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Homologs of SE0093 gene of NC_004461_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE0093
( NP_763648.1 )

TetR family transcriptional regulator

NC_004461
(Staphylococcus epidermidis ATCC 12228)

2e-80

100

2) SH0078
( YP_251993.1 )

hypothetical protein

NC_007168
(Staphylococcus haemolyticus JCSC1435)

1e-54

3) SSP0132
( YP_300222.1 )

transcriptional regulator

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

2e-47

4) SH2612
( YP_254527.1 )

hypothetical protein

NC_007168
(Staphylococcus haemolyticus JCSC1435)

5e-29

• Sequence Alignments

1) SE0093 in NC_004461


> NC_004461_R1|71|G71|27467011|NP_763648.1|Staphylococcus_epidermidis_ATCC_12228|-|59299..59844|-|SE0093|TetR 
family transcriptional 
regulator
Length=181

 Score =  291 bits (1089),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%), Gaps = 0/181 (0%)

Query  1    MRIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEI  60
            MRIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEI
Sbjct  1    MRIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEI  60

Query  61   MKKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKR  120
            MKKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKR
Sbjct  61   MKKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKR  120

Query  121  NVLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLFI  180
            NVLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLFI
Sbjct  121  NVLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLFI  180

Query  181  D  181
            D
Sbjct  181  D  181

2) SH0078 in NC_007168


> NC_004461_R1|71|G71|27467011|NP_763648.1|Staphylococcus_epidermidis_ATCC_12228|-|59299..59844|-|SE0093|TetR 
family transcriptional 
regulator
Length=181

 Score =  206 bits (765),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 132/178 (75%), Positives = 157/178 (89%), Gaps = 0/178 (0%)

Query  10   RIIKTkrntlnalkrllkrkkFADISVKDICIEGNVSRGTFYLHYKDKYDLVYKYQIEIM  69
            RIIKTKR+  NALKRLLK KKF +ISVKDIC EG++SRGTFYLHYKDKYDL YKYQIEIM
Sbjct  2    RIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEIM  61

Query  70   KKIQPILESVNYLSLEEFFAKAIHFWSNDAELLMLLISDNGSTDIQNQVKRLIQQNAKKN  129
            KK+Q I+E VN L +++FF K I+FW+ +AELLMLLISDNGS++IQ+QVKRLIQ NAK+N
Sbjct  62   KKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKRN  121

Query  130  ILPIINTNNYSEIEKHYLTIFLSNAIIGIIQEWINNGQKESPDELSAILSKIAPKHLF  187
            +LP+I+TN  +E E+HYLT+FLSN I+GIIQEW+NNGQKESP+ELS ILSKI PK LF
Sbjct  122  VLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLF  179

3) SSP0132 in NC_007350


> NC_004461_R1|71|G71|27467011|NP_763648.1|Staphylococcus_epidermidis_ATCC_12228|-|59299..59844|-|SE0093|TetR 
family transcriptional 
regulator
Length=181

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 102/178 (58%), Positives = 145/178 (82%), Gaps = 0/178 (0%)

Query  10   RILKTKRNTRKALITLLKHKKYDDISVKDICEVAGISRGTFYLHYKDKFDLVEQYQFEIT  69
            RI+KTKR+ ++AL  LLK+KK+D+ISVKDIC  +++SRGTFYLHYKDK+DL  +YQ+EI 
Sbjct  2    RIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEIM  61

Query  70   KEGSKRVQSLLQSERHLLYYHIINFWNNEAELLLLLISNNGSPDVQNQLKKTLQYNAEKN  129
            K     ++ +     + ++Y +I+FWN EAELL+LLIS+NGS+++Q+Q+K+ +QYNA +N
Sbjct  62   KKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKRN  121

Query  130  VFPYTKKSHFSEKERHYFVVFLSNAIFGIIQEWVNNGQQETPEELSTIIHKIIPDSLL  187
            V+P  K + ++E+E+HY+ VFLSN IFGIIQEWVNNGQ+E+PEELS I+ KI+P SL+
Sbjct  122  VLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLF  179

4) SH2612 in NC_007168


> NC_004461_R1|71|G71|27467011|NP_763648.1|Staphylococcus_epidermidis_ATCC_12228|-|59299..59844|-|SE0093|TetR 
family transcriptional 
regulator
Length=181

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 76/179 (43%), Positives = 132/179 (74%), Gaps = 1/179 (0%)

Query  9    RVYKTLTKIENDMIRLLEDKPYKDINVKDICRESGISRGTFYQHYTNKDDFLYQYQKEMM  68
            R+ KT   I+N + RLL +K + +I+VKDIC+E+++SRGTFY HY +K D+ Y+YQ E+M
Sbjct  2    RIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEIM  61

Query  69   KKLKKWLRKNEHIERIQFFEYVLNFWLYEGEllllllKDESAYIIHQAIKKNFQQNIEVH  128
            KK++  + K + +   +FF  V++FW  E+ELL+LL+ D+++  I+  +K+ +Q N   +
Sbjct  62   KKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKRN  121

Query  129  LVPIINTNSLTNKEKYLLIIFMSNAIFGVLQDWVQRGRQESPKELTYAINNIF-KTVFV  186
            ++P+I+TN LT++E+  L +F+SN IFG++Q+WV+ G++ESP EL+  +++I  K++F+
Sbjct  122  VLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLFI  180