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PAthogenisity Island DataBase (PAI DB)

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Homologs of HP0527 gene of AB120424

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HPKB_0815
( YP_005762323.1 )

conjugation TrbI family protein

NC_017354
(Helicobacter pylori 52)

0.0

2) HPIN_04260
( YP_005782161.1 )

cag pathogenicity island protein (cag7)

NC_017372
(Helicobacter pylori India7)

0.0

3) HPSNT_02715
( YP_005786683.1 )

cag pathogenicity island protein (cag7)

NC_017376
(Helicobacter pylori Santal49)

0.0

4) K750_04135
( YP_007982183.1 )

hypothetical protein

NC_021217
(Helicobacter pylori UM037)

0.0

5) HPPN135_02585
( YP_005789734.1 )

cag pathogenicity island protein

NC_017379
(Helicobacter pylori Puno135)

0.0

6) K748_07945
( YP_008337443.1 )

hypothetical protein

NC_021882
(Helicobacter pylori UM298)

0.0

7) K749_01335
( YP_007980064.1 )

hypothetical protein

NC_021216
(Helicobacter pylori UM299)

0.0

8) HPSH112_04410
( YP_006227576.1 )

cag pathogenicity island protein (cag7)

NC_017741
(Helicobacter pylori Shi112)

0.0

9) HPPN120_02565
( YP_005788189.1 )

cag pathogenicity island protein (cag7)

NC_017378
(Helicobacter pylori Puno120)

0.0

10) HPPC18_02525
( YP_006228771.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017742
(Helicobacter pylori PeCan18)

0.0

11) cag7
( YP_007538436.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

12) HPV225_0522
( YP_005763455.1 )

cag pathogenicity island protein

NC_017355
(Helicobacter pylori v225d)

0.0

13) cagY
( YP_005777271.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017367
(Helicobacter pylori F57)

0.0

14) HPSH169_02700
( YP_006225732.1 )

cag pathogenicity island protein (cag7)

NC_017740
(Helicobacter pylori Shi169)

0.0

15) HPSAT_04140
( YP_005768472.1 )

cag pathogenicity island protein (cagY, cag7)

NC_017359
(Helicobacter pylori Sat464)

0.0

16) HPSH_04285
( YP_001910322.1 )

cag pathogenicity island protein CagY

NC_010698
(Helicobacter pylori Shi470)

0.0

17) HPLT_02610
( YP_005772666.1 )

cag pathogenicity island protein (cag7, cagY)

NC_017362
(Helicobacter pylori Lithuania75)

0.0

18) cagY
( YP_005779063.1 )

cag island protein

NC_017368
(Helicobacter pylori F16)

0.0

19) K751_03260
( YP_007983632.1 )

hypothetical protein

NC_021218
(Helicobacter pylori UM066)

0.0

20) HPELS_03975
( YP_005424915.1 )

cag pathogenicity island protein (cag7)

NC_017063
(Helicobacter pylori ELS37)

0.0

21) HPSH417_02515
( YP_006224150.1 )

cag pathogenicity island protein CagY

NC_017739
(Helicobacter pylori Shi417)

0.0

22) cagY
( YP_005774542.1 )

cag pathogenicity island protein

NC_017365
(Helicobacter pylori F30)

0.0

23) HP0527
( NP_207323.1 )

cag pathogenicity island protein (cag7)

NC_000915
(Helicobacter pylori 26695)

0.0

24) C694_02720
( YP_006934450.1 )

cag pathogenicity island protein (cag7)

NC_018939
(Helicobacter pylori 26695)

0.0

25) C695_02720
( YP_006893015.1 )

cag pathogenicity island protein (cag7)

NC_018937
(Helicobacter pylori Rif1)

0.0

26) C730_02720
( YP_006936056.1 )

cag pathogenicity island protein (cag7)

NC_018938
(Helicobacter pylori Rif2)

0.0

27) cagY
( YP_003728737.1 )

cag pathogenicity island protein Y

NC_014256
(Helicobacter pylori B8)

0.0

28) HMPREF4655_21077
( YP_005770164.1 )

cag pathogenicity island protein

NC_017360
(Helicobacter pylori 35A)

0.0

29) HPSJM_02650
( YP_003928443.1 )

cag island protein

NC_014560
(Helicobacter pylori SJM180)

0.0

30) K747_11675
( YP_008357563.1 )

hypothetical protein

NC_021215
(Helicobacter pylori UM032)

0.0

31) orf13/14
( NP_223194.1 )

cag island protein

NC_000921
(Helicobacter pylori J99)

0.0

32) HPAG1_0502
( YP_627243.1 )

cag pathogenicity island protein Y

NC_008086
(Helicobacter pylori HPAG1)

0.0

33) cagY
( YP_002301168.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_011498
(Helicobacter pylori P12)

0.0

• Sequence Alignments

1) HPKB_0815 in NC_017354


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 2088 bits (7933),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1719/1760 (98%), Positives = 1746/1760 (99%), Gaps = 0/1760 (0%)

Query  139   ETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDEYESEETQT  198
             ETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKES+DH LDN TETKTNFDEYE EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneeddqennGYQ  258
             QMD GGNETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEEIQEPNEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   EETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNF  318
             EETQ+DLIDDETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKES+DH LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNQLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYN+LLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQA  738
             LQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   RTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLTPEAKKLLE  798
             +TEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA+TEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQVLDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             QQ LDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  859   tpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeeakeSVKAYLDC  918
             TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  919   VSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLTPEAR  978
             VSQARTEAEKKECEKLLTPEA+KKLEEAKKSVK YLDCVSQARTEAEKKECEKLLTPEAR
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  979   KLLEQEVKKSVKAYLDCVSRARNEKERKACEKLLTPEARKKLEEAKKSVKAYLDCVSQAR  1038
             KLLEQEVKKSVKAYLDCVSRARNEKE++ CEKLLTPEARKKLEEAKKSVK YLDCVSQAR
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1039  TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKFLE  1098
             TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEAKKFLE
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLE  968

Query  1099  QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKERKACekll  1158
             QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KERKACEKLL
Sbjct  969   QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLL  1028

Query  1159  tpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDC  1218
             TPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDC
Sbjct  1029  TPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDC  1088

Query  1219  VSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAK  1278
             VSRARNEKEK+ECEKLLTPEARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQENVLAK
Sbjct  1089  VSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAK  1148

Query  1279  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQE  1338
             ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+E
Sbjct  1149  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1208

Query  1339  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1398
             CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE
Sbjct  1209  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1268

Query  1399  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1458
             KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD
Sbjct  1269  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1328

Query  1459  PTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1518
             PTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF
Sbjct  1329  PTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1388

Query  1519  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnk  1578
             KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK
Sbjct  1389  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK  1448

Query  1579  kdddkekskkstaeskvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK  1638
             KDDDKEKSKKSTAE+KVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK
Sbjct  1449  KDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK  1508

Query  1639  KAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1698
             K+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG
Sbjct  1509  KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1568

Query  1699  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1758
             TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD
Sbjct  1569  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1628

Query  1759  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1818
             GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS
Sbjct  1629  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1688

Query  1819  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1878
             MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ
Sbjct  1689  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1748

Query  1879  STKTLSREHEEITTSPKGGN  1898
             STKTLSREHEEITTSPKGGN
Sbjct  1749  STKTLSREHEEITTSPKGGN  1768


 Score =  175 bits (648),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 182/199 (92%), Positives = 190/199 (96%), Gaps = 0/199 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKES+DH LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneed  120
            YE EETQTQMD GGNETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDN  180
            DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKES+DH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETKTNFDEYESEETQTQ  199
            PTETKTNFDEY SEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

2) HPIN_04260 in NC_017372


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1984 bits (7538),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1658/1768 (94%), Positives = 1707/1768 (97%), Gaps = 9/1768 (0%)

Query  1     MNEENDKLETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDE  60
             MNEENDKLETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKT+FDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YELEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120
             YELEETQTQ+DSGGNETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   DQGNNGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
             DQ NNGYQEETQIDLIDDETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   YTETEINFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPL  240
              TET  NFD  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480
             LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCISKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDC+S+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKESLKAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakneaekkeceklltpeakkkleeakksvkaYLDCASQARTEAEKKECEKLLT  660
             YLDCVSQAK EAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC SQA+TEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteae  720
             PEA+KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  721   kkeceklltPEARKLLEEAKESLKAYKDCVSRARNkkekkeceklltpeakklleeeake  780
             KKECEKLLTPEA+KLLEEAKESLKAYKDCVSRARN KEKKECEKLLTPEAKKLLEEEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  781   SVKAYLDCVSQakneaekkeceklltpeakkkleeakksvkaYLDCVSKARTEAEKKECE  840
             SVK YLDCVSQA+ EAEKKECEKLLTPEA+KKLEEAKKSVK YLDCVS+ARTEAEKKECE
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  841   KLLTPEAKKLLEQQA-------LDCLKNAKTEADKKRCVKDLPKDLQKKVL-AKESLKAY  892
             KLLTPEA+KLLEQ+        LDC+  A+ E +K+ C K L  + +KK+  AK S+K Y
Sbjct  841   KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVY  900

Query  893   KDCVSRARNekekke-ceklltpeakklleeakeslkaYKDCVSQARNekekkecekLLT  951
              DCVS+AR E EKKE    L     K L +E K S+KAY DCVS+ARNEKEKKECEKLLT
Sbjct  901   LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT  960

Query  952   PEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSKARNeke  1011
             PEAKK+LEQQALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVS+ARN KE
Sbjct  961   PEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKE  1020

Query  1012  kkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1071
             +K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK
Sbjct  1021  RKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1080

Query  1072  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKD  1131
             SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKQVL+CLEKA NEEE+KACLKNLPKD
Sbjct  1081  SVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKD  1140

Query  1132  LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKA  1191
             LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A
Sbjct  1141  LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1200

Query  1192  RNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL  1251
             RNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL
Sbjct  1201  RNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL  1260

Query  1252  KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQAS  1311
             KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQAS
Sbjct  1261  KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQAS  1320

Query  1312  ECLDNLDDPTDEQAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG  1371
             ECLDNLDDPTD+QAIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG
Sbjct  1321  ECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG  1380

Query  1372  YPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleakl  1431
             YPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKL
Sbjct  1381  YPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKL  1440

Query  1432  akalggnkkdddkekskksateaktesNKIDKDVAETAKNISEIALKNKKEKNGEFVDEN  1491
             AKALGGNKKDDDKEKSKKS++EAK ESNKIDKDVAETAKNISEIALKNKKEK+GEFVDEN
Sbjct  1441  AKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDEN  1500

Query  1492  GNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA  1551
             GNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA
Sbjct  1501  GNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA  1560

Query  1552  KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG  1611
             KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG
Sbjct  1561  KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG  1620

Query  1612  MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA  1671
             MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA
Sbjct  1621  MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA  1680

Query  1672  LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS  1731
             LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS
Sbjct  1681  LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS  1740

Query  1732  VVDEIIKQSTKTLSREHEEITTSPKGGN  1759
             VVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1741  VVDEIIKQSTKTLSREHEEITTSPKGGN  1768

3) HPSNT_02715 in NC_017376


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1946 bits (7391),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1672/1807 (93%), Positives = 1723/1807 (96%), Gaps = 49/1807 (2%)

Query  1     MNEENDKLETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDE  60
             MNEENDKLETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDH LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YESEETQTQMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
             YE EETQTQMDSGGNETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDN  180
             DQENNGYQEETQIDLIDDETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   PTETKTNFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPL  240
             PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIKIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEI+IRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLKAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPL+AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480
             LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakneaekkeceklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLT  660
             YLDCVSQAK EAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA+TEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteae  720
             PEAKKLLEQQALDCLK+AKT+ ++K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  721   kkeceklltPEARKLLEEAKESVKAYKDCVSRARNekekkecekLLTPearklleeeake  780
             KKECEKLLTPEA+KLLEEAKES+KAYKDCVSRARNEKEKKECEKLLTPEA+KLLEEEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  781   SVKAYLDCVSQakteaekkeceklltpeakkkleeakksakaylDCVSQakteaekkece  840
             SVK YLD                                      CVSQA+TEAEKKECE
Sbjct  781   SVKVYLD--------------------------------------CVSQARTEAEKKECE  802

Query  841   klltPEARKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL---AKESLKA  891
             KLLTPEARK LE+        LDC+ +A+TEAEKK C K L  +  +K+L    K S+KA
Sbjct  803   KLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKA  861

Query  892   YKDCVSRARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkecekllt  951
             Y DCVSRARNEKEK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+TEAEKKECEKLLT
Sbjct  862   YLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLT  921

Query  952   PEARKLLE-EAKESLKAYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTD  1010
             PEARKLLE E K S+KAY DCVSRARNEKEKKECEKLLTPEAKK+LEQQALDCLKNAKT+
Sbjct  922   PEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTE  981

Query  1011  AEKKRCAKDLPKDLQKKVLAKESVKAYLDCVSRARNEKERKACeklltpeakklleeake  1070
             +EKKRC KDLPKDLQKKVLAKESVKAY+DCVSRARN KERKACEKLLTPEAKKLLEEAKE
Sbjct  982   TEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKE  1041

Query  1071  slkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQEC  1130
             SLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK+SVKAYLDCVSRARNEKEK+EC
Sbjct  1042  SLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKEC  1101

Query  1131  EKLLTPEARKFLAKQVLSCLEKAKNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQA  1190
             EKLLTPEARKFLAKQVLSCLEKA+NEEE+KACLKNLPKDLQENVLAKESLKAYKDCLSQA
Sbjct  1102  EKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQA  1161

Query  1191  RNEEERRACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL  1250
             RNEEERRACEKLLTPEARKLLEQEVK+SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFL
Sbjct  1162  RNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFL  1221

Query  1251  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1310
             AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD
Sbjct  1222  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1281

Query  1311  EEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG  1370
             EEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG
Sbjct  1282  EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG  1341

Query  1371  LSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1430
             LSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN
Sbjct  1342  LSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1401

Query  1431  VDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksta  1490
             VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA
Sbjct  1402  VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA  1461

Query  1491  eakaesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQ  1550
             EAK ESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKK+EKQDETSPVKQ
Sbjct  1462  EAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQ  1521

Query  1551  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1610
             AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG
Sbjct  1522  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1581

Query  1611  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1670
             NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF
Sbjct  1582  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1641

Query  1671  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAHMSNQILG  1730
             AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSA+MSNQILG
Sbjct  1642  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1701

Query  1731  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1790
             QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT
Sbjct  1702  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1761

Query  1791  TSPKGGN  1797
             TSPKGGN
Sbjct  1762  TSPKGGN  1768

4) K750_04135 in NC_021217


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1936 bits (7356),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1631/1798 (91%), Positives = 1680/1798 (94%), Gaps = 51/1798 (2%)

Query  137   ETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSD--NHLDNSTETKSNFDGDKLEETQT  194
             ETSKKTQQHSPQDLSNEEATEANHF D  KE      + LDN TETK+NFD   LEETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  195   QIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnldeetqelneeddqennGYQ  254
             Q+DSGGNETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  255   EETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEESSD--NHLDNPTETQTNF  312
             EETQ DLIDDETSKKTQQ+SPQ  SNEEATE NHFED  KE      + LDNPTET+TNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  313   DGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  372
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  373   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  432
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  433   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKCLDLIKDEN  492
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  493   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  552
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  553   KNAKTEAEKNKCLKSLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  612
             KNAKTEAEKN CLK+LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  613   SVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  672
             SVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  673   LQSDILAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSVKAYLDCVSQA  732
             LQSDILAKES+KAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAK SVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  733   KTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkeceklltPEAKKLLE  792
             KTE EKKECEKLLTPEAKKKLEE+KKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  793   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakneaekkecekLL  852
             QQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAK EAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  853   TPEARKLLEEAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSVKAYLDC  912
             TPEA+KLLEEAKES+KAYKDCVS+A+ E EKKECEKLLTPEAKKLLEEEAK SVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  913   VSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkeceklltPEAK  972
             VSQA+TE EKKECEKLLTPEA+KKLEE+KKSVK YLDCVSQA+TEAEKKECEKLLTPEA+
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  973   KLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKV-LAKESVKAYLDCVSRAR  1024
             KLLEQ+        LDC+  A+ E EK+ C K L  + +KK+  AK SVK YLDCVS+AR
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1025  NekekkecekLLTPeakk-kleeskesvkaYLDCVSRARNekekkecekLLTPeakkkle  1083
              E EKKECEKLLTPEA+K   +E K SVKAYLDCVSRARNEKEKKECEKLLTP       
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTP-------  961

Query  1084  eskksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKD  1143
                                            EAKK+LEQQALDCLKNAKTE+EKKRCVKD
Sbjct  962   -------------------------------EAKKFLEQQALDCLKNAKTETEKKRCVKD  990

Query  1144  LPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCL  1203
             LPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKDCL
Sbjct  991   LPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCL  1050

Query  1204  SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAR  1263
             SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAR
Sbjct  1051  SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAR  1110

Query  1264  KFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC  1323
             KFLAKQVL+CLEKA NEEE+KACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC
Sbjct  1111  KFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC  1170

Query  1324  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDK  1383
             EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDK
Sbjct  1171  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDK  1230

Query  1384  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1443
             AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL
Sbjct  1231  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1290

Query  1444  YSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALI  1503
             YSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSE+ALI
Sbjct  1291  YSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKALI  1350

Query  1504  LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1563
             LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD
Sbjct  1351  LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1410

Query  1564  NPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkeksekstakakaesNKI  1623
             NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKS KSTA AK ESNKI
Sbjct  1411  NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKI  1470

Query  1624  DKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDPT  1683
             DKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK+E QDETSPVKQAFIGKSDPT
Sbjct  1471  DKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPT  1530

Query  1684  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1743
             FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT
Sbjct  1531  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1590

Query  1744  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1803
             PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS
Sbjct  1591  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1650

Query  1804  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1863
             FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF
Sbjct  1651  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1710

Query  1864  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1921
             YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1711  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  163 bits (603),  Expect = 7e-41, Method: Compositional matrix adjust.
 Identities = 156/201 (78%), Positives = 166/201 (83%), Gaps = 4/201 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSD--NHLENSTETQTNFDG  58
            MNEENDKLETSKKTQQHSPQDLSNEEATEANHF D  KE      + L+N TET+TNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  59   DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEY  118
              LEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEE 
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  DQENSEYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEANHF--KDLLKEESSDNHLDN  176
            DQEN+ YQEETQ +LIDDETSKKTQQHSPQDLSNEEATEANHF        ESSD+ LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  177  STETKSNFDGDKLEETQTQID  197
            +TETK+NFD  K EE   + +
Sbjct  181  PTETKTNFDEYKSEEITNDSN  201

5) HPPN135_02585 in NC_017379


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1914 bits (7271),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1664/1745 (96%), Positives = 1707/1745 (98%), Gaps = 3/1745 (0%)

Query  126   QEETIKANHFedsskeskessdH-LDNSTETKTNFDGEKSEETQTQMDSGDNETSESSN-  183
             +EE+  ANHFEDSSKESKESSDH LDN TETKTNFD    EETQTQMDSG+NETSESSN 
Sbjct  24    NEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQTQMDSGGNETSESSNG  83

Query  184   -LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQEEIQMDLIDDETSKK  242
              LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQEE Q+DLIDDETSKK
Sbjct  84    SLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQEETQIDLIDDETSKK  143

Query  243   TQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDEYKSEEITNDSNDQ  302
             TQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDNPTETKTNFDEYKSEEITNDSNDQ
Sbjct  144   TQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNFDEYKSEEITNDSNDQ  203

Query  303   EiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQ  362
             EIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQ
Sbjct  204   EIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQ  263

Query  363   EYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEE  422
             EYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEE
Sbjct  264   EYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEE  323

Query  423   ClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVAL  482
             CLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVAL
Sbjct  324   CLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVAL  383

Query  483   DCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCIKNAKTEAEKNKCLKG  542
             DCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCIKNAKTEAEKN CLKG
Sbjct  384   DCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKG  443

