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PAthogenisity Island DataBase (PAI DB)

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Homologs of HP0527 gene of AB120421

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HPSJM_02650
( YP_003928443.1 )

cag island protein

NC_014560
(Helicobacter pylori SJM180)

0.0

2) K748_07945
( YP_008337443.1 )

hypothetical protein

NC_021882
(Helicobacter pylori UM298)

0.0

3) K749_01335
( YP_007980064.1 )

hypothetical protein

NC_021216
(Helicobacter pylori UM299)

0.0

4) orf13/14
( NP_223194.1 )

cag island protein

NC_000921
(Helicobacter pylori J99)

0.0

5) HPSH169_02700
( YP_006225732.1 )

cag pathogenicity island protein (cag7)

NC_017740
(Helicobacter pylori Shi169)

0.0

6) HPPN135_02585
( YP_005789734.1 )

cag pathogenicity island protein

NC_017379
(Helicobacter pylori Puno135)

0.0

7) HPSH_04285
( YP_001910322.1 )

cag pathogenicity island protein CagY

NC_010698
(Helicobacter pylori Shi470)

0.0

8) cag7
( YP_007538436.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

9) K750_04135
( YP_007982183.1 )

hypothetical protein

NC_021217
(Helicobacter pylori UM037)

0.0

10) HPELS_03975
( YP_005424915.1 )

cag pathogenicity island protein (cag7)

NC_017063
(Helicobacter pylori ELS37)

0.0

11) HPPN120_02565
( YP_005788189.1 )

cag pathogenicity island protein (cag7)

NC_017378
(Helicobacter pylori Puno120)

0.0

12) cagY
( YP_003728737.1 )

cag pathogenicity island protein Y

NC_014256
(Helicobacter pylori B8)

0.0

13) HPSNT_02715
( YP_005786683.1 )

cag pathogenicity island protein (cag7)

NC_017376
(Helicobacter pylori Santal49)

0.0

14) cagY
( YP_005779063.1 )

cag island protein

NC_017368
(Helicobacter pylori F16)

0.0

15) cagY
( YP_005777271.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017367
(Helicobacter pylori F57)

0.0

16) HPV225_0522
( YP_005763455.1 )

cag pathogenicity island protein

NC_017355
(Helicobacter pylori v225d)

0.0

17) HPIN_04260
( YP_005782161.1 )

cag pathogenicity island protein (cag7)

NC_017372
(Helicobacter pylori India7)

0.0

18) HPSAT_04140
( YP_005768472.1 )

cag pathogenicity island protein (cagY, cag7)

NC_017359
(Helicobacter pylori Sat464)

0.0

19) HPPC18_02525
( YP_006228771.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017742
(Helicobacter pylori PeCan18)

0.0

20) K751_03260
( YP_007983632.1 )

hypothetical protein

NC_021218
(Helicobacter pylori UM066)

0.0

21) HPSH417_02515
( YP_006224150.1 )

cag pathogenicity island protein CagY

NC_017739
(Helicobacter pylori Shi417)

0.0

22) HP0527
( NP_207323.1 )

cag pathogenicity island protein (cag7)

NC_000915
(Helicobacter pylori 26695)

0.0

23) C694_02720
( YP_006934450.1 )

cag pathogenicity island protein (cag7)

NC_018939
(Helicobacter pylori 26695)

0.0

24) C695_02720
( YP_006893015.1 )

cag pathogenicity island protein (cag7)

NC_018937
(Helicobacter pylori Rif1)

0.0

25) C730_02720
( YP_006936056.1 )

cag pathogenicity island protein (cag7)

NC_018938
(Helicobacter pylori Rif2)

0.0

• Sequence Alignments

1) HPSJM_02650 in NC_014560


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1956 bits (7432),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1589/1852 (86%), Positives = 1654/1852 (90%), Gaps = 130/1852 (7%)

Query  9     ETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSD--NHLDNSTETQTHFDEDKLEETQT  66
             ETSKK+QQHSPQDLSNEEATEANHFED  KE      +HLDN TE++T+FDE   EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  67    QMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneeddqenneyq  126
             QMD  GNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEE DQENN YQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  127   eetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDNHLDNPTESSDNHLD  186
             EETQ +LIDDETSKK+QQHSPQDLSNEEATE NHFE         +   ++ ESSD+HLD
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFE---------DSSKESKESSDHHLD  309

Query  187   NSTESSDNHLDNPTETKTQETKTHFDEDKLEEITDDSNDQEiikgskkkyiiggivvavl  246
             N TE                +KT+FDE   EEIT+DSNDQEIIKGSKKKYIIGGIVVAVL
Sbjct  310   NYTE----------------AKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVL  353

Query  247   iviilFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL  306
             IVIILFSRSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL
Sbjct  354   IVIILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL  413

