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Homologs of sigA gene of NC_004337_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) O3M_22910
( YP_006772193.1 )

Serine protease pet precursor (Plasmid-encoded toxin pet)

NC_018650
(Escherichia coli 2009EL-2050)

0.0

100

2) O3O_02375
( YP_006786382.1 )

Serine protease pet precursor (Plasmid-encoded toxin pet)

NC_018661
(Escherichia coli 2009EL-2071)

0.0

100

3) O3K_23005
( YP_006781255.1 )

Serine protease pet precursor (Plasmid-encoded toxin pet)

NC_018658
(Escherichia coli 2011C-3493)

0.0

100

4) EC55989_4682
( YP_002405547.1 )

Serine protease pet precursor (Plasmid-encoded toxin pet)

NC_011748
(Escherichia coli 55989)

0.0

100

5) SFxv_3250
( YP_005728588.1 )

Serine protease

NC_017328
(Shigella flexneri 2002017)

0.0

100

6) sigA
( NP_838462.1 )

serine protease

NC_004741
(Shigella flexneri 2457T)

0.0

100

7) sigA
( NP_708742.1 )

serine protease

NC_004337
(Shigella flexneri 301)

0.0

100

8) SSON53_18280
( YP_005458160.1 )

serine protease

NC_016822
(Shigella sonnei 53G)

0.0

9) sigA
( YP_312039.1 )

serine protease

NC_007384
(Shigella sonnei Ss046)

0.0

10) sigA
( YP_406777.1 )

serine protease

NC_007613
(Shigella boydii Sb227)

0.0

11) sigA
( YP_410405.1 )

serine protease

NC_007613
(Shigella boydii Sb227)

0.0

12) SbBS512_E4650
( YP_001882815.1 )

serine protease EatA

NC_010658
(Shigella boydii CDC 3083-94)

0.0

13) ECH74115_B0104
( YP_002268480.1 )

immunoglobulin A1 protease domain protein

NC_011350
(Escherichia coli EC4115)

0.0

14) espP
( YP_325580.1 )

putative exoprotein-precursor

NC_007414
(Escherichia coli EDL933)

0.0

15) espP
( NP_052685.1 )

EspP

NC_002128
(Escherichia coli Sakai)

0.0

16) espP
( YP_003082230.1 )

putative exoprotein-precursor

NC_013010
(Escherichia coli TW14359)

0.0

17) espP
( YP_006315987.1 )

EspP

NC_017907
(Escherichia coli Xuzhou21)

0.0

18) pet
( YP_006099165.1 )

serine protease (plasmid-encoded toxin Pet)

NC_017627
(Escherichia coli 042)

0.0

19) espC
( YP_002330403.1 )

serine protease

NC_011601
(Escherichia coli E2348/69)

0.0

20) ECABU_c32840
( YP_006107283.1 )

putative secreted autotransporter toxin sat

NC_017631
(Escherichia coli ABU 83972)

0.0

21) sat
( YP_006145461.1 )

secreted autotransporter, serine protease

NC_017646
(Escherichia coli CE10)

0.0

22) sat
( NP_755494.1 )

secreted auto transporter toxin

NC_004431
(Escherichia coli CFT073)

0.0

23) sat
( YP_002414040.1 )

Serine protease

NC_011751
(Escherichia coli UMN026)

0.0

24) sat
( YP_006155394.1 )

secreted auto transpoter toxin

NC_017652
(Escherichia coli clone D i14)

0.0

25) sat
( YP_006150475.1 )

secreted auto transpoter toxin

NC_017651
(Escherichia coli clone D i2)

0.0

26) ECSF_4014
( YP_003352004.1 )

serine protease

NC_013654
(Escherichia coli SE15)

0.0

27) ROD_p1251
( YP_003368469.1 )

putative serine protease autotransporter

NC_013717
(Citrobacter rodentium ICC168)

0.0

28) espC
( YP_006141430.1 )

Per-activated serine protease autotransporter enterotoxin EspC

NC_017644
(Escherichia coli NA114)

0.0

29) ECO111_p3-23
( YP_003237769.1 )

serine protease EspP

NC_013366
(Escherichia coli 11128)

0.0

30) pic
( NP_838464.1 )

serine protease precurser

NC_004741
(Shigella flexneri 2457T)

2e-170

• Sequence Alignments

1) EC55989_4682 in NC_011748


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

2) O3M_22910 in NC_018650


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

3) O3O_02375 in NC_018661


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

4) O3K_23005 in NC_018658


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

5) SFxv_3250 in NC_017328


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

6) sigA in NC_004741


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

7) sigA in NC_004337


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1950 bits (7407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1285/1285 (100%), Positives = 1285/1285 (100%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

8) SSON53_18280 in NC_016822


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1947 bits (7395),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1282/1285 (99%), Positives = 1284/1285 (99%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFLSSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGF+SSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGELTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGG LTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsassgysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSAS+GYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

9) sigA in NC_007384


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1947 bits (7395),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1282/1285 (99%), Positives = 1284/1285 (99%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFLSSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGF+SSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGELTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGG LTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsassgysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSAS+GYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

10) sigA in NC_007613


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1945 bits (7389),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1282/1285 (99%), Positives = 1283/1285 (99%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGELTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGG LTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASS+AAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEVGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGE GAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

11) sigA in NC_007613


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1945 bits (7389),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1282/1285 (99%), Positives = 1283/1285 (99%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGELTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGG LTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASS+AAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEVGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGE GAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

12) SbBS512_E4650 in NC_010658


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1943 bits (7383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1281/1285 (99%), Positives = 1282/1285 (99%), Gaps = 0/1285 (0%)

Query  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVilgiilssiygsygETAFAAMLDIN  60
             MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120
             NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  121   SVTATHNGTQHHAIKTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180
             SVTATHNGTQHHAI TQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240
             EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300
             YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGELTLKQDTDLGIGGLIFDKNQTY  360
             LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGG LTLKQDTDLGIGGLIFDKNQTY
Sbjct  301   LVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTY  360

Query  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420
             KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI
Sbjct  361   KVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVI  420

Query  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480
             LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD
Sbjct  421   LSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATD  480

Query  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540
             AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK
Sbjct  481   AGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIK  540

Query  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600
             NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS
Sbjct  541   NDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKS  600

Query  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660
             NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF
Sbjct  601   NNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMF  660

Query  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720
             SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI
Sbjct  661   SGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLI  720

Query  721   INKGATVTAQGKMYVDKAIELAgtltltgtptENNKYSPAIYMSDGYNMTEDGATLKAQN  780
             INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN
Sbjct  721   INKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQN  780

Query  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840
             YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS
Sbjct  781   YAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASAS  840

Query  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900
             MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN
Sbjct  841   MYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVN  900

Query  901   QSDKLIVKNQLTGRNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960
             QSDKLIVKNQLTG NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI
Sbjct  901   QSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNI  960

Query  961   SPVISTKEDQEHTTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020
             SPVISTKEDQEHTTWTLTGYKVAENTASS+AAKSYMSGNYKAFLTEVNNLNKRMGDLRDT
Sbjct  961   SPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDT  1020

Query  1021  NGEAGAWARIMsgagsasggysDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080
             NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA
Sbjct  1021  NGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNA  1080

Query  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140
             FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA
Sbjct  1081  FSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEA  1140

Query  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200
             GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS
Sbjct  1141  GYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFS  1200

Query  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260
             GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG
Sbjct  1201  GKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFG  1260

Query  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285
             LEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1261  LEFEKSAFGKYNVDNAINANFRYSF  1285

13) ECH74115_B0104 in NC_011350


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1168 bits (4428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1312 (56%), Positives = 1024/1312 (79%), Gaps = 39/1312 (2%)

Query  1     MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSSY---SFASQ  57
             MNKIYSLKYSHITGGL+AVSEL+ +VS    G  + K IL++ +L+ + +SY   +FA+ 
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVS---VGTSRKKVILGI-ILSSIYGSYGETAFAAM  56

Query  58    MDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPFPDFSPVANKGSTTSI  117
             +DI+N+  RDY+D+AQN+G F++GATN++++ KDG  + +PE+P PDFS+V+NKG+TTSI
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  118   GGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVSRLDKFVVETRGATEGAD  177
             GGAYS+TATHN  +HH+++TQ+W++++YK +++  S  DF+V RL+KFVVET G TE+AD
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVHRLNKFVVETTGVTESAD  175

Query  178   ISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITPFNEVSYKPEMLNGSFVHI  237
             +SLS ++A+ RYGVNY+G  ++I+FRAG+G  S   NG+   F + +Y+P++L++S+ ++
Sbjct  176   FSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQ-NYNPDLLSASLFNL  234

Query  238   DDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHA-  296
             D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  G    +  + ++ N A 
Sbjct  235   D-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTV-GFISSTNIAW  291

Query  297   -AYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDI  355
               YS  N+  ++NLK++++  +++ G       +  L++       IK+KDL  +GGG +
Sbjct  292   TNYSLFNNILVNNLKKNFTNTMQLDG------KKQELSSI------IKDKDLSVSGGGVL  339

Query  356   LLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGD  415
              LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TVEWN++    DNLHKIG 
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  416   GTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAK  475
             GTLDV+ +Q  NLK G+G VIL+AEK+FN+IY+++G GTV++NA +ALS +    I+F++
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTR  459

Query  476   NGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYIYHGNINGNL---DVL  532
             NGGTLDLNGY+QSF+KIAATD+G+ +TN++ K+S LSL NT  Y+YHGN++GN+   +++
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  533   QHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAFSCSLPAPMRFLC  592
             +  +  ++N  LI+DG+VD  NDIS+RN+QL++QGHATEHAI+++G  +C++P    FLC
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP----FLC  575

Query  593   GSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLHLENSDFSVGRNA  652
               DY A++++ E+   K+    YK+NN ++ +SQPDWE+  F F  L+LEN+ +S+GR+A
Sbjct  576   QKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDA  635

Query  653   NVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAED  712
             NV G+I+A +S+I +G+ TAYID+ +G+NITG+GFGFRQ++  G+S GE+ F G+++A++
Sbjct  636   NVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQN  695

Query  713   STIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKDN  772
             S I + DK+    +  + L+NT   I++GA VT+Q+ M+    I ++G L++TG P  +N
Sbjct  696   SKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENN  755

Query  773   KFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDESDLSQLSDRTSK  832
             K+ P+IY++D+ Y +T+D+A L A+N A V G+I S K ASI+FG D+    +L   T  
Sbjct  756   KYSPAIYMSDG-YNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  833   GLALGLLGGFDVSYRGSVNAPSASATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKK  892
              LA GLLGGFD SY G+++AP+ASA+M NT W++ G+SAL++LK+ +S++ F++  +N  
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSN-IENSG  873

Query  893   FHTLTVDELATSNSAYAMRTNLSES----DKLEVKKHLSGENNILLVDFLQKPTPEKQLN  948
             FHT+TV+ L ++N+A  MR++LS+S    DKL VK++L+G NN L VD+ +    +  LN
Sbjct  874   FHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLN  933

Query  949   IELVSAPKDTNENVFKASKQTIGFSDVTPVITTRETDDKITWSLTGYNTVANKEATRNAA  1008
             ++L++APK++N ++FKAS Q+IGFS+++PVI+T+E ++  TW+LTGY+   N  ++  A 
Sbjct  934   VDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAK  993

Query  1009  ALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVD  1068
             +  S +YKAFL EVNNLNKRMGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVD
Sbjct  994   SYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVD  1053

Query  1069  KKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHH  1128
             KKHELDGLDLFTG+T+T TDS AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHH
Sbjct  1054  KKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHH  1113

Query  1129  DNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQ  1188
             DNEY+ATFAGLGT+DYS+HS Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+
Sbjct  1114  DNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDR  1173

