AALG+ 
Sbjct  497  GSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGST  556

Query  615  vavfQWGWLAGLIGLHQTGPIMSMMPIFMVGIVFGLAMDYEVFLVARIREAHVHGENARD  674
            VAVFQWGWL  ++   Q  P++S++PI++ GI+FGLAMDY+VFLV+RI+EAH HG ++R+
Sbjct  557  VAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPRE  616

Query  675  AITSGFGYSarvvvaaalimmavfaGFIGTSEPIIKMIGFGLATAVLLDAFVVRMTIVPA  734
            A+ +GF  SA VVVAAA IM AVF GF  ++ +++  I+++LA +VL DA++VRM +VPA
Sbjct  617  AVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPA  676

Query  735  VLALLGEKAWWIPRHLDRVLPHIDVEGETLN  765
            +L+LLG  AWWIPR LD++LP IDVEG +++
Sbjct  677  LLTLLGRSAWWIPRWLDKLLPTIDVEGAAFD  707

73) BN6_22620 in NC_019673


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  229 bits (855),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 316/683 (47%), Positives = 483/683 (71%), Gaps = 15/683 (2%)

Query  45   FSIPGQESTTALDKIKDEFGGGGATA---RVVLAPPAGQQVVTAENAARIAGLVERLGGL  101
            F +PG +S+ AL  +  EF   G ++   ++V+ +++G+    +++A+ +++ +E+   +
Sbjct  45   FDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGR---VTDDAPSLTSALEQARVI  101

Query  102  PGVTSASNPLDPKAPSVNADRDMVYSTVTYDAKVGEVTDAQRADLTDVVADAREGGWTAE  161
            PGV + ++PLDP  PS++AD     + VT +    E +D   ++L  V A+ R+ G +AE
Sbjct  102  PGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAE  161

Query  162  VTGEAMQAPPHvggvvevvgvvIALAILALTYGSLVMAGMNLLtaavgvgigtlgititt  221
            + G    A P++ G  E+VG ++A+ +L LT+GSLV AG N+L A VGVG+G LGI   +
Sbjct  162  IGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFS  221

Query  222  gFLELSSTTPILAAMLGLAVGIDYALFIINRYRQELRRGRDVGDAIgtavgtagsavvta  281
            ++  ++S TPILA MLGLAVGIDY LF+++R+R ELR GR V DAIG A +TAGS+VV A
Sbjct  222  AIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFA  281

Query  282  gltvvialaglavvgiPFLTQMgvaaagtivvavliaitlvpavlGFLGKRALPRKQRDA  341
            G TV+IAL GL+VVGIPFL +MG+AAA ++ VAVL+++TL+PA+L+ +G+RAL R++R +
Sbjct  282  GATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERAS  341

Query  342  TAEAHErgffrgw-vgtvvrrrvvalllavialgviavpvaSMQTTLVQTPPGNSTQARA  400
            T  A          +G+V+RR V+A +  V +L+V+A+P+ +MQT+LV  P G+  ++  
Sbjct  342  TRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLV-IPGGEDPDSTQ  400

Query  401  QQ---LLSDGFGEGFNGPLLVLFEGAGSVPAATEA-AKEFadvddvavvappapkpdGSA  456
            +     ++D+FG G ++PL+VL  + +  ++A E+ + E++ + +VA V+P +  +DGS+
Sbjct  401  RAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGST  460

Query  457  ALLTVIPESGPTSEATERLVADLRERLADtqgatayvtgatavSVDVAVALDEalpvyla  516
            A+LTVI+ESGP   AT  LV D+R  L+D   +     +++  ++D    L  AL  Y+A
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRA-LGDDSTSVQVTGSTAI-ALDSDEQLRSALIAYVA  518

Query  517  lvvglalillvlvfrsllvplIGVLGFLLTIGASLGATVAVFQWGWLTGAVNLDTTGPLI  576
            L+VGL+++LLVL+FRS+LVPLI+  GFLL++GA+LG+TVAVFQWGWL   V+     PL+
Sbjct  519  LIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLL  578

Query  577  SLTPILVIGILFGLAMDYQIFLVSRMheahhhgaapheSITTGFRQAAPVVVAAALIMFS  636
            SL PI+V GILFGLAMDYQ+FLVSR+HEAH+HG++P+E++ +GF+Q+APVVVAAA IM +
Sbjct  579  SLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAA  638

Query  637  VFAGFVPFGEPTIKSIAFALAIGILVDAFVVRMVLVPAALALLGEKAWWLPQWL-RWLPE  695
            VF GF     + + SIA+ALA+G+L DA++VRM+LVPA L+LLG  AWW+P+WL + LP 
Sbjct  639  VFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPT  698

Query  696  LDVEGAALEQPAHAERKAAIDAT  718
            +DVEGAA+++  +      + +T
Sbjct  699  IDVEGAAFDDDRREAAPNELAST  721

74) Tcur_3529 in NC_013510


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  227 bits (846),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 315/679 (47%), Positives = 472/679 (70%), Gaps = 20/679 (2%)

Query  42   SGQFSIPGTQAQQAFDLLDRRFPGSNADGATARVVFQARGDRKITDPAARAEVHKALAEL  101
            S+ F +PGT++ +A+  L+  FP +    ++ ++V Q+ G+R   D+++   +  AL + 
Sbjct  42   SAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPS---LTSALEQA  98

Query  102  QALPKVQAVTDPYRAK--AISPDASIAYIQVSYRVPSIELSEAD--RDALQEAVHKARGG  157
            + +P V AVTDP  +   +IS+D++ A  QV+  V  I+  +AD     L+      R+ 
Sbjct  99   RVIPGVLAVTDPLDPARPSISADGATAIAQVT--VGDIDEEQADEVTSELDAVAAGLRDQ  156