Query  543   LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNe  602
             LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVS+ARNE
Sbjct  444   LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNE  503

Query  603   kekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYK  662
             KEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKES+KAYK
Sbjct  504   KEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYK  563

Query  663   DCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQakteaekkaceklltp  722
             DCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK CEKLLTP
Sbjct  564   DCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTP  623

Query  723   eakkkleeakksvkaYLDCVSQakteaekkacekLLTPEAKKLLEQQALDCLKNAKTEAE  782
             EAKKKLEEAKKSVKAYLDCVSQAKTEAEKK CEKLLTPEAKKLLEQQALDCLK+AKT+ E
Sbjct  624   EAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEE  683

Query  783   KKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkeceklltpeakklleeakesl  842
             +K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESL
Sbjct  684   RKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESL  743

Query  843   kaYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYKDCVSQakteaekkecek  902
             KAYKDCVSRARNEKEK+ECEKLLTPEA+KLLE+E K SVK Y DCVSQA+TEAEKKECEK
Sbjct  744   KAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEK  803

Query  903   lltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeeakeSVKAYL  962
             LLTPEA+K LEEAK S+K Y DCVS+AR E EKKECEKLLTPEA+KLLE+E K SVKAYL
Sbjct  804   LLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYL  863

Query  963   DCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQakteaekkeceklltPE  1022
             DCVS+AR E EK+ECEKLLTPEARKKLEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPE
Sbjct  864   DCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE  923

Query  1023  ARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTESE  1082
             ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKK+LEQQALDCLKNAKTE+E
Sbjct  924   ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETE  983

Query  1083  RKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekLLTPEARKLLEEAKESL  1142
             +KRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEA+KLLEEAKESL
Sbjct  984   KKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESL  1043

Query  1143  KAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK  1202
             KAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEK
Sbjct  1044  KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEK  1103

Query  1203  LLTPEARKFLAKQVLSCLEKARNEEERKACLKDIPKDLQKNVLAKESLKAYKDCLSQARN  1262
             LLTPEARKFLAKQVLSCLEKARNEEE+KACLK++PKDLQ NVLAKESLKAYKDCLSQARN
Sbjct  1104  LLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  1163

Query  1263  EEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAK  1322
             EEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAK
Sbjct  1164  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1223

Query  1323  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1382
             ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1224  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1283

Query  1383  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1442
             KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLS
Sbjct  1284  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1343

Query  1443  DSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1502
             DSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1344  DSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1403

Query  1503  ADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEA  1562
             ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA
Sbjct  1404  ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA  1463

Query  1563  RVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAF  1622
             +VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAF
Sbjct  1464  KVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAF  1523

Query  1623  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1682
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1524  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1583

Query  1683  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1742
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1584  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1643

Query  1743  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1802
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1644  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1703

Query  1803  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1862
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1704  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1763

Query  1863  PKGGN  1867
             PKGGN
Sbjct  1764  PKGGN  1768


 Score =  120 bits (439),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 153/204 (75%), Positives = 158/204 (78%), Gaps = 29/204 (14%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YKSEETQTQMDFGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            Y  EETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  dqennGYQEET--------------------------IKANHFedsskeskessdH-LDN  151
            DQENNGYQEET                            ANHFEDSSKESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  152  STETKTNFDGEKSEETQTQMDSGD  175
            +TETKTNFD  KSEE   + +  +
Sbjct  181  PTETKTNFDEYKSEEITNDSNDQE  204


 Score = 50.5 bits (172),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 50/61 (82%), Positives = 52/61 (86%), Gaps = 0/61 (0%)

Query  238  ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDEYKSEEITN  297
            ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFDEY  EE   
Sbjct  9    ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  298  D  298
            +
Sbjct  69   Q  69

6) K748_07945 in NC_021882


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1900 bits (7219),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1607/1761 (92%), Positives = 1660/1761 (95%), Gaps = 49/1761 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKTNFD Y  EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  258
             QMDSGGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEEDDQE+NGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  318
             EETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  378
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPKDLQKELLADM  618
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+DLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAK SLKAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECekll  858
             QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E EK+ECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  859   tpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQA-------LD  911
             TPEAKKLLEE    S+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++A       LD
Sbjct  729   TPEAKKLLEEAKE-SLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLD  787

Query  912   CLKSAKTDEERKKCLKDLPKDLQKKVL-AKESLKAYKDCVSRARNEKEKQECeklltpea  970
             C+  A+T+ E+K C K L  + +KK+  AK S+K Y DCVS+AR E EK+ECEKLLTPEA
Sbjct  788   CVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEA  847

Query  971   kklleeakkslkay-kDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRA  1029
             +KLLE+  K       DCVSRARNEKEKQECEKLLTPEA+K LEEAKKS+K Y DCVS+A
Sbjct  848   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  907

Query  1030  RNEKEKQECEKLLTPEAKNLLEQ-------------------------------------  1052
             R E EK+ECEKLLTPEA++LLEQ                                     
Sbjct  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  1053  --QALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekl  1110
               QALDCLK+AKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKL
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1111  ltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1170
             LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1171  CVSRARNEKEKQECEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLA  1230
             CVSRARNEKEK+ECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ NVLA
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1231  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1290
             KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1291  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1350
             ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1351  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLD  1410
             EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1411  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1470
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1471  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggn  1530
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1531  kkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1590
             KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1591  KKAETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1650
             KK+E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1651  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1710
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1711  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1770
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1771  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1830
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1831  QSTKTLSREHEEITTSPKGGN  1851
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768


 Score =  197 bits (731),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 182/199 (92%), Positives = 187/199 (94%), Gaps = 0/199 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
            Y  EETQTQMDSGGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETKTNFDGYKSEETQTQ  199
            PTETKTNFD YKSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

7) K749_01335 in NC_021216


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1900 bits (7219),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1607/1761 (92%), Positives = 1660/1761 (95%), Gaps = 49/1761 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKTNFD Y  EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  258
             QMDSGGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEEDDQE+NGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  318
             EETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  378
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPKDLQKELLADM  618
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+DLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAK SLKAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECekll  858
             QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E EK+ECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  859   tpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQA-------LD  911
             TPEAKKLLEE    S+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++A       LD
Sbjct  729   TPEAKKLLEEAKE-SLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLD  787

Query  912   CLKSAKTDEERKKCLKDLPKDLQKKVL-AKESLKAYKDCVSRARNEKEKQECeklltpea  970
             C+  A+T+ E+K C K L  + +KK+  AK S+K Y DCVS+AR E EK+ECEKLLTPEA
Sbjct  788   CVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEA  847

Query  971   kklleeakkslkay-kDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRA  1029
             +KLLE+  K       DCVSRARNEKEKQECEKLLTPEA+K LEEAKKS+K Y DCVS+A
Sbjct  848   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  907

Query  1030  RNEKEKQECEKLLTPEAKNLLEQ-------------------------------------  1052
             R E EK+ECEKLLTPEA++LLEQ                                     
Sbjct  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  1053  --QALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekl  1110
               QALDCLK+AKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKL
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1111  ltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1170
             LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1171  CVSRARNEKEKQECEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLA  1230
             CVSRARNEKEK+ECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ NVLA
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1231  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1290
             KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1291  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1350
             ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1351  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLD  1410
             EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1411  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1470
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1471  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggn  1530
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1531  kkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1590
             KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1591  KKAETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1650
             KK+E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1651  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1710
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1711  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1770
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1771  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1830
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1831  QSTKTLSREHEEITTSPKGGN  1851
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768


 Score =  197 bits (731),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 182/199 (92%), Positives = 187/199 (94%), Gaps = 0/199 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
            Y  EETQTQMDSGGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETKTNFDGYKSEETQTQ  199
            PTETKTNFD YKSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

8) HPSH112_04410 in NC_017741


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1896 bits (7204),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1589/1761 (91%), Positives = 1650/1761 (94%), Gaps = 51/1761 (2%)

Query  137   ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDGEKSEETQT  196
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN TETKTNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  197   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  254
             QMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  255   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  314
             EETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDH LDN+TETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  315   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  374
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  375   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  434
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  435   KAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  494
             +AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  495   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  554
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  555   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  614
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  615   SVKAYKDCVSKARNEEERKACEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  674
             SVKAYKDCVS+ARNE E+K CEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  675   LQSDILAKESLKAYKDCVSQARNEEERKSCeklltpeakklleeeakeSVKAYLDCVSQa  734
             LQSDILAKESLKAYKDCVSQA+NE E+K CEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  735   kteaekkeceklltpeakkkleeakksvkaYLDCVSRARNEKEKQECEKLLTPEAKKLLE  794
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EK+ECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  795   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLA---------------------------  827
             QQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLA                           
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  828   -----------KESLKVYLDCVSQakteaekkeceklltpeakkl-leeakeslkaYKDC  875
                        KESLK Y DCVS+A+ E EKKECEKLLTPEAKKL  EEAKES+K Y DC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  876   VSRARNEKEKQECEKLLTPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQ  929
             VS+AR E EK+ECEKLLTPEA+K LE+        LDC+ +A+TEAEKK C K L  +  
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-A  847

Query  930   KKVL---AKESLKVYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCLSQA  986
             +K+L    K S+K YLDCVS+A+ E EK+ECEKLLTPEA+K LEEAK S+K Y DC+SQA
Sbjct  848   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  907

Query  987   RNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKLL  1046
             R E E+K CEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEA+K+L
Sbjct  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  1047  EQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECekl  1106
             EQQALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE++ CEKL
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1107  ltpeakklleeakeslkaYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLD  1166
             LTPEAKKLLEEAKESLKAYKDC+SQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1167  CVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLA  1226
             CVSRARNEKEK+ECEKLLTPEARKFLAKQ LSCLEKARNEEE+KACLKN+PKDLQ NVLA
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1227  KESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1286
             KESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1287  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1346
             ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1347  EKAVLDCLKTARSDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1406
             EKAVLDCLKTAR+DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1407  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1466
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1467  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggn  1526
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1527  kkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIddk  1586
             KKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1587  kktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1646
             KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1647  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1706
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1707  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1766
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1767  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1826
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1827  QSTKTLSREHEEITTSPKGGN  1847
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768


 Score =  167 bits (617),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 172/199 (87%), Positives = 178/199 (90%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  118
               EETQTQMDSGGNETSESSN  LADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
            DQENNGYQEE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179  STETKTNFDGEKSEETQTQ  197
            +TETKTNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

9) HPPN120_02565 in NC_017378


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1894 bits (7193),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1678/1760 (96%), Positives = 1721/1760 (98%), Gaps = 4/1760 (0%)

Query  136   ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDNSTETKTNFDGEKSEETQT  194
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  195   QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  252
             QMDSG+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  253   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDNSTETKTNF  311
             EE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN+TETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  312   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  371
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  372   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  431
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  432   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  491
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  492   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  551
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  552   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  611
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  612   SVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  671
             SVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  672   LQSDILAKESVKAYRDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  731
             LQSDILAKES+KAY+DCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  732   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  791
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  792   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  851
             QQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  852   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEARKLLEQEVKKSVKAYLDC  911
             TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEA+KLLE+E K SVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  912   VSQakteaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPear  971
             VSQA+TEAEKKECEKLLTPEA+K LEEAK S+K Y DC+SQAR E E+K CEKLLTPEAR
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  972   klleeeakeSVKAYLDCVSQakteaekkeceklltPEARKKLEEAKKSVKAYLDCVSQak  1031
             KLLE+E K SVKAYLDCVS+A+ E EK+ECEKLLTPEARKKLEEAKKSVK YLDCVSQA+
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1032  teaekkeceklltPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKLLE  1091
             TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEA+K+LE
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLE  968

Query  1092  QQALDCLKSAKTEAERKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekll  1151
             QQALDCLK+AKTE+E+KRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLL
Sbjct  969   QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLL  1028

Query  1152  tpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKNSVKAYLDC  1211
             TPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVK+SVKAYLDC
Sbjct  1029  TPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDC  1088

Query  1212  VSRARNekekkecekLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKDVLAK  1271
             VSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ +VLAK
Sbjct  1089  VSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAK  1148

Query  1272  ESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekke  1331
             ESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE
Sbjct  1149  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1208

Query  1332  cekLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRVAIMKCLDGLSDEEKLKYLQEARE  1391
             CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDR AIMKCLDGLSDEEKLKYLQEARE
Sbjct  1209  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1268

Query  1392  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1451
             KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD
Sbjct  1269  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1328

Query  1452  PTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1511
             PTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF
Sbjct  1329  PTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1388

Query  1512  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalggdk  1571
             KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+K
Sbjct  1389  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK  1448

Query  1572  kdddkekskkPTAEAKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddkk  1631
             KDDDKEKSKK+TAEAK ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKK
Sbjct  1449  KDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK  1508

Query  1632  ktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1691
             KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG
Sbjct  1509  KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1568

Query  1692  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1751
             TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD
Sbjct  1569  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1628

Query  1752  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1811
             GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS
Sbjct  1629  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1688

Query  1812  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1871
             MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ
Sbjct  1689  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1748

Query  1872  STKTLSREHEEITTSPKGGN  1891
             STKTLSREHEEITTSPKGGN
Sbjct  1749  STKTLSREHEEITTSPKGGN  1768


 Score =  159 bits (586),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 174/204 (86%), Positives = 182/204 (90%), Gaps = 4/204 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDNSTETKTNFDG  59
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  60   EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  117
               EETQTQMDSG+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  118  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDN  176
            DQENNGYQEE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  177  STETKTNFDGEKSEETQTQMDSGD  200
            +TETKTNFD  KSEE   + +  +
Sbjct  181  PTETKTNFDEYKSEEITNDSNDQE  204

10) HPPC18_02525 in NC_017742


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1885 bits (7162),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1667/1769 (95%), Positives = 1714/1769 (97%), Gaps = 4/1769 (0%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDG  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
                EETQTQMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  178
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179   STETKTNFDGEKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFVPL  238
             +TETKTNFD  KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  239   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  298
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  299   EIEDKNPLKAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  358
             EIEDKNPL+AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  359   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqke  418
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  419   lqeYKDCIKNAKTEAERNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  478
             LQEYKDCIKNAKTEAE+N CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  479   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKK  538
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  539   CLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKA  598
             CLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  599   YLDCVSQakteaekkeceklltpeakkkleeakesvkaYLDCVSQakteaekkecekllt  658
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAK SVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  659   PEAKKLLEQQALDCLKNAKTEAERKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteae  718
             PEAKKLLEQQALDCLK+AKT+ ERK+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  719   kkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQEVKR  778
             KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLE+E K 
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  779   SVKAYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECE  838
             SVK YLDCVSQA+TEAEKKECEKLLTPEA+K LEEAK S+K Y DCVS+AR E EK+ECE
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  839   KLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekkacekLLTPEAKKLLEQEVKKSVKA  898
             KLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+ CEKLLTPEA+K LE E KKSVK 
Sbjct  841   KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLE-EAKKSVKV  899

Query  899   YLDCVSQakteaekka-ceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLL  957
             YLDCVSQA+TEAEKK     L     K   +E KKSVKAYLDCVSRARNEKEKKECEKLL
Sbjct  900   YLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLL  959

Query  958   TPEAKKLLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNek  1017
             TPEAKK+LEQQALDCLK+AKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN K
Sbjct  960   TPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKK  1019

Query  1018  ekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVK  1077
             E+K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVK
Sbjct  1020  ERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK  1079

Query  1078  KSVKAYLDCVSRARNekekkecekLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPK  1137
             KSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PK
Sbjct  1080  KSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPK  1139

Query  1138  DLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1197
             DLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSR
Sbjct  1140  DLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1199

Query  1198  ARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1257
             ARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK
Sbjct  1200  ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1259

Query  1258  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1317
             LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA
Sbjct  1260  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1319

Query  1318  SECLDNLDDPTDQEAIEKCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1377
             SECLDNLDDPTDQ+AIE+CLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAK
Sbjct  1320  SECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1379

Query  1378  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksleak  1437
             GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAK
Sbjct  1380  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK  1439

Query  1438  lakalggdkkdddkekskkPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1497
             LAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE
Sbjct  1440  LAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1499

Query  1498  NGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1557
             NGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV
Sbjct  1500  NGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1559

Query  1558  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1617
             AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA
Sbjct  1560  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1619

Query  1618  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1677
             GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY
Sbjct  1620  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1679

Query  1678  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1737
             ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK
Sbjct  1680  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1739

Query  1738  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1766
             SVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1740  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1768

11) cag7 in NC_020509


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1875 bits (7122),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1668/1760 (95%), Positives = 1716/1760 (98%), Gaps = 1/1760 (0%)

Query  139   ETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNPTETKTNFDEYESEETQT  198
             ETSKKTQQHSPQDLSNEE+T AN+FEDSSKESKESSDH LDN TETKTNFDEYE EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  258
             QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskeskessdHHLDNPTETKTNF  318
             EETQ+DLIDDETSKKTQQHSPQDLSNEEATEAN+FEDSSKESKESSDH LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADM  618
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESLKAYKDCVSQAKTEDEKKECeklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKESLKAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   RQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             +QALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  859   tpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDC  918
             TPEAKKLLEEAKESLKAYKDC+S+ARNE E++ CEKLLTPEAKKLLE+E K SVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  919   ISKARNEREKQECeklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeak  978
             +S+AR E EK+ECEKLLTPEA+K LEEAK S+K Y DCVS+AR E EKKECEKLLTPEA+
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  979   klleeeakeSVKAYLDCVSQakteaekkeceklltpeakklleeakksvkaYLDCVSQak  1038
             KLLE+E K SVKAYLDCVS+A+ E EK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1039  teaekke-ceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  1097
             TEAEKKE    L     K L +E KKSVKAYLDCVS+A+ E EKKECEKLLTPEAKK+LE
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLE  968

Query  1098  QQALDCLKNAKTEAEKKRCVKDIPKDLQKKVLAKESVKAYLDCVSRARNekekkecekll  1157
             QQALDCLKNAKTE+EKKRCVKD+PKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLL
Sbjct  969   QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLL  1028

Query  1158  tpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDC  1217
             TPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDC
Sbjct  1029  TPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDC  1088

Query  1218  VSKARNEREKQECEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAK  1277
             VS+ARNE+EK+ECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ NVLAK
Sbjct  1089  VSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAK  1148

Query  1278  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQE  1337
             ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+ARNEKEK+E
Sbjct  1149  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1208

Query  1338  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1397
             CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE
Sbjct  1209  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1268

Query  1398  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1457
             KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD
Sbjct  1269  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1328

Query  1458  PTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1517
             PTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF
Sbjct  1329  PTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1388

Query  1518  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLANALGGNk  1577
             KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLA+ALGGNK
Sbjct  1389  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK  1448

Query  1578  kdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkk  1637
             KDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK
Sbjct  1449  KDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK  1508

Query  1638  ktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1697
             KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG
Sbjct  1509  KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1568

Query  1698  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1757
             TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD
Sbjct  1569  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1628

Query  1758  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1817
             GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS
Sbjct  1629  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1688

Query  1818  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1877
             MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ
Sbjct  1689  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1748

Query  1878  STKTLSREHEEITTSPKGGN  1897
             STKTLSREHEEITTSPKGGN
Sbjct  1749  STKTLSREHEEITTSPKGGN  1768


 Score =  165 bits (608),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 180/199 (91%), Positives = 188/199 (95%), Gaps = 0/199 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TEAN+FEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneed  120
            Y  EETQTQMDS GNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  nqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDN  180
            +QENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+T AN+FEDSSKESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETKTNFDEYESEETQTQ  199
            PTETKTNFDEY SEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