Query  1189  GMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEK  1248
             GM ++MKDKD+NPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEK
Sbjct  1174  GMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEK  1233

Query  1249  RIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1300
             RIKGEKD+R+LM+VGLNAEIRDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1234  RIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

14) espP in NC_007414


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1168 bits (4428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1312 (56%), Positives = 1024/1312 (79%), Gaps = 39/1312 (2%)

Query  1     MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSSY---SFASQ  57
             MNKIYSLKYSHITGGL+AVSEL+ +VS    G  + K IL++ +L+ + +SY   +FA+ 
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVS---VGTSRKKVILGI-ILSSIYGSYGETAFAAM  56

Query  58    MDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPFPDFSPVANKGSTTSI  117
             +DI+N+  RDY+D+AQN+G F++GATN++++ KDG  + +PE+P PDFS+V+NKG+TTSI
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  118   GGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVSRLDKFVVETRGATEGAD  177
             GGAYS+TATHN  +HH+++TQ+W++++YK +++  S  DF+V RL+KFVVET G TE+AD
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVHRLNKFVVETTGVTESAD  175

Query  178   ISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITPFNEVSYKPEMLNGSFVHI  237
             +SLS ++A+ RYGVNY+G  ++I+FRAG+G  S   NG+   F + +Y+P++L++S+ ++
Sbjct  176   FSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQ-NYNPDLLSASLFNL  234

Query  238   DDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHA-  296
             D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  G    +  + ++ N A 
Sbjct  235   D-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTV-GFISSTNIAW  291

Query  297   -AYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDI  355
               YS  N+  ++NLK++++  +++ G       +  L++       IK+KDL  +GGG +
Sbjct  292   TNYSLFNNILVNNLKKNFTNTMQLDG------KKQELSSI------IKDKDLSVSGGGVL  339

Query  356   LLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGD  415
              LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TVEWN++    DNLHKIG 
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  416   GTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAK  475
             GTLDV+ +Q  NLK G+G VIL+AEK+FN+IY+++G GTV++NA +ALS +    I+F++
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTR  459

Query  476   NGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYIYHGNINGNL---DVL  532
             NGGTLDLNGY+QSF+KIAATD+G+ +TN++ K+S LSL NT  Y+YHGN++GN+   +++
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  533   QHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAFSCSLPAPMRFLC  592
             +  +  ++N  LI+DG+VD  NDIS+RN+QL++QGHATEHAI+++G  +C++P    FLC
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP----FLC  575

Query  593   GSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLHLENSDFSVGRNA  652
               DY A++++ E+   K+    YK+NN ++ +SQPDWE+  F F  L+LEN+ +S+GR+A
Sbjct  576   QKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDA  635

Query  653   NVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAED  712
             NV G+I+A +S+I +G+ TAYID+ +G+NITG+GFGFRQ++  G+S GE+ F G+++A++
Sbjct  636   NVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQN  695

Query  713   STIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKDN  772
             S I + DK+    +  + L+NT   I++GA VT+Q+ M+    I ++G L++TG P  +N
Sbjct  696   SKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENN  755

Query  773   KFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDESDLSQLSDRTSK  832
             K+ P+IY++D+ Y +T+D+A L A+N A V G+I S K ASI+FG D+    +L   T  
Sbjct  756   KYSPAIYMSDG-YNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  833   GLALGLLGGFDVSYRGSVNAPSASATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKK  892
              LA GLLGGFD SY G+++AP+ASA+M NT W++ G+SAL++LK+ +S++ F++  +N  
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSN-IENSG  873

Query  893   FHTLTVDELATSNSAYAMRTNLSES----DKLEVKKHLSGENNILLVDFLQKPTPEKQLN  948
             FHT+TV+ L ++N+A  MR++LS+S    DKL VK++L+G NN L VD+ +    +  LN
Sbjct  874   FHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLN  933

Query  949   IELVSAPKDTNENVFKASKQTIGFSDVTPVITTRETDDKITWSLTGYNTVANKEATRNAA  1008
             ++L++APK++N ++FKAS Q+IGFS+++PVI+T+E ++  TW+LTGY+   N  ++  A 
Sbjct  934   VDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAK  993

Query  1009  ALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVD  1068
             +  S +YKAFL EVNNLNKRMGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVD
Sbjct  994   SYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVD  1053

Query  1069  KKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHH  1128
             KKHELDGLDLFTG+T+T TDS AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHH
Sbjct  1054  KKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHH  1113

Query  1129  DNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQ  1188
             DNEY+ATFAGLGT+DYS+HS Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+
Sbjct  1114  DNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDR  1173

Query  1189  GMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEK  1248
             GM ++MKDKD+NPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEK
Sbjct  1174  GMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEK  1233

Query  1249  RIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1300
             RIKGEKD+R+LM+VGLNAEIRDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1234  RIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

15) espP in NC_002128


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1168 bits (4428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1312 (56%), Positives = 1024/1312 (79%), Gaps = 39/1312 (2%)

Query  1     MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSSY---SFASQ  57
             MNKIYSLKYSHITGGL+AVSEL+ +VS    G  + K IL++ +L+ + +SY   +FA+ 
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVS---VGTSRKKVILGI-ILSSIYGSYGETAFAAM  56

Query  58    MDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPFPDFSPVANKGSTTSI  117
             +DI+N+  RDY+D+AQN+G F++GATN++++ KDG  + +PE+P PDFS+V+NKG+TTSI
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  118   GGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVSRLDKFVVETRGATEGAD  177
             GGAYS+TATHN  +HH+++TQ+W++++YK +++  S  DF+V RL+KFVVET G TE+AD
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVHRLNKFVVETTGVTESAD  175

Query  178   ISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITPFNEVSYKPEMLNGSFVHI  237
             +SLS ++A+ RYGVNY+G  ++I+FRAG+G  S   NG+   F + +Y+P++L++S+ ++
Sbjct  176   FSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQ-NYNPDLLSASLFNL  234

Query  238   DDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHA-  296
             D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  G    +  + ++ N A 
Sbjct  235   D-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTV-GFISSTNIAW  291

Query  297   -AYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDI  355
               YS  N+  ++NLK++++  +++ G       +  L++       IK+KDL  +GGG +
Sbjct  292   TNYSLFNNILVNNLKKNFTNTMQLDG------KKQELSSI------IKDKDLSVSGGGVL  339

Query  356   LLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGD  415
              LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TVEWN++    DNLHKIG 
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  416   GTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAK  475
             GTLDV+ +Q  NLK G+G VIL+AEK+FN+IY+++G GTV++NA +ALS +    I+F++
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTR  459

Query  476   NGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYIYHGNINGNL---DVL  532
             NGGTLDLNGY+QSF+KIAATD+G+ +TN++ K+S LSL NT  Y+YHGN++GN+   +++
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  533   QHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAFSCSLPAPMRFLC  592
             +  +  ++N  LI+DG+VD  NDIS+RN+QL++QGHATEHAI+++G  +C++P    FLC
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP----FLC  575

Query  593   GSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLHLENSDFSVGRNA  652
               DY A++++ E+   K+    YK+NN ++ +SQPDWE+  F F  L+LEN+ +S+GR+A
Sbjct  576   QKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDA  635

Query  653   NVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAED  712
             NV G+I+A +S+I +G+ TAYID+ +G+NITG+GFGFRQ++  G+S GE+ F G+++A++
Sbjct  636   NVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQN  695

Query  713   STIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKDN  772
             S I + DK+    +  + L+NT   I++GA VT+Q+ M+    I ++G L++TG P  +N
Sbjct  696   SKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENN  755

Query  773   KFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDESDLSQLSDRTSK  832
             K+ P+IY++D+ Y +T+D+A L A+N A V G+I S K ASI+FG D+    +L   T  
Sbjct  756   KYSPAIYMSDG-YNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  833   GLALGLLGGFDVSYRGSVNAPSASATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKK  892
              LA GLLGGFD SY G+++AP+ASA+M NT W++ G+SAL++LK+ +S++ F++  +N  
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSN-IENSG  873

Query  893   FHTLTVDELATSNSAYAMRTNLSES----DKLEVKKHLSGENNILLVDFLQKPTPEKQLN  948
             FHT+TV+ L ++N+A  MR++LS+S    DKL VK++L+G NN L VD+ +    +  LN
Sbjct  874   FHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLN  933

Query  949   IELVSAPKDTNENVFKASKQTIGFSDVTPVITTRETDDKITWSLTGYNTVANKEATRNAA  1008
             ++L++APK++N ++FKAS Q+IGFS+++PVI+T+E ++  TW+LTGY+   N  ++  A 
Sbjct  934   VDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAK  993

Query  1009  ALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVD  1068
             +  S +YKAFL EVNNLNKRMGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVD
Sbjct  994   SYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVD  1053

Query  1069  KKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHH  1128
             KKHELDGLDLFTG+T+T TDS AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHH
Sbjct  1054  KKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHH  1113

Query  1129  DNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQ  1188
             DNEY+ATFAGLGT+DYS+HS Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+
Sbjct  1114  DNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDR  1173

Query  1189  GMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEK  1248
             GM ++MKDKD+NPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEK
Sbjct  1174  GMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEK  1233

Query  1249  RIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1300
             RIKGEKD+R+LM+VGLNAEIRDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1234  RIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

16) espP in NC_013010


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1168 bits (4428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1312 (56%), Positives = 1024/1312 (79%), Gaps = 39/1312 (2%)

Query  1     MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSSY---SFASQ  57
             MNKIYSLKYSHITGGL+AVSEL+ +VS    G  + K IL++ +L+ + +SY   +FA+ 
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVS---VGTSRKKVILGI-ILSSIYGSYGETAFAAM  56

Query  58    MDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPFPDFSPVANKGSTTSI  117
             +DI+N+  RDY+D+AQN+G F++GATN++++ KDG  + +PE+P PDFS+V+NKG+TTSI
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  118   GGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVSRLDKFVVETRGATEGAD  177
             GGAYS+TATHN  +HH+++TQ+W++++YK +++  S  DF+V RL+KFVVET G TE+AD
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVHRLNKFVVETTGVTESAD  175

Query  178   ISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITPFNEVSYKPEMLNGSFVHI  237
             +SLS ++A+ RYGVNY+G  ++I+FRAG+G  S   NG+   F + +Y+P++L++S+ ++
Sbjct  176   FSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQ-NYNPDLLSASLFNL  234

Query  238   DDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHA-  296
             D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  G    +  + ++ N A 
Sbjct  235   D-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTV-GFISSTNIAW  291

Query  297   -AYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDI  355
               YS  N+  ++NLK++++  +++ G       +  L++       IK+KDL  +GGG +
Sbjct  292   TNYSLFNNILVNNLKKNFTNTMQLDG------KKQELSSI------IKDKDLSVSGGGVL  339

Query  356   LLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGD  415
              LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TVEWN++    DNLHKIG 
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  416   GTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAK  475
             GTLDV+ +Q  NLK G+G VIL+AEK+FN+IY+++G GTV++NA +ALS +    I+F++
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTR  459

Query  476   NGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYIYHGNINGNL---DVL  532
             NGGTLDLNGY+QSF+KIAATD+G+ +TN++ K+S LSL NT  Y+YHGN++GN+   +++
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  533   QHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAFSCSLPAPMRFLC  592
             +  +  ++N  LI+DG+VD  NDIS+RN+QL++QGHATEHAI+++G  +C++P    FLC
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP----FLC  575

Query  593   GSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLHLENSDFSVGRNA  652
               DY A++++ E+   K+    YK+NN ++ +SQPDWE+  F F  L+LEN+ +S+GR+A
Sbjct  576   QKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDA  635