Query  158  GLTVEVGGDALSAAPeggatea-igvavaavvllvtFGSLIAAGLPlltalvgigvavaa  216
            G++ E+GG   SA PE  +    +G  VA +VLL+TFGSL+AAG  +L ALVG+GV+V +
Sbjct  157  GMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLG  216

Query  217  vtalSAPLELDDTTPILATMIGLAVGIDYALFIVSRHraelaegrdaaeaagratgtags  276
            + A+SA   ++  TPILA M+GLAVGIDY LF++SR RAEL  GR   +A GRAT+TAGS
Sbjct  217  ILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGS  276

Query  277  aVVFagltvvialaglavvgiPLLTKMGlaaaaavvvavlvaltlipallGFAGDKVLPR  336
            +VVFAG TV+IAL GL+VVGIP+L  MG+AAA AV VAVL++LTL+PALL+  G + L R
Sbjct  277  SVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR  336

Query  337  SRRAKGARPEGDG--LGARWArlvlrfpvpvllvtvaalgviaIPAADMRLGLPDDGSQP  394
              RA  +R+ G++    + W   VLR PV   +  V++L+V+A+P  +M+ +L   G++ 
Sbjct  337  RERAS-TRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGED  395

Query  395  VSTTQRRAYDLLSKGFGPGFNGPLVTVVdaagakdpqgaaaRVAQQISGMPNVAAVLPPA  454
              +TQR AY  ++ +FGPG ++PLV +V + +   +   +  V+ +++++PNVA+V P +
Sbjct  396  PDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVET--VSTELGSLPNVATVSPGP  453

Query  455  FNRAGDTAMITVIPASGPADDRTEKLVRAIRGTAAEVKAATGARVLVTGQTAVAIDMSQK  514
             +  G TAM+TVI+ SGP D  T  LVR IR+ + +     ++ V VTG TA+A+D  ++
Sbjct  454  VSADGSTAMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQ  508

Query  515  LDDALIPYlalvvglaflllilvfrsllvplKaalgfllsvlaslgavvavfQWGWLKDP  574
            L  ALI+Y+AL+VGL+FLLL+L+FRS+LVPL A+ GFLLS+ A+LG+ VAVFQWGWL   
Sbjct  509  LRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPI  568

Query  575  LGVEVTGPVMSMMPIFLVGVVFGLAMDYEVFLVTRIREACVHGEDARQAVVTGFAHSARV  634
            +      P++S++PI++ G++FGLAMDY+VFLV+RI+EA  HG  +R+AV +GF +SA V
Sbjct  569  VQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPV  628

Query  635  VTAAAIIMISVFAGFIGFSDPMVKMIGFGLAIAVLFDAFAVRMTIVPAVLALLGKAAWWL  694
            V AAA IM +VF GF   + ++V  I+++LA++VL DA+ VRM +VPA+L+LLG++AWW+
Sbjct  629  VVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWI  688

Query  695  PRRLDKVLPEVDVEGEKLN  713
            PR+LDK+LP +DVEG  ++
Sbjct  689  PRWLDKLLPTIDVEGAAFD  707

75) Asphe3_12840 in NC_015145


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  227 bits (847),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 261/609 (43%), Positives = 424/609 (70%), Gaps = 22/609 (3%)

Query  216  VSEDGRAAVAQVQFNTSINGLSTEVRQQVQDIAHETSAAGVTAYASKEITEDISELFgaa  275
            +S DG +A+AQV      +  + EV  +++ +A      G++A  +  +T  ++E++G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  276  eiigiavaalvliiMLGTLIAAGLPLLMAIvgvgvgvgITFALSGLFDMSSISPMLALML  335
            E++G  VA LVL++ +G+L+AAG  +L A+VGVGVGV   +A+S++  ++S++P+LA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  336  GLAVGIDYSLFIVNRHRTQLLAGMDPEQSVARATGTSGNAVVFAGLTVIIALAALVVPGL  395
            GLAVGIDY LF+++R R++L +G   +++++RAT+T+G++VVFAG TVIIAL +L V G+
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  396  PFLtvmglaaagtvavavlvaITLTPAMlsligrriisrrAWAKADAHNAEPGHEAADAA  455
            PFL  MG+AAA +VAVAVL+++TL PA+L           +W  +    +   + ++ +A
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALL-----------SW-MGRRALGRRERASTRSA  345

Query  456  KDRERSTHGWGGLVTRHPIlallagvlllgtlalpatqlqlalpDGGSEPVDSEAYQAYD  515
             +  R T  W G V R+P++A +A V  L+ +ALP   +Q +L   G+E  DS    AY 
Sbjct  346  GGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYT  405

Query  516  LTARSFGEGVTGPVVAVGEFPAGLDEAQAQTLQYDVADKLRavdnvvaavpvaLSEDRRT  575
              A +FG G  +P+V +        +++A +    V+  L ++ NV +  P ++S D  T
Sbjct  406  TVADAFGPGAQDPLVVLVR-----SDSDAASAVETVSTELGSLPNVATVSPGPVSADGST  460

Query  576  AVFQVIPREGPASASTVQVVSELRGLNDEIQSEYGVAMGLTGQTAGNIDVSTKLGDALPP  635
            A++ VI+  GP  ++T  +V ++R+L D+     + ++ +TG TA  +D   +L  AL +
Sbjct  461  AMLTVIAESGPLDTATTSLVRDIRALGDD-----STSVQVTGSTAIALDSDEQLRSALIA  515

Query  636  YlaivvglslillllvfrsivvPllatggfllslaaafgavvavYQWGWLGNVFDVANPG  695
            Y+A++VGLS++LL+L+FRS++VPL+ATGGFLLSL+AA+G+ VAV+QWGWL+ + + ++  
Sbjct  516  YVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGN  575