12) HPV225_0522 in NC_017355


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1873 bits (7113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1705/1768 (97%), Positives = 1742/1768 (99%), Gaps = 0/1768 (0%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YKSEETQTQMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
             Y  EETQTQMDSGGNETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  180
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   STETKTNFDGEKSEEITNNSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  240
             +TETKTNFD  KSEEITN+SNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqke  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   lqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480
             LQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQALDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKK LEQQ LDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekllt  660
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEAKKLLEQQALDCLKNAKTDEERKKCLKNLPKDLQKKVLAKESVKAYLDCVSRARNeke  720
             PEAKKLLEQQALDCLK+AKTDEERKKCLK+LPKDLQKKVLAKESVKAYLDCVS+A+ E E
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  721   kkeceklltpeakklleeakeslkaYKDCVSRSRNEKEKQECeklltpeakklleeeake  780
             KKECEKLLTPEAKKLLEEAKESLKAYKDCVSR+RNEKEK+ECEKLLTPEAKKLLEEEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  781   SVKAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQakteaekkece  840
             SVK YLDCVSQARTEAEKKECEKLLTPEA+KKLEEAKKSVK YLDCVSQA+TEAEKKECE
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  841   klltpeakklleeeakeSVKAYLDCVSRARNekekkeceklltpeakkkleeakksvkaY  900
             KLLTPEA+KLLE+E K SVKAYLDCVSRARNEKEK+ECEKLLTPEA+KKLEEAKKSVK Y
Sbjct  841   KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVY  900

Query  901   LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLT  960
             LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT
Sbjct  901   LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT  960

Query  961   PEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNeke  1020
             PEAKK+LEQQALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE
Sbjct  961   PEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKE  1020

Query  1021  kkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKK  1080
             +K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKK
Sbjct  1021  RKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1080

Query  1081  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKD  1140
             SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKD
Sbjct  1081  SVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKD  1140

Query  1141  LQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1200
             LQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA
Sbjct  1141  LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1200

Query  1201  RNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL  1260
             RNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL
Sbjct  1201  RNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL  1260

Query  1261  KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQAS  1320
             KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQAS
Sbjct  1261  KYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQAS  1320

Query  1321  ECLDNLDDPTDQEAIEKCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG  1380
             ECLDNLDDPTDQ+AIE+CLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG
Sbjct  1321  ECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKG  1380

Query  1381  YPLLPMDFKNGGDIATINATNVDTDKIASDNPIYASIEPDITKQYETEKTIkdknleakl  1440
             YPLLPMDFKNGGDIATINATNVD+DKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKL
Sbjct  1381  YPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKL  1440

Query  1441  akalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDEN  1500
             AKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDEN
Sbjct  1441  AKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDEN  1500

Query  1501  GNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA  1560
             GNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA
Sbjct  1501  GNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVA  1560

Query  1561  KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG  1620
             KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG
Sbjct  1561  KDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAG  1620

Query  1621  MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA  1680
             MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA
Sbjct  1621  MLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYA  1680

Query  1681  LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS  1740
             LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS
Sbjct  1681  LGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKS  1740

Query  1741  VVDEIIKQSTKTLSREHEEITTSPKGGN  1768
             VVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1741  VVDEIIKQSTKTLSREHEEITTSPKGGN  1768

13) cagY in NC_017367


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1870 bits (7105),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1655/1808 (92%), Positives = 1707/1808 (95%), Gaps = 51/1808 (2%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YELEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
             YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   YTEAKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  240
              TE+KTNFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKC  360
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEADKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480
             LQEYKDCIKNAKTEA+KNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKQECeklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKESLKAYKDCVSQAK EAEK+ECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekllt  660
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKE  720
             PEAKKLLEQQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKES+KAY            
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAY------------  708

Query  721   KQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeeake  780
                                        DCVS+A+ E EK+ECEKLLTPEAKKLLEE    
Sbjct  709   --------------------------LDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-  741

Query  781   SVKAYLDCVSQakteaekkeceklltpeakkk-leeakksvkaYLDCVSQakteaekkec  839
             S+KAY DCVS+A+ E EKKECEKLLTPEAKK   EEAK SVK YLDCVSQA+TEAEKKEC
Sbjct  742   SLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKEC  801

Query  840   eklltPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL---AKESLK  890
             EKLLTPEA+K LE+        LDC+ +A+TEAEKK C K L  +  +K+L    K S+K
Sbjct  802   EKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVK  860

Query  891   AYKDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECekll  950
             AY DCVSRARNEKEKQECEKLLTPEA+K LEEAKKS+K Y DCVS+AR E EK+ECEKLL
Sbjct  861   AYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLL  920

Query  951   tpeakklleeakkslkay-kDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKT  1009
             TPEA+KLLE+  K       DCVSRARNEKEK+ECEKLLTPEAKK+LEQQALDCLKNAKT
Sbjct  921   TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKT  980

Query  1010  EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeak  1069
             E+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE++ CEKLLTPEAKKLLEEAK
Sbjct  981   ETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAK  1040

Query  1070  eslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQE  1129
             ESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+ARNE+EK+E
Sbjct  1041  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1100

Query  1130  CEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQ  1189
             CEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ NVLAKESLKAYKDCLSQ
Sbjct  1101  CEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQ  1160

Query  1190  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKF  1249
             ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKF
Sbjct  1161  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKF  1220

Query  1250  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1309
             LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART
Sbjct  1221  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1280

Query  1310  DEEKRKCQNLYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLE  1369
             DEEKRKCQNLYSDLIQEIQNKR+QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLE
Sbjct  1281  DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLE  1340

Query  1370  GLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1429
             GLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT
Sbjct  1341  GLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1400

Query  1430  NVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkst  1489
             NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST
Sbjct  1401  NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST  1460

Query  1490  aeakvesNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKTETQDETSPVK  1549
             AEAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKTE QDETSPVK
Sbjct  1461  AEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVK  1520

Query  1550  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1609
             QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY
Sbjct  1521  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1580

Query  1610  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1669
             GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG
Sbjct  1581  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1640

Query  1670  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1729
             FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL
Sbjct  1641  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1700

Query  1730  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  1789
             GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI
Sbjct  1701  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  1760

Query  1790  TTSPKGGN  1797
             TTSPKGGN
Sbjct  1761  TTSPKGGN  1768

14) HPSH169_02700 in NC_017740


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1864 bits (7082),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1588/1761 (91%), Positives = 1653/1761 (94%), Gaps = 51/1761 (2%)

Query  137   ETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDNSTETKTNFDEYKSEETQT  196
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKES+ESSDH LDN TETKTNFDEY  EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  197   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  254
             QMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  255   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKANF  314
             EETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN TETK+NF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  315   DEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  374
             DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  375   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  434
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  435   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  494
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  495   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  554
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  555   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  614
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  615   SVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKD  674
             SVKAYKDCVS+ARNE E+K CEKLLTPEAKK LE+Q LDCLKNAKT+ E+K+C+KDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  675   LQSDILAKESVKAYRDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQA  734
             LQSDILAKES+KAY+DCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  735   ktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkeceklltPEAKKLLE  794
             KTE+EKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAKTE+EKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  795   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLA---------------------------  827
             QQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLA                           
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  828   -----------KESLKVYLDCVSQakteaekkeceklltpeakkl-leeakeslkaYKDC  875
                        KESLK Y DCVS+A+ E EKKECEKLLTPEAKKL  EEAKES+K Y DC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  876   VSRARNEKEKQECEKLLTPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQ  929
             VS+AR E EK+ECEKLLTPEA+K LE+        LDC+ +A+TEAEKK C K L  +  
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-A  847

Query  930   KKVL---AKESLKVYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCLSQA  986
             +K+L    K S+K YLDCVS+A+ E EK+ECEKLLTPEA+K LEEAK S+K Y DC+SQA
Sbjct  848   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  907

Query  987   RNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKLL  1046
             R E E+K CEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEA+K+L
Sbjct  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  1047  EQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECekl  1106
             EQQALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE++ CEKL
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1107  ltpeakklleeakeslkaYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLD  1166
             LTPEAKKLLEEAKESLKAYKDC+SQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1167  CVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLA  1226
             CVSRARNEKEK+ECEKLLTPEARKFLAKQ LSCLEKARNEEE+KACLKN+PKDLQ NVLA
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1227  KESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1286
             KESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1287  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1346
             ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1347  EKAVLDCLKTARSDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1406
             EKAVLDCLKTAR+DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1407  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1466
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1467  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggn  1526
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1527  kkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddk  1586
             KKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1587  kktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1646
             KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1647  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1706
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1707  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1766
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1767  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1826
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1827  QSTKTLSREHEEITTSPKGGN  1847
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768


 Score =  176 bits (651),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 178/199 (90%), Positives = 185/199 (93%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+T AN+FEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
               EETQTQMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDN  178
            DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES+ESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179  STETKTNFDEYKSEETQTQ  197
            +TETKTNFDEYKSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

15) HPSAT_04140 in NC_017359


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1859 bits (7062),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1607/1769 (91%), Positives = 1663/1769 (95%), Gaps = 51/1769 (2%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDG  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDH LDN TETKTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
                EETQTQMDSG+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119   dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDN  178
             DQENNGYQEE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179   STETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  238
             +TETKTNFD  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  239   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  298
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  299   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  358
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  359   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqke  418
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  419   lqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDL  478
             LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  479   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  538
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  539   CLKDLPKDLQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKA  598
             CLKDLPKDLQSDILAKES+KAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  599   YLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekllt  658
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  659   PEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL--------------------  698
             PEA+KLLEQQALDCLK+AKT+ E+K+C+KDLPKDLQKKVL                    
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  699   ------------------AKESVKAYLDCVSQakteaekkeceklltpeakkl-leeake  739
                               AKES+KAY DCVS+A+ E EKKECEKLLTPEAKKL  EEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  740   slkaYKDCVSRARNekekkecekLLTPEAKKLLEQQA------LDCLKNAKTEAEKKRCV  793
             S+K Y DCVS+AR E EKKECEKLLTPEA+K LE+        LDC+ +A+TEAEKK C 
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  794   KDLPKDLQKKVL---AKESVKAYLDCVSQakteaekkeceklltPEARKLLEEAKESLKA  850
             K L  +  +K+L    K SVKAYLDCVS+A+ E EK+ECEKLLTPEARK LEEAK S+K 
Sbjct  841   KLLTPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKV  899

Query  851   YKDCVSRARNekekkecekLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekkecekll  910
             Y DCVS+AR E EKKECEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLL
Sbjct  900   YLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLL  959

Query  911   tPEARKFLAKQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNek  970
             TPEA+KFL +QALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN K
Sbjct  960   TPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKK  1019

Query  971   ekkecekLLTPEARKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVK  1030
             E+K CEKLLTPEA+KLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVK
Sbjct  1020  ERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK  1079

Query  1031  KSVKAYLDCVSQakteaekkeceklltPEARKFLAKQALSCLEKARNEEERKACLKNIPK  1090
             KSVKAYLDCVS+A+ E EKKECEKLLTPEARKFLAKQ LSCLEKARNEEE+KACLKN+PK
Sbjct  1080  KSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPK  1139

Query  1091  DLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1150
             DLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSR
Sbjct  1140  DLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1199

Query  1151  ARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1210
             ARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK
Sbjct  1200  ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1259

Query  1211  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1270
             LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA
Sbjct  1260  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1319

Query  1271  SECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1330
             SECLDNLDDPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAK
Sbjct  1320  SECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1379

Query  1331  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleak  1390
             GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK
Sbjct  1380  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK  1439

Query  1391  lakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1450
             LAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE
Sbjct  1440  LAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1499

Query  1451  NGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1510
             NGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV
Sbjct  1500  NGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1559

Query  1511  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1570
             AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA
Sbjct  1560  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1619

Query  1571  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1630
             GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY
Sbjct  1620  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1679

Query  1631  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1690
             ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK
Sbjct  1680  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1739

Query  1691  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1719
             SVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1740  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1768

16) HPSH_04285 in NC_010698


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1834 bits (6968),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1605/1760 (92%), Positives = 1658/1760 (95%), Gaps = 42/1760 (2%)

Query  137   ETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDNSTETKTNFDGEKSEETQT  196
             ETSKKTQQHSPQDLSNEE+  ANHFEDSS ESKE+SDH LDN TETKTNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  197   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  254
             QMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  255   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  314
             EE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDH LDN+TETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  315   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  374
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  375   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  434
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  435   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  494
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  495   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  554
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  555   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  614
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  615   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  674
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  675   LQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  734
             LQSDILAKES+KAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  735   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEARKLLE  794
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  795   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  854
             QQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  855   tpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDC  914
             TPEAKKLLEEAKESLKAYKDCVS+AR E EKKECEKLLTPEAKKLLEEEAKESVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  915   VSRARNEKEKQECEKLLTPEARKKLEEAKKSVKAYLDCVSQakteaekkeceklltPEAK  974
             VS+AR E EK+ECEKLLTPEARKKLEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEA+
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  975   KLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL-AKESLKAYKDCVSRAR  1026
             KLLEQ+        LDC+  A+ E EK+ C K L  + +KK+  AK S+K Y DCVS+AR
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1027  Nekekke-ceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEARKLLE  1085
              E EKKE    L     K L +E K S+KAY DCVSRARNEKEKKECEKLLTPEA+K+LE
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLE  968

Query  1086  E-------------------------------AKKSVKAYLDCVSRARNekekkecekLL  1114
             +                               AK SVKAY+DCVSRARN KE+K CEKLL
Sbjct  969   QQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLL  1028

Query  1115  TPEARKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDC  1174
             TPEA+KLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDC
Sbjct  1029  TPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDC  1088

Query  1175  VSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLAK  1234
             VSRARNEKEK+ECEKLLTPEARKFLAKQ LSCLEKARNEEE+KACLKN+PKDLQ NVLAK
Sbjct  1089  VSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAK  1148

Query  1235  ESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQE  1294
             ESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVK+SVKAYLDCVSRARNEKEK+E
Sbjct  1149  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1208

Query  1295  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1354
             CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE
Sbjct  1209  CEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE  1268

Query  1355  KAVLDCLKTAKTDEEKRKCQNLYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDD  1414
             KAVLDCLKTA+TDEEKRKCQNLYSDLIQEIQNKR+QSKQNQLSKTERLHQASECLDNLDD
Sbjct  1269  KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDD  1328

Query  1415  PTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1474
             PTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF
Sbjct  1329  PTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDF  1388

Query  1475  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnk  1534
             KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK
Sbjct  1389  KNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNK  1448

Query  1535  kdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkk  1594
             KDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK
Sbjct  1449  KDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKK  1508

Query  1595  ktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1654
             KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG
Sbjct  1509  KTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNG  1568

Query  1655  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1714
             TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD
Sbjct  1569  TMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVD  1628

Query  1715  GYVNNHFMKRIGFAVVASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1774
             GYVNNHFMKRIGFAV+ASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS
Sbjct  1629  GYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGS  1688

Query  1775  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1834
             MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ
Sbjct  1689  MQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQ  1748

Query  1835  STKTLSREHEEITTSPKGGN  1854
             STKTLSREHEEITTSPKGGN
Sbjct  1749  STKTLSREHEEITTSPKGGN  1768


 Score =  175 bits (649),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 174/199 (88%), Positives = 181/199 (91%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESS+H LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            Y  EETQTQMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDN  178
            DQENNGYQEE Q+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSS ESKE+SDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179  STETKTNFDGEKSEETQTQ  197
            +TETKTNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

17) HPLT_02610 in NC_017362


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1830 bits (6950),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1640/1798 (92%), Positives = 1692/1798 (95%), Gaps = 51/1798 (2%)

Query  137   ETSKKTQQHSPQDLSNEEATEVNHFEDLLKEESSN--NHLDNPTETKTHFDGDKSEETQT  194
             ETSKKTQQHSPQDLSNEEATE NHFED  KE   +  + LDN TETKT+FD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  195   QIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLneeddqenneyq  254
             Q+DS GNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  NEEDDQENN YQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  255   edtqIDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDLLKEESSD--NHLDNPTETKTHF  312
             E+TQIDLIDDETSKKTQQHSPQDLSNEEATE NHFED  KE      + LDNPTETKT+F
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  313   DGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  372
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  373   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  432
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  433   RAFYECIGNGGNYEECLKLIKDKKLQEQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  492
             RAFYECI+NGGNYEECLKLIKDKKLQ+QMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  493   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  552
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  553   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  612
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  613   SVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  672
             SVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  673   LQSDILAKESLKAYKDCVSRakneaekkeceklltpeakklleeeakeSVKAYLDCVSQA  732
             LQSDILAKESLKAYKDCVS+AKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  733   ktetekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  792
             KTE+EKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  793   QQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  852
             QQALDCLK+AKT+ ++K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  853   tPEARKLLEEAKESLKAYKDCVSRakneaekkeceklltpeakklleeeakeSVNAYLDC  912
             TPEA+KLLEEAKESLKAYKDCVSRA+NE EKKECEKLLTPEAKKLLEEEAKESV+ YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  913   VSQAktetekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  972
             VSQA+TE+EKKECEKLLTPEA+KKLEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEA+
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  973   KLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKV-LAKESVKAYLDCVSQak  1024
             KLLEQ+        LDC+  A+ E EK+ C K L  + +KK+  AK SVK YLDCVSQA+
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1025  teaekkeceklltPEARKLLE-EAKESLKAYKDCVSRakneaekkeceklltpeakklle  1083
             TEAEKKECEKLLTPEARKLLE E K S+KAY DCVSR                       
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSR-----------------------  945

Query  1084  eakesvkaYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKD  1143
                            ARNEKEKKECEKLLTPEAKK+LEQQALDCLKNAKTE+EKKRCVKD
Sbjct  946   ---------------ARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKD  990

Query  1144  LPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCL  1203
             LPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKDCL
Sbjct  991   LPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCL  1050

Query  1204  SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAR  1263
             SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAR
Sbjct  1051  SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAR  1110

Query  1264  KFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC  1323
             KFLAKQVL+CLEKA NEEE+KACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC
Sbjct  1111  KFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC  1170

Query  1324  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDK  1383
             EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDK
Sbjct  1171  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDK  1230

Query  1384  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1443
             AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL
Sbjct  1231  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1290

Query  1444  YSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALI  1503
             YSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSE+ALI
Sbjct  1291  YSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKALI  1350

Query  1504  LGIKRQADEVDLIYSELRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1563
             LGIKRQADEVDLIYS+LRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD
Sbjct  1351  LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1410

Query  1564  NPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstakakaesnkI  1623
             NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA AK ESNKI
Sbjct  1411  NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKI  1470

Query  1624  DKDVAETAKNISEIALKNKKEKNGEFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPT  1683
             DKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPT
Sbjct  1471  DKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPT  1530

Query  1684  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1743
             FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT
Sbjct  1531  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1590

Query  1744  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1803
             PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS
Sbjct  1591  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1650

Query  1804  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1863
             FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF
Sbjct  1651  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1710

Query  1864  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1921
             YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1711  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  143 bits (526),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 154/201 (77%), Positives = 165/201 (83%), Gaps = 4/201 (1%)

Query  1    MNEENDKLETSKKTQQDSPQDLSNEEATEVNHFEDLLKEESSD--NHLDNPTETKTHFDG  58
            MNEENDKLETSKKTQQ+SPQDLSNEEATE NHFED  KE      + LDN TETKT+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  59   DKSEETQTQIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLneed  118
               EETQTQ+DS GNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119  dqenneyqeeTQIDLIDDETSKKTQQHSPQDLSNEEATEVNHF--EDLLKEESSNNHLDN  176
            DQENN YQEETQIDLIDDETSKKTQQHSPQDLSNEEATE NHF        ESS++ LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  177  PTETKTHFDGDKSEETQTQID  197
            PTETKT+FD  KSEE   + +
Sbjct  181  PTETKTNFDEYKSEEITNDSN  201

18) cagY in NC_017368


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1828 bits (6943),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1563/1821 (86%), Positives = 1640/1821 (91%), Gaps = 78/1821 (4%)

Query  1     MNEENDKFETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDE  60
             MNEENDK+ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+H LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
             YE EETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDN  180
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+H LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   PTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  240
             PTETKTNFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480
             LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSKARNekekkeceklltpeakklleeakeslkaYKDCVSRARN  540
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKK LE+         DC+  A+ 
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVL------DCLKNAKT  534