Query  307   FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECIGNGGNYEECLKLIKDKKLQEQMKKTLEA  366
             FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECI+NGGNYEECLKLIKDKKLQ+QMKKTLEA
Sbjct  414   FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEA  473

Query  367   YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLIN  426
             YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLIN
Sbjct  474   YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLIN  533

Query  427   DPEIrekfrkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA  486
             DPEIREKFRKEL LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA
Sbjct  534   DPEIREKFRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA  593

Query  487   KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKKLEQ  546
             KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQ
Sbjct  594   KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQ  653

Query  547   QVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCTSQAKTEDEKKECekllt  606
             QVLDCLKNAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDC SQA+TE EKKECEKLLT
Sbjct  654   QVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLT  713

Query  607   peakklleeeakeSVKAYLDCVSQAKTEDEKKECeklltpeakkkleeakksvkaYLDCV  666
             PEAKKLLEEEAKESVKAYLDCVSQAKTE EKKECEKLLTPEA+K LEEAK S+KAY DC+
Sbjct  714   PEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCL  773

Query  667   SQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKE  726
             SQA+ E+E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K C+KDLPKDLQKKVLAKE
Sbjct  774   SQARNEEERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKE  833

Query  727   SVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE-------------------------  761
             SVRVYLDCVSKAKNEAE+KECEKLLTPEA+K LE+                         
Sbjct  834   SVRVYLDCVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  893

Query  762   ------AKESVKAYLDCVSRARNekekkecekLLTPEARKLL-EESKKSVKAYLDCVSQA  814
                   AKES+KAY DCVS+AR E EKKECEKLLTPEA+KLL EE+K SVKAYLDCVSQA
Sbjct  894   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  953

Query  815   KNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNekekkecekLLTPEARKLLE  874
             K EAE+KECEKLLTPEARKLLEEAK SVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE
Sbjct  954   KTEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE  1013

Query  875   ESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYLDCVSRARNekek  934
             E+KKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAY DCVSRARNEKEK
Sbjct  1014  EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEK  1073

Query  935   kecekLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCV  994
             KECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCV
Sbjct  1074  KECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCV  1133

Query  995   SKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARK  1054
             SKAKNEAE+KECEKLLTPEARKLLEEAK SVKAYKDCVSRARNEKEK+ECEKLLTPEARK
Sbjct  1134  SKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARK  1193

Query  1055  LLEQEVKKSVKAYLDCVSRARNekekkecekLLTPKARKLLENQALDCLKNAKTEAEKKR  1114
             LLE E KKSVKAYLDCVS+A+NE E+KECEKLLTP ARKLLE+                 
Sbjct  1194  LLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE-----------------  1235

Query  1115  CVKDLPKDLQKKVLAKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLEEAKKSVKAY  1174
                           AKKSVKAY DCVSRARNEKEK+ECEKLLTPEARKLLEEAKKSVKAY
Sbjct  1236  --------------AKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAY  1281

Query  1175  LDCVSRARNEKEKQECEKLLTPEARKLLEEAKESLKAYKDCLSQARNETERRACEKLLTP  1234
             LDCVS+A+NE E++ECEKLLTPEARKLLEEAKESLKAYKDCLSQARNE ERRACEKLLTP
Sbjct  1282  LDCVSQAKNEAERKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTP  1341

Query  1235  EARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCL  1294
             EARK+LE++             R +++K  ++C K   P+ R            AI  CL
Sbjct  1342  EARKFLEKQ-------------RQQKDKAIKDCLKNANPNDR-----------AAIMKCL  1377

Query  1295  KNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQ  1354
                  +++               LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQ
Sbjct  1378  DGLSDEEK---------------LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQ  1422

Query  1355  EIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQ  1414
             EIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQ
Sbjct  1423  EIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQ  1482

Query  1415  ADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYAS  1474
             ADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYAS
Sbjct  1483  ADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYAS  1542

Query  1475  IEPDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTAETKAESNKIDKDVAE  1534
             IEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAE
Sbjct  1543  IEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAE  1602

Query  1535  TAKNISEIALKNKKEKSGDFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQY  1594
             TAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQY
Sbjct  1603  TAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQY  1662

Query  1595  TPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRL  1654
             TPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRL
Sbjct  1663  TPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRL  1722

Query  1655  MIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAP  1714
             MIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAP
Sbjct  1723  MIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAP  1782

Query  1715  IIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGD  1774
             IIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGD
Sbjct  1783  IIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGD  1842

Query  1775  SIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1826
             SIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1843  SIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  128 bits (467),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 149/217 (69%), Positives = 171/217 (79%), Gaps = 4/217 (1%)