Query  696  AVLSFLPIILIGVLFGLAMDYQVFIASGMREAYMHGSAAKEAVRVGFSHaaavvtaaaII  755
            ++LS+LPII+ G+LFGLAMDYQVF+ S ++EA  HG++++EAVR GF ++A+VV AAA I
Sbjct  576  PLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAI  635

Query  756  MVSVFAGFIFSHLTMVRPLGFAMAFGVLLDAFVVRMTIVPAVMYLLGKKSWWLPRWLDRI  815
            M +VF GF +S  ++V ++++A+A GVL DA++VRM +VPA++ LLG+ +WW+PRWLD++
Sbjct  636  MAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKL  695

Query  816  LPDVDVEGA  824
            LP +DVEGA
Sbjct  696  LPTIDVEGA  704


 Score = 51.6 bits (176),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 35/114 (31%), Positives = 68/114 (60%), Gaps = 7/114 (6%)

Query  1    MALFLYRLGKFSYRRRWLVISLWlaa---llavggaaaaFHGTLSNNFQIPGTETQRIAD  57
            M+ +LYRLG +S R RW V++ WL       +V+ ++  F    S  F++PGT++ R   
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFS---SAGFDVPGTDSSRALS  57

Query  58   KLKEELPSASGGTATI-VFEAPDGGFTAESRAAVTDALEKLETVPDVRGTVDPF  110
             L  E+P+++ +T+++ +   + GG  ++  +++T ALE+   +P+V +  DP+
Sbjct  58   TLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPL  111

76) Cwoe_0551 in NC_013739


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  221 bits (822),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 284/696 (41%), Positives = 462/696 (67%), Gaps = 28/696 (4%)

Query  42   NETFSTPGTESQQANDLLDKRLPDANGADGRI-VFAAPEGERLTGGERRAAIEAALADVA  100
            +  F  PGT+S +A   L+  +P +  A   + +   + G R+T  +  +++ +AL +  
Sbjct  42   SAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVT--DDAPSLTSALEQAR  99

Query  101  RAPEVIDTADPFAAG--LVSRDGRVALAQVTWGVPEDDVDAEMREDVagragaaard---  155
              P V+  +DP+ ++   +S DG  A+AQVT     +D+D E  ++V++  +A A +   
Sbjct  100  VIPGVLAVTDPLDPARPSISADGATAIAQVT----VGDIDEEQADEVTSELDAVAAGLRD  155

Query  156  agLQVefggaaapdgggeggiaelagvgvaalvlaITFGSLLAAGLPLLTAVIGVAISLM  215
             G+  E+GG+ ++      G +EL G  VA LVL +TFGSL+AAG  +L A++GV+++++
Sbjct  156  QGMAAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVL  215

Query  216  GITAMSGFVDLNSNVSTLAMMLGLAVGIDYALFILARHRAQLFTGMDPEEsagraagtag  275
            GI A S++  + S  + LA+MLGLAVGIDY LF+L+R RA+L +G   +++ GRA++TAG
Sbjct  216  GILAFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAG  275

Query  276  saVVFagatvvialaalavvNIPFLTSMGlaaaaavviavavaltlvpalFGFAGTRLL-  334
            S+VVFAGATV+IAL +L+VV IPFL  MG+AAA AV +AV ++LTL+PAL++  G R L 
Sbjct  276  SSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALG  335

Query  335  ---RGKNFETGERAQRPTlgarwaalvvrrrwpalalCTIALGACAIPMLDMRLGLPDDS  391
               R+    +G  +++ T               A+     +L+  A+P+L+M+ +L   +
Sbjct  336  RRERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVG---GLAVVALPLLGMQTSLVIPG  392

Query  392  TAAPQDTNRKAYDLLTDAFGPGFNGPLTIvvdageggaaaraadavavdlrrhddvESVA  451
               P+ T+R AY  ++DAFGPG ++PL ++V ++ ++A+A  + +  ++   +    +V+
Sbjct  393  GEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNV--ATVS  450

Query  452  RPLLNRAGDTAIISLVPRSGPSSEATKQLVEDVRDRADTLGPEVGADVLLTGTTAVNIDV  511
               ++  G TA++++++ SGP   AT  LV D+R    +LG + ++ V +TG+TA+ +D 
Sbjct  451  PGPVSADGSTAMLTVIAESGPLDTATTSLVRDIR----ALGDD-STSVQVTGSTAIALDS  505

Query  512  SQRLSDALLPYLAVIVGLAFLLLAIAFRSVLVPLTAVGGFLLTIgaafgavvavfqngfa  571
             ++L  AL++Y+A+IVGL+FLLL + FRS LVPL A GGFLL++GAA+G+ VAVFQ G  
Sbjct  506  DEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWL  565

Query  572  aDLLGVAQEGPIMSLMPVLIIGILFGLAMDYQVFLVTRMREEHVHGATPTRAVTDGFRHS  631
              ++  +Q  P++SL+P+++ GILFGLAMDYQVFLV+R++E H HG++P  AV  GF++S
Sbjct  566  DPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQS  625

Query  632  ARVVTGAALIMTAVFASFIVERDAVIKSVGFALAFGILVDAFVVRMTLIPALMAVLGERA  691
            A VV +AA IM+AVF +F +   +++ S+++ALA G+L DA++VRM L+PAL+++LG  A
Sbjct  626  APVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSA  685

Query  692  WWLPRWLDRVLPRVDVEGEQL--TRRFGPPRPVEPA  725
            WW+PRWLD++LP +DVEG  +   RR ++P  + ++
Sbjct  686  WWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAST  721

77) Micau_5175 in NC_014391


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  219 bits (815),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 285/680 (42%), Positives = 462/680 (68%), Gaps = 22/680 (3%)