Query  541   EKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECEKLLTPEAKKLLEQQ  600
             + E++ C     P   +    AK SLKAYKDCVS+A+NE EK+ECEKLLTPEAKKLLE++
Sbjct  535   DEERKKC-LKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEE  593

Query  601   A-------LDCLKNAKTDEERNECLKNI-PQDLQKELLADMSVKAYKDCVSKARNekekk  652
             A       LDC+ +AKT+ E++EC K + P+  +K   A  SVKAY DCVS+A+ E EKK
Sbjct  594   AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKK  653

Query  653   eceklltpeakklleeakeslkaYKDCVSRARNEKEKQECeklltpeakklleeakkslk  712
             ECEKLLTPEAKKLLE+         DC+  A+ + E++ C     P   +    AK S+K
Sbjct  654   ECEKLLTPEAKKLLEQQAL------DCLKSAKTDEERKKC-LKDLPKDLQKKVLAKESVK  706

Query  713   aykDCVSRARNEKEKQECEKLLTPEAKKLLEQ--QAL----DCLKNAKTEAEKKRCVKDL  766
             AY DCVS+A+ E EK+ECEKLLTPEAKKLLE+  ++L    DC+  A+ E EKK C K L
Sbjct  707   AYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLL  766

Query  767   PKDLQKKVL---AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  823
               +  KK+L   AKESVK YLDCVS+AR E EKKECEKLLTPEA+K LEEAK S+K Y D
Sbjct  767   TPE-AKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLD  825

Query  824   CVSRARNEKEKQECEKLLTPEAKKLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKD  876
             CVS+AR E EK+ECEKLLTPEA+KLLEQ+        LDC+  A+ E EK+ C K L  +
Sbjct  826   CVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE  885

Query  877   LQKKV-LAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQA  935
              +KK+  AK SVK YLDCVS+AR E EK+EC                             
Sbjct  886   ARKKLEEAKKSVKVYLDCVSQARTEAEKKEC-----------------------------  916

Query  936   RNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKLL  995
                      EKLLTPEA+KLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEAKK+L
Sbjct  917   ---------EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  996   EQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekl  1055
             EQQALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKL
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1056  ltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLD  1115
             LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1116  CVSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKARNEEERKACLKNIPKDLQKNVLA  1175
             CVSRARNEKEK+ECEKLLTPEARKFLAKQVL+CLEKARNEEE+KACLKN+PKDLQ NVLA
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1176  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1235
             KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1236  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1295
             ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1296  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1355
             EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1356  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1415
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1416  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggn  1475
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1476  kkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1535
             KKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1536  KKTETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1595
             KKTE QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1596  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1655
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1656  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1715
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1716  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1775
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1776  QSTKTLSREHEEITTSPKGGN  1796
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768

19) K751_03260 in NC_021218


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1815 bits (6894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1659/1808 (92%), Positives = 1707/1808 (95%), Gaps = 51/1808 (2%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKESSDH LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
             YE EETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   PTEAKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  240
             PTE+KTNFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEDEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDL  480
             LQEYKDCIKNAKTE EKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekllt  660
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteae  720
             PEAKKLLEQQALDCLKSAKTDEERKKCL    KDL K +                     
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCL----KDLPKDL---------------------  695

Query  721   kkeceklltPEARKLLEEAKESLKAYKDCVSRARNekekkeceklltpeakklleeeake  780
                         +K+L  AKES+KAY DCVS+A+ E EKKECEKLLTPEAKKLLEE    
Sbjct  696   -----------QKKVL--AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-  741

Query  781   SVKAYLDCVSQakteaekkeceklltpeakkk-leeakksvkaYLDCVSQakteaekkec  839
             S+KAY DCVS+A+ E EKKECEKLLTPEAKK   EEAK SVK YLDCVSQA+TEAEKKEC
Sbjct  742   SLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKEC  801

Query  840   eklltPEAKNLLEQQA------LDCLKNAKTESEKKRCVKDLPKDLQKKVL---AKESVK  890
             EKLLTPEA++ LE+        LDC+ +A+TE+EKK C K L  +  +K+L    K SVK
Sbjct  802   EKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVK  860

Query  891   AYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSQAKTEDEKKECekll  950
             AYLDCVSRARNEKEK+ECEKLLTPEA+K LEEAK S+K Y DCVSQA+TE EKKECEKLL
Sbjct  861   AYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLL  920

Query  951   tpeakkl-leeakeslkaYKDCVSRARNEKEKQECEKLLTPEAKNLLEQQALDCLKNAKT  1009
             TPEA+KL  +E K S+KAY DCVSRARNEKEK+ECEKLLTPEAK++LEQQALDCLKNAKT
Sbjct  921   TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKT  980

Query  1010  ESEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeak  1069
             E+EKKRCVKDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAK
Sbjct  981   ETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAK  1040

Query  1070  eslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNEKEKQE  1129
             ESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVSRARNEKEK+E
Sbjct  1041  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKE  1100

Query  1130  CEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQ  1189
             CEKLLTPEARKFLAKQVLSCLEKARNEEE+KACLKN+PKDLQ NVLAKESLKAYKDCLSQ
Sbjct  1101  CEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQ  1160

Query  1190  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKF  1249
             ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKF
Sbjct  1161  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKF  1220

Query  1250  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1309
             LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART
Sbjct  1221  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1280

Query  1310  DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLE  1369
             DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLE
Sbjct  1281  DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLE  1340

Query  1370  GLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1429
             GLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT
Sbjct  1341  GLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1400

Query  1430  NVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkst  1489
             NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST
Sbjct  1401  NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST  1460

Query  1490  teaktesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVK  1549
             +EAK ESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTE QDETSPVK
Sbjct  1461  AEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVK  1520

Query  1550  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1609
             QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY
Sbjct  1521  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1580

Query  1610  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1669
             GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG
Sbjct  1581  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1640

Query  1670  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1729
             FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL
Sbjct  1641  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1700

Query  1730  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  1789
             GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI
Sbjct  1701  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  1760

Query  1790  TTSPKGGN  1797
             TTSPKGGN
Sbjct  1761  TTSPKGGN  1768

20) HPELS_03975 in NC_017063


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1811 bits (6878),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1549/1791 (87%), Positives = 1614/1791 (91%), Gaps = 107/1791 (5%)

Query  142   ETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSDNHLDNPTETKTHFDKDKLEETQT  201
             ETSKK+QQ+SPQDLSNEEATEANHFED  KESKESSD+ LDN TETKT+FD   LEETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  202   QIDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLNKEDDQENNGYQ  261
             Q+DSGGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  N EDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  262   EETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDSLKEESSD--NHLDNPTETKTNF  319
             EETQ DLIDDETSKKTQQHSPQDLSNEEATE NHFEDS KE      + LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  320   DGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFVPLEDKSSRFS  379
             D  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  380   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  439
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  440   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  499
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  500   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfrkelelqkelqeYKDCI  559
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  560   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  619
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  620   SVKAYKDCVSRARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  679
             SVKAYKDCVSRARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  680   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSka  739
             LQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVS+A
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  740   kneaekkeceklltpeakkkleeakksvkaYLDCVSQAKTEAEKQECEKLLTPEAKKLLE  799
             K EAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEK+ECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  800   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSQAKTEAERKECEKLL  859
             QQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLDCVSQAKTEAE+KECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  860   TPEARKLLEEAKKSVKAYKDCVSRARNekekkecekLLTPEARKLLEE-AKKSVKAYLDC  918
             TPEA+KLLEEAK S+KAYKDCVSRARNEKEKKECEKLLTPEA+KLLEE AK SVK YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  919   VSQakteaekkeceklltPEARKLLEEAKKSVKLFGLRISGKLSGKKRREIDSRPEARKL  978
             VSQA+TEAEKKECEKLLTPEARK LEEAKKSVK++                         
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVY-------------------------  823

Query  979   LENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL---AKESVRVYLDCVSkakteaekke  1035
                  LDC+ +A+TEAEKK C K L  +  +K+L    K SV+ YLDCVS+A+ E EK+E
Sbjct  824   -----LDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKQE  877

Query  1036  ceklltPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEQEVKKSVK  1095
             CEKLLTPEARK LEEAK SVK Y DCVS+AR E EK+ECEKLLTPEA+KLLEQEVKKSVK
Sbjct  878   CEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVK  937

Query  1096  AYLDCVSRARNekekkecekLLTPEARKFLENQALDCLKNAKTEAEKKRCVKDLPKDLQK  1155
             AYLDCVSRARNEKEKKECEKLLTPEA+KFLE+QALDCLKNAKTE+EKKRCVKDLPKDLQK
Sbjct  938   AYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQK  997

Query  1156  KVLAKES--------------------------------------VKAYLDCVSRARNek  1177
             KVLAKES                                      +KAY DC+S+ARNE 
Sbjct  998   KVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEE  1057

Query  1178  ekke-ceklltpeakklleeakesvkaYLDCVSRARNekekkecekLLTPEARKLLEE--  1234
             E++     L     K L +E K SVKAYLDCVSRARNEKEKKECEKLLTPEARK+L    
Sbjct  1058  ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQV  1117

Query  1235  -----------------------------AKESLKAYKDCLSQARNETERRACEKLLTPE  1265
                                          AKESLKAYKDCLSQARNE ERRACEKLLTPE
Sbjct  1118  LSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPE  1177

Query  1266  ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKELQQKDKAIKDCLK  1325
             ARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFL KELQQKDKAIKDCLK
Sbjct  1178  ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLK  1237

Query  1326  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE  1385
             NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE
Sbjct  1238  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE  1297

Query  1386  IqnkkaqnkqnqLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQA  1445
             IQNK++Q+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+ALILGIKRQA
Sbjct  1298  IQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQA  1357

Query  1446  DEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI  1505
             DEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI
Sbjct  1358  DEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI  1417

Query  1506  EPDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTTETKAESNKIDKDVAET  1565
             EPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+T+E+K ESNKIDKDVAET
Sbjct  1418  EPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAET  1477

Query  1566  AKNISEIALKNKKEKSGDFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYT  1625
             AKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYT
Sbjct  1478  AKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYT  1537

Query  1626  PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM  1685
             PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM
Sbjct  1538  PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM  1597

Query  1686  IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI  1745
             IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI
Sbjct  1598  IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI  1657

Query  1746  IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS  1805
             IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS
Sbjct  1658  IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS  1717

Query  1806  IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1856
             IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1718  IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  164 bits (606),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 159/194 (82%), Positives = 170/194 (88%), Gaps = 7/194 (3%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSD--NHLDNSTETKTQETK  58
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFED+ KE      + LDN TETKT    
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKT----  56

Query  59   THFDEDKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQK  118
             +FDE  LEETQTQMDSGGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q 
Sbjct  57   -NFDEYELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQE  115

Query  119  LNKEDDQENNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSD  178
             N EDDQENNGYQEETQ DLIDDETSKK+QQ+SPQDLSNEEATEANHFED  KESKESSD
Sbjct  116  PNEEDDQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSD  175

Query  179  NHLDNPTETKTHFD  192
            + LDNPTETKT+FD
Sbjct  176  HYLDNPTETKTNFD  189


 Score = 38.2 bits (125),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 41/66 (63%), Positives = 47/66 (72%), Gaps = 7/66 (10%)

Query  9    ETSKKAQQDSPQDLSNEEATEANHF--EDPLKEESSDNHLDNSTETKTQETKTHFDEDKL  66
            ETSKK+QQ+SPQDLSNEEATEANHF        ESSD+ LDN+T     ETKT+FDE K 
Sbjct  139  ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPT-----ETKTNFDEYKS  193

Query  67   EETQTQ  72
            EE   +
Sbjct  194  EEITND  199

21) HPSH417_02515 in NC_017739


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1775 bits (6742),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1590/1777 (90%), Positives = 1652/1777 (93%), Gaps = 60/1777 (3%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             Y  EETQTQMDSGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDH LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  179   YTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPL  238
              TETKTNFD  KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  239   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  298
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  299   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  358
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  359   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqke  418
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  419   lqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  478
             LQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  479   QKELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKR  538
             QKELLADMSVKAYKDCVS+ARNE E+K CEKLLTPEAKK LE+Q LDCLKNAKT+ E+K+
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  539   CVKDLPKDLQSDILAKESVKAYRDCVSQARTEAEKKECeklltpeakklleeeakeSVKA  598
             C+KDLPKDLQSDILAKES+KAY+DCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  599   YLDCVSQAktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkecekllt  658
             YLDCVSQAKTE+EKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAKTE+EKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  659   PEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES----------------  702
             PEAKKLLEQQALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKES                
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  703   ----------------------LKAYKDCVSRARNekekkeceklltpeakkl-leeake  739
                                   LKAYKDCVSRARNEKEKKECEKLLTPEAKKL  EEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  740   slkaYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCISQAktetekkec  799
             S+K Y DCVSQARTEAEKKECEKLLTPEA+K LEE  K SVK YLDC+SQA+TE+EKKEC
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKK-SVKVYLDCVSQARTEAEKKEC  839

Query  800   eklltPEARKKLE-EAKKSVKAYLDCVSQAktetekkeceklltPEAKKLLEQQA-----  853
             EKLLTPEARK LE E KKSVKAYLDCVS+A+ E EK+ECEKLLTPEA+K LE+       
Sbjct  840   EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKV  899

Query  854   -LDCLKNAKTEAEKKRCVKDLPKDLQKKVL---AKESLKAYKDCVSRARNekekkecekl  909
              LDC+ +A+TEAEKK C K L  +  +K+L    K S+KAY DCVSRARNEKEKKECEKL
Sbjct  900   YLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKL  958

Query  910   ltpeakklleeakeslkaYKDCVSQARNEEERKACEKLLTPEARKKLEEAKKSVKAYLDC  969
             LTPEAKK+LE+         DC+ +A+ E E+K C K L  + +KK+  AK SVKAY+DC
Sbjct  959   LTPEAKKFLEQQAL------DCLKNAKTETEKKRCVKDLPKDLQKKVL-AKESVKAYVDC  1011

Query  970   VSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEAR  1029
             VSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTPEAR
Sbjct  1012  VSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1071

Query  1030  KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERK  1089
             KLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKQ LSCLEKARNEEE+K
Sbjct  1072  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKK  1131

Query  1090  ACLKNIPKDLQKDVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVK  1149
             ACLKN+PKDLQ +VLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVK
Sbjct  1132  ACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVK  1191

Query  1150  AYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCL  1209
             AYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCL
Sbjct  1192  AYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCL  1251

Query  1210  DGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQSKQNQLS  1269
             DGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKR+QSKQNQLS
Sbjct  1252  DGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLS  1311

Query  1270  KTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRK  1329
             KTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRK
Sbjct  1312  KTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRK  1371

Query  1330  TFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTI  1389
             TFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTI
Sbjct  1372  TFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTI  1431

Query  1390  kdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKE  1449
             KDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKE
Sbjct  1432  KDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKE  1491

Query  1450  KSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATL  1509
             KSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATL
Sbjct  1492  KSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATL  1551

Query  1510  TGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVII  1569
             TGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVII
Sbjct  1552  TGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVII  1611

Query  1570  PLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRS  1629
             PLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRS
Sbjct  1612  PLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRS  1671

Query  1630  ERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGV  1689
             ERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGV
Sbjct  1672  ERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGV  1731

Query  1690  YDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1726
             YDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1732  YDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768

22) cagY in NC_017365


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1761 bits (6688),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1592/1805 (89%), Positives = 1660/1805 (92%), Gaps = 61/1805 (3%)

Query  138   ETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHLDNPTETKTNFDEYESEETQT  197
             ETSKKTQQ SPQDLSNEE+T ANHFEDSSKES+ESSDH LDN TETKTNFDEYE EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  198   QMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEYDQENNGYQ  257
             QMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE DQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  258   EETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHLDNPTETKTNF  317
             EETQ+DLIDDETSKKTQQ SPQDLSNEE+T ANHFEDSSKES+ESSDH LDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  318   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  377
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  378   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  437
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  438   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  497
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  498   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  557
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  558   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADM  617
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  618   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  677
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  678   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  737
             LQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  738   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  797
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  798   QQALDCLKNAKTDGERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNekekkecekll  857
             QQALDCLK+AKTD ERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E EKKECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  858   tpeakklleeakeslkaYKDCVSQakteaekkeceklltpeakklleeeakeSIKAYLDC  917
             TPEAKKLLEEAKESLKAYKDCVS+A+ E EKKECEKLLTPEAKKLLEEEAKES+K YLDC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  918   VSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  977
             VSQA+TEAEKKECEKLLTPEA+KKLEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEA+
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEAR  848

Query  978   KLLEQQA-------LDCLKNAKTDGERKKCLKDLPKDLQKKV-LAKESLKAYKDCVSRAR  1029
             KLLEQ+        LDC+  A+ + E++ C K L  + +KK+  AK S+K Y DCVS+AR
Sbjct  849   KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQAR  908

Query  1030  Nekekke-ceklltpeakklleeakeslkaYKDCLSQARNEEERRACeklltpeakklle  1088
              E EKKE    L     K L +E K S+KAY DC+S+ARNE E++ CEKLLTPEAKK+LE
Sbjct  909   TEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLE  968

Query  1089  eakeslkaYKDCVSRARNEKEKQECEKLLTPE-AKKLLEQQA----LDCLKNAKTEAEKK  1143
             +         DC+  A+ E EK+ C K L  +  KK+L +++    +DC+  A+   E+K
Sbjct  969   QQAL------DCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERK  1022

Query  1144  RCAKDLPKDLQKKVL--AKESVKAYLDCVSRARNEKDKKECeklltpeakklleeakesl  1201
              C K L  +  KK+L  AKES+KAY DC+S+ARNE +++ C                   
Sbjct  1023  ACEKLLTPE-AKKLLEEAKESLKAYKDCLSQARNEEERRAC-------------------  1062

Query  1202  kaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK  1261
                                EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEK
Sbjct  1063  -------------------EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEK  1103

Query  1262  LLTPEARKFLAKQVLNCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARN  1321
             LLTPEARKFLAKQVL+CLEKARNEEE+KACLKN+PKDLQ NVLAKESLKAYKDCLSQARN
Sbjct  1104  LLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  1163

Query  1322  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAK  1381
             EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAK
Sbjct  1164  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1223

Query  1382  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1441
             ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1224  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1283

Query  1442  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1501
             KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLS
Sbjct  1284  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1343

Query  1502  DSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1561
             DSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1344  DSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1403

Query  1562  ADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEA  1621
             ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA
Sbjct  1404  ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA  1463

Query  1622  RVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVKQAF  1681
             +VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTE QDETSPVKQAF
Sbjct  1464  KVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAF  1523

Query  1682  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1741
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1524  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1583

Query  1742  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1801
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1584  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1643

Query  1802  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1861
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1644  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1703

Query  1862  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1921
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1704  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1763

Query  1922  PKGGN  1926
             PKGGN
Sbjct  1764  PKGGN  1768


 Score =  171 bits (634),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 179/199 (90%), Positives = 184/199 (93%), Gaps = 1/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANhfedfskeskessdh-LDNPTETKTNFDE  59
            MNEENDKLETSKKTQQHSPQDLSNEEATEANHFED SKESKESSDH LDN TETKTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  60   YESEETQTQMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEY  119
            YE EETQTQMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  120  DQENNGYQEETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHLDN  179
            DQENNGYQEETQ+DLIDDETSKKTQQ SPQDLSNEE+T ANHFEDSSKES+ESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  180  PTETKTNFDEYESEETQTQ  198
            PTETKTNFDEY SEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

23) C694_02720 in NC_018939


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1757 bits (6674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1630/1800 (91%), Positives = 1685/1800 (94%), Gaps = 51/1800 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN TET+TNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  258
             QMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENN YQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  318
             EETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDNPTET+TNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             D  KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLLTPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             QQALDCLK+AKTD ERKKCL    KDL K +                             
Sbjct  669   QQALDCLKSAKTDEERKKCL----KDLPKDL-----------------------------  695