Query  653   NVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAED  712
             NV G+I+A +S+I +G+ TAYID+ +G+NITG+GFGFRQ++  G+S GE+ F G+++A++
Sbjct  636   NVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQN  695

Query  713   STIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKDN  772
             S I + DK+    +  + L+NT   I++GA VT+Q+ M+    I ++G L++TG P  +N
Sbjct  696   SKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENN  755

Query  773   KFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDESDLSQLSDRTSK  832
             K+ P+IY++D+ Y +T+D+A L A+N A V G+I S K ASI+FG D+    +L   T  
Sbjct  756   KYSPAIYMSDG-YNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  833   GLALGLLGGFDVSYRGSVNAPSASATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKK  892
              LA GLLGGFD SY G+++AP+ASA+M NT W++ G+SAL++LK+ +S++ F++  +N  
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSN-IENSG  873

Query  893   FHTLTVDELATSNSAYAMRTNLSES----DKLEVKKHLSGENNILLVDFLQKPTPEKQLN  948
             FHT+TV+ L ++N+A  MR++LS+S    DKL VK++L+G NN L VD+ +    +  LN
Sbjct  874   FHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLN  933

Query  949   IELVSAPKDTNENVFKASKQTIGFSDVTPVITTRETDDKITWSLTGYNTVANKEATRNAA  1008
             ++L++APK++N ++FKAS Q+IGFS+++PVI+T+E ++  TW+LTGY+   N  ++  A 
Sbjct  934   VDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAK  993

Query  1009  ALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVD  1068
             +  S +YKAFL EVNNLNKRMGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVD
Sbjct  994   SYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVD  1053

Query  1069  KKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHH  1128
             KKHELDGLDLFTG+T+T TDS AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHH
Sbjct  1054  KKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHH  1113

Query  1129  DNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQ  1188
             DNEY+ATFAGLGT+DYS+HS Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+
Sbjct  1114  DNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDR  1173

Query  1189  GMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEK  1248
             GM ++MKDKD+NPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEK
Sbjct  1174  GMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEK  1233

Query  1249  RIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1300
             RIKGEKD+R+LM+VGLNAEIRDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1234  RIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

17) espP in NC_017907


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1168 bits (4428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 727/1312 (56%), Positives = 1024/1312 (79%), Gaps = 39/1312 (2%)

Query  1     MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSSY---SFASQ  57
             MNKIYSLKYSHITGGL+AVSEL+ +VS    G  + K IL++ +L+ + +SY   +FA+ 
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVS---VGTSRKKVILGI-ILSSIYGSYGETAFAAM  56

Query  58    MDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPFPDFSPVANKGSTTSI  117
             +DI+N+  RDY+D+AQN+G F++GATN++++ KDG  + +PE+P PDFS+V+NKG+TTSI
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  118   GGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVSRLDKFVVETRGATEGAD  177
             GGAYS+TATHN  +HH+++TQ+W++++YK +++  S  DF+V RL+KFVVET G TE+AD
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVHRLNKFVVETTGVTESAD  175

Query  178   ISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITPFNEVSYKPEMLNGSFVHI  237
             +SLS ++A+ RYGVNY+G  ++I+FRAG+G  S   NG+   F + +Y+P++L++S+ ++
Sbjct  176   FSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQ-NYNPDLLSASLFNL  234

Query  238   DDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHA-  296
             D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  G    +  + ++ N A 
Sbjct  235   D-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTV-GFISSTNIAW  291

Query  297   -AYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDI  355
               YS  N+  ++NLK++++  +++ G       +  L++       IK+KDL  +GGG +
Sbjct  292   TNYSLFNNILVNNLKKNFTNTMQLDG------KKQELSSI------IKDKDLSVSGGGVL  339

Query  356   LLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGD  415
              LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TVEWN++    DNLHKIG 
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  416   GTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGGEYNGIFFAK  475
             GTLDV+ +Q  NLK G+G VIL+AEK+FN+IY+++G GTV++NA +ALS +    I+F++
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTR  459

Query  476   NGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYIYHGNINGNL---DVL  532
             NGGTLDLNGY+QSF+KIAATD+G+ +TN++ K+S LSL NT  Y+YHGN++GN+   +++
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  533   QHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAFSCSLPAPMRFLC  592
             +  +  ++N  LI+DG+VD  NDIS+RN+QL++QGHATEHAI+++G  +C++P    FLC
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP----FLC  575

Query  593   GSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLHLENSDFSVGRNA  652
               DY A++++ E+   K+    YK+NN ++ +SQPDWE+  F F  L+LEN+ +S+GR+A
Sbjct  576   QKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDA  635

Query  653   NVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQGETLFTGGITAED  712
             NV G+I+A +S+I +G+ TAYID+ +G+NITG+GFGFRQ++  G+S GE+ F G+++A++
Sbjct  636   NVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQN  695

Query  713   STIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISGNLSMTGNPDKDN  772
             S I + DK+    +  + L+NT   I++GA VT+Q+ M+    I ++G L++TG P  +N
Sbjct  696   SKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENN  755

Query  773   KFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDESDLSQLSDRTSK  832
             K+ P+IY++D+ Y +T+D+A L A+N A V G+I S K ASI+FG D+    +L   T  
Sbjct  756   KYSPAIYMSDG-YNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  833   GLALGLLGGFDVSYRGSVNAPSASATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKK  892
              LA GLLGGFD SY G+++AP+ASA+M NT W++ G+SAL++LK+ +S++ F++  +N  
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSN-IENSG  873

Query  893   FHTLTVDELATSNSAYAMRTNLSES----DKLEVKKHLSGENNILLVDFLQKPTPEKQLN  948
             FHT+TV+ L ++N+A  MR++LS+S    DKL VK++L+G NN L VD+ +    +  LN
Sbjct  874   FHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLN  933

Query  949   IELVSAPKDTNENVFKASKQTIGFSDVTPVITTRETDDKITWSLTGYNTVANKEATRNAA  1008
             ++L++APK++N ++FKAS Q+IGFS+++PVI+T+E ++  TW+LTGY+   N  ++  A 
Sbjct  934   VDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAK  993

Query  1009  ALFSVDYKAFLNEVNNLNKRMGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVD  1068
             +  S +YKAFL EVNNLNKRMGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVD
Sbjct  994   SYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVD  1053

Query  1069  KKHELDGLDLFTGFTVTHTDSSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHH  1128
             KKHELDGLDLFTG+T+T TDS AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHH
Sbjct  1054  KKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHH  1113

Query  1129  DNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQ  1188
             DNEY+ATFAGLGT+DYS+HS Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+
Sbjct  1114  DNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDR  1173

Query  1189  GMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEK  1248
             GM ++MKDKD+NPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEK
Sbjct  1174  GMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEK  1233

Query  1249  RIKGEKDSRMLMSVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1300
             RIKGEKD+R+LM+VGLNAEIRDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1234  RIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

18) pet in NC_017627


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1165 bits (4419),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 737/1316 (57%), Positives = 1016/1316 (78%), Gaps = 52/1316 (3%)

Query  1     MNKIYSIKYSAATGGLIAVSELAKKVICKTNRK--ISAALLSLAVISYTNIIYAANMDIS  58
             MNKIYS+KYS  TGGL+AVSEL++KV   T+RK  I + +LS    SY +  +AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  59    KAWARDYLDLAQNKGVFQPGSTHVKIKLKDGTDFSFPALPVPDFSSATANGAATSIGGAY  118
             + W+RDYLDLAQN+G F+PG+T+V++ +KDG  F FP LPVPDFS+ + +GA+TSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  119   AVTVAHNAKNKSSANYQTYGSTQYTQINRMTTGNDFSIQRLNKYVVETRGADTSFNYNEN  178
             +VT +HN+ +  +   Q+ + T Y   NR+++G DFS++RLNK+VVET G   S +++ +
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSG-DFSVHRLNKFVVETTGVTESADFSLS  179

Query  179   NQNIIDRYGVDVGNGKKEIIGFRVGSGNTT--FSGIKT--SQTYQADLLSASLFHITNLR  234
              ++ + RYGV+  NGK +IIGFR G+G T+  ++G +   +Q Y++DLLSASLF++    
Sbjct  180   PEDAMKRYGVNY-NGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKN  238

Query  235   ANTVGGNKVEYENDSYFTNLTTNGDSGSGVYVFDNKEDKWVLLGTTH--GIIGNGKTQKT  292
              + +  N+  + N + F      GDSGSG Y++D+ ++KWV+ G T   G+I++ +   T
Sbjct  239   KSYIYTNRTPFKNSPIF------GDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWT  292

Query  293   YVTPFDSKTTNELKQLFIQNVNIDnntatigggkitignttQDIEKNKNNQNKDLVFSGG  352
               + F++   N+LK+ F + +++D                 +  E +   ++KDL  SGG
Sbjct  293   NYSLFNNILVNNLKKNFTNTMQLDG----------------KKQELSSIIKDKDLSVSGG  336

Query  353   GKISLKENLDLGYGGFIFDENKKYTVSAEGNNNVTFKGAGIDIGKGSTVDWNIKYASNDA  412
             G ++LK++ DLG GG+IFD N+ Y V + ++   ++KGAGIDI++ +TV+WN+K  + D 
Sbjct  337   GVLTLKQDTDLGIGGLIFDKNQTYKVYGKDK---SYKGAGIDIDNNTTVEWNVKGVAGDN  393

Query  413   LHKIGEGSLNVIQAQNTNLKTGNGTVILGAQKTFNNIYVAGGPGTVQLNAENALGEGDYA  472
             LHKIG G+L+V  AQ  NLK GNGTVIL+A+K+FN+IY+AGG GTV++NA +AL+E++ +
Sbjct  394   LHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNG  453

Query  473   GIFFTENGGKLDLNGHNQTFKKIAATDSGTTITNSNTTKESVLSVNNQNNYIYHGNVDGN  532
              I+FT NGG LDLNG +Q+F+KIAATD+GTT+TNSN  K+S LS+ N + Y+YHGNV GN
Sbjct  454   EIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGN  512

Query  533   VRLEHHLDTKQ---DNARLILDGDIQA-NSISIKNAPLVMQGHATDHAIFRTTKTNNCP-  587
             + ++H ++T Q   +NA LI+DG ++  N IS++NA L +QGHAT+HAIF+  + NNCP 
Sbjct  513   ISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN-NNCPI  571

Query  588   EFLCGVDWVTRIKNAENSVNQKNKTTYKSNNQVSDLSQPDWETRKFRFDNLNIEDSSLSI  647
              FLC  D  + IK+ E++VN++ +T YKSNNQ++ +SQPDWE+RKF F +LN+E+++LSI
Sbjct  572   PFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSI  631

Query  648   ARNADVEGNIQAKNSVINIGDKTAYIDLYSGKNITGAGFTFRQDIKSGDSIGESKFTGGI  707
             +R+A+V G+I+AKNS I +G+KTAYID++SG+NITG GF FRQ+++SGDS GES F G++
Sbjct  632   GRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSL  691

Query  708   MATDGSISIGDKAIVTLNTVSSLDRTALTIHKGANVTASSSLFTTSNIKSGGDLTLTGAT  767
              A ++ I++GDK+ VT+    SL  T L I+KGA VTA + ++    I  +G LTLTG+ 
Sbjct  692   SAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTP  751

Query  768   ESTGEITPSMFYAAGGYELTEDGANFTAKNQASVTGDIKSEKAAKLSFGSAD-KDNSATR  826
                   +P++ Y ++GY++TEDGA + A+N A V G+IKS+K A + FG  + K+++  +
Sbjct  752   TENNKYSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDK  810

Query  827   YSQFALA--MLDGFDTSYQGSIKAAQSSLAMNNALWKVTGNSELKKLNSTGSMVLFNG-G  883
              ++ +LA  +L+GFDTSY G+I A+ +S +M N+LW+V G+S L+ L++ +S++LF+   
Sbjct  811   TTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIE  870