Query  41   TASNFTMPGTESQKAIDLLADRFPAASGATGTIAIKAPQDGALTSPDGQAVVKQVTQEAA  100
            +++ F +PGT+S +A+  L   FP+++ AT ++ +     G+  + D+ ++   + ++A 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSAL-EQAR  99

Query  101  TLPGVVGAVDPYQA--QALTPDGRYALIQVQFAGGADEVTDEQRDAYEKVGAQAEAQGWQ  158
             +PGV++  DP ++   ++++DG  A+ QV  ++  +E +DE     + V+A    QG  
Sbjct  100  VIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMA  159

Query  159  IAPGGEVLNGEPEV-GSTEAIGvlvaaivlviTFGSLVAAGMTMLNALIGVGVGMAGLFA  217
               GG + ++ PE+ G+TE +G LVA +VL++TFGSLVAAG  ML AL+GVGVG+ G++A
Sbjct  160  AEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILA  219

Query  218  LSGAVELTSTAPILALMLGLAVGIDYSLFITSRHRQNLLDGLSPEEAVGRavgtagsavv  277
            +S+   + S +PILA+MLGLAVGIDY LF+ SR R +L  G   ++A+GRA +TAGS+VV
Sbjct  220  FSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVV  279

Query  278  fagatvvvalaglavvgIPFLtvmglaaagtvtvavlvaitlapallGFAGHKVLPRKLR  337
            FAGATV++AL GL+VVGIPFL  MG+AAA +V+VAVL+++TL PALL+  G++ L R  R
Sbjct  280  FAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR--R  337

Query  338  DRKAVEDPTTGSEDRSGFGFRWAR-WVTrlripvilvg---llglgllaipaQDMRLALP  393
            +R +   +  ++        RW+  W+  +    ++     + GL+++A+P  +M+ +L 
Sbjct  338  ERASTRSAGGSP--------RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLV  389

Query  394  DASAAAEGTPARVSSDLIREGFGPGFTGRLAVVVTADSPQATQAAIPQVTALVQKTDGVL  453
             +++   ++  R +   + ++FGPG  + L V+V +DS   + +A+  V++ +     V 
Sbjct  390  IPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDS--DAASAVETVSTELGSLPNVA  447

Query  454  AVAPPQVDPSGRTALIGVIPKTGPTEEATETVVHDIRKQVSGIQNADVLLTGVTAVGIDV  513
            +V+P  V + G TA++ VI+ +GP + AT ++V+DIR    G +++ V +TG TA+++D 
Sbjct  448  TVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL--GDDSTSVQVTGSTAIALDS  505

Query  514  SEKLSDALPvylllvvglsilllmlvFRSILVPVKAALGFLLTVAATFGITVAVFQQGHL  573
             E+L  AL  Y+ L+VGLS+LLL+L+FRS+LVP+ A+ GFLL+++A++G TVAVFQ G L
Sbjct  506  DEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWL  565

Query  574  ADLVGLDTPAPLVSflpilligilfglAMDYEVFLVSRMREDFVHGDTAQQATINGMGHG  633
              +V      PL+S+LPI++ GILFGLAMDY+VFLVSR++E   HG ++++A   G  ++
Sbjct  566  DPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQS  625

Query  634  ARVVTAAALIMISVFGGFVFLEDPIIKSMGFALAIGVAIDAFVVRMTIVPAVMSLLNNAA  693
            A VV AAA IM +VF GF +   +++ S+++ALA+GV  DA++VRM +VPA+++LL  +A
Sbjct  626  APVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSA  685

Query  694  WWLPRWLNKILPNVDVEGEG  713
            WW+PRWL+K+LP +DVEG +
Sbjct  686  WWIPRWLDKLLPTIDVEGAA  705

78) ydfJ1 in NC_020504


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  218 bits (810),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 287/701 (41%), Positives = 462/701 (66%), Gaps = 29/701 (4%)

Query  42   DEEFSMPGIESQQAFDLLEERFPGTTGDSATARVVFVAPGGEKvtatenkaaveaavaeL  101
               F +PG +S +A+  LE  FP T   +++ ++V  ++GG     + + ++       +
Sbjct  42   SAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVI  101

Query  102  GDGSQVASAVDPFKAGAVSKDGSTAYTTVTYKVGAVD--LTDASKTHLEEALEHAQGSGL  159
             +   V+ ++DP ++ ++S DG+TA + VT  VG +D   +D   ++L+      ++ G+
Sbjct  102  PGVLAVTDPLDPARP-SISADGATAIAQVT--VGDIDEEQADEVTSELDAVAAGLRDQGM  158

Query  160  TVEAGGTALEDTGGPGGAAEMIGVAIAAVVLLITFGSLAAAGLPLLTAIIGVAVSMatit  219
            + E GG+         G++E++G  +A +VLL+TFGSL AAG  +L A++GV+V++  I 
Sbjct  159  AAEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGIL  218

Query  220  alstalglssttgtlatmlglaVGIDYALFVVSRYREERAKGRAPQEatalatgtagsaV  279
            A+S+   ++S T  LA MLGLAVGIDY LFV+SR+R E   GR  Q+A + AT+TAGS+V
Sbjct  219  AFSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSV  278

Query  280  VFAGLTVVIALAGLSVVGIPMLTKMglaaagavvvgvlialtlvPALLGFWPNavlarkd  339
            VFAG TV+IAL GL+VVGIP L  MG+AAA AV V+VL++LTL+PALL+ W         
Sbjct  279  VFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLS-W---------  328

Query  340  rkarragrttaETPRKDNGGTRWA--RFvlrrplpvlll--gvvglgalaIPMTDLQLGM  395
               R  GR    + R   G+ RW+  ++      PV+     V GL+ +A+P+ ++Q ++
Sbjct  329  MGRRALGRRERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSL  388