Query  859   tPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDC  918
                 +K+L  AK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEE    S+KAY DC
Sbjct  696   ---QKKVL--AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-SLKAYKDC  749

Query  919   VSQakneaekkeceklltleskkk-leeakksvkaYLDCVSQakteaekkeceklltPEA  977
             VS+A+NE EKKECEKLLT E+KK   EEAK SVK YLDCVSQA+TEAEKKECEKLLTPEA
Sbjct  750   VSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEA  809

Query  978   KKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKVL---AKESLKAYKDCVSK  1028
             +K LE+        LDC+ +A+TEA+KK C K L  +  +K+L    K S+KAY DCVS+
Sbjct  810   RKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSR  868

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEARKLL
Sbjct  869   ARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLL  928

Query  1089  E-EAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCV  1147
             E E K SVKAY DCVS+ARNEKEKKECEKLLTPEAKK+LEQQ LDCLKNAKTE++KKRCV
Sbjct  929   EQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCV  988

Query  1148  KDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  1207
             KDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  989   KDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKD  1048

Query  1208  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPE  1267
             CLSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVSRARNEKEKKECEKLLTPE
Sbjct  1049  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPE  1108

Query  1268  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERR  1327
             ARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERR
Sbjct  1109  ARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1168

Query  1328  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQK  1387
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK
Sbjct  1169  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1228

Query  1388  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQ  1447
             DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQ
Sbjct  1229  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1288

Query  1448  NLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1507
             NLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+A
Sbjct  1289  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKA  1348

Query  1508  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1567
             LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1349  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1408

Query  1568  SDNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaenn  1627
             SDNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+N
Sbjct  1409  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1468

Query  1628  kIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1687
             KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSD
Sbjct  1469  KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSD  1528

Query  1688  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1747
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1529  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1588

Query  1748  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1807
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1589  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1648

Query  1808  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1867
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1649  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1708

Query  1868  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1709  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  139 bits (512),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 178/199 (90%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDH LDN TET+T+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               EETQTQMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETQTNFDGDKSEETQTQ  199
            PTET+TNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

24) HP0527 in NC_000915


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1757 bits (6674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1630/1800 (91%), Positives = 1685/1800 (94%), Gaps = 51/1800 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN TET+TNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  258
             QMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENN YQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  318
             EETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDNPTET+TNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             D  KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLLTPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             QQALDCLK+AKTD ERKKCL    KDL K +                             
Sbjct  669   QQALDCLKSAKTDEERKKCL----KDLPKDL-----------------------------  695

Query  859   tPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDC  918
                 +K+L  AK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEE    S+KAY DC
Sbjct  696   ---QKKVL--AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-SLKAYKDC  749

Query  919   VSQakneaekkeceklltleskkk-leeakksvkaYLDCVSQakteaekkeceklltPEA  977
             VS+A+NE EKKECEKLLT E+KK   EEAK SVK YLDCVSQA+TEAEKKECEKLLTPEA
Sbjct  750   VSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEA  809

Query  978   KKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKVL---AKESLKAYKDCVSK  1028
             +K LE+        LDC+ +A+TEA+KK C K L  +  +K+L    K S+KAY DCVS+
Sbjct  810   RKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSR  868

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEARKLL
Sbjct  869   ARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLL  928

Query  1089  E-EAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCV  1147
             E E K SVKAY DCVS+ARNEKEKKECEKLLTPEAKK+LEQQ LDCLKNAKTE++KKRCV
Sbjct  929   EQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCV  988

Query  1148  KDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  1207
             KDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  989   KDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKD  1048

Query  1208  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPE  1267
             CLSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVSRARNEKEKKECEKLLTPE
Sbjct  1049  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPE  1108

Query  1268  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERR  1327
             ARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERR
Sbjct  1109  ARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1168

Query  1328  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQK  1387
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK
Sbjct  1169  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1228

Query  1388  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQ  1447
             DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQ
Sbjct  1229  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1288

Query  1448  NLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1507
             NLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+A
Sbjct  1289  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKA  1348

Query  1508  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1567
             LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1349  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1408

Query  1568  SDNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaenn  1627
             SDNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+N
Sbjct  1409  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1468

Query  1628  kIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1687
             KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSD
Sbjct  1469  KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSD  1528

Query  1688  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1747
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1529  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1588

Query  1748  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1807
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1589  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1648

Query  1808  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1867
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1649  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1708

Query  1868  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1709  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  139 bits (512),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 178/199 (90%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDH LDN TET+T+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               EETQTQMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETQTNFDGDKSEETQTQ  199
            PTET+TNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

25) C695_02720 in NC_018937


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1757 bits (6674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1630/1800 (91%), Positives = 1685/1800 (94%), Gaps = 51/1800 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN TET+TNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  258
             QMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENN YQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  318
             EETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDNPTET+TNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             D  KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLLTPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             QQALDCLK+AKTD ERKKCL    KDL K +                             
Sbjct  669   QQALDCLKSAKTDEERKKCL----KDLPKDL-----------------------------  695

Query  859   tPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDC  918
                 +K+L  AK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEE    S+KAY DC
Sbjct  696   ---QKKVL--AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-SLKAYKDC  749

Query  919   VSQakneaekkeceklltleskkk-leeakksvkaYLDCVSQakteaekkeceklltPEA  977
             VS+A+NE EKKECEKLLT E+KK   EEAK SVK YLDCVSQA+TEAEKKECEKLLTPEA
Sbjct  750   VSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEA  809

Query  978   KKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKVL---AKESLKAYKDCVSK  1028
             +K LE+        LDC+ +A+TEA+KK C K L  +  +K+L    K S+KAY DCVS+
Sbjct  810   RKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSR  868

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEARKLL
Sbjct  869   ARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLL  928

Query  1089  E-EAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCV  1147
             E E K SVKAY DCVS+ARNEKEKKECEKLLTPEAKK+LEQQ LDCLKNAKTE++KKRCV
Sbjct  929   EQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCV  988

Query  1148  KDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  1207
             KDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  989   KDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKD  1048

Query  1208  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPE  1267
             CLSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVSRARNEKEKKECEKLLTPE
Sbjct  1049  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPE  1108

Query  1268  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERR  1327
             ARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERR
Sbjct  1109  ARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1168

Query  1328  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQK  1387
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK
Sbjct  1169  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1228

Query  1388  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQ  1447
             DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQ
Sbjct  1229  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1288

Query  1448  NLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1507
             NLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+A
Sbjct  1289  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKA  1348

Query  1508  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1567
             LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1349  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1408

Query  1568  SDNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaenn  1627
             SDNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+N
Sbjct  1409  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1468

Query  1628  kIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1687
             KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSD
Sbjct  1469  KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSD  1528

Query  1688  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1747
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1529  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1588

Query  1748  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1807
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1589  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1648

Query  1808  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1867
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1649  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1708

Query  1868  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1709  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  139 bits (512),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 178/199 (90%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDH LDN TET+T+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               EETQTQMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETQTNFDGDKSEETQTQ  199
            PTET+TNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

26) C730_02720 in NC_018938


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1757 bits (6674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1630/1800 (91%), Positives = 1685/1800 (94%), Gaps = 51/1800 (2%)

Query  139   ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT  198
             ETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN TET+TNFD    EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  258
             QMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENN YQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  318
             EETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDNPTET+TNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             D  KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKESLKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  739   kteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLLTPEAKKLLE  798
             KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEAKKLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  799   QQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  858
             QQALDCLK+AKTD ERKKCL    KDL K +                             
Sbjct  669   QQALDCLKSAKTDEERKKCL----KDLPKDL-----------------------------  695

Query  859   tPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDC  918
                 +K+L  AK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEE    S+KAY DC
Sbjct  696   ---QKKVL--AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE-SLKAYKDC  749

Query  919   VSQakneaekkeceklltleskkk-leeakksvkaYLDCVSQakteaekkeceklltPEA  977
             VS+A+NE EKKECEKLLT E+KK   EEAK SVK YLDCVSQA+TEAEKKECEKLLTPEA
Sbjct  750   VSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEA  809

Query  978   KKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKVL---AKESLKAYKDCVSK  1028
             +K LE+        LDC+ +A+TEA+KK C K L  +  +K+L    K S+KAY DCVS+
Sbjct  810   RKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLEQEVKKSVKAYLDCVSR  868

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEK+ECEKLLTPEA+K LEEAKKSVK YLDCVSQA+TEAEKKECEKLLTPEARKLL
Sbjct  869   ARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLL  928

Query  1089  E-EAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCV  1147
             E E K SVKAY DCVS+ARNEKEKKECEKLLTPEAKK+LEQQ LDCLKNAKTE++KKRCV
Sbjct  929   EQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCV  988

Query  1148  KDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  1207
             KDLPKDLQKKVLAKESVKAY+DCVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  989   KDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKD  1048

Query  1208  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPE  1267
             CLSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVSRARNEKEKKECEKLLTPE
Sbjct  1049  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPE  1108

Query  1268  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERR  1327
             ARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERR
Sbjct  1109  ARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1168

Query  1328  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQK  1387
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK
Sbjct  1169  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1228

Query  1388  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQ  1447
             DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQ
Sbjct  1229  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1288

Query  1448  NLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1507
             NLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+A
Sbjct  1289  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKA  1348

Query  1508  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1567
             LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1349  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1408

Query  1568  SDNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaenn  1627
             SDNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+N
Sbjct  1409  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1468

Query  1628  kIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1687
             KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSD
Sbjct  1469  KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSD  1528

Query  1688  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1747
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1529  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1588

Query  1748  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1807
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1589  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1648

Query  1808  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1867
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1649  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1708

Query  1868  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1709  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  139 bits (512),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 178/199 (90%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDH LDN TET+T+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               EETQTQMDS GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDH LDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETQTNFDGDKSEETQTQ  199
            PTET+TNFD  KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

27) cagY in NC_014256


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1753 bits (6657),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1563/1762 (89%), Positives = 1607/1762 (92%), Gaps = 81/1762 (4%)

Query  139   ETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDNPTETKTNFDEDKSEETQT  198
             ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD YLDN TETKTNFDE   EETQT
Sbjct  9     ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDEYELEETQT  68

Query  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelneeddqennGYQ  258
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  69    QMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEDDQENNGYQ  128

Query  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDNPTETKTNF  318
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD YLDNPTETKTNF
Sbjct  129   EETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNPTETKTNF  188

Query  319   DEDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  378
             DE KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  189   DEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  248

Query  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308

Query  439   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  498
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  309   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKCLDLIKDEN  368

Query  499   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfrkelelqkelqeYKDCI  558
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL +QKELQEYKDCI
Sbjct  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCI  428

Query  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  619   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  678
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  679   LQSDILAKESVKAYKDCVSQakneaekkeceklltpeakklleeeakeSVKAYLDCVSQa  738
             LQSDILAKES+KAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ 
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ-  607

Query  739   kteaekkeceklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEARKKL  798
                   K     L     K   EEAK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+K L
Sbjct  608   AKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  667

Query  799   EE-------------------------------AKKSVKAYKDCVSQAKNEDEKKECEKL  827
             E+                               AK SVKAY DCVSQAK E EKKECEKL
Sbjct  668   EQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL  727

Query  828   LTPEARKLLEQ--QAL----DCLKNAKTDEERKKCLKDLPKDLQKKVL---AKESVKAYL  878
             LTPEA+KLLE+  ++L    DC+  A+ + E+K C K L  +  KK+L   AKESVK YL
Sbjct  728   LTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPE-AKKLLEEEAKESVKVYL  786

Query  879   DCVSQakneaekkecekLLTPEARKLLEEAKESIKAYKDCVSKARNekekkeceklltpe  938
             DCVSQA+ EAEKKECEKLLTPEARK LEEAK S+K Y DCVS+AR E EKKECEKLLTPE
Sbjct  787   DCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE  846

Query  939   akklleeeakeSVKAYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSR  998
             A+KLLE+E K SVKAYLDCVS+A+ E EK+ECEKLLTPEA+K LEEAK S+K Y DCVS+
Sbjct  847   ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQ  906

Query  999   ARNekekkecekLLTPEAKKL---------------------------------------  1019
             AR E EKKECEKLLTPEA+KL                                       
Sbjct  907   ARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKF  966

Query  1020  LEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNekekkecek  1079
             LEQQALDCLKNAKTE++KKRCVKDLPKDLQKKVLAKESVKAY DCVSRARN KE+K CEK
Sbjct  967   LEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEK  1026

Query  1080  lltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYL  1139
             LLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYL
Sbjct  1027  LLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYL  1086

Query  1140  DCVSQakteaekkeceklltPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVL  1199
             DCVS+A+ E EKKECEKLLTPEARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQENVL
Sbjct  1087  DCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVL  1146

Query  1200  AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekek  1259
             AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK
Sbjct  1147  AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK  1206

Query  1260  kecekLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEA  1319
             KECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEA
Sbjct  1207  KECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEA  1266

Query  1320  REKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNL  1379
             REKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNL
Sbjct  1267  REKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNL  1326

Query  1380  DDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPM  1439
             DDPTDQQAIEQCLEGLSDSE+ALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPM
Sbjct  1327  DDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPM  1386

Query  1440  DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalgg  1499
             DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGG
Sbjct  1387  DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGG  1446

Query  1500  nkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDD  1559
             NKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDD
Sbjct  1447  NKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDD  1506

Query  1560  KKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM  1619
             KKK+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM
Sbjct  1507  KKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM  1566

Query  1620  NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG  1679
             NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG
Sbjct  1567  NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG  1626

Query  1680  VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN  1739
             VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN
Sbjct  1627  VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN  1686

Query  1740  GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII  1799
             GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII
Sbjct  1687  GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII  1746

Query  1800  KQSTKTLSREHEEITTSPKGGN  1821
             KQSTKTLSREHEEITTSPKGGN
Sbjct  1747  KQSTKTLSREHEEITTSPKGGN  1768


 Score =  174 bits (644),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 178/199 (90%), Positives = 182/199 (92%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKIQQHSPQDLSNEEATEANHFedsskeskessdHHLNNPTETKTNFDG  60
            MNEENDKLETSKK QQHSPQDLSNEEATEANHFEDSSKESKESSDH L+N TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelneed  120
               EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEE QE NEED
Sbjct  61   YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121  dqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD YLDN
Sbjct  121  DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181  PTETKTNFDEDKSEETQTQ  199
            PTETKTNFDE KSEE   +
Sbjct  181  PTETKTNFDEYKSEEITND  199

28) HMPREF4655_21077 in NC_017360


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1564 bits (5937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1523/1823 (84%), Positives = 1619/1823 (89%), Gaps = 81/1823 (4%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskerseHHLDNPTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKE S+H LDN TETKTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
             YE EETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDN  180
             DQENNGYQEETQ+DLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+H LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   PTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPL  240
             PTETKTNFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  301   EIEDKNPLRDFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKC  360
             EIEDKNPLR FYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKE  420
             LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDL  480
             LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  481   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  541   CLKDLPKDLQSDILAKESLKAYKDCVSRARNekekkeceklltpeakklleeeakeSVKA  600
             CLKDLPKDLQSDILAKESLKAYKDCVS+A+NE EKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  601   YLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekllt  660
             YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  661   PEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteae  720
             PEAKKLLE+QALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  721   kkeceklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeeake  780
             KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  781   SVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkece  840
             SVK YLDCVSQA+TEAEKKECEKLLTPEA+KKLEEAKKSVK YLDCVSQA+TEAEKKECE
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  841   klltPEAKKLLERQA-------LDCLKNAKTDEERKRCVKDLPKDLQKKV-LAKKSVKAY  892
             KLLTPEA+KLLE++        LDC+  A+ + E++ C K L  + +KK+  AKKSVK Y
Sbjct  841   KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVY  900

Query  893   KDCVSRARNekekke-ceklltpeakklleeakeslkaYKDCVSRARNekekkecekllt  951
              DCVS+AR E EKKE    L     K L +E K S+KAY DCVSRARNEKEKKECEKLLT
Sbjct  901   LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT  960

Query  952   peakklleeakeslkaYKDCVSRARNEKEKKECEQLLTPE-AKKLLEQQA----LDCLKN  1006
             PEAKK+LE+         DC+  A+ E EKK C + L  +  KK+L +++    +DC+  
Sbjct  961   PEAKKFLEQQAL------DCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSR  1014

Query  1007  AKTEAEKKRCVKDLPKDLQKKVL--AKESVKAYLDCVSRARNEKEKKECEQLLTPeakk-  1063
             A+   E+K C K L  +  KK+L  AKES+KAY DC+S+ARNE E++ CE+LLTPEA+K 
Sbjct  1015  ARNKKERKACEKLLTPE-AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL  1073

Query  1064  lleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARN  1123
             L +E K S+KAY DC+S+ARNE E++ CEKLLTPEA+K+L ++V       L C+ KARN
Sbjct  1074  LEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQV-------LSCLEKARN  1126

Query  1124  EKEKQECEKLLTPEAR-KFLAKQVL----SCLEKARNEEERKACLKNIPKD----LQKNV  1174
             E EK+ C K L  + + + LAK+ L     CL +ARNEEER+AC K +  +    L+++V
Sbjct  1127  EEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEV  1186

Query  1175  LAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKE  1234
               K S+KAY DC+S+ARNE E++ CEKLLTPEARK+L +E+++  KA  DC+  A     
Sbjct  1187  --KKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA-----  1239

Query  1235  KQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQE  1294
                      P+ R            AI  CL     +++   +K L+   +   L  L  
Sbjct  1240  --------DPNDR-----------AAIMKCLDGLSDEEK---LKYLQEAREKAVLDCL--  1275

Query  1295  AREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRIQSKQNQLSKTERLHQASECLDN  1354
                       KTARTDEEKRKCQNLYSDLIQEIQNKR QSKQNQLSKTERLHQASECLDN
Sbjct  1276  ----------KTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDN  1325

Query  1355  LDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLP  1414
             LDDPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLP
Sbjct  1326  LDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLP  1385

Query  1415  MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalg  1474
             MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALG
Sbjct  1386  MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALG  1445

Query  1475  gnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPID  1534
             GNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPID
Sbjct  1446  GNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPID  1505

Query  1535  DKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN  1594
             DKKKTE QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN
Sbjct  1506  DKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN  1565

Query  1595  MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA  1654
             MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA
Sbjct  1566  MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA  1625

Query  1655  GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI  1714
             GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI
Sbjct  1626  GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI  1685

Query  1715  NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI  1774
             NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI
Sbjct  1686  NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI  1745

Query  1775  IKQSTKTLSREHEEITTSPKGGN  1797
             IKQSTKTLSREHEEITTSPKGGN
Sbjct  1746  IKQSTKTLSREHEEITTSPKGGN  1768

29) HPSJM_02650 in NC_014560


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1385 bits (5258),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1117/1458 (77%), Positives = 1212/1458 (84%), Gaps = 135/1458 (9%)

Query  493   NECLKNIPQD-LQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKK--LEQQ--  547
             +ECLK I +  LQ ++    ++ AYKDC+  A+ E E+  C  L+  E  KK  L+QQ  
Sbjct  322   EECLKLIKDKKLQDQM--KKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKV  379

Query  548   --VLDCLKNAKTDEERKKCLK-----DLPKDLQSDILAKESLKAYKDCTSQAKTEDEKKE  600
                LDCLKNAKTDEER+ CLK     ++   ++ ++  +  L+ YKDC  +AKTE EK+E
Sbjct  380   QVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNE  439

Query  601   CeklltpeakklleeeakeSVKAYLDCVSQAKTEDEKKECeklltpeakkkleeakksvk  660
             C K L+ EA   L ++A       LDC+ +AKT++E++EC K +  + +K L        
Sbjct  440   CLKGLSKEAIERLKQQA-------LDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKA  492