Query  884   KNIFNTLTVDELTTSNSAFVMRTN----TQQADQLIVKNKLEGANNLLLVDFIEKKGNDK  939
             ++ F+T+TV+ L ++N+A +MR++     +Q+D+LIVKN+L G+NN L VD I+K GN++
Sbjct  871   NSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVD-IQKVGNNN  929

Query  940   NGLNIDLVKAPENTSKDVFKTETQTIGFSDVTPEIKQQEKDGKSVWTLTGYKTVANADAA  999
             +GLN+DL+ AP  ++K++FK+ TQ+IGFS+++P I  +E +  + WTLTGYK   N+ ++
Sbjct  930   SGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASS  989

Query  1000  KKATSLMSGGYKAFLAEVNNLNKRMGDLRDINGEAGAWARIMSGTGSAGGGFSDNYTHVQ  1059
               A S MSG YKAFL+EVNNLNKRMGDLRD NGEAGAWARIMSG+GSA+GG+SDNYTHVQ
Sbjct  990   GAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQ  1049

Query  1060  VGADNKHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGK  1119
             +G D+KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+K
Sbjct  1050  IGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISK  1109

Query  1120  YVHHDNEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFS  1179
             YVHHDNEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F 
Sbjct  1110  YVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFD  1169

Query  1180  WKDQGMNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDA  1239
             W+D+GM++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDA
Sbjct  1170  WQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDA  1229

Query  1240  SGEKRIKGEKDGRMLMNVGLNAEIRDNVRFGLEFEKSAFGKYNVDNAINANFRYSF  1295
             SGEKRIKGEKDGR+LMNVGLNAEIRDN+RFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1230  SGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

19) espC in NC_011601


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1136 bits (4309),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 715/1329 (54%), Positives = 1015/1329 (77%), Gaps = 68/1329 (5%)

Query  1     MNKIYALKYCHATGGLIAVSELASRVMKKAARGS-LLALFNLSLYGAFLSASQAAQLNID  59
             MNKIY+LKY H TGGL+AVSEL+ +V   ++R   +L+++  S+YG++  ++ AA L+I+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  60    NVWARDYLDLAQNKGVFKAGATNVSIQLKNGQTFNFPNVPIPDFSPASNKGATTSIGGAY  119
             N+W+RDYLDLAQN+G F++GATNV + +K+G+ F+FP++P+PDFS+ SNKGATTSIGGAY
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  120   SVTATHNGTTHHAISTQNWGQSSYKYIDRMTNGDFAVTRLDKFVVETTGVKNSVDFSLNS  179
             SVTATHNGT HHAI+TQ+W+Q++YK  +R+++GDF+V RL+KFVVETTGV +S DFSL++
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  180   HDALERYGVEINGEKKIIGFRVGAGTTYTVQNGNTYSTGQVYNPLLLSASMFQLNWDNKR  239
             +DA+ RYGV+ NG  +IIGFR GAGTT T+ NG+ Y  GQ YNP LLSAS+F+L+W NK 
Sbjct  181   EDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKNKS  240

Query  240   -PYNNTTPFYNETTGGDSGSGFYLYDNVKKEWVMLG--TLFGIASSGADVWSILNQYDEN  296
               Y N TPF N    GDSGSG YLYD+ ++ WV  G  +  G+ SS    W+  + +++ 
Sbjct  241   YIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFNNI  300

Query  297   TVNGLKNKFTQKVQLNNNTMSLNSDSFTLAGNNTAVEKNNNNYKDLSFSGGGSINFDNDV  356
              VN LK++FT+ +QL+ +   L           +++ K+    KDLS SGGG + + +D 
Sbjct  301   LVNNLKKNFTNTMQLDGKKQEL-----------SSIIKD----KDLSVSGGGVLTLKQDT  345

Query  357   NIGSGGLIFDAGHHYTVTGNNKTFKGAGLDIGDNTTVDWNVKGVVGDNLHKIGAGTLNVN  416
             ++G GGLIFD  + Y V G++K++KGAG+DI++NTTV+WNVKGV GDNLHKIG+GTL+V+
Sbjct  346   DLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVK  405

Query  417   VSQGNNLKTGDGLVVLNSANAFDNIYMASGHGVVKINHSAALNQNNDYRGIFFTENGGTL  476
             ++QGNNLK G+G V+L++ +AF++IYMA+G G VKIN   AL+++ +   I+FT NGGTL
Sbjct  406   IAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGN-GEIYFTRNGGTL  464

Query  477   DLNGYDQSFNKIAATDIGALITNSAVQKAVLSVNNQSNYMYHGSVSGNTEINHQFDT---  533
             DLNGYDQSF+KIAATD G+ +TNS V+++ LS+ N   YMYHG+VSGN  INH ++T   
Sbjct  465   DLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINTTQQ  524

Query  534   QKNNSRLILDGNVDITNDINIKNSQLTMQGHATSHAVFREGGVTCMLPGVICEKDYVSGI  593
             ++NN+ LI+DG+VDI NDI+++N+QLT+QGHAT HA+F+EG   C +P  +C+KDY ++I
Sbjct  525   HNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP-FLCQKDYSAAI  583

Query  594   QQQENSAnknnntdyktnnQVSSFEQPDWENRLFKFKTLNLINSDFIVGRNAIVVGDISA  653
             ++QE++ NK  NT+YK+NNQ++SF QPDWE+R F+F+ LNL N+ + +GR+A V G+I A
Sbjct  584   KDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGHIEA  643

Query  654   NNSTLSLSGKDTKVHIDMYDGKNITGDGFGFRQDIKDGVSVSPESSSYFGNVTLNNHSLL  713
             +NS + L+ K +   IDM+ G+NITG+GFGFRQ+++ G S +  S               
Sbjct  644   KNSQIVLGNKTA--YIDMFSGRNITGEGFGFRQQLRSGDSAGESS---------------  686

Query  714   DIGNKFTGGIEAYDSSVSVTSQNAVFDRVG--SFVNSSLTLEKGAKLTAQGGIFSTGAVD  771
                  F G++ A +S ++V  +++V    G  S++N+ L ++KGA +TAQG ++   A++
Sbjct  687   -----FNGSLSAQNSKITVGDKSTV-TMTGALSLINTDLIINKGATVTAQGKMYVDKAIE  740

Query  772   VKENASLILTGTPSAQKQEYYSPVISTTEGINLGDK-ASLSVKNMGYLSSDIHAGTTAAT  830
             +    +L  T T + +    YSP I  ++G N+ +  A+L  +N + ++++I ++  A+ 
Sbjct  741   LAGTLTLTGTPTENNK----YSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASI  796

Query  831   I------NLGDGDAETDSPLFSSLMKGYNAVLSGNITGEQSTVNMNNALWYSDGNSTIGT  884
             +      + ++ D  T++PL ++L+ G+++  +G I +  ++ +M N+LW  +G+S++ +
Sbjct  797   LFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS  856

Query  885   LKSTGGRVELGG--GKDFATLRVKELNANNATFLMHTN----NSQADQLNVTNKLLGSNN  938
             LK+ ++ + ++     +F T+ V+ L+A N++ +M+++     +Q+D+L V N+L GSNN
Sbjct  857   LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNN  916

Query  939   TVLVDF--LNKPASEMNVTLITAPKGSDEKTFTAGTQQIGFSNVTPVISTEKTDDATKWM  996
             ++ VD+  + +  S +NV LITAPKGS+   F A+TQ IGFSN++PVIST   ++ T W 
Sbjct  917   SLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWT  976

Query  997   LTGYQTVSDAGASKTATDFMASGYKSFLTEVNNLNKRMGDLRDTQGDAGVWARIMNGTGS  1056
             LTGY+   ++++S +A  +M++ YK+FLTEVNNLNKRMGDLRDT+G+AG WARIM+G+GS
Sbjct  977   LTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGS  1036

Query  1057  ADGGYSDNYTHVQIGADRKHELDGVDLFTGALLTYTDSNASSHAFSGKTKSVGGGLYASA  1116
             A GGYSDNYTHVQIG D+KHELDG+DLFTG  +TYTDS+ASS+AFSGKTKSVG+GLYASA
Sbjct  1037  ASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASA  1096

Query  1117  LFDSGAYFDLIGKYLHHDNQYTASFASLGTKDYSSHSWYAGAEVGYRYHLSEESWVEPQM  1176
             +FDSGAY+DLI+KY+HHDN+Y+A+FA+LGTKDYSSHS Y GAE GYRYH++E+SW+EPQ 
Sbjct  1097  IFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQA  1156

Query  1177  ELVYGSVSGKSFSWEDRGMALSMKDKDYNPLIGRTGVDVGRTFSGDDWKITARAGLGYQF  1236
             ELVYG+VSGK F W+DRGM+++MKDKD+NPLIGRTGVDVG++FSG DWK+TARAGLGYQF
Sbjct  1157  ELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQF  1216

Query  1237  DLLANGETVLRDASGEKRFEGEKDSRMLMNVGMNAEIKDNMRFGLELEKSAFGKYNVDNA  1296
             DL+ANGETVLRDASGEKR+ GEKD+R+LMNVG+NAEI+DN+RFGLE+EKSAFGKYNVDNA
Sbjct  1217  DLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNA  1276

Query  1297  INANFRYSF  1305
             INANFRYSF
Sbjct  1277  INANFRYSF  1285

20) ECABU_c32840 in NC_017631


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1128 bits (4279),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1311 (55%), Positives = 1001/1311 (77%), Gaps = 42/1311 (3%)

Query  1     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  55
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  56    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  115
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  116   sVTVAHNKKNPQAAETQVYAQSSYKVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  175
             SVT +HN  + +A  TQ   Q++YK  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  176   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  234
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  235   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  291
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  292   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  351
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  352   NVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  411
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  412   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  471
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  472   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  531
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  532   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSTANHCSLVFLCG  590
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+   N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  591   TDWVTVLKETESSYNKKFNSDHKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  650
              D  + +K+ ES+ NK++N++ KSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  651   VEGNISANKSAITIGDKNAYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  710
             V G+I A++S I +G+K AYID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  711   QIAIGDQAVVTLNGATFLNNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  770
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  771   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  829
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  830   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  888
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  889   TTLTVDNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  944
              T+TV+ L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  945   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1004
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1005  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIMSGTGSAGGGFSDNYTHVQVGADN  1064
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARIMSG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1065  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1124
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1125  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1184
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1185  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1244
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1245  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1295
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

21) sat in NC_004431


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1128 bits (4278),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 716/1311 (55%), Positives = 1002/1311 (77%), Gaps = 42/1311 (3%)

Query  5     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  59
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  60    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  119
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  120   sVTVAHNKKNPQAAETQVYAQSSYRVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  179
             SVT +HN  + +A  TQ   Q++Y+  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  180   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  238
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  239   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  295
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  296   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  355
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  356   DVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  415
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  416   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  475
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  476   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  535
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  536   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSSANHCSLVFLCG  594
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+ + N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  595   TDWVTVLKETESSYNKKFNSDYKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  654
              D  + +K+ ES+ NK++N++YKSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  655   VEGNISANKSAITIGDKNVYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  714
             V G+I A++S I +G+K  YID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  715   QIAIGDQAVVTLNGATFLDNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  774
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  775   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  833
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  834   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  892
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  893   TTLTVNNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  948
              T+TVN L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  949   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1008
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1009  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIISGTGSAGGGFSDNYTHVQVGADN  1068
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARI+SG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1069  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1128
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1129  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1188
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1189  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1248
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1249  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1299
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