Query  396  PGDEAKSTSTTERRAYDALAEGFGPGFNGPLTVVVDAKGAEDPKAAADTISKEIGGTEGV  455
                +    +T+R AY ++A++FGPG ++PL V+V  ++  D+ +A +T+S E+G+   V
Sbjct  389  VIPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLV--RSDSDAASAVETVSTELGSLPNV  446

Query  456  VSVSPAQFNEAGDTAVFSVVPATAPTDEKTKDLVTSIRGERPDMESATGATFDVTGTTAM  515
             +VSP+  +  G TA+++V++ ++P D  T  LV  IR+      +  +++ +VTG+TA+
Sbjct  447  ATVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTAI  501

Query  516  NIDIADKVQSALVPYlilvvglavilllvvFRSILVPLKaalgfllsvlaslgavvvvfQ  575
             +D  ++++SAL++Y+ L+VGL+ +LL+++FRS+LVPL A+ GFLLS+ A+LG+ V VFQ
Sbjct  502  ALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQ  561

Query  576  QGHGAELLGVETTGPIMSLMPIFLVGIVFGLAMDYEVFLVSRMREAYVHGESPAQAVTSG  635
             G    ++      P++SL+PI++ GI+FGLAMDY+VFLVSR++EA  HG SP +AV +G
Sbjct  562  WGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAG  621

Query  636  FRHSarvvvaaalimiavfaGFIGESDSMIKMIgfglaaavlfdafvvRMAIVPAVLALL  695
            F++SA VVVAAA IM AVF GF   + S++  I+++LA +VL DA++VRM +VPA+L+LL
Sbjct  622  FQQSAPVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLL  681

Query  696  GDKAWWLPKWLDRILPRVDVEGEALN---RPVEPSAVPAEK  733
            G  AWW+P+WLD++LP +DVEG A++   R   P+ +++ +
Sbjct  682  GRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELASTR  722

79) ML5_3114 in NC_014815


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  217 bits (809),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 284/680 (42%), Positives = 461/680 (68%), Gaps = 22/680 (3%)

Query  41   TASNFTMPGTESQKAIDLLADRFPAASGATGTIAIKAPQDGALTSPAGQAVVKQVTQEAA  100
            +++ F +PGT+S +A+  L   FP+++ AT ++ +     G+  +  + ++   + ++A 
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSAL-EQAR  99

Query  101  TLPGVVGAVDPYQA--QALTPDGRYALIQVQFAGGADEVTDEQRDAYEKVGAQAEAQGWQ  158
             +PGV++  DP ++   ++++DG  A+ QV  ++  +E +DE     + V+A    QG  
Sbjct  100  VIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMA  159

Query  159  IAPGGEVLNGEPEV-GSTEAIGvlvaaivlviTFGSLVAAGMTMLNALIGVGVGMAGLFA  217
               GG + ++ PE+ G+TE +G LVA +VL++TFGSLVAAG  ML AL+GVGVG+ G++A
Sbjct  160  AEIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILA  219

Query  218  LSGAVELTSTAPILALMLGLAVGIDYSLFITSRHRQNLLDGLSPEEAVGRavgtagsavv  277
            +S+   + S +PILA+MLGLAVGIDY LF+ SR R +L  G   ++A+GRA +TAGS+VV
Sbjct  220  FSAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVV  279

Query  278  fagatvvvalaglavvgIPFLtvmglaaagtvtvavlvaitlapallGFAGHKVLPRKLR  337
            FAGATV++AL GL+VVGIPFL  MG+AAA +V+VAVL+++TL PALL+  G++ L R  R
Sbjct  280  FAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGR--R  337

Query  338  DRKAVEDPTTGSEDRSGFGFRWAR-WVTrlripvilvg---llglgllaipaQDMRLALP  393
            +R +   +  ++        RW+  W+  +    ++     + GL+++A+P  +M+ +L 
Sbjct  338  ERASTRSAGGSP--------RWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLV  389

Query  394  DASAAAEGTPARVSSDLIREGFGPGFTGRLAVVVTADSPQATQAAIPQVTALVQKTDGVL  453
             +++   ++  R +   + ++FGPG  + L V+V +DS   + +A+  V++ +     V 
Sbjct  390  IPGGEDPDSTQRAAYTTVADAFGPGAQDPLVVLVRSDS--DAASAVETVSTELGSLPNVA  447

Query  454  AVAPPQVDPSGRTALIGVIPKTGPTEEATETVVHDIRKQVSGIQNADVLLTGVTAVGIDV  513
            +V+P  V + G TA++ VI+ +GP + AT ++V+DIR    G +++ V +TG TA+++D 
Sbjct  448  TVSPGPVSADGSTAMLTVIAESGPLDTATTSLVRDIRAL--GDDSTSVQVTGSTAIALDS  505

Query  514  SEKLSDALPvylllvvglsilllmlvFRSILVPVKAALGFLLTVAATFGITVAVFQQGHL  573
             E+L  AL  Y+ L+VGLS+LLL+L+FRS+LVP+ A+ GFLL+++A++G TVAVFQ G L
Sbjct  506  DEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWL  565

Query  574  ADLVGLDTPAPLVSflpilligilfglAMDYEVFLVSRMREDFVHGDTAQQATINGMGHG  633
              +V      PL+S+LPI++ GILFGLAMDY+VFLVSR++E   HG ++++A   G  ++
Sbjct  566  DPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQS  625

Query  634  ARVVTAAALIMISVFGGFVFLEDPIIKSMGFALAIGVAIDAFVVRMTIVPAVMSLLNNAA  693
            A VV AAA IM +VF GF +   +++ S+++ALA+GV  DA++VRM +VPA+++LL  +A
Sbjct  626  APVVVAAAAIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSA  685