Query  661   aYLDCVSQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDLQK  720
              Y DCVS+A+ E EKKECEKLLTPEAKK LEQQ LDCLKNAKTDEERK CLKDLPKDLQ 
Sbjct  493   -YKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQS  551

Query  721   KVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE-AKESVKAYLDCVSRARNe  779
              +LAKES++ Y DCVS+AKNEAE+KECEKLLTPEA+KLLEE AKESVKAYLDCVS+A+ E
Sbjct  552   DILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTE  611

Query  780   kekkecekLLTPEARKLLEESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE--  837
              EKKECEKLLTPEA+K LEE+KKSVKAYLDCVSQAK EAE+KECEKLLTPEA+KLLE+  
Sbjct  612   AEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQA  671

Query  838   -----------------------------AKESVKAYKDCVSRARNekekkecekLLTPE  868
                                          AKESVKAY DCVS+A+ E EKKECEKLLTPE
Sbjct  672   LDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPE  731

Query  869   ARKLLEESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE-AKKSVKAYLDCVSR  927
             A+KLLEE+K S+KAY DCVS+A+NE E+KECEKLLTPEA+KLLEE AK SVK YLDCVS+
Sbjct  732   AKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQ  791

Query  928   ARNekekkecekLLTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKV  981
             AR E EKKECEKLLTPEARK LE+        LDC+ +A+TEAEKK C K L  +  +K+
Sbjct  792   ARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKL  850

Query  982   L---AKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNE  1038
             L    K SV+ YLDCVS+A+NE E++ECEKLLTPEARK LEEAK SVK Y DCVS+AR E
Sbjct  851   LEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTE  910

Query  1039  KEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPKARKLLENQ  1098
              EK+ECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTP A+K+LE+Q
Sbjct  911   AEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQ  970

Query  1099  ALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKKSVKAYLDCVSRARNEKEKQECEKLLTP  1158
             ALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAK SVKAY+DCVSRARN KE++ CEKLLTP
Sbjct  971   ALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTP  1030

Query  1159  EARKLLEEAK---------------------------------------KSVKAYLDCVS  1179
             EA+KLLEEAK                                       KSVKAYLDCVS
Sbjct  1031  EAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS  1090

Query  1180  RARNEKEKQECEKLLTPEARKLLEE-------------------------------AKES  1208
             RARNEKEK+ECEKLLTPEARK+L                                 AKES
Sbjct  1091  RARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKES  1150

Query  1209  LKAYKDCLSQARNETERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECE  1268
             LKAYKDCLSQARNE ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECE
Sbjct  1151  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECE  1210

Query  1269  KLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1328
             KLLTPEARKFL K+ QQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA
Sbjct  1211  KLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1270

Query  1329  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPT  1388
             VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKR+Q+KQNQLSKTERLHQASECLDNLDDPT
Sbjct  1271  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPT  1330

Query  1389  DQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKN  1448
             DQ+AIEQCLEGLSDSE+ALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKN
Sbjct  1331  DQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1390

Query  1449  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalggdkkd  1508
             GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKD
Sbjct  1391  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKD  1450

Query  1509  ddkekskkPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddkkke  1568
             DDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK 
Sbjct  1451  DDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKT  1510

Query  1569  ekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1628
             EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM
Sbjct  1511  EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1570

Query  1629  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1688
             ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY
Sbjct  1571  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1630

Query  1689  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1748
             VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ
Sbjct  1631  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1690

Query  1749  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1808
             SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST
Sbjct  1691  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1750

Query  1809  KTLSREHEEITTSPKGGN  1826
             KTLSREHEEITTSPKGGN
Sbjct  1751  KTLSREHEEITTSPKGGN  1768


 Score = 1281 bits (4861),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1098/1375 (80%), Positives = 1186/1375 (87%), Gaps = 86/1375 (6%)

Query  1     MNEENDKLETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSD--NHLDNSTETQTHFDE  58
             MNEENDKLETSKK+QQHSPQDLSNEEATEANHFED  KE      + LDN TET+T+FDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  59    DKLEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneed  118
               LEETQTQMDS GNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119   dqenneyqeetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDNHLDNPT  178
             DQENN YQEETQ +LIDDETSKK+QQHSPQDLSNEEATE NHFE                
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFE----------------  164

Query  179   ESSDNHLDNSTESSDNHLDNPTETKTQETKTHFDEDKLEEITDDSNDQEiikgskkkyii  238
                 +   +S ESSD+ LDNPTETKT     +FDE K EEIT+DSNDQEIIKGSKKKYII
Sbjct  165   ----DSSKESKESSDHYLDNPTETKT-----NFDEYKSEEITNDSNDQEIIKGSKKKYII  215

Query  239   ggivvavliviilFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEK  298
             GGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEK
Sbjct  216   GGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEK  275

Query  299   GNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECIGNGGNYEECLKLIKDKKLQE  358
             GNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECI+NGGNYEECLKLIKDKKLQ+
Sbjct  276   GNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQD  335

Query  359   QMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER  418
             QMKKTLEAY+DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER
Sbjct  336   QMKKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER  395

Query  419   KECLKLINDPEIrekfrkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQ  478
             +ECLKLINDPEIREKFRKEL +QKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQ
Sbjct  396   NECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQ  455

Query  479   ALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTP  538
             ALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTP
Sbjct  456   ALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTP  515

Query  539   EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCTSQAKTEDEK  598
             EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDC SQAK E EK
Sbjct  516   EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEK  575

Query  599   KECeklltpeakklleeeakeSVKAYLDCVSQAKTEDEKKECeklltpeakkkleeakks  658
             KECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTE EKKECEKLLTPEAKKKLEEAKKS
Sbjct  576   KECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS  635

Query  659   vkaYLDCVSQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDL  718
             VKAYLDCVSQAKTE EKKECEKLLTPEAKKLLEQQALDCLK+AKTDEERK CLKDLPKDL
Sbjct  636   VKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDL  695

Query  719   QKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYLDCVSRARN  778
             QKKVLAKESV+ YLDCVS+AK EAE+KECEKLLTPEA+KLLEEAKES+KAY DCVSRARN
Sbjct  696   QKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARN  755

Query  779   ekekkecekLLTPEARKL---------------------------------------LEE  799
             EKEKKECEKLLTPEA+KL                                       LEE
Sbjct  756   EKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEE  815

Query  800   SKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESVKAYKDCVSRARNekek  858
             +KKSVK YLDCVSQA+ EAE+KECEKLLTPEARKLLE E K SVKAY DCVSRARNEKEK
Sbjct  816   AKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK  875

Query  859   kecekLLTPEARKLLEESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKKS  917
             +ECEKLLTPEARK LEE+KKSVK YLDCVSQA+ EAE+KECEKLLTPEARKLLE E KKS
Sbjct  876   QECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKS  935

Query  918   VKAYLDCVSRARNekekkecekLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDL  977
             VKAYLDCVSRARNEKEKKECEKLLTPEA+K+LE+QALDCLKNAKTE+EKKRCVKDLPKDL
Sbjct  936   VKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDL  995

Query  978   QKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN  1037
             QKKVLAKESV+ Y+DCVS+A+N  ERK CEKLLTPEA+KLLEEAKES+KAYKDC+S+ARN
Sbjct  996   QKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARN  1055

Query  1038  EKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPKARKLLEN  1097
             E E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTP ARK+L +
Sbjct  1056  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1115

Query  1098  QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKKSVKAYLDCVSRARNEKEKQECEKLLT  1157
             Q L CL +A+ E EKK C+K+LPKDLQ +VLAK S+KAY DC+S+ARNE E++ CEKLLT
Sbjct  1116  QVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLT  1175

Query  1158  PEARKLLE-EAKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLE-EAKESLKAYKDC  1215
             PEARKLLE E KKSVKAYLDCVSRARNEKEK+ECEKLLTPEARK+L  E ++  KA KDC
Sbjct  1176  PEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDC  1235

Query  1216  L--SQARNETERRACEKLLTPEAR-KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT  1272
             L  +++ + +    C   L+ E + K L++   K+V   LDC+  AR + EK+ C++L +
Sbjct  1236  LKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV---LDCLKTARTDEEKRKCQNLYS  1292

Query  1273  PEARKFLEKQRQQKDKAI---------KDCLKN-ADPNDRAAIMKCLDGLSDEEK  1317
                + + +K+ Q K++ +          +CL N  DP D+ AI +CL+GLSD EK
Sbjct  1293  DLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEK  1347

30) K747_11675 in NC_021215


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1355 bits (5141),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1162/1298 (90%), Positives = 1206/1298 (93%), Gaps = 49/1298 (3%)

Query  7     CLKNIPKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKN  66
             CLKNIP+DLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKN
Sbjct  472   CLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKN  531

Query  67    AKTDEERKKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklle  126
             AKTDEERKKCLKDLPKDLQSDILAK SLKAYKDCVS+A+NE EK+ECEKLLTPEAKKLLE
Sbjct  532   AKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLE  591

Query  127   eeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteae  186
             EEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAE
Sbjct  592   EEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAE  651

Query  187   kkeceklltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDC  246
             KKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKES+KAY DC
Sbjct  652   KKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDC  711

Query  247   VSRARNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEA  306
             VS+A+ E EK+ECEKLLTPEAKKLLEE    S+KAY DCVS+A+ E EKKECEKLLTPEA
Sbjct  712   VSQAKTEAEKKECEKLLTPEAKKLLEEAKE-SLKAYKDCVSRARNEKEKKECEKLLTPEA  770

Query  307   KKLLEQQA-------LDCLKSAKTDEERKKCLKDLPKDLQKKVL-AKESLKAYKDCVSRA  358
             KKLLE++A       LDC+  A+T+ E+K C K L  + +KK+  AK S+K Y DCVS+A
Sbjct  771   KKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  830

Query  359   RNEKEKQECeklltpeakklleeakkslkay-kDCVSRARNEKEKQECeklltpeakkll  417
             R E EK+ECEKLLTPEA+KLLE+  K       DCVSRARNEKEKQECEKLLTPEA+K L
Sbjct  831   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKL  890

Query  418   eeakkslkaykDCVSRARNEKEKQECEKLLTPEAKNLLEQ--------------------  457
             EEAKKS+K Y DCVS+AR E EK+ECEKLLTPEA++LLEQ                    
Sbjct  891   EEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK  950

Query  458   -------------------QALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLD  498
                                QALDCLK+AKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+D
Sbjct  951   EKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVD  1010

Query  499   CVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEA  558
             CVSRARN KE+K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA
Sbjct  1011  CVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA  1070

Query  559   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLSCLEKARNEEER  618
             RKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKQVLSCLEKARNEEE+
Sbjct  1071  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEK  1130

Query  619   KACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV  678
             KACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV
Sbjct  1131  KACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV  1190

Query  679   KAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKC  738
             KAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKC
Sbjct  1191  KAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKC  1250

Query  739   LDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQL  798
             LDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQL
Sbjct  1251  LDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQL  1310

Query  799   SKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNR  858
             SKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVDLIYSDLRNR
Sbjct  1311  SKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNR  1370

Query  859   KTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKT  918
             KTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKT
Sbjct  1371  KTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKT  1430

Query  919   IkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKK  978
             IKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKK
Sbjct  1431  IKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKK  1490

Query  979   EKSGEFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDAT  1038
             EKSGEFVDENGNPIDDKKK+E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDAT
Sbjct  1491  EKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDAT  1550

Query  1039  LTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVI  1098
             LTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVI
Sbjct  1551  LTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVI  1610

Query  1099  IPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGR  1158
             IPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGR
Sbjct  1611  IPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGR  1670

Query  1159  SERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSG  1218
             SERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSG
Sbjct  1671  SERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSG  1730

Query  1219  VYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1256
             VYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1731  VYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  407 bits (1533),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 513/844 (61%), Positives = 613/844 (73%), Gaps = 80/844 (9%)

Query  7     CLKNI-PKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKK--LEQQ----  59
             CLK I  K LQ ++    ++ AYKDC+ +A+ E E+  C  L+  E  KK  L+QQ    
Sbjct  324   CLKLIKDKKLQDQM--KKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQV  381

Query  60    VLDCLKNAKTDEERKKCLK-----DLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECe  114
              LDCLKNAKTDEER+ CLK     ++   ++ ++  +K L+ YKDC+  A+ E EK+EC 
Sbjct  382   ALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECL  441

Query  115   klltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaY  174
             K L+ EA   L ++A       LDC+ +     E ++      P+  +K   A  SVKAY
Sbjct  442   KGLSKEAIERLKQQA-------LDCLKN-AKTDEERNECLKNIPQDLQKELLADMSVKAY  493

Query  175   LDCVSQakteaekkeceklltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKV  234
              DCVS+A+ E EKKECEKLLTPEAKK LEQQ LDCLK+AKTDEERKKCLKDLPKDLQ  +
Sbjct  494   KDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDI  553

Query  235   LAKESLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQakteae  294
             LAKESLKAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAE
Sbjct  554   LAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAE  613

Query  295   kkeceklltPEAKKLLEQQA------LDCLKSAKTDEER---------------------  327
             KKECEKLLTPEAKK LE+        LDC+  AKT+ E+                     
Sbjct  614   KKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALD  673

Query  328   -----------KKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECeklltpeak  376
                        KKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E EK+ECEKLLTPEAK
Sbjct  674   CLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAK  733

Query  377   klleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslkay-kDCVSRAR  435
             KLLEEAK SLKAYKDCVSRARNEKEK+ECEKLLTPEAKKLLEE  K       DCVS+AR
Sbjct  734   KLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQAR  793

Query  436   NEKEKQECEKLLTPEAKNLLEQQA------LDCLKSAKTEAEKKRCVKDLPKDLQKKVLA  489
              E EK+ECEKLLTPEA++ LE+        LDC+  A+TEAEKK C K L  +  +K+L 
Sbjct  794   TEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-ARKLLE  852

Query  490   KE---SVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEE  546
             +E   SVKAYLDCVSRARNEKEK+ECEKLLTPEA+K LEEAK S+K Y DC+SQAR E E
Sbjct  853   QEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAE  912

Query  547   RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVL  606
             ++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEA+KFL +Q L
Sbjct  913   KKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQAL  972

Query  607   SCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEA  666
              CL +A+ E E+K C+K++PKDLQK+VLAKES+KAY DC+S+ARN  ER+ACEKLLTPEA
Sbjct  973   DCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEA  1032

Query  667   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN  726
             +KLLE E K S+KAY DC+S+ARNE E++ CEKLLTPEARK+L +E+++  KA  DC+  
Sbjct  1033  KKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1091

Query  727   ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKC-QNLYSDLIQE  785
             A  +        L  L+ E + K+L     K VL CL  AR +EEK+ C +NL  DL ++
Sbjct  1092  ARNEKEKKECEKL--LTPEAR-KFL----AKQVLSCLEKARNEEEKKACLKNLPKDLQEN  1144

Query  786   IQNK  789
             +  K
Sbjct  1145  VLAK  1148


 Score =  310 bits (1162),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 408/751 (55%), Positives = 518/751 (69%), Gaps = 88/751 (11%)

Query  62   DCLKNAKTDEERKKCLKDL-PKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpe  120
            +C+ N+   EE   CLK +  K LQ ++  KK+L AYKDC+  A+ E E+  C  L+  E
Sbjct  313  ECISNGGNYEE---CLKLIKDKKLQDQM--KKTLEAYKDCIKNAKTEEERIKCLDLIKDE  367

Query  121  akklleeeakeSVKAYLDCVSQakteaekke----ceklltpeakkkleeakksvkaYLD  176
              K    + +  V+  LDC+ +AKT+ E++E     +     E  +K    +K ++ Y D
Sbjct  368  NLKKSLLNQQ-KVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKD  426

Query  177  CVSQakteaekkeceklltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLA  236
            C+ +AKTEAEK+EC K L+ EA   L QQALDCLK+AKTDEER+ CLK++P+DLQK +LA
Sbjct  427  CIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLA  486

Query  237  KESLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekk  296
              S+KAYKDCVSRARNEKEK+ECEKLLTPEAKK LE++        LDC+ +AKT+ E+K
Sbjct  487  DMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQV-------LDCLKNAKTDEERK  539

Query  297  eceklltPE-AKKLLEQQAL----DCLKSAKTDEERKKCLKDLPKDLQKKVL---AKESL  348
             C K L  +    +L +++L    DC+  AK + E+K C K L  +  KK+L   AKES+
Sbjct  540  KCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPE-AKKLLEEEAKESV  598

Query  349  KAYKDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECekl  408
            KAY DCVS+A+ E EK+ECEKLLTPEAKK LEEAKKS+KAY DCVS+A+ E EK+EC   
Sbjct  599  KAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKEC---  655

Query  409  ltpeakklleeakkslkaykDCVSRARNEKEKQECEKLLTPEAKNLLEQQALDCLKSAKT  468
                                               EKLLTPEAK+LLEQQALDCLKSAKT
Sbjct  656  -----------------------------------EKLLTPEAKKLLEQQALDCLKSAKT  680

Query  469  EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeak  528
            + E+K+C+KDLPKDLQKKVLAKESVKAYLDCVS+A+ E EKKECEKLLTPEAKKLLEEAK
Sbjct  681  DEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAK  740

Query  529  eslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQE  588
            ESLKAYKDC+S+ARNE E++ CEKLLTPEA+KLLE+E K SVK YLDCVS+AR E EK+E
Sbjct  741  ESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKE  800

Query  589  CEKLLTPEARKFL------AKQVLSCLEKARNEEERKACLKNIPKD----LQKNVLAKES  638
            CEKLLTPEARK L       K  L C+ +AR E E+K C K +  +    L+++V  K S
Sbjct  801  CEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEV--KKS  858

Query  639  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECE  698
            +KAY DC+S+ARNE E++ CEKLLTPEARK LE E KKSVK YLDCVS+AR E EK+ECE
Sbjct  859  VKAYLDCVSRARNEKEKQECEKLLTPEARKKLE-EAKKSVKVYLDCVSQARTEAEKKECE  917

Query  699  KLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  758
            KLLTPEARK+L +E+++  KA  DC+  A  +        L  L+ E K K+L++     
Sbjct  918  KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKL--LTPEAK-KFLEQ----Q  970

Query  759  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNK  789
             LDCLK A+T+ EK++C +   DL +++Q+K
Sbjct  971  ALDCLKNAKTETEKKRCVK---DLPKDLQKK  998


 Score =  132 bits (484),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 134/330 (41%), Positives = 195/330 (60%), Gaps = 55/330 (16%)

Query  536  DCLSQARNEEERRACEKLLT-PEARKLLEQE--VKKSVKAYLDCVSRARNEKEKQECEKL  592
            DCL +A+ +EER  C KL+  PE R  + +E  ++K ++ Y DC+  A+ E EK+EC K 
Sbjct  384  DCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKG  443

Query  593  LTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNE  652
            L+ EA   L +Q L CL +A+ +EER+ CLKNIP+DLQK++LA  S+KAYKDC+S+ARNE
Sbjct  444  LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNE  503

Query  653  EERRACEKLLTPEARKLLEQEV------------------------------KKSVKAYL  682
             E++ CEKLLTPEA+K LEQ+V                              K S+KAY 
Sbjct  504  KEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYK  563

Query  683  DCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGL  742
            DCVS+A+NE EK+ECEKLLTPEA+K+L  E ++  KA  DC+ +A  +  A    C   L
Sbjct  564  DCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTE--AEKKECEKLL  621

Query  743  SDEEKLKYLQEARE-KAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKT  801
            + E K K  +  +  KA LDC+  A+T+ EK+ C++L +      + K+  +        
Sbjct  622  TPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTP-----EAKKLLE--------  668

Query  802  ERLHQASECLDNLDDPTDQEAIEQCLEGLS  831
               +QA +CL +   +  +E   +CL +L+
Sbjct  669  ---QQALDCLKS---AKTDEERKKCLKDLP  692


 Score = 76.3 bits (270),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 65/112 (59%), Positives = 83/112 (75%), Gaps = 12/112 (10%)