Query  1    MNEENDKLETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSD--NHLDNSTETQTHFDE  58
            MNEENDKLETSKK+QQHSPQDLSNEEATEANHFED  KE      +HLDN TE++T+FDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  59   DKLEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneed  118
               EETQTQMD  GNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119  dqenneyqeetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHF--EDLLKEESSDNHLDN  176
            DQENN YQEETQ +LIDDETSKK+QQHSPQDLSNEEATE NHF        ESSD+HLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  177  PTESSDNHLDNSTESSDNHLDNPTETKTQETKTHFDE  213
             TE+  N  +  +E ++ ++D   +  ++ ++  + +
Sbjct  181  YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLAD  217

2) K748_07945 in NC_021882


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1910 bits (7254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1649/1900 (87%), Positives = 1757/1900 (93%), Gaps = 55/1900 (2%)

Query  1     MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
             MNEENDKLE SKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             Y SEETQTQMD GGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
             DQE+NGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
              TE+KTNFD Y SEETQTQMD GGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
             EEIQEPNEE DQE+NGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   kessdHHLDNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE+KTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERK  600
             FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   KCLKNIPKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLK  660
              CLKNIP+DLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAK SLKAYKDCVS+AR E EK+ECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkeceklltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKD  840
             E++ CEKLLTPEA+KLLE+QALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKES++ Y D
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   C--------------------------------VSRARNEKEKQECeklltpeakkllee  868
             C                                +  A+ + E++ C K L  + +  +  
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  869   eakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQA-------LDCLKSAKTDEE  921
                 S+KAY DCVSQA+TEAEKKECEKLLTPEAKKLLE++A       LDC+  AKT+ E
Sbjct  901   KE--SLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAE  958

Query  922   RKKCLKDLPKDLQKKVL--AKESLKAYKDCVSRARNEKEKQECeklltpeakklleeakk  979
             +K C K L  +  +K+L  AK S+KAYKDCVSRARNEKEK+ECEKLLTPEA+KLLEEAKK
Sbjct  959   KKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKK  1017

Query  980   slkaykDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECE  1039
             S+KAY DCVS+A+NE E++ECEKLLTPEA+KLLEEAKKS+KAYKDCVSRARNEKEK+ECE
Sbjct  1018  SVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECE  1077

Query  1040  KLLTPEAKNLLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRAR  1099
             KLLTPEA++LLE+QALDCLK+AKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+
Sbjct  1078  KLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAK  1137

Query  1100  NekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQ  1159
             NE EKKECEKLLTPEA+KLLEEAK S+KAYKDC+S+ARNE E++ CEKLLTPEARKLLE 
Sbjct  1138  NEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-  1196

Query  1160  EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL--AKQVL----SCLEKARNEEER  1213
             E KKSVKAYLDCVS+A+NE E++ECEKLLTPEARK+L  AK+ +     C+ +ARNE E+
Sbjct  1197  EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEK  1256

Query  1214  KACLKNIPKDLQKNVL--AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1271
             K C K +  +  +++L  AK S+KAY DC+SQA+NE ER+ CEKLLTPEARKLLE E K 
Sbjct  1257  KECEKLLTPE-ARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKE  1314

Query  1272  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM  1331
             S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIM
Sbjct  1315  SLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIM  1374

Query  1332  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQN  1391
             KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+QNKQN
Sbjct  1375  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQN  1434

Query  1392  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLR  1451
             QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR
Sbjct  1435  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR  1494

Query  1452  NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1511
             +RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE
Sbjct  1495  SRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1554

Query  1512  KTIkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKN  1571
             KTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKN
Sbjct  1555  KTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKN  1614

Query  1572  KKEKSGEFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1631
             KKEKSG+FVDENGNPIDDKKK E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD
Sbjct  1615  KKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1674

Query  1632  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1691
             ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG
Sbjct  1675  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1734

Query  1692  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1751
             VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK
Sbjct  1735  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1794

Query  1752  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1811
             GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF
Sbjct  1795  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1854

Query  1812  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1851
             SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1855  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

3) K749_01335 in NC_021216


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1910 bits (7254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1649/1900 (87%), Positives = 1757/1900 (93%), Gaps = 55/1900 (2%)

Query  1     MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
             MNEENDKLE SKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             Y SEETQTQMD GGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
             DQE+NGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
              TE+KTNFD Y SEETQTQMD GGNETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
             EEIQEPNEE DQE+NGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   kessdHHLDNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE+KTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERK  600
             FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   KCLKNIPKDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLK  660
              CLKNIP+DLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAK SLKAYKDCVS+AR E EK+ECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkeceklltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKD  840
             E++ CEKLLTPEA+KLLE+QALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKES++ Y D
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   C--------------------------------VSRARNEKEKQECeklltpeakkllee  868
             C                                +  A+ + E++ C K L  + +  +  
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  869   eakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQA-------LDCLKSAKTDEE  921
                 S+KAY DCVSQA+TEAEKKECEKLLTPEAKKLLE++A       LDC+  AKT+ E
Sbjct  901   KE--SLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAE  958