Query  694  WWLPRWLNKILPNVDVEGEG  713
            WW+PRWL+K+LP +DVEG +
Sbjct  686  WWIPRWLDKLLPTIDVEGAA  705

80) SCAB_66061 in NC_013929


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  210 bits (783),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 304/722 (43%), Positives = 475/722 (66%), Gaps = 25/722 (3%)

Query  1    MATFLYRLGRLAFRKRWYVILMWvavlgavgvgalkapgaSDEEFSMPGIESQKAFDLLE  60
            M+++LYRLG L+ R RW V+  W+ VL   +  AL +   S   F +PG +S +A+  LE
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGVTADGATARVVFVAPNGEKITATGNK-KAVEETVADLADGSQVASAVDPFRARAV  119
              FP  T++++T+  + V ++G ++T  +    +  E    +++   V+ ++DP R+ ++
Sbjct  61   SEFPT-TGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARP-SI  118

Query  120  SQDGttayatvtykataaDLSDASRTHLEDALHKAQKSGLTVEAGGTAVADQGGPGGAAE  179
            S DG+TA A VT      + +D   ++L+      +  G++ E GG+  +      G++E
Sbjct  119  SADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTE  178

Query  180  IIGvalaavvllvTFgslaaaglplltalvgvglSMATIMVlsealglstttgtlammlg  239
            ++G  +A +VLL+TFGSL AAG  +L ALVGVG+++  I+ +S    +++ T  LA+MLG
Sbjct  179  LVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLG  238

Query  240  laVGIDYALFVVSRYREERAGGRTPQEatalatgtagsaVVFAGLTVVIALAGLTVVGIP  299
            LAVGIDY LFV+SR+R E  +GR  Q+A + AT+TAGS+VVFAG TV+IAL GLTVVGIP
Sbjct  239  LAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIP  298

Query  300  MLTKMGlaaagavvvavlialtlvpavlGCWPNAVLSRKARRS-GRIE-EEARDNGGT-R  356
             L  MG+AAA AV VAVL++LTL+         A+LS+ +RR+ GR E   +R  GG+ R
Sbjct  299  FLGEMGIAAAFAVAVAVLMSLTLL--------PALLSWMGRRALGRRERASTRSAGGSPR  350

Query  357  WSRF----vlrrpvpvlllgvvglgalaIPMTDLQLGMPGDEAKSTSTTERRAYDALAEG  412
            W+      VLRRPV   +  V GL+ +A+P+ ++Q ++    +    +T+R AY ++A++
Sbjct  351  WTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADA  410

Query  413  FGPGFNGPLTIvvdargaddakgaaekvakeIGDTKGIVSVSPPQFNEAGDTAVFSAVPA  472
            FGPG ++PL ++V + +   +   +      +G    + +VSP   +  G TA+++ ++ 
Sbjct  411  FGPGAQDPLVVLVRSDSDAASAVETVSTE--LGSLPNVATVSPGPVSADGSTAMLTVIAE  468

Query  473  TAPTDEKTKDLVTVIRDERPAIESGTGATFEVTGTTALNIDISGKVQSAlvpyllvvvgl  532
            ++P D  T  LV   RD R+  + +T+   +VTG+TA+ +D   +++SAL++Y+ ++VGL
Sbjct  469  SGPLDTATTSLV---RDIRALGDDSTSV--QVTGSTAIALDSDEQLRSALIAYVALIVGL  523

Query  533  avlllmvvFRSLLVPLKaaagfllsvlaslgvvvlvfQQGHGAELLGVEQTGPIMSLMPI  592
            + LLL+++FRS+LVPL A++GFLLS+ A+LG  V VFQ G    ++   Q  P++SL+PI
Sbjct  524  SFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPI  583

Query  593  FLVGIVFGLAMDYEVFLVSRMREAYVHGDRADEAITSGFRHSarvvvaaalimiavfaGF  652
            ++ GI+FGLAMDY+VFLVSR++EA  HG  + EA+ +GF++SA VVVAAA IM AVF GF
Sbjct  584  IVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGF  643

Query  653  IGESDSMIKMIGFGLASAVLFDAFVVRMAIVPAVLTLLGDRAWWLPKWLDRALPRVDVEG  712
               + S++  I+++LA +VL DA++VRM +VPA+LTLLG  AWW+P+WLD+ LP +DVEG
Sbjct  644  ALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEG  703

Query  713  EA  714
             A
Sbjct  704  AA  705

81) SACTE_5687 in NC_015953


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  207 bits (769),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 324/713 (46%), Positives = 487/713 (69%), Gaps = 19/713 (2%)

Query  1    MAILLYRLGRLSFRHRGRVlalwllllallggaaaaFSGP--TTSKFSIPGTESQKAMDS  58
            M+ LLYRLG LS   R+R   +   LL LL +A+ A+SG   +++ F +PGT+S +A+ +
Sbjct  1    MSALLYRLGVLS--ARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALST  58

Query  59   LAREFPQaggatgtiv-vaapaggKLT--PAAVAPVTEDASKVSGVVGAVDPFASG--AV  113
            L  EFP +G AT ++  V  ++GG++T  ++++++  E+A  ++GV++  DP+ ++  ++
Sbjct  59   LESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSI  118

Query  114  SPDGRYALVQVQFTSPADDITDAQREAF--TKAGASADGLRVEHGGEIMRGAPEI-GSTE  170
            S+DG  A+ QV      ++ +D     +    AG   +G+  E GG +  + PEI G+TE
Sbjct  119  SADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPTE  178

Query  171  GIGvavaalvlvlTFGSLAAAGMTllnalvgvaagmaglfalSSTVELTSTAPILALMLG  230
             +G  VA LVL+LTFGSL AAG  +L ALVGV+ G+ G++A+S+   + S +PILA+MLG
Sbjct  179  LVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLG  238