22) sat in NC_017646


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1128 bits (4279),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1311 (55%), Positives = 1001/1311 (77%), Gaps = 42/1311 (3%)

Query  1     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  55
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  56    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  115
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  116   sVTVAHNKKNPQAAETQVYAQSSYKVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  175
             SVT +HN  + +A  TQ   Q++YK  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  176   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  234
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  235   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  291
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  292   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  351
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  352   NVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  411
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  412   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  471
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  472   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  531
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  532   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSTANHCSLVFLCG  590
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+   N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  591   TDWVTVLKETESSYNKKFNSDHKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  650
              D  + +K+ ES+ NK++N++ KSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  651   VEGNISANKSAITIGDKNAYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  710
             V G+I A++S I +G+K AYID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  711   QIAIGDQAVVTLNGATFLNNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  770
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  771   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  829
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  830   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  888
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  889   TTLTVDNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  944
              T+TV+ L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  945   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1004
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1005  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIMSGTGSAGGGFSDNYTHVQVGADN  1064
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARIMSG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1065  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1124
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1125  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1184
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1185  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1244
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1245  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1295
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

23) sat in NC_011751


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1128 bits (4278),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 716/1311 (55%), Positives = 1002/1311 (77%), Gaps = 42/1311 (3%)

Query  5     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  59
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  60    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  119
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  120   sVTVAHNKKNPQAAETQVYAQSSYRVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  179
             SVT +HN  + +A  TQ   Q++Y+  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  180   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  238
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  239   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  295
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  296   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  355
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  356   DVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  415
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  416   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  475
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  476   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  535
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  536   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSSANHCSLVFLCG  594
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+ + N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  595   TDWVTVLKETESSYNKKFNSDYKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  654
              D  + +K+ ES+ NK++N++YKSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  655   VEGNISANKSAITIGDKNVYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  714
             V G+I A++S I +G+K  YID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  715   QIAIGDQAVVTLNGATFLDNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  774
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  775   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  833
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  834   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  892
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  893   TTLTVNNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  948
              T+TVN L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  949   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1008
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1009  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIISGTGSAGGGFSDNYTHVQVGADN  1068
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARI+SG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1069  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1128
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1129  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1188
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1189  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1248
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1249  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1299
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

24) sat in NC_017652


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1127 bits (4275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1311 (55%), Positives = 1001/1311 (77%), Gaps = 42/1311 (3%)

Query  5     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  59
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  60    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  119
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  120   sVTVAHNKKNPQAAETQVYAQSSYKVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  179
             SVT +HN  + +A  TQ   Q++YK  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  180   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  238
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  239   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  295
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  296   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  355
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  356   NVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  415
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  416   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  475
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  476   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  535
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  536   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSTANHCSLVFLCG  594
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+   N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  595   TDWVTVLKETESSYNKKFNSDHKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  654
              D  + +K+ ES+ NK++N++ KSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  655   VEGNISANKSAITIGDKNAYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  714
             V G+I A++S I +G+K AYID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  715   QIAIGDQAVVTLNGATFLNNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  774
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  775   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  833
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  834   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  892
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  893   TTLTVDNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  948
              T+TV+ L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  949   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1008
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1009  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIMSGTGSAGGGFSDNYTHVQVGADN  1068
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARIMSG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1069  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1128
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1129  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1188
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1189  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1248
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1249  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1299
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

25) sat in NC_017651


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1127 bits (4275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 717/1311 (55%), Positives = 1001/1311 (77%), Gaps = 42/1311 (3%)

Query  5     MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAV-----AGTVNAANIDIS  59
             MNKIYSLKYS  TGGL+AVSEL+++VS  T+RK V   + L+      + T  AA +DI+
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFAAMLDIN  60

Query  60    NVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPDFsgaaasgaataiggsy  119
             N+W+RDYLDLAQN+G F+PGAT+V + +K+G  F F +L++PDFS+ +  GA+T+IGG+Y
Sbjct  61    NIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGGAY  120

Query  120   sVTVAHNKKNPQAAETQVYAQSSYKVVDRRNSNDFEIQRLNKFVVETVGATPAETNPTTY  179
             SVT +HN  + +A  TQ   Q++YK  +R +S DF ++RLNKFVVET G T +   + + 
Sbjct  121   SVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSLSP  180

Query  180   SDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKISTNSAYSHDLLSASLFEVTQWD-  238
              DA+ RYG V  +G  +IIGFRAG+G TS I    +      Y+ DLLSASLF++ +W  
Sbjct  181   EDAMKRYG-VNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNL-DWKN  238

Query  239   -SYGMMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIASVNGDQLTWI--T  295
              SY   IY N   F+N  IFGDSGSG+YLYD+  +KWV+ G T  ++ +++ +++W   +
Sbjct  239   KSY---IYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYS  295

Query  296   KYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKITKDKDIVFTNGG  355
              +N+ LV++LK  +++ ++L+G++  + +                  I KDKD+  + GG
Sbjct  296   LFNNILVNNLKKNFTNTMQLDGKKQELSS------------------IIKDKDLSVSGGG  337

Query  356   NVLFKDNLDFGSGGIIFDEGHEYNINGQGFTFKGAGIDIGKESIVNWNALYSSDDVLHKI  415
              + +K++ D+G GG+IFD  + Y++ G++ ++KGAGIDI++++ V+WN    ++D LHKI
Sbjct  338   VLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKI  397

Query  416   GPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVILNKDNSLGNDQYAGIFF  475
             G+GTL+V+  QG N+KIG+G VIL+ E +FN+IY+A+G+G V +N  ++L++   + I+F
Sbjct  398   GSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGNGEIYF  457

Query  476   TKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTTKEAVLAINNEDSYIYHGNINGNIKLT  535
             T+ GGTLDLNG +Q+F +IAATD GTT+TNS+  K++ L++ N D+Y+YHGN++GNI + 
Sbjct  458   TRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNV-KQSTLSLTNTDAYMYHGNVSGNISIN  516

Query  536   HNINS-QDKKTNAKLILDGSVNTKNDVEVSNASLTMQGHATEHAIFRSTANHCSLVFLCG  594
             H IN+ Q+ + NA+LI+DGSV+ KND+ V NA LT+QGHATEHAIF+   N+C++ FLC 
Sbjct  517   HIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIPFLCQ  576

Query  595   TDWVTVLKETESSYNKKFNSDHKSNNQQTSFDQPDWKTGVFKFDTLHLNNADFSISRNAN  654
              D  + +K+ ES+ NK++N++ KSNNQ +SF QPDW +  F+F  L+L+NA +SI+R+AN
Sbjct  577   KDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDAN  636

Query  655   VEGNISANKSAITIGDKNAYIDNLAGKNITNNGFDFKQTISTNLSIGETKFTGGITAHNS  714
             V G+I A++S I +G+K AYID ++G+NIT +GF+F+Q + +  S GE+ F G+++A+NS
Sbjct  637   VKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSAGESSFNGSLSAQNS  696

Query  715   QIAIGDQAVVTLNGATFLNNTPISIDKGAKVIAQNSMFTTKGIDISGELTMMGIPEQNSK  774
             +I++GD++ VT+ GA  L NT + I+KGA V AQ  M+  K+I+++G LT+ G P +N+K
Sbjct  697   KITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIELAGTLTLTGTPTENNK  756

Query  775   TVTPGLHYAADGFRLSGGNANFIARNMASVTGNIYADDAATITLGQPE-TETPTISSAYQ  833
               +P++ Y +DG+ ++ + A + A+N A V GNI +D  A+I +G  +  E     ++  
Sbjct  757   -YSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHT  814

Query  834   AWAETLLYGFDTAYRGAITAPKATVSMNNAIWHLNSQSSINRLETKDSMVRFTG-DNGKF  892
             + A  LL GFDT+Y G+I AP A+ SM N++W++N+QS+++ L T+DS++ F+  +N+ F
Sbjct  815   PLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGF  874

Query  893   TTLTVDNLTIDDSAFVLRANLAQA----DQLVVnkslsgknnlllVDFIEKNGNSNGLNI  948
              T+TV+ L   ++A ++RA+L+Q+    D+L+V++ L+G NN L VD+     N++GLN+
Sbjct  875   HTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNV  934

Query  949   DLVSAPKGTAVDVFKATTRSIGFSDVTPVIEQKNDTDKATWTLIGYKSVANADAAKKATL  1008
             DL++APKG+  ++FKA+T++IGFS+++PVI  K+D + +TWTL GYK   N+ ++  A  
Sbjct  935   DLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKS  994

Query  1009  LMSGGYKAFLAEVNNLNKRMGDLRDINGESGAWARIMSGTGSAGGGFSDNYTHVQVGADN  1068
              MSG YKAFL+EVNNLNKRMGDLRD NGE+GAWARIMSG+GSA+GG+SDNYTHVQ+G D+
Sbjct  995   YMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDK  1054

Query  1069  KHELDGLDLFTGVTMTYTDSHAGSDAFSGETKSVGAGLYASAMFESGAYIDLIGKYVHHD  1128
             KHELDGLDLFTG+TMTYTDSHA+S+AFSG TKSVGAGLYASA+F+SGAYIDLI+KYVHHD
Sbjct  1055  KHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHD  1114

Query  1129  NEYTATFAGLGTRDYSSHSWYAGAEVGYRYHVTDSAWIEPQAELVYGAVSGKQFSWKDQG  1188
             NEY+ATFAGLGT+DYSSHS Y GAE GYRYHVT+ +WIEPQAELVYGAVSGK+F W+D+G
Sbjct  1115  NEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRG  1174

Query  1189  MNLTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1248
             M++TMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR
Sbjct  1175  MSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKR  1234

Query  1249  IKGEKDGRMLMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1299
             IKGEKDGR+LMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF
Sbjct  1235  IKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

26) ECSF_4014 in NC_013654


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1116 bits (4231),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 694/1331 (53%), Positives = 985/1331 (75%), Gaps = 68/1331 (5%)

Query  1     MNRIYSLKYCHLTQGLIAVSELASRVSSKTGRK--LLAIFIVSAL-SYGAAEYACAAQMD  57
             MN+IYSLKY H+T GL+AVSEL+ +VS  T+RK  +L+I++ S   SYG + +A  A +D
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIYGSYGETAFA--AMLD  58

Query  58    TRNFWIRDYLDLAQNKGAFQPGAYGVKTPLKNGGEFSFPEVTIPDFSPVSAKGATTAIGN  117
               N+W RDYLDLAQN+G F+PGA  V+  +K+G  F FPE+ +PDFS+VS KGATT+IG 
Sbjct  59    INNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIGG  118

Query  118   AYSVTASHNGTIHHAIKTQTWGQSDYHYVDRVTKGDFAVQRLDKFVVETAGATEHADFNL  177
             AYSVTA+HNGT HHAI TQ+W+Q+ Y   +RV+ GDF+V+RL+KFVVET+G TE ADF+L
Sbjct  119   AYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFSL  178

Query  178   SAAEALERYGIEFNGKKQIIGFRVGAGATGVT----SYGVGQAYNPLLRSASMFQLNWNN  233
             S+ +A+ RYG+++NGK QIIGFR GAG+T+       Y  GQ YNP L SAS+F+L+W+N
Sbjct  179   SPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWKN  238

Query  234   M-LATNNTGGFYNEVTGGDSGSGFYLYDNQRKKWVILGTTYGKAF--SSKDTWAFFSRYD  290
                   N   F N    GDSGSG YLYD++++KWV+ G T   +F  S++ +W+ +S ++
Sbjct  239   KSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSLFN  298

Query  291   QNTVDTLKNTFTQEVNLNGQKMTVNNKNIAINDKITAIELTKSNKNKDLKFHGGGSIELT  350
             +  V+ LK+ FT+ ++L+G+K                 EL+   K+KDL   GGG + L 
Sbjct  299   NILVNNLKKNFTNTMQLDGKKQ----------------ELSSIIKDKDLSVSGGGVLTLK  342