Query  922   RKKCLKDLPKDLQKKVL--AKESLKAYKDCVSRARNEKEKQECeklltpeakklleeakk  979
             +K C K L  +  +K+L  AK S+KAYKDCVSRARNEKEK+ECEKLLTPEA+KLLEEAKK
Sbjct  959   KKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKK  1017

Query  980   slkaykDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECE  1039
             S+KAY DCVS+A+NE E++ECEKLLTPEA+KLLEEAKKS+KAYKDCVSRARNEKEK+ECE
Sbjct  1018  SVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECE  1077

Query  1040  KLLTPEAKNLLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRAR  1099
             KLLTPEA++LLE+QALDCLK+AKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+
Sbjct  1078  KLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAK  1137

Query  1100  NekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQ  1159
             NE EKKECEKLLTPEA+KLLEEAK S+KAYKDC+S+ARNE E++ CEKLLTPEARKLLE 
Sbjct  1138  NEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-  1196

Query  1160  EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL--AKQVL----SCLEKARNEEER  1213
             E KKSVKAYLDCVS+A+NE E++ECEKLLTPEARK+L  AK+ +     C+ +ARNE E+
Sbjct  1197  EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEK  1256

Query  1214  KACLKNIPKDLQKNVL--AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1271
             K C K +  +  +++L  AK S+KAY DC+SQA+NE ER+ CEKLLTPEARKLLE E K 
Sbjct  1257  KECEKLLTPE-ARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKE  1314

Query  1272  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM  1331
             S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIM
Sbjct  1315  SLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIM  1374

Query  1332  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQN  1391
             KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+QNKQN
Sbjct  1375  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQN  1434

Query  1392  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLR  1451
             QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR
Sbjct  1435  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR  1494

Query  1452  NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1511
             +RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE
Sbjct  1495  SRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1554

Query  1512  KTIkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKN  1571
             KTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKN
Sbjct  1555  KTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKN  1614

Query  1572  KKEKSGEFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1631
             KKEKSG+FVDENGNPIDDKKK E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD
Sbjct  1615  KKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1674

Query  1632  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1691
             ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG
Sbjct  1675  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1734

Query  1692  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1751
             VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK
Sbjct  1735  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1794

Query  1752  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1811
             GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF
Sbjct  1795  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1854

Query  1812  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1851
             SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1855  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

4) orf13/14 in NC_000921


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1880 bits (7143),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1583/1843 (86%), Positives = 1658/1843 (90%), Gaps = 119/1843 (6%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQT  68
             ETSKK+QQ+SPQDLSNEEATEANHFED  KES ESSD+HLDN TE+KT+FDE   EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEETQKLneeddqennehq  128
             QMD GGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  NEE DQENN  Q
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   eetqtdLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTESSDNH  188
             EETQ DLIDDETS KTQQ+SPQDLSNEEATEANHFED  KES ESSD+HLDN TE     
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTE-----  313

Query  189   LDNPTETKTQETKTHFDEDKPEEITDDSNDQEiikgskkkyiiggivvavliviilFSRS  248
                        +KT+FDE  +EEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS
Sbjct  314   -----------AKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS  362

Query  249   IFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT  308
             IFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT
Sbjct  363   IFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT  422

Query  309   LYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAK  368
             LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK
Sbjct  423   LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK  482

Query  369   TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfr  428
             TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFR
Sbjct  483   TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFR  542

Query  429   kelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKEC  488
             KEL LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+EC
Sbjct  543   KELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNEC  602

Query  489   LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNA  548
             LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEK+ECEKLLTPEAKK LE+Q LDCLKNA
Sbjct  603   LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNA  662

Query  549   KTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQakteaekkeceklltpeakkllee  608
             KTDEERK CLKNLPKDLQSDILAKESLKAYKDC SQA+TEAEKKECEKLLTPEAKKLLEE
Sbjct  663   KTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEE  722

Query  609   eakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakkSVRAYLDCVSKAKNEAER  668
             EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S++AY DC+S+A+NE ER
Sbjct  723   EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEER  782

Query  669   KECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCV  728
             + CEKLLTPEA+KLLENQALDCLKNAKT+ E+K C+KDLPKDLQKKVLAKESVRVYLDCV
Sbjct  783   RACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCV  842

Query  729   SKAKNEAERKECEKLLTPEARKLLEE-------------------------------AKK  757
             SKAKNEAE+KECEKLLTPEA+K LE+                               AK 
Sbjct  843   SKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKE  902