Query  231  LAVGIDYALFITSRYRQYLFEGMDreeaagratgtagSAVVFagatvvialvglavagvP  290
            LAVGIDY LF+ SR+R  L  G   ++A GRAT+TAGS+VVFAGATV+IALVGL+V G+P
Sbjct  239  LAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIP  298

Query  291  FltvmgvaaaatvalavlvsltllpavlSFAGPRVLPRKRRAPDRAPSPAEADAAFGFRW  350
            FL  MG+AAA +VA+AVL+SLTLLPA+LS  G R L R+ RA+ R+   A + +     W
Sbjct  299  FLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRERASTRS---AGGSPRWTTTW  355

Query  351  GrivarlrvpvlvlgviglgalalpvQDMRLALPDAGTEAVGSPNREAYDLTTEGFGEGF  410
               V R  V      V GL+ +ALP+ +M+ +L  +G E  +S +R AY   +++FG G 
Sbjct  356  IGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPGA  415

Query  411  NGRLVAVVSgdtaqatgaaakeaaalitgtEGVLAVAPPQLNKEGTTALLAVIPKTGPTA  470
            ++ LV +V +D+  A++  +  +         V +V+P  ++ +G+TA+L+VI+ +GP  
Sbjct  416  QDPLVVLVRSDSDAASAVETVSTELGSL--PNVATVSPGPVSADGSTAMLTVIAESGPLD  473

Query  471  AATEDTVHSIRDRVKGVEGATISLTGATAVGIDVSEKLGDAlpvylllvvglsvlllmlv  530
            +AT   V+ IR    G +++++ +TG+TA+++D  E+L  AL  Y+ L+VGLS LLL+L+
Sbjct  474  TATTSLVRDIRA--LGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLL  531

Query  531  frsvlvPLKAALGFLLTVGATFGITVAIFQEGHLADLVGLDTPGPLVSflpilligilfg  590
            FRS LVPL A+ GFLL++GA++G TVA+FQ G L  +V      PL+S+LPI++ GILFG
Sbjct  532  FRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLPIIVTGILFG  591

Query  591  lAMDYEVFLVSRMREDFVHGSDAREAVVSGVGHNarvvtaaavimtavFGGFVLMEDPII  650
            LAMDY+VFLVSR++E   HG+ +REAV +G  ++A VV AAA IM+AVF GF L   +++
Sbjct  592  LAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFGFALSPSSLV  651

Query  651  KSIGFALAIGVLVDAFVVRMTLVPAVMHLLGRAAWWLPRPVDRALPDLDIEGE  703
             SI++ALA+GVL DA++VRM LVPA++ LLGR+AWW+PR +D+ LP +D+EG 
Sbjct  652  GSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGA  704

82) Strvi_0392 in NC_015957


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  205 bits (763),  Expect = 8e-54, Method: Compositional matrix adjust.
 Identities = 313/731 (43%), Positives = 485/731 (67%), Gaps = 23/731 (3%)

Query  1    MATFLYRVGRLAFRRRWYvalvwaavlaavglgalkapgaSDDGFSMPGIEAQKAFDLME  60
            M+++LYR+G L+ R RW V   W  VL   +  AL +   S  GF +PG ++ +A+  +E
Sbjct  1    MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLE  60

Query  61   QRFPGATADGATARVVFVAPSGEKVTATENKRAVEKAVADLADGTQVASAVDPFQAK--A  118
              FP +T++++T+  + V +SG +VT  ++  ++  A+ +      V +  DP+++   +
Sbjct  61   SEFP-TTGEATTSLQLVVQSSGGRVT--DDAPSLTSALEQARVIPGVLAVTDPLDPARPS  117

Query  119  VSKDGttayatvtykvaaddltdadrtrlERAIHTAQDSGLTVeaggsamddgggaggaa  178
            +S DG+TA A VT     ++ +D   + L+      +D G++ E GGS         G++
Sbjct  118  ISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAAEIGGSLTSAVPEILGPT  177

Query  179  evigvviaavvllaTFGSLVAAGLPLLTALIGVGVSTATIltlsqalglstttgtlamml  238
            E++G ++A +VLL TFGSLVAAG  +L AL+GVGV+   IL++S    +++ T  LA+ML
Sbjct  178  ELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVML  237

Query  239  glaVGIDYALFVVSRYREERAKGRAPQEAVGLAVGTAGSAVVFagltvvialaglavvgi  298
            GLAVGIDY LFV+SR+R E   GR  Q+A+G A +TAGS+VVFAG TV+IAL GL+VVGI
Sbjct  238  GLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGI  297

Query  299  PMLTKMGlaaagavvvavlialtlvpaFLGFW-PNAVLRRRARKTGRIEDESTRNNGGSR  357
            P L  MG+AAA AV VAVL++LTL+PA+L+ W     L RR R + R  + S R    + 
Sbjct  298  PFLGEMGIAAAFAVAVAVLMSLTLLPALLS-WMGRRALGRRERASTRSAGGSPRWT--TT  354

Query  358  WarfvlrrplpvlllgvvglgalavpMTALQLGMPGDEAKSTSTTERRAYDALAEAFGPG  417
            W   VLRRP+   +  V GL+ +A+P+ ++Q ++    +    +T+R AY ++A+AFGPG
Sbjct  355  WIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQRAAYTTVADAFGPG  414

Query  418  FNGPLTVVVDANGDAETKGADAKGAADTVAKKLRGTEGVISVSPPRFNEAGDTAVFQVVP  477
             ++PL V+V +++DA +       A +TV+  L +   V +VSP   +  G TA++ V++
Sbjct  415  AQDPLVVLVRSDSDAAS-------AVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIA  467