Query  351   DNLNSGTGGLIFDEGQHYSVIGKDKAYKGAGVEIGKDTVVDWSVKGEANDNLHKTGAGTL  410
             ++ + G GGLIFD  Q Y V GKDK+YKGAG++I+++T V+W+VKG A DNLHK G+GTL
Sbjct  343   QDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSGTL  402

Query  411   NVNVAQGNNLKTGDGTVFLNAEKAFNAIYVASGRGTVKLGQADALDKNSDYRGIYFTSRG  470
             +V++AQGNNLK G+GTV+L+AEKAFN IY+A+G+GTVK+   DAL  +++   IYFT  G
Sbjct  403   DVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGN-GEIYFTRNG  461

Query  471   GTLDLNGFSQSFKKIAATDVGTIITNTSDKTATLSLQNPSRYVYHGSITGNTNIEH---T  527
             GTLDLNG+ QSF+KIAATD GT +TN++ K +TLSL N   Y+YHG+++GN +I+H   T
Sbjct  462   GTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHIINT  521

Query  528   GTQKSADSSLIIDGNINTRNDITVRNSQLRLQGHATSHAIFREGPRHCYVPGVLCDKDYV  587
               Q + +++LI+DG+++ +NDI+VRN+QL LQGHAT HAIF+EG  +C +P  LC+KDY 
Sbjct  522   TQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP-FLCQKDYS  580

Query  588   TDFARLESEANKKNNSAYKTNNQVASFDQPDWETRHFRFKTLNLENSEFTTARNSVVEGD  647
             + +   ES  NK+ N+ YK+NNQ+ASF QPDWE+R F F+ LNLEN+ ++ +R++ V G+
Sbjct  581   AAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVKGH  640

Query  648   IVASNSTLKLGGDVPVFIDMYDGINITGNGFGFRQDVREGRSADDGSSSYTGKITLQKGS  707
             I A NS + LG   + +IDM+ G NITG+GFGFRQ++R G SA+++S             
Sbjct  641   IEAKNSQIVLGNKTA-YIDMFSGRNITGEGFGFRQQLRSGDSAGESS-------------  686

Query  708   TLDINNRFIGGIEAHDSKVNVTSPDALLQNSGV-FVNSTLSVRDGGHLTAQKGLYSDGRV  766
                    F G++ A++SK+ V    ++   +++ ++N+ L +  G+ +TAQ  +Y D  +
Sbjct  687   -------FNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAI  739

Query  767   QIGKNGTLSLSGTPENGADNTWMPVLTYMTEGYDLTGDNATLNISQQAHVSGDVHATSSS  826
             +++   T     T     +N   P + YM++GY++T D ATL+  + A V+G++ +   +
Sbjct  740   ELAGTLT----LTGTPTENNKYSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKA  794

Query  827   SIRIGSE--NpgsvsssvspvlaaglFSGYNAAYYGAITGGKGNVSMNNGLWQLTGDSDI  884
             SI +G +  + +++  +    LA+GL++G++++Y G+I +  ++ SM N LW++ G+S +
Sbjct  795   SILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSAL  854

Query  885   NSLTTRNSRV--QSEENGAFRTLTVKTLDATGSDFVLRTDL----KDADKISITEKASGS  938
             +SL TR+S +   + EN++F+T+TV+TLDAT +  ++R+DL    +++DK+ + ++ +GS
Sbjct  855   QSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS  914

Query  939   DNTLNVSFMKNPSPGQSLNIPLVSAPAGTSGDIFKAGTRVTGFSRVTPTLRVDTTGGSTK  998
             +N+L+V + K  +   +LN+ L++AP G++ +IFKA+T+  GFS ++P +        T 
Sbjct  915   NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEHTT  974

Query  999   WILDGFRTEadkaaaakaNSFMNAGYKSFMTEVNNLNKRMGELRDTNGDAGAWARIMNGA  1058
             W L G++   + A+++ A+S+M++ YK+F+TEVNNLNKRMG+LRDTNG+AGAWARIM+GA
Sbjct  975   WTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMSGA  1034

Query  1059  GSADGGYSDNYTHVQVGFDKKHALDGVDLFTGVTMTYTDSSADSDAFSGKTKSVGGGLYA  1118
             GSA GGYSDNYTHVQ+G DKKH LDG+DLFTG+TMTYTDS A S+AFSGKTKSVG+GLYA
Sbjct  1035  GSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGLYA  1094

Query  1119  SALFNSGAYIDLIGKYIHHDNDYTGNFAGLGTKHYGTHSWYAGAETGYRYHLTEDTFIEP  1178
             SA+F+SGAYIDLI+KY+HHDN+Y++ FAGLGTK+Y++HS Y GAE+GYRYH+TED+ IEP
Sbjct  1095  SAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEP  1154

Query  1179  QAELVYGAVSGKTFRWKDGEMDLSMKNKDFSPLIGRTGIELGKTFRGKDWSVTARAGTSW  1238
             QAELVYGAVSGK F W+D  M ++MK+KDF+PLIGRTG+++GK+F GKDW VTARAG + 
Sbjct  1155  QAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGY  1214

Query  1239  QFDLLNNGETVLRDASGEKRIKGEKDSRMLFNVGMNAQIKDNMRFGLEFEKSAFGKYNVD  1298
             QFDL+ NGETVLRDASGEKRIKGEKD+R+L NVG+NA+I+DN+RFGLEFEKSAFGKYNVD
Sbjct  1215  QFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVD  1274

Query  1299  NAINANFRYMF  1309
             NAINANFRY F
Sbjct  1275  NAINANFRYSF  1285

27) ROD_p1251 in NC_013717


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1112 bits (4216),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 687/1334 (52%), Positives = 976/1334 (74%), Gaps = 75/1334 (5%)

Query  1     MNKIYSLKYCPVTQGLIAVSELASRVSAKTGRK--LLATIVGTSFLGIIGYTD---AAQM  55
             MNKIYSLKY  +T GL+AVSEL+ +VS  T+RK  +L+ I+++ +    +Y +   AA +
Sbjct  1     MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSIY---GSYGETAFAAML  57

Query  56    DTRNFWIRDYLDLAQNKGAFQAGAFGVKTPLKNGGEFSFPEVTIPDFSPVSAKGATTAIG  115
             D  N+W RDYLDLAQN+G F++GA  V+  +K+G  F FPE+ +PDFS+VS KGATT+IG
Sbjct  58    DINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSIG  117

Query  116   NAYSVTASHNGTIHHAIHTQTWGQSDYHYVDRVTKGDFAVQRLDKFVVETAGATEHVDFG  175
              AYSVTA+HNGT HHAI TQ+W+Q+ Y   +RV+ GDF+V+RL+KFVVET+G TE  DF+
Sbjct  118   GAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADFS  177

Query  176   LSATEALERYGVEFNGKKQIIGFRVGSGATGVT----SYRVGQAYNPLLRSASMFQLDWK  231
             LS+ +A+ RYGV++NGK QIIGFR G+G+T+       Y  GQ YNP L SAS+F+LDWK
Sbjct  178   LSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDWK  237

Query  232   SMH-ANNNTGGFHNETTGGDSGSGFYLYDNKNKKWVILGTLTGIVYSNN----WQRSIFA  286
             +      N   F N    GDSGSG YLYD+ ++KWV+ G  + + + ++    W  + ++
Sbjct  238   NKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAW--TNYS  295

Query  287   RYDQSTVDNLKSIFTQDISLnnqnmtinnknMAVNGKTTAIELTRSNKNKDLSFHGGGTI  346
              +++  V+NLK  FT+               M ++GK    EL+   K+KDLS  GGG +
Sbjct  296   LFNNILVNNLKKNFTN--------------TMQLDGKKQ--ELSSIIKDKDLSVSGGGVL  339

Query  347   ELTDNLNSGTGGMIFDGGQHYSVTGKDKTYKGAGVEIGKGTVVDWSVKGVANDNLHKTGA  406
              L ++ + G GG+IFD  Q Y V GKDK+YKGAG++I++ T V+W+VKGVA DNLHK G+
Sbjct  340   TLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGS  399

Query  407   GTLNVNVAQGNNLKTGDGTVFLNAEKAFNAIYVASGRGTVKLGQVDALDKNSDYRGIYFT  466
             GTL+V++AQGNNLK G+GTV+L+AEKAFN IY+A+G+GTVK+   DAL  +++   IYFT
Sbjct  400   GTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGN-GEIYFT  458

Query  467   SRGGTLDLNGFSQSFKKIAATDVGTIITNTSDKKATLSLQNASRYIYHGNITGNTDIEH-  525
               GGTLDLNG+ QSF+KIAATD GT +TN++ K++TLSL N+  Y+YHGN++GN  I+H 
Sbjct  459   RNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHI  518

Query  526   --AGTQKNADSSLIIDGNIDTHNDITVRNSQLRLQGHATTHAIFREGPRFCYVPGVLCDK  583
               +  Q N +++LI+DG++D  NDI+VRN+QL LQGHAT HAIF+EG   C +P  LC+K
Sbjct  519   INTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP-FLCQK  577

Query  584   DYVADFARLESEANKKNNSAYKTNNQVASFDQPDWENRHFRFKTLNLENAEFTTARNSIV  643
             DY A +   ES  NK+ N+ YK+NNQ+ASF QPDWE+R F F+ LNLENA ++ +R++ V
Sbjct  578   DYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANV  637

Query  644   EGDIVASDSSLKLGGDVPVFIDKYDGINITGNGFGFRQDVREGRSADDGSSSYTGnitln  703
              G+I A +S + LG   + +ID + G NITG+GFGFRQ++R G SA+++S          
Sbjct  638   KGHIEAKNSQIVLGNKTA-YIDMFSGRNITGEGFGFRQQLRSGDSAGESS----------  686

Query  704   nnstlninnRFTGGIEAHDSQVNVTSPDALLQNSGV-FVNSSLSVHDGGHLTAQKGLYSD  762
                       F G++ A++S++ V    ++   +++ ++N+ L ++ G+ +TAQ  +Y D
Sbjct  687   ----------FNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVD  736

Query  763   GRVQIGKNGTLSLSGTPEAGADNTWMPVLTYMTEGYDLTGDNATLDISQQAHVSGDIHAT  822
               ++++       + T  +  +N   P + YM++GY++T D ATL   + A V+G+I + 
Sbjct  737   KAIELAGTL----TLTGTPTENNKYSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSD  791

Query  823   SPSTIRIGSE--NPGSVASSVTPVLAAGLYSGYNAAYYGAITGGKGNVSMNSGLWQLTGD  880
               ++I +G +  + +++  +    LA+GL +G++++Y G+I +  ++ SM + LW++ G+
Sbjct  792   KKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQ  851

Query  881   STVNNLTARNSRV--QSEEKGAFRTLTVNSLDATGSDFVLRTDL----KNADKISVTGKA  934
             S++++L +R+S +   + E+++F+T+TVN+LDAT +  ++R+DL    +++DK+ V  + 
Sbjct  852   SALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQL  911

Query  935   SGSDNTLNVSFMKNPAPGQSLNIPLVSAPAGTAENVFKAGTRVTGFSRVTPTLHVDTTGG  994
             +GS+N+L+V + K      +LN+ L++AP G+  ++FKA+T+  GFS ++P +       
Sbjct  912   TGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQE  971

Query  995   STKWILDGFRTEadkaaaanadSFMNAGYKNFMTEVNNLNKRMGELRDTNGDAGAWARIM  1054
              T W L G++   + A+++ A S+M++ YK F+TEVNNLNKRMG+LRDTNG+AGAWARIM
Sbjct  972   HTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIM  1031