Query  5     KKCLKNIPKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQ--QVL-  61
             K+C+K++PKDLQK +LA  SVKAY DCVS+ARN KE+K CEKLLTPEAKK LE+  + L 
Sbjct  985   KRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLK  1044

Query  62    ---DCLKNAKTDEERKKCLKDLPKD----LQSDILAKKSLKAYKDCVSRARN  106
                DCL +A+ +EER+ C K L  +    L+ ++  KKS+KAY DCVSRARN
Sbjct  1045  AYKDCLSQARNEEERRACEKLLTPEARKLLEQEV--KKSVKAYLDCVSRARN  1094


 Score = 70.0 bits (246),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 86/247 (35%), Positives = 134/247 (55%), Gaps = 40/247 (16%)

Query  620  ACLKNI-PKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEA--RKLLEQEVKK  676
             CLK I  K LQ ++  K +L AYKDC+ +A+ EEER  C  L+  E   + LL+Q+   
Sbjct  323  ECLKLIKDKKLQDQM--KKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQ---  377

Query  677  SVKAYLDCVSRARNEKEKQECEKLLT-PEARKFLAKELQ-QKD-KAIKDCLKNADPNDRA  733
             V+  LDC+  A+ + E++EC KL+  PE R  + KEL  QK+ +  KDC+KNA  +  A
Sbjct  378  KVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTE--A  435

Query  734  AIMKCLDGLSDE--EKLKYLQEAREKAVLDCLKTARTDEEKRKC-----QNLYSDLIQEI  786
                CL GLS E  E+LK       +  LDCLK A+TDEE+  C     Q+L  +L+ ++
Sbjct  436  EKNECLKGLSKEAIERLK-------QQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488

Query  787  QNK-------RTQNKQNQ------LSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDS  833
              K       R++N +++      L+   +     + LD L ++  +E   +CL +L+  
Sbjct  489  SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  834  ERALILG  840
             ++ IL+
Sbjct  549  LQSDILA  555


 Score = 54.5 bits (187),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 53/102 (52%), Positives = 64/102 (63%), Gaps = 30/102 (29%)

Query  5     KKCLKNIPKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCL  64
             K CLKN+PKDLQ ++LA  S+KAYKDC+S+ARNE E++ CEKLLTPEA+K LEQ+V    
Sbjct  1131  KACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEV----  1186

Query  65    KNAKTDEERKKCLKDLPKDLQSDILAKKSLKAYKDCVSRARN  106
                                       KKS+KAY DCVSRARN
Sbjct  1187  --------------------------KKSVKAYLDCVSRARN  1202

31) orf13/14 in NC_000921


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1330 bits (5046),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1031/1281 (81%), Positives = 1109/1281 (87%), Gaps = 113/1281 (8%)

Query  651   SVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKD  710
             SV+AY DCVS+A+NE E+KECEKLLTPEAKK LE+Q LDCLKNAKTDEERK CLKDLPKD
Sbjct  489   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548

Query  711   LQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE-AKKSVKAYKDCVLRA  769
             LQ  +LAKES++ Y DCVS+AKNEAE+KECEKLLTPEA+KLLEE AK SVKAY DCV +A
Sbjct  549   LQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  608

Query  770   RNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLE  829
             + E EK+ECEKLLTPEA+K LEE+KKSVKAYLDCVS+AK EAE+KECEKLLTPEA+KLLE
Sbjct  609   KTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  668

Query  830   E-------------------------------AKESVKAYKDCVSRARNEKEKQECEKLL  858
             +                               AKESVKAY DCVS+A+ E EK+ECEKLL
Sbjct  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  728

Query  859   TPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEE-AKESVKAYKDC  917
             TPEA+KLLEE+K S+KAY DCVS+A+NE E+KECEKLLTPEA+KLLEE AKESVK Y DC
Sbjct  729   TPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDC  788

Query  918   VSRARNEKEKQECEKLLTPEAKKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQ  971
             VS+AR E EK+ECEKLLTPEA+K LE+        LDC+ +A+TEAEKK C K L  +  
Sbjct  789   VSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPE-A  847

Query  972   KKVL---AKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRA  1028
             +K+L    K SV+ YLDCVS+A+NE E++ECEKLLTPEARK LEEAK SVK Y DCVS+A
Sbjct  848   RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLDCVSQA  907

Query  1029  RNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLL  1088
             R E EK+ECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEA+K+L
Sbjct  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFL  967

Query  1089  ENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCV---------------  1133
             E+QALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKESVKAY+DCV               
Sbjct  968   EQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKL  1027

Query  1134  -----------------------SRARNekekkecekLLTPEARKLLE-ESKKSVKAYLD  1169
                                    S+ARNE E++ CEKLLTPEARKLLE E KKSVKAYLD
Sbjct  1028  LTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLD  1087

Query  1170  CVSkakneaekkecekLLTPEARKLLEE-------------------------------A  1198
             CVS+A+NE EKKECEKLLTPEARK+L                                 A
Sbjct  1088  CVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLA  1147

Query  1199  KESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1258
             KES+KAYKDC+S+ARNE E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+
Sbjct  1148  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKK  1207

Query  1259  ECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1318
             ECEKLLTPEARKFL K+ QQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR
Sbjct  1208  ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAR  1267

Query  1319  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIqnkkaqnkqnqLSKTERLHQASECLDNLD  1378
             EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNK++Q+KQNQLSKTERLHQASECLDNLD
Sbjct  1268  EKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1327

Query  1379  DPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMD  1438
             DPTDQ+AIEQCLEGLSDSE+ALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMD
Sbjct  1328  DPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMD  1387

Query  1439  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalggd  1498
             FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+
Sbjct  1388  FKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGN  1447

Query  1499  kkdddkekgkkPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddk  1558
             KKDDDKEK+KK+TAE+K ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDK
Sbjct  1448  KKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDK  1507

Query  1559  kkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1618
             KK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN
Sbjct  1508  KKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMN  1567

Query  1619  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1678
             GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV
Sbjct  1568  GTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGV  1627

Query  1679  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1738
             DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING
Sbjct  1628  DGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAING  1687

Query  1739  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1798
             SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK
Sbjct  1688  SMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIK  1747

Query  1799  QSTKTLSREHEEITTSPKGGN  1819
             QSTKTLSREHEEITTSPKGGN
Sbjct  1748  QSTKTLSREHEEITTSPKGGN  1768


 Score = 1221 bits (4631),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1090/1367 (80%), Positives = 1187/1367 (87%), Gaps = 77/1367 (5%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDE  60
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFED  KES ESSD+ LDN TETKT+FDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  61    DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEETQKLneed  120
               LEETQTQMDSGGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  NEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  121   dqennehqeetqtdLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDN  180
             DQENN  QEETQ DLIDDETS KTQQ+SPQDLSNEEATEANHFED  KES ESSD+ LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  181   PTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQEiikgskkkyiiggivvavli  240
             PTE                TKT+FDE K+EEIT+DSNDQEIIKGSKKKYIIGGIVVAVLI
Sbjct  181   PTE----------------TKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLI  224

Query  241   viilFSRSIFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLF  300
             VIILFSRSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLF
Sbjct  225   VIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLF  284

Query  301   FNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAY  360
             FNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY
Sbjct  285   FNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY  344

Query  361   NDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLIND  420
             +DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLIND
Sbjct  345   KDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLIND  404

Query  421   PEIrekfrkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAK  480
             PEIREKFRKEL +QKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAK
Sbjct  405   PEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAK  464

Query  481   TDEERKECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQ  540
             TDEER+ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEK+ECEKLLTPEAKK LE+Q
Sbjct  465   TDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQ  524

Query  541   ALDCLKNAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQakteaekkeceklltp  600
              LDCLKNAKTDEERK CLK+LPKDLQSDILAKESLKAYKDC SQAK EAEKKECEKLLTP
Sbjct  525   VLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTP  584

Query  601   eakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakkSVRAYLDCVS  660
             EAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSV+AYLDCVS
Sbjct  585   EAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS  644

Query  661   KAKNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKES  720
             +AK EAE+KECEKLLTPEAKKLLE+QALDCLK+AKTDEERK CLKDLPKDLQKKVLAKES
Sbjct  645   QAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKES  704

Query  721   VRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARN---------  771
             V+ YLDCVS+AK EAE+KECEKLLTPEA+KLLEEAK S+KAYKDCV RARN         
Sbjct  705   VKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEK  764

Query  772   ------------------------------EKEKQECEKLLTPEARKLLEESKKSVKAYL  801
                                           E EK+ECEKLLTPEARK LEE+KKSVK YL
Sbjct  765   LLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYL  824

Query  802   DCVSKAKNEAERKECEKLLTPEARKLLE-EAKESVKAYKDCVSRARNEKEKQECEKLLTP  860
             DCVS+A+ EAE+KECEKLLTPEARKLLE E K SVKAY DCVSRARNEKEKQECEKLLTP
Sbjct  825   DCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTP  884

Query  861   EARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLE-EAKESVKAYKDCVS  919
             EARK LEE+KKSVK YLDCVS+A+ EAE+KECEKLLTPEARKLLE E K SVKAY DCVS
Sbjct  885   EARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVS  944

Query  920   RARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES  979
             RARNEKEK+ECEKLLTPEAKK+LE+QALDCLKNAKTE+EKKRCVKDLPKDLQKKVLAKES
Sbjct  945   RARNEKEKKECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKES  1004

Query  980   VRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEK  1039
             V+ Y+DCVS+A+N  ERK CEKLLTPEA+KLLEEAKES+KAYKDC+S+ARNE E++ CEK
Sbjct  1005  VKAYVDCVSRARNKKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEK  1064

Query  1040  LLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNA  1099
             LLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARK+L +Q L CL +A
Sbjct  1065  LLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKA  1124

Query  1100  KTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekLLTPEARKLLE-  1158
             + E EKK C+K+LPKDLQ +VLAKES+KAY DC+S+ARNE E++ CEKLLTPEARKLLE 
Sbjct  1125  RNEEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQ  1184

Query  1159  ESKKSVKAYLDCVSkakneaekkecekLLTPEARKLLE-EAKESVKAYKDCVSRARNEKE  1217
             E KKSVKAYLDCVS+A+NE EKKECEKLLTPEARK+L  E ++  KA KDC+  A + ++
Sbjct  1185  EVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA-DPND  1243

Query  1218  KQE---CEKLLTPEAR-KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLE  1273
             +     C   L+ E + K L++   K+V   LDC+  AR + EK+ C++L +   + + +
Sbjct  1244  RAAIMKCLDGLSDEEKLKYLQEAREKAV---LDCLKTARTDEEKRKCQNLYSDLIQEIQN  1300

Query  1274  KQRQQKDKAI---------KDCLKN-ADPNDRAAIMKCLDGLSDEEK  1310
             K+ Q K++ +          +CL N  DP D+ AI +CL+GLSD EK
Sbjct  1301  KRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSEK  1347

32) HPAG1_0502 in NC_008086


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1313 bits (4983),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1136/1336 (86%), Positives = 1200/1336 (90%), Gaps = 81/1336 (6%)

Query  1     MKDLPKDLQKKVLAKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEE---------  51
             +K++P+DLQK +LA  SVKAY DCVS+ARNEKEKKECEKLLTPEA+K LE+         
Sbjct  473   LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNA  532

Query  52    ----------------------AKESLKAYKDCVSKARNEEERRACeklltpeakkllee  89
                                   AKESLKAYKDCVS+A+NE E++ CEKLLTPEAKKLLEE
Sbjct  533   KTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEE  592

Query  90    eakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakneaek  149
             EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK EAEK
Sbjct  593   EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEK  652

Query  150   kecekLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCV  209
             KECEKLLTPEAKKLLEQQALDCLK+AKT+ ++K+C+KDLPKDLQKKVLAKES        
Sbjct  653   KECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKES--------  704

Query  210   SKARNekekkeceklltpeakklleeeakeSVKAYLDCVSQakneaekkeceklltpeak  269
                                            VKAYLDCVSQAK EAEKKECEKLLTPEAK
Sbjct  705   -------------------------------VKAYLDCVSQAKTEAEKKECEKLLTPEAK  733

Query  270   kkleeakksvkaYLDCVSQakneaekkecekLLTPEAKKLLEQQA-------LDCLKNAK  322
             K LEEAK S+KAY DCVS+A+NE EKKECEKLLTPEAKKLLE++A       LDC+ +A+
Sbjct  734   KLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQAR  793

Query  323   TDEERKKCLKDLPKDLQKKVL-AKKSVKAYLDCVSKARNekekkecekLLTPEARKLLE-  380
             T+ E+K C K L  + +KK+  AKKSVK YLDCVS+AR E EKKECEKLLTPEARKLLE 
Sbjct  794   TEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQ  853

Query  381   EAKESLKAYKDCVSKARNEEERRACeklltpeakklleeeakeSVKAYLDCVSQakteae  440
             E K S+KAY DCVS+ARNE E++ CEKLLTPEA+K LEE  K SVK YLDCVSQA+TEAE
Sbjct  854   EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKK-SVKVYLDCVSQARTEAE  912

Query  441   kke-ceklltpeakkkleeakksvkaYLDCVSQAKTEADKKECEKLLTPEAKKLLEQQAL  499
             KKE    L     K   +E KKSVKAYLDCVS+A+ E +KKECEKLLTPEAKK+LEQQAL
Sbjct  913   KKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKFLEQQAL  972

Query  500   DCLKNAKTEADKKRCVKDLPKDLQKKVLAKKSVKAYLDCVSKARNekekkecekLLTPEA  559
             DCLKNAKTE++KKRCVKDLPKDLQKKVLAK SVKAY+DCVS+ARN KE+K CEKLLTPEA
Sbjct  973   DCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERKACEKLLTPEA  1032

Query  560   RKLLEEAKESLKAYKDCVSKARNekekkecekLLTPEARKLLEQEVKKSVKAYLDCVSRA  619
             +KLLEEAKESLKAYKDC+S+ARNE E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRA
Sbjct  1033  KKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1092

Query  620   RNekekkecekLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLK  679
             RNEKEKKECEKLLTPEARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQENVLAKESLK
Sbjct  1093  RNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQENVLAKESLK  1152

Query  680   AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNekekkecekL  739
             AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+ARNEKEKKECEKL
Sbjct  1153  AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKL  1212

Query  740   LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL  799
             LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL
Sbjct  1213  LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL  1272

Query  800   DCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQ  859
             DCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ
Sbjct  1273  DCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ  1332

Query  860   EAIEQCLEGLSDSERALILGIKRQADEVDLIYSELRNRKTFDNMAAKGYPLLPMDFKNGG  919
             +AIEQCLEGLSDSE+ALILGIKRQADEVDLIYS+LRNRKTFDNMAAKGYPLLPMDFKNGG
Sbjct  1333  QAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGG  1392

Query  920   DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGsnkkddd  979
             DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALG+NKKDDD
Sbjct  1393  DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDD  1452

Query  980   kekskkstaeskvesNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEK  1039
             KEKSKKSTAE+KVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EK
Sbjct  1453  KEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTEK  1512

Query  1040  QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL  1099
             QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL
Sbjct  1513  QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL  1572

Query  1100  LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN  1159
             LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN
Sbjct  1573  LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN  1632

Query  1160  NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS  1219
             NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS
Sbjct  1633  NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS  1692

Query  1220  AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT  1279
             AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT
Sbjct  1693  AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT  1752

Query  1280  LSREHEEITTSPKGGN  1295
             LSREHEEITTSPKGGN
Sbjct  1753  LSREHEEITTSPKGGN  1768


 Score =  366 bits (1375),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 396/588 (68%), Positives = 460/588 (79%), Gaps = 54/588 (9%)

Query  282  YLDCVSQakneaekkecekLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKK  341
            Y DC+ +AK EAEK+EC K L+ EA   L QQALDCLKNAKTDEER+ CLK++P+DLQK 
Sbjct  424  YKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKE  483

Query  342  VLAKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEE--------------------  381
            +LA  SVKAY DCVS+ARNEKEKKECEKLLTPEA+K LE+                    
Sbjct  484  LLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK  543

Query  382  -----------AKESLKAYKDCVSKARNEEERRACeklltpeakklleeeakeSVKAYLD  430
                       AKESLKAYKDCVS+A+NE E++ CEKLLTPEAKKLLEEEAKESVKAYLD
Sbjct  544  DLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLD  603

Query  431  CVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQAKTEADKKECEKLLTPEA  490
            CVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEA+KKECEKLLTPEA
Sbjct  604  CVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  663

Query  491  KKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKKSVKAYLDCVSKARNekekke  550
            KKLLEQQALDCLK+AKT+ ++K+C+KDLPKDLQKKVLAK SVKAYLDCVS+A+ E EKKE
Sbjct  664  KKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKE  723

Query  551  cekLLTPEARKLLEEAKESLKAYKDCVSKARNekekkecekLLTPEARKLLEQEVKKSVK  610
            CEKLLTPEA+KLLEEAKESLKAYKDCVS+ARNEKEKKECEKLLTPEA+KLLE+E K SVK
Sbjct  724  CEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVK  783

Query  611  AYLDCVSRARNekekkecekLLTPEARKFLA------KQVLNCLEKAGNEEERKACLKNL  664
             YLDCVS+AR E EKKECEKLLTPEARK L       K  L+C+ +A  E E+K C K L
Sbjct  784  VYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLL  843

Query  665  PKD----LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAY  720
              +    L+++V  K S+KAY DC+S+ARNE E++ CEKLLTPEARK LE E KKSVK Y
Sbjct  844  TPEARKLLEQEV--KKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLE-EAKKSVKVY  900

Query  721  LDCVSKARNekekkecekLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDG  780
            LDCVS+AR E EKKECEKLLTPEARK+L +E+++  KA  DC+  A  +        L  
Sbjct  901  LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKL--  958

Query  781  LSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNK  828
            L+ E K K+L++      LDCLK A+T+ EK++C +   DL +++Q+K
Sbjct  959  LTPEAK-KFLEQ----QALDCLKNAKTETEKKRCVK---DLPKDLQKK  998


 Score =  241 bits (900),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 267/549 (49%), Positives = 351/549 (64%), Gaps = 85/549 (15%)

Query  344  AKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEEAKESLKAYKDCVSKARNEEERR  403
             K++++A+ +C+S++ N  E      L     +KL ++ K +L AYKDC+ +A+ EEER 
Sbjct  304  DKNPLRAFYECISNGGNYEEC-----LKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERI  358

Query  404  ACeklltpeakklleeeakeSVKAYLDCVSQakteaekke----ceklltpeakkkleea  459
             C  L+  E  K    + +  V+  LDC+ +AKT+ E++E     +     E  +K    
Sbjct  359  KCLDLIKDENLKKSLLNQQ-KVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGI  417

Query  460  kksvkaYLDCVSQAKTEADKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLP  519
            +K ++ Y DC+ +AKTEA+K+EC K L+ EA   L QQALDCLKNAKT+ +++ C+K++P
Sbjct  418  QKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIP  477

Query  520  KDLQKKVLAKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEE--------------  565
            +DLQK +LA  SVKAY DCVS+ARNEKEKKECEKLLTPEA+K LE+              
Sbjct  478  QDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEE  537

Query  566  -----------------AKESLKAYKDCVSKARNekekkecekLLTPEARKLLEQEVKKS  608
                             AKESLKAYKDCVS+A+NE EKKECEKLLTPEA+KLLE+E K S
Sbjct  538  RKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKES  597

Query  609  VKAYLDCVSRARNekekkecekLL------------------------------------  632
            VKAYLDCVS+A+ E EKKECEKLL                                    
Sbjct  598  VKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEK  657

Query  633  --TPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  690
              TPEA+K+L +Q L+CL  A  +EERK CLK+LPKDLQ +VLAKES+KAY DC+SQA+ 
Sbjct  658  LLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKT  717