Query  758   SVKAYKDCVLRARNEKEKQECEKLLTPEARKLL-EESKKSVKAYLDCVSKAKNEAERKEC  816
             S+KAYKDCV +AR E EK+ECEKLLTPEA+KLL EE+K SVKAYLDCVS+AK EAE+KEC
Sbjct  903   SLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKEC  962

Query  817   EKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEESKKSVKAY  876
             EKLLTPEARKLLEEAK SVKAYKDCVSRARNEKEK+ECEKLLTPEARKLLEE+KKSVKAY
Sbjct  963   EKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAY  1022

Query  877   LDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTP  936
             LDCVS+AKNEAERKECEKLLTPEARKLLEEAK SVKAYKDCVSRARNEKEK+ECEKLLTP
Sbjct  1023  LDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTP  1082

Query  937   EAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAER  996
             EA+KLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAE+
Sbjct  1083  EARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEK  1142

Query  997   KECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKS  1056
             KECEKLLTPEARKLLEEAK SVKAYKDCVSRARNEKEK+ECEKLLTPEARKLLE E KKS
Sbjct  1143  KECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKS  1201

Query  1057  VKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDL  1116
             VKAYLDCVS+A+NE E++ECEKLLTPEARKLLE+                          
Sbjct  1202  VKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE--------------------------  1235

Query  1117  QKKVLAKESVKAYLDCVSRARNekekkecekLLTPEARKLLEESKKSVKAYLDCVSkakn  1176
                  AK SVKAY DCVSRARNEKEKKECEKLLTPEARKLLEE+KKSVKAYLDCVS+AKN
Sbjct  1236  -----AKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKN  1290

Query  1177  eaekkecekLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQE  1236
             EAE+KECEKLLTPEARKLLEEAKES+KAYKDC+S+ARNE E++ CEKLLTPEARK+LE++
Sbjct  1291  EAERKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQ  1350

Query  1237  VKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRA  1296
                          R +++K  ++C K   P+ R            AI  CL     +++ 
Sbjct  1351  -------------RQQKDKAIKDCLKNANPNDR-----------AAIMKCLDGLSDEEK-  1385

Query  1297  AIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIqnkkaqn  1356
                           LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNK+AQN
Sbjct  1386  --------------LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQN  1431

Query  1357  kqnqLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYS  1416
             KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYS
Sbjct  1432  KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYS  1491

Query  1417  DLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQY  1476
             DLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQY
Sbjct  1492  DLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQY  1551

Query  1477  ETEKTIkdksleaklakalggdkkdddkekgkkPTAETKAESNKIDKDVAETAKNISEIA  1536
             ETEKTIKDKSLEAKLAKALGGDKKDDDKEK+KKPTAETKAESNKIDKDVAETAKNISEIA
Sbjct  1552  ETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIA  1611

Query  1537  LKNKKEKSGDFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTS  1596
             LKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTS
Sbjct  1612  LKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTS  1671

Query  1597  KVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAIT  1656
             KVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAIT
Sbjct  1672  KVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAIT  1731

Query  1657  PDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIG  1716
             PDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIG
Sbjct  1732  PDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIG  1791

Query  1717  LGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDD  1776
             LGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDD
Sbjct  1792  LGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDD  1851

Query  1777  IDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1819
             IDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1852  IDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  136 bits (501),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 160/216 (75%), Positives = 180/216 (84%), Gaps = 2/216 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDE  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFED  KES ESSD+HLDN TE+KT+FDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEETQKLneed  120
               EETQTQMD GGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q  NEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennehqeetqtdLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDN  180
            DQENN  QEETQ DLIDDETS KTQQ+SPQDLSNEEATEANHFED  KES ESSD+HLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  PTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDS  216
             TE+  N   +  E+   +T+ +F+ +   E +++S
Sbjct  181  YTEAKTNF--DEYESEETQTQMDFGGNETSESSNGS  214

5) HPSH169_02700 in NC_017740


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1860 bits (7066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1611/1938 (84%), Positives = 1711/1938 (89%), Gaps = 135/1938 (6%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+T AN+FEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
               SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119   dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDN  178
             DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES+ESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  179   STETKTNFDEYKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
              TE+KTNFDEY SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237   eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
             EEIQEPNEE DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  297   kkssdHHLDNYTETKANFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  356
             K SSDHHLDNYTE+K+NFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  357   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  416
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  417   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  476
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  477   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  536
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  537   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  596
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  597   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLK  656
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNE E+K CEKLLTPEAKK LE+Q LDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  657   NAKTEAEKKRCVKDLPKDLQSDILAKESVKAYRDCV------------------------  692
             NAKT+ E+K+C+K+LPKDLQSDILAKES+KAY+DCV                        
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  693   ---------------SQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQAkte  737
                            SQA+TEAEKKECEKLLTPEA+KLLEE    S+KAY DC+SQA+ E
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKE-SLKAYKDCLSQARNE  779