Query  1055  NGADSAEGGYSDNYTHVQVGFDKKHALDGVDLFTGVTMTYTDSSADSDAFSGKTKSVGGG  1114
             +GA+SA GGYSDNYTHVQ+G DKKH LDG+DLFTG+TMTYTDS A S+AFSGKTKSVG+G
Sbjct  1032  SGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAG  1091

Query  1115  LYASALFNSGAYIDLIGKYIHHDNDYTGNFAGLGTKHYGTHSWYAGAETGYRYHLTEDTF  1174
             LYASA+F+SGAYIDLI+KY+HHDN+Y++ FAGLGTK+Y++HS Y GAE+GYRYH+TED+ 
Sbjct  1092  LYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSW  1151

Query  1175  IEPQAELVYGAVSGKTFRWKDGDMDLSMKNKDFSPLIGRTGIELGKTFSGKDWRVTARAG  1234
             IEPQAELVYGAVSGK F W+D +M ++MK+KDF+PLIGRTG+++GK+FSGKDW+VTARAG
Sbjct  1152  IEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAG  1211

Query  1235  TSWQFDLLNNGETVLRDASGEKRIKGEKDGRMLMNVGLNAEIHNNVRFGLEFEKSAFGKY  1294
              + QFDL+ NGETVLRDASGEKRIKGEKDGR+LMNVGLNAEI++N+RFGLEFEKSAFGKY
Sbjct  1212  LGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKY  1271

Query  1295  NVDNAINANFRYMF  1308
             NVDNAINANFRY F
Sbjct  1272  NVDNAINANFRYSF  1285

28) espC in NC_017644


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1078 bits (4088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 661/1273 (52%), Positives = 943/1273 (75%), Gaps = 63/1273 (4%)

Query  1     MDTRNFWIRDYLDLAQNKGAFQPGAYGVKTPLKNGGEFSFPEVTIPDFSPVSAKGATTAI  60
             +D  N+W RDYLDLAQN+G F+PGA  V+  +K+G  F FPE+ +PDFS+VS KGATT+I
Sbjct  57    LDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVPDFSAVSNKGATTSI  116

Query  61    GNAYSVTASHNGTIHHAIKTQTWGQSDYHYVDRVTKGDFAVQRLDKFVVETAGATEHADF  120
             G AYSVTA+HNGT HHAI TQ+W+Q+ Y   +RV+ GDF+V+RL+KFVVET+G TE ADF
Sbjct  117   GGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRLNKFVVETTGVTESADF  176

Query  121   NLSAAEALERYGIEFNGKKQIIGFRVGAGATGVT----SYGVGQTYNPLLRSASMFQLNW  176
             +LS+ +A+ RYG+++NGK QIIGFR GAG+T+       Y  GQ YNP L SAS+F+L+W
Sbjct  177   SLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLFGQNYNPDLLSASLFNLDW  236

Query  177   NNM-YASNNTGGFYNEVTGGDSGSGFYLYDNQKKKWVILGTLTGKVF--SSKDTWAFFAR  233
             +N  Y   N   F N    GDSGSG YLYD++++KWV+ G  +   F  S++ +W+ ++ 
Sbjct  237   KNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHGVTSTVGFISSTNIAWTNYSL  296

Query  234   YDQNTVDILKNTFTQEVNLNGQKMTVNNKNIAINDKITAIELTKSNKNKDLKFHGGGSIE  293
             +++  V+ LK+ FT+ ++L+G+K                 EL+   K+KDL   GGG + 
Sbjct  297   FNNILVNNLKKNFTNTMQLDGKKQ----------------ELSSIIKDKDLSVSGGGVLT  340

Query  294   LTDNLNSGTGGLIFDEGQHYSVIGKDKAYKGAGVEIGKDTVVDWSVKGEANDNLHKTGAG  353
             L ++ + G GGLIFD  Q Y V GKDK+YKGAG++I+++T V+W+VKG A DNLHK G+G
Sbjct  341   LKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGDNLHKIGSG  400

Query  354   TLNVNVAQGNNLKTGDGTVFLNAEKAFNAIYVASGRGTVKLGQADALDKNSDYRGIYFTS  413
             TL+V++AQGNNLK G+GTV+L+AEKAFN IY+A+G+GTVK+   DAL  +++   IYFT 
Sbjct  401   TLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSESGN-GEIYFTR  459

Query  414   RGGTLDLNGFSQSFKKIAATDVGTIITNTSDKTATLSLQNPSRYVYHGSITGNTNIEH--  471
              GGTLDLNG+ QSF+KIAATD GT +TN++ K +TLSL N   Y+YHG+++GN +I+H  
Sbjct  460   NGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGNVSGNISINHII  519

Query  472   -TGTQKSADSSLIIDGNINTRNDITVRNSQLRLQGHATSHAIFREGPRHCYVPGVLCDKD  530
              T  Q + +++LI+DG+++ +NDI+VRN+QL LQGHAT HAIF+EG  +C +P  LC+KD
Sbjct  520   NTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGNNNCPIP-FLCQKD  578

Query  531   YVTDFARLESEANKKNNSAYKTNNQVASFDQPDWETRHFRFKTLNLENSEFTTARNSVVE  590
             Y + +   ES  NK+ N+ YK+NNQ+ASF QPDWE+R F F+ LNLEN+ ++ +R++ V 
Sbjct  579   YSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNLENATLSIGRDANVK  638

Query  591   GDIVASNSTLKLGGDVPVFIDMYDGINITGNGFGFRQDVREGRSADDGSSSYTGKITLQK  650
             G+I A NS + LG   + +IDM+ G NITG+GFGFRQ++R G SA+++S           
Sbjct  639   GHIEAKNSQIVLGNKTA-YIDMFSGRNITGEGFGFRQQLRSGDSAGESS-----------  686

Query  651   GSTLDINNRFIGGIEAHDSKVNVTSPDALLQNSGV-FVNSTLSVRDGGHLTAQKGLYSNG  709
                      F G++ A++SK+ V    ++   +++ ++N+ L +  G+ +TAQ  +Y + 
Sbjct  687   ---------FNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDK  737

Query  710   RVQIGKKGTLSLSGTPENGADNTWMPVLTYMTEGYDLTGDNATLNISQQAHVSGDVHATS  769
              ++++       + T     +N   P + YM++GY++T D ATL+  + A V+G++ +  
Sbjct  738   AIELAGTL----TLTGTPTENNKYSPAI-YMSDGYNMTEDGATLKAQNYAWVNGNIKSDK  792

Query  770   SSSIRIGSE--NpgsvsssvspvlaaglFSGYNAAYYGAITGGKGNVSMNNGLWQLTGDS  827
              +SI +G +  + +++  +    LA+GL++G++++Y G+I +  ++ SM N LW++ G+S
Sbjct  793   KASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQS  852

Query  828   DINSLTTRNSRV--QSEENGAFRTLTVKTLDATGSDFVLRTDL----KDADKISITEKAS  881
              ++SL TR+S +   + EN++F+T+TV+TLDAT +  ++R+DL    +++DK+ + ++ +
Sbjct  853   ALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLT  912

Query  882   GSDNTLNVSFMKNPSPGQSLNIPLVSAPAGTSGDIFKAGTRVTGFSRVTPTLRVDTTGGS  941
             GS+N+L+V + K  +   +LN+ L++AP G++ +IFKA+T+  GFS ++P +        
Sbjct  913   GSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH  972

Query  942   TKWILDGFRTEadkaaaakaNSFMNAGYKSFMTEVNNLNKRMGELRDTNGDAGAWARIMN  1001
             T W L G++   + A+++ A+S+M++ YK+F+TEVNNLNKRMG+LRDTNG+AGAWARIM+
Sbjct  973   TTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARIMS  1032

Query  1002  GAGSADGGYSDNYTHVQVGFDKKHALDGVDLFTGVTMTYTDSSADSDAFSGKTKSVGGGL  1061
             GAGSA GGYSDNYTHVQ+G DKKH LDG+DLFTG+TMTYTDS A S+AFSGKTKSVG+GL
Sbjct  1033  GAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSVGAGL  1092

Query  1062  YASALFNSGAYIDLIGKYIHHDNDYTGNFAGLGTKHYGTHSWYAGAETGYRYHLTEDTFI  1121
             YASA+F+SGAYIDLI+KY+HHDN+Y++ FAGLGTK+Y++HS Y GAE+GYRYH+TED+ I
Sbjct  1093  YASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWI  1152

Query  1122  EPQAELVYGAVSGKTFRWKDGEMDLSMKNKDFSPLIGRTGIELGKTFRGKDWSVTARAGT  1181
             EPQAELVYGAVSGK F W+D  M ++MK+KDF+PLIGRTG+++GK+F GKDW VTARAG 
Sbjct  1153  EPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGL  1212

Query  1182  SWQFDLLNNGETVLRDASGEKRIKGEKDSRMLFNVGMNAQIKDNMRFGLEFEKSAFGKYN  1241
             + QFDL+ NGETVLRDASGEKRIKGEKD+R+L NVG+NA+I+DN+RFGLEFEKSAFGKYN
Sbjct  1213  GYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYN  1272

Query  1242  VDNAINANFRYMF  1254
             VDNAINANFRY F
Sbjct  1273  VDNAINANFRYSF  1285

29) ECO111_p3-23 in NC_013366


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score = 1028 bits (3897),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 682/1292 (53%), Positives = 975/1292 (76%), Gaps = 64/1292 (4%)

Query  9     ILSPTY------TFASRMDASNFYIRDYLDFAQNKGIFQAGATNIEIIKKDGSTLKLPEV  62
             ILS+ Y      +FA+ +D +N+  RDYLD+AQN+G F++GATN++++ KDG  + +PE+
Sbjct  40    ILSSIYGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPEL  99

Query  63    PFPDFSPVANKGSTTSIGGAYSITATHNTKTHHSVAAQNWGNSTYKQVDWYTSQPDFAVS  122
             P PDFS+V+NKG+TTSIGGAYS+TATHN   HH++++Q+W++++YK  ++  S  DF+V 
Sbjct  100   PVPDFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNR-VSSGDFSVH  158

Query  123   RLDKYVVETRGATEGADTSLSTQQALERYGVNYKGEKKLIAFRAGSGKIGIRKDGNLTPL  182
             RL+K+VVET G TE+AD SLS ++A+ RYGVNY+G  ++I+FRAG+G  +   +G+   +
Sbjct  159   RLNKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF  218

Query  183   DDISYKPEMLNGSFVHIDNWSGWLVLTNNQFDEFNNLATQGDSGSALFVYDNQKKKWVVV  242
             ++ +Y+P++L++S+ ++D W     +  N+   F+N +  GDSGS+ ++YD++++KWV  
Sbjct  219   GQ-NYNPDLLSASLFNLD-WKNKSYIYTNR-TPFKNSPIFGDSGSGSYLYDKEQQKWVFH  275

Query  243   GTAWGVYNYSNGKNH--TAYSRWDQKAIDNLKKNFSYNVDMSGVQQVTIENGKLTGTGSD  300
             G +  V  + ++ N   T YS  ++  ++NLKKNF+  +++ G +Q       L++    
Sbjct  276   GVTSTV-GFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQ------ELSSI---  325

Query  301   TTDIKNKDLIFTGGGNILLKSSFDNGAGGLVFNDKKTYQVNGEDFTFKGAGVDTRNGSTV  360
                IK+KDL  +GGG + LK   D G GGL+F+ ++TY+V G D ++KGAG+D  N +TV
Sbjct  326   ---IKDKDLSVSGGGVLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTV  382