Query  691  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNekekkecekLLTPEARKFLAK  750
            E E++ CEKLLTPEA+KLLE E K S+KAY DCVS+ARNEKEKKECEKLLTPEA+K+L  
Sbjct  718  EAEKKECEKLLTPEAKKLLE-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEE  776

Query  751  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEARE--KAVLDCLKTARTD  808
            E ++  K   DC+ +A  +  A    C   L+ E + K L+EA+   K  LDC+  ART+
Sbjct  777  EAKESVKVYLDCVSQARTE--AEKKECEKLLTPEARKK-LEEAKKSVKVYLDCVSQARTE  833

Query  809  EEKRKCQNL  817
             EK+ C++L
Sbjct  834  AEKKECEKL  842


 Score =  204 bits (757),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 307/627 (49%), Positives = 386/627 (62%), Gaps = 123/627 (19%)

Query  282  YLDCVSQakneaekkecekLLTPEA--KKLLEQQ----ALDCLKNAKTDEERKKCLK---  332
            Y DC+ +AK E E+  C  L+  E   K LL+QQ    ALDCLKNAKTDEER+ CLK   
Sbjct  344  YKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLIN  403

Query  333  --DLPKDLQKKVLAKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEEAKESLKAYK  390
              ++   ++K +  +K ++ Y DC+ +A+ E EK+EC K L+ EA   L +  ++L    
Sbjct  404  DPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQ--QAL----  457

Query  391  DCVSKARNEEERRACeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltp  450
            DC+ +A+ +EER  C  L         E  A  SVKAY DCVS+A+ E EKKECEKLLTP
Sbjct  458  DCLKNAKTDEERNEC--LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTP  515

Query  451  eakkkleeakksvkaYLDCVSQAKTEADKKEC----------------------------  482
            EAKKKLE+        LDC+ +AKT+ ++K C                            
Sbjct  516  EAKKKLEQQV------LDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQA  569

Query  483  ---------EKLLTPEAKKLLEQQA-------LDCLKNAKTEADKKRCVKDL-PKDLQKK  525
                     EKLLTPEAKKLLE++A       LDC+ +AKTEA+KK C K L P   +K 
Sbjct  570  KNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKL  629

Query  526  VLAKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEE--------------------  565
              AKKSVKAYLDCVS+A+ E EKKECEKLLTPEA+KLLE+                    
Sbjct  630  EEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLK  689

Query  566  -----------AKESLKAYKDCVSKARNekekkecekLLTPEARKLLEQEVKKSVKAYLD  614
                       AKES+KAY DCVS+A+ E EKKECEKLLTPEA+KLLE E K S+KAY D
Sbjct  690  DLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE-EAKESLKAYKD  748

Query  615  CVSRARNekekkecekLLTPEARKFLAKQV-------LNCLEKAGNEEERKACLKNLPKD  667
            CVSRARNEKEKKECEKLLTPEA+K+L  +        L+C+ +A  E E+K C K L  +
Sbjct  749  CVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTEAEKKECEKLLTPE  808

Query  668  LQENV-LAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSK  726
             + ++  AK S+K Y DC+SQAR E E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVS+
Sbjct  809  ARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSR  868

Query  727  ARNekekkecekLLTPEARKFLAKELQQKDKAIK---DCLKNADPNDRAAIMKCLDGLSD  783
            ARNEKEK+ECEKLLTPEAR    K L++  K++K   DC+ +A  +  A    C   L+ 
Sbjct  869  ARNEKEKQECEKLLTPEAR----KKLEEAKKSVKVYLDCVSQARTE--AEKKECEKLLTP  922

Query  784  EEKLKYLQEAREKAV---LDCLKTART  807
            E + K L++   K+V   LDC+  AR 
Sbjct  923  EAR-KLLEQEVKKSVKAYLDCVSRARN  948


 Score = 70.2 bits (247),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 86/205 (42%), Positives = 131/205 (64%), Gaps = 10/205 (4%)

Query  14   AKKSVKAYLDCVSKARNekekkecekLLTPEARKLLEEAKESLKAYKDCVSKARNEEERR  73
             K++++A+ +C+S++ N  E      L     +KL ++ K +L AYKDC+ +A+ EEER 
Sbjct  304  DKNPLRAFYECISNGGNYEEC-----LKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERI  358

Query  74   ACeklltpeakklleeeakeSVKAYLDCVSQakteaekke----ceklltpeakkkleea  129
             C  L+  E  K    + +  V+  LDC+ +AKT+ E++E     +     E  +K    
Sbjct  359  KCLDLIKDENLKKSLLNQQ-KVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGI  417

Query  130  kksvkaYLDCVSQakneaekkecekLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLP  189
            +K ++ Y DC+ +AK EAEK+EC K L+ EA   L QQALDCLKNAKT+ +++ C+K++P
Sbjct  418  QKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIP  477

Query  190  KDLQKKVLAKESLKAYKDCVSKARN  214
            +DLQK +LA  S+KAYKDCVS+ARN
Sbjct  478  QDLQKELLADMSVKAYKDCVSRARN  502

33) cagY in NC_011498


> AB120424|7|G7|46091559|BAD13998.1|Helicobacter_pylori_OK109|-|7311..12617|HP0527|-|cag 
pathogenicity island protein
Length=1768

 Score = 1296 bits (4918),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1128/1346 (84%), Positives = 1194/1346 (89%), Gaps = 80/1346 (5%)

Query  635   YLDCVSQakneaekkecekLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKK  694
             Y DC+ +AK EAEK+EC K L+ EA   L QQALDCLKNAKT+ +++ C+K++P+DLQK 
Sbjct  424   YKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKE  483

Query  695   VLAKESVKAYLDCVSQakneaekkecekLLTPEARKLLEE--------------------  734
             +LA  SVKAY DCVS+A+NE EKKECEKLLTPEA+K LE+                    
Sbjct  484   LLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK  543

Query  735   -----------AKESVKAYKDCVSKARNekekkeceklltpeakklleeeakeSVKAYLD  783
                        AKES+KAYKDCVS+A+NE EKKECEKLLTPEAKKLLEEEAKESVKAYLD
Sbjct  544   DLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLD  603

Query  784   CVSQakteaekkeceklltPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA  843
             CVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E E++ CEKLLTPEA
Sbjct  604   CVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  663

Query  844   RKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekke  903
             +KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQ  +LAKESVKAY DCVSQAKTEAEKKE
Sbjct  664   KKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKE  723

Query  904   ceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltpeakkl-leeakksvk  962
             CEKLLTPEAKKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEAKKL  EEAK SVK
Sbjct  724   CEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKESVK  783

Query  963   aYLDCVSQakneaekkecekLLTPEAKKLLEQQA------LDCLKNAKTEADKKRCVKDL  1016
              YLDCVSQA+ EAEKKECEKLLTPEA+K LE+        LDC+ +A+TEA+KK C K L
Sbjct  784   VYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECEKLL  843

Query  1017  PKDLQKKVL---AKESVKAYLDCVSQakneaekkecekLLTPEARKLLEEAKESLKAYKD  1073
               +  +K+L    K SVKAYLDCVS+A+NE EK+ECEKLLTPEARK LEEAK S+K Y D
Sbjct  844   TPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVYLD  902

Query  1074  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE  1133
             C+SQAR E E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPE
Sbjct  903   CVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPE  962

Query  1134  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKES------------------  1175
             A+KFL +Q L+CL +A  E E+K C+K+LPKDLQ +VLAKES                  
Sbjct  963   AKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSRARNKKERK  1022

Query  1176  --------------------LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV  1215
                                 LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV
Sbjct  1023  ACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSV  1082

Query  1216  KAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQ  1275
             KAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKQVL+CLEKA NEEE+KACLKNLPKDLQ
Sbjct  1083  KAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLSCLEKARNEEEKKACLKNLPKDLQ  1142

Query  1276  ENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARN  1335
             ENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARN
Sbjct  1143  ENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARN  1202

Query  1336  EKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKY  1395
             EKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKY
Sbjct  1203  EKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKY  1262

Query  1396  LQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASEC  1455
             LQEAREKAV DCL  A+TDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASEC
Sbjct  1263  LQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASEC  1322

Query  1456  LDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDLIYSELRNRKTFDNMAAKGYP  1515
             LDNLDDPTDQQAIEQCLEGLSDSE+ALILGIKRQADEVDLIYS+LRNRKTFDNMAAKGYP
Sbjct  1323  LDNLDDPTDQQAIEQCLEGLSDSEKALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYP  1382

Query  1516  LLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklak  1575
             LLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAK
Sbjct  1383  LLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAK  1442

Query  1576  alggnkkdddkeksekstakakaesNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGN  1635
             ALGGNKKDDDKEKS KSTA AK ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGN
Sbjct  1443  ALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGN  1502

Query  1636  PIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKD  1695
             PIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKD
Sbjct  1503  PIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKD  1562

Query  1696  VWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGML  1755
             VWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGML
Sbjct  1563  VWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGML  1622

Query  1756  GEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALG  1815
             GEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALG
Sbjct  1623  GEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALG  1682

Query  1816  QAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVV  1875
             QAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVV
Sbjct  1683  QAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVV  1742

Query  1876  DEIIKQSTKTLSREHEEITTSPKGGN  1901
             DEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1743  DEIIKQSTKTLSREHEEITTSPKGGN  1768


 Score =  915 bits (3465),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1026/1423 (73%), Positives = 1151/1423 (81%), Gaps = 107/1423 (7%)

Query  1     MNEENDKLETSKKTQQDSPQDLSNEEATEVNHFEDLLKEESSD--NHLDNPTEIKTNFDG  58
             MNEENDKLETSKKTQQ+SPQDLSNEEATE NHFED  KE      + LDN TE KTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDNYTETKTNFDE  60

Query  59    DKLEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKnldeetqelneed  118
               LEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61    YELEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEED  120

Query  119   dqenneyqeetqtGLIDDETSKKTQQDSPQDLSNEEATEVNRFEDSLKEESSD--QHLDN  176
             DQENN YQEETQ +LIDDETSKKTQQ+SPQDLSNEEATE N+FEDS KE      + LDN
Sbjct  121   DQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHYLDN  180

Query  177   SAETQTNFDKDKSEEITNDSNDQEiikgskkkyiisglvvavliviilFSRSIFHYFMPL  236
             ++ET+TNFD  KSEEITNDSNDQEIIKGSKKKYII+G+VVAVLIVIILFSRSIFHYF+PL
Sbjct  181   PTETKTNFDEYKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPL  240

Query  237   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  296
             EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA
Sbjct  241   EDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIA  300

Query  297   EIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKC  356
             EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC
Sbjct  301   EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYKDCIKNAKTEEERIKC  360

Query  357   LDLIKDENLKKSLLNQQKVQVALDCLKKAKTDEERNECLKLINDPEIREKFRKELGLQKE  416
             LDLIKDENLKKSLLNQQKVQVALDCLK+AKTDEERNECLKLINDPEIREKFRKELG+QKE
Sbjct  361   LDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGIQKE  420

Query  417   LQVYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQVLDCLKNAKTDEERNECLKNIPQDL  476
             LQ YKDCIKNAKTEAEKNECLKGLSKEAIERLKQQ LDCLKNAKTDEERNECLKNIPQDL
Sbjct  421   LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDL  480

Query  477   QKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKK  536
             QKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK
Sbjct  481   QKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKK  540

Query  537   CLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKA  596
             CLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKA
Sbjct  541   CLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKA  600

Query  597   YLDCVSQakteaekkeceklltpeakklleeakksvkaYLDCVSQakneaekkecekLLT  656
             YLDCVSQAKTEAEKKECEKLLTPEAKK LEEAKKSVKAYLDCVSQAK EAEKKECEKLLT
Sbjct  601   YLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  660

Query  657   PEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakneae  716
             PEAKKLLEQQALDCLK+AKT+ ++K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAK EAE
Sbjct  661   PEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAE  720

Query  717   kkecekLLTPEARKLLEEAKESVKAYKDCVSKARNekekkeceklltpeakklleeeake  776
             KKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEEEAKE
Sbjct  721   KKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEEAKE  780

Query  777   SVKAYLDCVSQakteaekkeceklltPEARKLLEEAKESLKAYKDCLSQARNEEERRACE  836
             SVK YLDCVSQA+TEAEKKECEKLLTPEARK LEEAK S+K Y DC+SQAR E E++ CE
Sbjct  781   SVKVYLDCVSQARTEAEKKECEKLLTPEARKKLEEAKKSVKVYLDCVSQARTEAEKKECE  840

Query  837   KLLTPEARKLLEQQA-------LDCLKNAKTDEERKKCLKDLPKDLQSDI-LAKESVKAY  888
             KLLTPEARKLLEQ+        LDC+  A+ + E++ C K L  + +  +  AK SVK Y
Sbjct  841   KLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKVY  900

Query  889   KDCVSQakteaekke-ceklltpeakklleeakksvkaYLDCVSQakteaekkecekllt  947
              DCVSQA+TEAEKKE    L     K L +E KKSVKAYLDCVS+A+ E EKKECEKLLT
Sbjct  901   LDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLT  960

Query  948   peakklleeakksvkaYLDCVSQakneaekkecekLLTPE-AKKLLEQQA----LDCLKN  1002
             PEAKK+LE+        LDC+ +AK E+EKK C K L  +  KK+L +++    +DC+  
Sbjct  961   PEAKKFLEQQA------LDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYVDCVSR  1014

Query  1003  AKTEADKKRCVKDLPKDLQKKVL--AKESVKAYLDCVSQakneaekkecekLLTPEARKL  1060
             A+   ++K C K L  +  KK+L  AKES+KAY DC+SQA+NE E++ CEKLLTPEARKL
Sbjct  1015  ARNKKERKACEKLLTPE-AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL  1073

Query  1061  LE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARN  1119
             LE E K S+KAY DC+S+ARNE E++ CEKLLTPEARK+L ++V       L C+ +ARN
Sbjct  1074  LEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQV-------LSCLEKARN  1126

Query  1120  EKEKQECEKLLTPEAR-KFLAKQVL----NCLEKAGNEEERKACLKNLPKD----LQENV  1170
             E EK+ C K L  + + + LAK+ L    +CL +A NEEER+AC K L  +    L+++V
Sbjct  1127  EEEKKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEV  1186

Query  1171  LAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKE  1230
               K S+KAY DC+S+ARNE E++ CEKLLTPEARK+L +E+++  KA  DC+  A     
Sbjct  1187  --KKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA-----  1239

Query  1231  KQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDC  1290
                      P+ R      +++CL+  ++EE     LK L    +  VL         DC
Sbjct  1240  --------DPNDR----AAIMKCLDGLSDEEK----LKYLQEAREKAVL---------DC  1274

Query  1291  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1350
             L  AR +EE+R C++L +      L QE++          ++  + K++Q     L+   
Sbjct  1275  LKTARTDEEKRKCQNLYSD-----LIQEIQ----------NKRTQSKQNQ-----LSKTE  1314

Query  1351  RKFLAKELQQKDKAIKDCLKN-ADPNDRAAIMKCLDGLSDEEK  1392
             R      L+Q      +CL N  DP D+ AI +CL+GLSD EK
Sbjct  1315  R------LHQ----ASECLDNLDDPTDQQAIEQCLEGLSDSEK  1347


 Score =  289 bits (1081),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 263/511 (52%), Positives = 347/511 (68%), Gaps = 63/511 (12%)

Query  964   YLDCVSQakneaekkecekLLTPEA--KKLLEQQ----ALDCLKNAKTEADKKRCVK---  1014
             Y DC+ +AK E E+  C  L+  E   K LL+QQ    ALDCLKNAKT+ +++ C+K   
Sbjct  344   YKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLIN  403

Query  1015  --DLPKDLQKKVLAKESVKAYLDCVSQakneaekkecekLLTPEARKLLEEAKESLKAYK  1072
               ++   ++K +  +  ++ Y DC+ +AK EAEK+EC K L+ EA   L +  ++L    
Sbjct  404   DPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQ--QAL----  457

Query  1073  DCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTP  1132
             DCL +A+ +EER  C K +  + +K L  ++  SVKAY DCVSRARNEKEK+ECEKLLTP
Sbjct  458   DCLKNAKTDEERNECLKNIPQDLQKELLADM--SVKAYKDCVSRARNEKEKKECEKLLTP  515

Query  1133  EARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEER  1192
             EA+K L +QVL+CL +A  +EERK CLK+LPKDLQ ++LAKESLKAYKDC+SQA+NE E+
Sbjct  516   EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEK  575

Query  1193  RACEKLLTPEARKLLEQEVK--------------------------------------KS  1214
             + CEKLLTPEA+KLLE+E K                                      KS
Sbjct  576   KECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS  635

Query  1215  VKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDL  1274
             VKAYLDCVS+A+ E EK+ECEKLLTPEA+K+L +Q L+CL  A  +EERK CLK+LPKDL
Sbjct  636   VKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDL  695

Query  1275  QENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRAR  1334
             Q +VLAKES+KAY DC+SQA+ E E++ CEKLLTPEA+KLLE E K S+KAY DCVSRAR
Sbjct  696   QKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE-EAKESLKAYKDCVSRAR  754

Query  1335  NEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLK  1394
             NEKEK+ECEKLLTPEA+K+L  E ++  K   DC+ +A  +  A    C   L+ E + K
Sbjct  755   NEKEKKECEKLLTPEAKKLLEEEAKESVKVYLDCVSQARTE--AEKKECEKLLTPEARKK  812

Query  1395  YLQEARE--KAVADCLAMAKTDEEKRKCQNL  1423
              L+EA+   K   DC++ A+T+ EK+ C++L
Sbjct  813   -LEEAKKSVKVYLDCVSQARTEAEKKECEKL  842


 Score =  205 bits (761),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 206/491 (42%), Positives = 290/491 (60%), Gaps = 85/491 (17%)

Query  1027  KESVKAYLDCVSQakneaekkecekLLTPEA--RKLLEEAKESLKAYKDCLSQARNEEER  1084
             K ++ AY DC+ +AK E E+  C  L+  E   + LL++ K  +    DCL +A+ +EER
Sbjct  338   KKTLEAYKDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVAL--DCLKNAKTDEER  395

Query  1085  RACEKLLT-PEARKLLEQE--VKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQ  1141
               C KL+  PE R  + +E  ++K ++ Y DC+  A+ E EK+EC K L+ EA   L +Q
Sbjct  396   NECLKLINDPEIREKFRKELGIQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQ  455

Query  1142  VLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTP  1201
              L+CL +A  +EER+ CLKN+P+DLQ ++LA  S+KAYKDC+S+ARNE E++ CEKLLTP
Sbjct  456   ALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTP  515

Query  1202  EARKLLEQEV------------------------------KKSVKAYLDCVSRARNEKEK  1231
             EA+K LEQ+V                              K S+KAY DCVS+A+NE EK
Sbjct  516   EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKNEAEK  575

Query  1232  QECEKLLTPEARKFLAKQV-------LNCLEKAGNEEERKACLKNL-PKDLQENVLAKES  1283
             +ECEKLLTPEA+K+L  +        L+C+ +A  E E+K C K L P   +    AK S
Sbjct  576   KECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS  635

Query  1284  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQE-------------------------  1318
             +KAY DC+SQA+ E E++ CEKLLTPEA+KLLEQ+                         
Sbjct  636   VKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDL  695

Query  1319  -----VKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNAD  1373
                   K SVKAYLDCVS+A+ E EK+ECEKLLTPEA+K+L  E ++  KA KDC+  A 
Sbjct  696   QKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE-EAKESLKAYKDCVSRAR  754

Query  1374  PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVA---DCLAMAKTDEEKRKCQNLYSDLIQE  1430
              +        L  L+ E K K L+E    +V    DC++ A+T+ EK+ C++L   L  E
Sbjct  755   NEKEKKECEKL--LTPEAK-KLLEEEAKESVKVYLDCVSQARTEAEKKECEKL---LTPE  808

Query  1431  IQNKRTQSKQN  1441
              ++K  ++K++
Sbjct  809   ARKKLEEAKKS  819