Query  738   tekkeceklltPEARKKLEE-------------------------------AKKSVKAYL  766
              E++ CEKLLTPEARK LE+                               AK SV+ YL
Sbjct  780   EERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYL  839

Query  767   DCVSQAktetekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL  826
             DCVS+AK E+EKKECEKLLTPEAKK LEQQ LDCLKNAKT+ E+K+C+K+LPKDLQ  +L
Sbjct  840   DCVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDIL  899

Query  827   AKESLKVYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQ  886
             AKESLK                                       YKDCVS+AR E EK+
Sbjct  900   AKESLKA--------------------------------------YKDCVSQARTEAEKK  921

Query  887   ECEKLLTPEAKKLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKES  937
             ECEKLLTPEAKKLLE++A       LDC+ +AKTEAEKK C K L  +  +K+L  AK S
Sbjct  922   ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPE-ARKLLEEAKKS  980

Query  938   LKVYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEK  997
             +K Y DCVS+A+ E EKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ERK CEK
Sbjct  981   VKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEK  1040

Query  998   LLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKLLEQQALDCLKNA  1057
             LLTPEARKLLE E KKSVKAY DCVS+A+ E EKKECEKLLTPEARKLLE+QALDCLKNA
Sbjct  1041  LLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNA  1099

Query  1058  KTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECeklltpeakkllee  1117
             KTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+NE EK+ECEKLLTPEA+KLLEE
Sbjct  1100  KTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEE  1159

Query  1118  akeslkaYKDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK  1177
             AK S+KAYKDCVS+ARNE E+K CEKLLTPEARKLLE E KKSVKAYLDCVS+A+NE E+
Sbjct  1160  AKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAER  1218

Query  1178  QECEKLLTPEARKFL--AKQAL----SCLEKARNEEERKACLKNIPKDLQKNVL--AKES  1229
             +ECEKLLTPEARK+L  AK+++     C+ +ARNE E+K C K +  +  +++L  AK S
Sbjct  1219  KECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKLLEEAKKS  1277

Query  1230  LKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECE  1289
             +KAY DC+SQA+NE ERK CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CE
Sbjct  1278  VKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACE  1336

Query  1290  KLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1349
             KLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKA
Sbjct  1337  KLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1396

Query  1350  VLDCLKTARSDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPT  1409
             VLDCLKTAR+DEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLHQASECLDNLDDPT
Sbjct  1397  VLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPT  1456

Query  1410  DQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1469
             DQEAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKN
Sbjct  1457  DQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKN  1516

Query  1470  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkd  1529
             GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKD
Sbjct  1517  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKD  1576

Query  1530  ddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkkt  1589
             DDKEKSKK+TAE++ ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK 
Sbjct  1577  DDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKE  1636

Query  1590  ekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1649
             EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM
Sbjct  1637  EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1696

Query  1650  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1709
             ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY
Sbjct  1697  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1756

Query  1710  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1769
             VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ
Sbjct  1757  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1816

Query  1770  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1829
             SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST
Sbjct  1817  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1876

Query  1830  KTLSREHEEITTSPKGGN  1847
             KTLSREHEEITTSPKGGN
Sbjct  1877  KTLSREHEEITTSPKGGN  1894

6) HPPN135_02585 in NC_017379


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1847 bits (7016),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1648/1943 (85%), Positives = 1729/1943 (89%), Gaps = 125/1943 (6%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    YKSEETQTQMDFGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             Y SEETQTQMDFGGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119   dqennGYQEET--------------------------IKANHFedsskeskess-dHLDN  151
             DQENNGYQEET                            ANHFEDSSKESKESS +HLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  152   STETKTNFDGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  209
              TE+KTNFD   SEETQTQMD G+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  210   eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  269
             EEIQEPNEE DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  270   kessdHHLDNPTETKTNFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  329
             KESSDHHLDN TE+KTNFDEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  330   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  389
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  390   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  449
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  450   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  509
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  510   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  569
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  570   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLK  629
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  630   NAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakkll  689
             NAKTDEERKKCLK+LPKDLQSDILAKES+KAYKDCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  690   eeeakeSVKAYLDCVSQakteaekkaceklltpeakkkleeakksvkaYLDCVSQaktea  749
             EEEAKESVKAYLDCVSQAKTEAEKK CEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  750   ekkacekLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLD  809
             E++ACEKLLTPEA+KLLE+QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  810   CVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTPEA  869
             CV                                      S+A+NE EK+ECEKLLTPEA
Sbjct  841   CV--------------------------------------SKAKNEAEKKECEKLLTPEA  862