Query  478  STSPTDEKTKDLVTTIRGERPGVESETGATFEVTGTTALNIDISDKVQAALIPYlvvvvg  537
             ++P D  T  LV  IR+      ++ +++ +VTG+TA+ +D  +++++ALI+Y+ ++VG
Sbjct  468  ESGPLDTATTSLVRDIRAL-----GDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVG  522

Query  538  laivlllvvfrsllvplKAalgfllsvlaslgvvvlvfQQGHGAGLLGVEQTGPIMSLMP  597
            L+++LL+++FRS+LVPL A+ GFLLS+ A+LG  V VFQ G    ++   Q  P++SL+P
Sbjct  523  LSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQGNPLLSLLP  582

Query  598  IFLVGIVFGLAMDYEVFLVSRMREAYVHGERPGEAITSGFRHSarvvvaaalimiavfaG  657
            I++ GI+FGLAMDY+VFLVSR++EA  HG  P EA+ +GF++SA VVVAAA IM AVF G
Sbjct  583  IIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVFFG  642

Query  658  FVGESDSMIKMIGFGLASAVLFDAFVVRMAIVPAVLALLGDRAWWLPKWLDRLLPNVDVE  717
            F   + S++  I+++LA +VL DA++VRM +VPA+L+LLG  AWW+P+WLD+LLP +DVE
Sbjct  643  FALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVE  702

Query  718  GEAL--SRRQE  726
            G A+   RR+ 
Sbjct  703  GAAFDDDRREA  713

83) SFUL_224 in NC_021177


> NC_009480_P1|71|G60|148271271|YP_001220832.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|95906..98077|-|CMM_0093|RND 
family transporter
Length=723

 Score =  182 bits (676),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 305/683 (45%), Positives = 465/683 (69%), Gaps = 15/683 (2%)

Query  41   ATSEFSIPGTESQQALDSLAREFPQaggatgtii-vaaPEGEKLTpaavapvve--eaae  97
            +++ F +PGT+S +AL +L  EFP +G AT ++  V  + G ++T  A +      +A  
Sbjct  41   SSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSSGGRVTDDAPSLTSALEQARV  100

Query  98   vpgvlaaIDPFQA--RALSPDGRYALVQVQFDSVADSVTDAQRKSFTAAGAS--AEGLRV  153
            +PGVLA  DP+++   ++S+DG  A+ QV  + + +  +D     + A +A+   +G+  
Sbjct  101  IPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAA  160

Query  154  EHGGEIMRGAPEI-GSTEIIgvgvaalvlvlTFGSLVAAGMTllnalvgvaagmaglFSL  212
            E GG +  + PEI G+TE++G  VA LVL+LTFGSLVAAG  +L ALVGV+ G+ G++++
Sbjct  161  EIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAF  220

Query  213  SSIVELTSTAPILALMLGLAVGIDYALFITSRYRQYLadgmdgeeaagraagtagsaVVF  272
            S+I  + S +PILA+MLGLAVGIDY LF+ SR+R  L  G   ++A GRA++TAGS+VVF
Sbjct  221  SAIAPIGSVTPILAVMLGLAVGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVF  280

Query  273  agatvvialaglavagvPFltvmglaaaatvalavlvsltllpavlGFAGVRVLPRARRT  332
            AGATV+IAL GL+V G+PFL  MG+AAA +VA+AVL+SLTLLPA+L+  G R L R  R 
Sbjct  281  AGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLTLLPALLSWMGRRALGRRER-  339

Query  333  QDSAPSSAGTGTAFGFRWGRIvarlrvpvllvgvvglgalalpvQDMRLALPDASTEAAG  392
              ++  SAG +      W   V R  V   +  V GL+ +ALP+ +M+ +L  ++ E ++
Sbjct  340  --ASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPD  397

Query  393  SPNREAYDLTTEGFGEGFNGRLVavvsaadaqataqaakeataLISDTDGVLAVAAPQLN  452
            S +R AY   +++FG G ++ LV +V +    A+A  +  +   ++    V +V++  ++
Sbjct  398  STQRAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTE--LGSLPNVATVSPGPVS  455

Query  453  ERGTTALLAVIPKTGPTAAATEDTVHAIRDRVAGVQGADIALTGVTAVGIDVSEKlaaal  512
              G+TA+L+VI+ +GP  +AT   V+ IR    G +++ + +TG TA+++D  E+L +AL
Sbjct  456  ADGSTAMLTVIAESGPLDTATTSLVRDIRA--LGDDSTSVQVTGSTAIALDSDEQLRSAL  513

Query  513  pvylllvvglsvlllmlvfrsvlvPLKAALGFLLTIGATFGITVAIFQEGHLSQLVGLDT  572
              Y+ L+VGLS LLL+L+FRS LVPL A+ GFLL++GA++G TVA+FQ G L  +V    
Sbjct  514  IAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVFQWGWLDPIVQAPQ  573

Query  573  PGPLVSflpilligilfglAMDYEVFLVSRMREDFVHGTEARQAVISGVGHNarvvtaaa  632
              PL+S+LPI++ GILFGLAMDY+VFLVSR++E   HGT +R+AV +G  ++A VV AAA
Sbjct  574  GNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAA  633

Query  633  iimtavFGGFVFMHDPVIKSIGFALAIGVLIDAFVVRMALVPAVMHLLGRAAWWLPRPVD  692
             IM+AVF GF +   +++ SI++ALA+GVL DA++VRM LVPA++ LLGR+AWW+PR +D
Sbjct  634  AIMAAVFFGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLD  693

Query  693  RVLPDLDIEGERLNQAIPEQRPE  715
            ++LP +D+EG  +++   E  P+
Sbjct  694  KLLPTIDVEGAAFDDDRREAAPN  716