Query  361   EWNIRYDNKDNLHKIGNGTLDVRKSQNTNLKIGEGLVILGAEKTFNNIYMASGDGTVKLN  420
             EWN++    DNLHKIG+GTLDV+ +Q  NLKIG+G VIL+AEK+FN+IYMA+G GTVK+N
Sbjct  383   EWNVKGVAGDNLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKIN  442

Query  421   ANNALNGDDYAGVFFTENGGTLDLNGYDQVFKYIAATDSGTTITNTNKDKPATLSINNTD  480
             A++AL+  + + ++FT NGGTLDLNGYDQ F+ IAATD+GTT+TN+N  K +TLS+ NTD
Sbjct  443   AKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSN-VKQSTLSLTNTD  501

Query  481   SYIYHGNITGNTKITHSFDQKQQNDR---LILDGNINTTNDISIKNAHLVMQGHATNHAV  537
             +Y+YHGN++GN  I H ++  QQ++    LI+DG+++  NDIS++NA+L +QGHAT+HA+
Sbjct  502   AYMYHGNVSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAI  561

Query  538   FRDGGFSCSFPAQLKWLCGTDYVAVIQNQEKSVNQKQNTDYKTNNLVSDLSQPDWERRTF  597
             F++G  +C++P     LC  DY A I++QE +VN++ NT+YK+NN ++ +SQPDWE R F
Sbjct  562   FKEGNNNCPIP----FLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKF  617

Query  598   NFGTLHLENADFAVARNADVKGNIYAKNSSVMLGSDIAYIDLHSGKNIINDGFSFRKDIR  657
             NF  L+LENA ++++R+A+VKG+I AKNS ++LG+  AYID+ SG+NI  +GF+FR+++R
Sbjct  618   NFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLR  677

Query  658   SGISESTAGDLSSFTGRVVADNSTLAINNKFLGEFTAENkskvsvksrdvvLNTGATISN  717
             SG    +AG+ SSF G + A+NS +++ +K     T+     +S+ + D+++N GAT++ 
Sbjct  678   SG---DSAGE-SSFNGSLSAQNSKITVGDKSTVTMTGA----LSLINTDLIINKGATVTA  729

Query  718   DSTLTLEKDSRLTANMWLMNSGTINVGENAELNIQGYPIADKFIPSIHDLGNVKMTASNA  777
             ++ + ++K   L++      + T    EN           +K+ P+I   +  +MT   A
Sbjct  730   QGKMYVDKAIELAGT----LTLTGTPTEN-----------NKYSPAIYMSDGYNMTEDGA  774

Query  778   TLTAGNYAMFSGELTADNATAVRVNLGS-ETSTLSEFNPNPELTDLMFDKYNTSWTGKIS  836
             TL A NYA  +G++ +D+ +++   ++      L      P L+  +++ ++TS TG I 
Sbjct  775   TLKAQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTP-LATGLLGGFDTSYTGGID  833

Query  837   ALKGDASMVNTVWRMTGDSGLNTLKTSKSLTVFSS--DNKFSTLTVNDLTTSDSTFVLRS  894
             A  + ASM NT+WR+ G+S+L++LKT  SL +FS+  ++ F T+TVN L +++++ ++R+
Sbjct  834   APAASASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRA  893

Query  895   D----STGSDkvvvknklegknnnllvDYVANDGKHNSLNFELVSAPKGTAADVFNSQTQ  950
             D       SDK++VKN+L G NN+L VD    + ++++LN +L++APKG+  ++F++ TQ
Sbjct  894   DLSQSVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQ  953

Query  951   NVGFSDVTPVIEQKDSGEKTTWTLKGFNAVANQQSAEKAENFMSAGYKNFLAEVNNLNKR  1010
              +GFS+++PVI  K+  E TTWTL G++   N  S+  A ++MS+ YK FL+EVNNLNKR
Sbjct  954   AIGFSNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKR  1013

Query  1011  MGDLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVDKKHELDGLDLFTGFTVTHTD  1070
             MGDLRD NGEAGAWARIMSG+GSASGG+SDNYTHVQ+GVDKKHELDGLDLFTG+T+T TD
Sbjct  1014  MGDLRDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTD  1073

Query  1071  SSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHS  1130
             S AS++ FSGKTKSVGAGLYASA+FDSGAYIDLI+KYVHHDNEY+ATFAGLGT+DYS+HS
Sbjct  1074  SHASSNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHS  1133

Query  1131  WYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIGRTGV  1190
              Y GAEAGYRYHVTED+WIEPQAELVYG+VSGK+F W+D+GM ++MKDKD+NPLIGRTGV
Sbjct  1134  LYVGAEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGV  1193

Query  1191  DVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAEI  1250
             DVGKSFSGKDWKVTARAGLGYQFDL+ANGETVLRDASGEKRIKGEKD+R+LM+VGLNAEI
Sbjct  1194  DVGKSFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEI  1253

Query  1251  RDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF  1282
             RDN+RFGLEFEKSAFGKYNVDNA+NANFRYSF
Sbjct  1254  RDNLRFGLEFEKSAFGKYNVDNAINANFRYSF  1285

30) pic in NC_004741


> NC_004337_P1|7|G5|24114232|NP_708742.1|Shigella_flexneri_2a_str._301|+|7975..11832|sigA|SF2968|serine 
protease
Length=1285

 Score =  593 bits (2241),  Expect = 2e-170, Method: Compositional matrix adjust.
 Identities = 443/1048 (43%), Positives = 685/1048 (66%), Gaps = 94/1048 (8%)

Query  40    MHGQKDN--DLNAGKNLVFSGQNGAIILKDSVTQGAGYLEF--KDSYTVSAESGKTWTGA  95
             ++G+K++   +  +K+L  SG  G + LK+    G G L F  +++Y V +  +K+  GA
Sbjct  315   LDGKKQELSSIIKDKDLSVSG-GGVLTLKQDTDLGIGGLIFDKNQTYKVYG-KDKSYKGA  372

Query  96    GIITDKGTNVTWKVNGVAGDNLHKLGEGTLTINGTGVNPGGLKTGDGIVVLNQQADTAGN  155
             GI  D+ T V W+V+GVAGDNLHK+G GTL ++ +  +   LK G+G V+L+ +      
Sbjct  373   GIDIDNNTTVEWNVKGVAGDNLHKIGSGTLDVKIA--QGNNLKIGNGTVILSAE------  424

Query  156   IQAFSSVNLASGRPTVVLGDA---RQVNPDNISWGYRGGKLDLNGNAVTFTRLQAADYGA  212
              +AF+ + +A+G+ TV +       +   ++I     GG LDLNG   +F ++ A+D G+
Sbjct  425   -KAFNKIYMAGGKGTVKINAKDALSESGNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGT  483

Query  213   VITNNAQQKSQLLLDLKAQDTNVSEPTI-GNISPFGGTGTPGNLYSMILNSQTRFYILKS  271
              +TN+  ++S   L L   D+ + +  + GNIS          +  +I  +Q +      
Sbjct  484   TVTNSNVKQST--LSLTNTDAYMYHGNVSGNIS----------INHIINTTQQH------  525

Query  272   ASYGNTLWGNSLNDPAQWEFVGMNKNKAVQTVKDR--ILAGRAKQPVIFHGQLTGNMDVA  329
                         N+ A+  F G    K   +V++    L G+A +  IF     GN + +
Sbjct  526   ------------NNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKE---GNNNCP  570

Query  330   IPQVPGGRKVIFDGSVNLPEGTLSQDSGTLIFQGHPVIHASISGSAPVSLNQKDWENRQF  389
             IP +    +  + ++++  E+T+++   T  ++++  I          S++Q DWE+R+F
Sbjct  571   IPFLC---QKDYSAAIKDQESTVNKRYNT-EYKSNNQI---------ASFSQPDWESRKF  617

Query  390   TMKTLSLKDADFHLSRNASLNSDIKSDNSHITLGSDRAFVDKNDGTGNYVIPEEGTSVPD  449
               + L+L +A + ++R+A+++++I + NS+I LG+  A++D   G     I  EG +  +
Sbjct  618   NFRKLNLENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRN---ITGEGFGFRQ  674

Query  450   TVNDRSQYEGNITLNHNSALDIGSRFTGGIDAYDSAVSI-TSPDVLLTAPGAFAGSSLTV  508
              +             +++     S F G++ A +S +++   + V +T++ ++  + L +
Sbjct  675   QL-------------RSGDSAGESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLII  721

Query  509   HDGGHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYLTDGYDLTGDNAALE  568
             + G+ +TA   ++ D  I+ +       + T      N+Y+PA+Y++DGY++T D A+L 
Sbjct  722   NKGATVTAQGKMYVDKAIELAGTL----TLTGTPTENNKYSPAIYMSDGYNMTEDGATLK  777

Query  569   ITRGAHASGDIHASAASTVTIGSDTPaelasaetaasafaGSLLEGYNAAFNGAITGGRA  628
                 A  +G+I +   +++ +G D   E     T+ +++A +LL G+++++ G+I +  A
Sbjct  778   AQNYAWVNGNIKSDKKASILFGVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAA  837

Query  629   DVSMHNALWTLGGDSAIHSLTVRNSRI--SSEGDRTFRTLTVNKLDATGSDFVLRTDL--  684
               SM N+LW + G+SA++SL  R+S +  S+  +  F+T+TVN LDAT +  ++R+DL  
Sbjct  838   SASMYNTLWRVNGQSALQSLKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQ  897

Query  685   --KNADKINVTEKATGSDNSLNVSFMNNPAQGQALNIPLVTAPAGTSAEMFKAGTRVTGF  742
               +++DK+ V ++ TGS+NSL+V + +   +  +LN+ L+TAP G++ E+FKA+T+  GF
Sbjct  898   SVNQSDKLIVKNQLTGSNNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGF  957

Query  743   SRVTPTLHVDTSGGNTKWILDGFkaeadkaaaakadSFMNAGYKNFMTEVNNLNKRMGDL  802
             S ++P +       +T W L G+K   + A+++ A S+M++ YK F+TEVNNLNKRMGDL
Sbjct  958   SNISPVISTKEDQEHTTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDL  1017

Query  803   RDTNGDAGAWARIMsgagsadggysdNYTHVQVGFDKKHELDGVDLFTGVTMTYTDSSAD  862
             RDTNG+AGAWARIMSGAGSA GGYSDNYTHVQ+G DKKHELDG+DLFTG+TMTYTDS A 
Sbjct  1018  RDTNGEAGAWARIMSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHAS  1077

Query  863   SHAFSGKTKSVGGGLYASALFESGAYIDLIGKYIHHDNDYTGNFASLGTKHYNTHSWYAG  922
             S+AFSGKTKSVG+GLYASA+F+SGAYIDLI+KY+HHDN+Y++ FA+LGTK+Y++HS Y G
Sbjct  1078  SNAFSGKTKSVGAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVG  1137

Query  923   AETGYRYHLTEDTFIEPQAELVYGAVSGKTFRWKDGDMDLSMKNRDFSPLVGRTGVELGK  982
             AE+GYRYH+TED+ IEPQAELVYGAVSGK F W+D +M ++MK++DF+PL+GRTGV++GK
Sbjct  1138  AEAGYRYHVTEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGK  1197

Query  983   TFSGKDWSVTARAGTSWQFDLLNNGETVLRDASGEKRIKGEKDSRMLFNVGMNAQIKDNM  1042
             +FSGKDW VTARAG + QFDL+ NGETVLRDASGEKRIKGEKD+R+L NVG+NA+I+DN+
Sbjct  1198  SFSGKDWKVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNL  1257

Query  1043  RFGLEFEKSAFGKYNVDNAVNANFRYMF  1070
             RFGLEFEKSAFGKYNVDNA+NANFRY F
Sbjct  1258  RFGLEFEKSAFGKYNVDNAINANFRYSF  1285