Query  870   RKLLEQEVKKSVKAYKDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRA  929
             +K LEQ+V        DC+ +     E +       P   +    AKESLKAYKDCVS+A
Sbjct  863   KKKLEQQV-------LDCLKN-AKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQA  914

Query  930   RNekekkeceklltpeakklleeeakeSVKAYLDCVSQARTEAEKKECEKLLTPEARKKL  989
             R E EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA+TEAEKKECEKLLTPEARK L
Sbjct  915   RTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLL  974

Query  990   EEAKKSVKAYLDCVSQakteaekkeceklltPEARKLLE---------------------  1028
             EEAKKSVKAY DCVS+A+ E EKKECEKLLTPEARKLLE                     
Sbjct  975   EEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAE  1034

Query  1029  ----------------QEVKKSVKAYLDCVSRARNekekkecekLLTPEAKKLLEQQALD  1072
                             +E KKSVKAY DCVSRARNEKEKKECEKLLTPEA+KLLE+QALD
Sbjct  1035  RKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALD  1094

Query  1073  CLKNAKTESERKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekLLTPEAR  1132
             CLKNAKTE+E+KRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+NE EKKECEKLLTPEAR
Sbjct  1095  CLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEAR  1154

Query  1133  KLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRAR  1192
             KLLEEAK S+KAYKDC+S+ARNE E+K CEKLLTPEARKLLE E KKSVKAYLDCVS+A+
Sbjct  1155  KLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAK  1213

Query  1193  NEKEKQECEKLLTPEARKFL--AKQVL----SCLEKARNEEERKACLKDIPKDLQKNVL-  1245
             NE E++ECEKLLTPEARK+L  AK+ +     C+ +ARNE E+K C K +  +  +++L 
Sbjct  1214  NEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKLLE  1272

Query  1246  -AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKE  1304
              AK S+KAY DC+SQA+NE ERK CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E
Sbjct  1273  EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEE  1331

Query  1305  KQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQE  1364
             ++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQE
Sbjct  1332  RRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQE  1391

Query  1365  AREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDN  1424
             AREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLHQASECLDN
Sbjct  1392  AREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDN  1451

Query  1425  LDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLP  1484
             LDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLP
Sbjct  1452  LDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLP  1511

Query  1485  MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalg  1544
             MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALG
Sbjct  1512  MDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALG  1571

Query  1545  gnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPId  1604
             G+KKDDDKEKSKK+TAE++ ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPID
Sbjct  1572  GDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPID  1631

Query  1605  dkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN  1664
             DKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN
Sbjct  1632  DKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWN  1691

Query  1665  MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA  1724
             MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA
Sbjct  1692  MNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEA  1751

Query  1725  GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI  1784
             GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI
Sbjct  1752  GVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAI  1811

Query  1785  NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI  1844
             NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI
Sbjct  1812  NGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEI  1871

Query  1845  IKQSTKTLSREHEEITTSPKGGN  1867
             IKQSTKTLSREHEEITTSPKGGN
Sbjct  1872  IKQSTKTLSREHEEITTSPKGGN  1894

7) HPSH_04285 in NC_010698


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1842 bits (6996),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1647/1906 (87%), Positives = 1739/1906 (92%), Gaps = 64/1906 (3%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDE  60
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESS+HHLDN TE+KTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             Y SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119   dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDN  178
             DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSS ESKE+SDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  179   STETKTNFDGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
              TE+KTNFD   SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237   eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
             EEIQEPNEE DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  297   kensdHHLDNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  356
             KE+SDHHLDN TE+KTNFD   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  357   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  416
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  417   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  476
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  477   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  536
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  537   frkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERK  596
             FRKEL LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  597   KCLKNIPQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLK  656
              CLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  657   NAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakkll  716
             NAKTDEERKKCLK+LPKDLQSDILAKES+KAYKDCVSQARTEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  717   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  776
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  777   ekkeceklltPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLD  836
             E++ CEKLLTPEARKLLE+QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  837   CVSQakteaekkeceklltpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpea  896
             CVS+AK EAEKKECEKLLTPEAKK LE+         DC+ +A+T+ E+K C  L     
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVL------DCLKNAKTDEERKKC--LKNLPK  892

Query  897   kklleeeakeSVKAYLDCVSRARNEKEKQECEKLLTPEARKKL-EEAKKSVKAYLDCVSQ  955
                 +  AKES+KAY DCVS+AR E EK+ECEKLLTPEA+K L EEAK SVKAYLDCVSQ
Sbjct  893   DLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ  952

Query  956   akteaekkeceklltPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKV  1009
             AKTEAEKKECEKLLTPEA+KLLE+         DC+  A+ E EKK C K L  +  +K+
Sbjct  953   AKTEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKL  1011

Query  1010  L--AKESLKAYKDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSRARNek  1067
             L  AK S+KAY DCVS+A+NE E+KECEKLLTPEA+KLLEEAK S+KAYKDCVSRARNEK
Sbjct  1012  LEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEK  1071

Query  1068  ekkecekLLTPEARKLLEE-------------------------------AKKSVKAYLD  1096
             EKKECEKLLTPEARKLLE+                               AK SV+ YLD
Sbjct  1072  EKKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  1131

Query  1097  CVSRARNekekkecekLLTPEARKLLEEAKESLKAYKDCLSQARNEEERKACEKLLTPEA  1156
             CVS+A+NE EKKECEKLLTPEARKLLEEAK S+KAYKDC+S+ARNE E+K CEKLLTPEA
Sbjct  1132  CVSKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEA  1191

Query  1157  RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL--AKQAL----SCLEKA  1210
             RKLLE E KKSVKAYLDCVS+A+NE E++ECEKLLTPEARK+L  AK+++     C+ +A
Sbjct  1192  RKLLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRA  1250

Query  1211  RNEEERKACLKNIPKDLQKNVL--AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLL  1268
             RNE E+K C K +  +  +++L  AK S+KAY DC+SQA+NE ERK CEKLLTPEARKLL
Sbjct  1251  RNEKEKKECEKLLTPE-ARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLL  1309

Query  1269  EQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPN  1328
             E E K+S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PN
Sbjct  1310  E-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPN  1368

Query  1329  DRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAKTDEEKRKCQNLYSDLIQEIQNKR  1388
             DRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTA+TDEEKRKCQNLYS+LIQEIQNKR
Sbjct  1369  DRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKR  1428

Query  1389  AQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDL  1448
             AQ+KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD 
Sbjct  1429  AQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDR  1488

Query  1449  IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIT  1508
             IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIT
Sbjct  1489  IYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIT  1548

Query  1509  KQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNIS  1568
             KQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE++ ESNKIDKDVAETAKNIS
Sbjct  1549  KQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNIS  1608

Query  1569  EIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEIT  1628
             EIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEIT
Sbjct  1609  EIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEIT  1668

Query  1629  LTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTK  1688
             LTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTK
Sbjct  1669  LTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTK  1728

Query  1689  AITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVVASVVNSFLQTAPIIALDK  1748
             AITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV+ASVVNSFLQTAPIIALDK
Sbjct  1729  AITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDK  1788

Query  1749  LIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILT  1808
             LIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILT
Sbjct  1789  LIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILT  1848

Query  1809  MDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1854
             MDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1849  MDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

8) cag7 in NC_020509


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1838 bits (6982),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1686/1936 (88%), Positives = 1783/1936 (93%), Gaps = 81/1936 (4%)

Query  1     MNEENDKFETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDE  60
             MNEENDK+ETSKKTQQHSPQDLSNEE+TEAN+FEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    YKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneed  120
             Y SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   nqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDN  180
             +QENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+T AN+FEDSSKESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETKTNFDEYESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLd  240
              TE+KTNFDEYESEETQTQMD GGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskes  300
             EEIQEPNEE DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEAN+FEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   kessdHHLDNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE+KTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERK  600
             FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEDEKKECeklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDCVSQA+TE EKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkeceklltPEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLD  840
             E++ CEKLLTPEA+KLLE QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+    
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRV---  837

Query  841   CVSQakteaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEA  900
                                                Y DC+S+A+NE E++ CEKLLTPEA
Sbjct  838   -----------------------------------YLDCVSKAKNEAEKKECEKLLTPEA  862

Query  901   KKLLEQEV------------------------------KKSVKAYLDCISKARNEREKQE  930
             KK LEQ+V                              K S+KAY DC+S+AR E EK+E
Sbjct  863   KKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKE  922

Query  931   Ceklltpeakkl-leeakeslkaYKDCVSRARNekekkeceklltpeakklleeeakeSV  989
             CEKLLTPEAKKL  EEAKES+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEE  K SV
Sbjct  923   CEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKK-SV  981

Query  990   KAYLDCVSQakteaekkeceklltpeakklleeakksvkaYLDCVSQakteaekkecekl  1049
             KAY DCVS+A+ E EKKECEKLLTPEA+KLLEEAKKSVKAYLDCVSQAK EAE+KECEKL
Sbjct  982   KAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKL  1041

Query  1050  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQALDCLKNAKT  1109
             LTPEA+KLLEEAKKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+QALDCLKNAKT
Sbjct  1042  LTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNAKT  1101

Query  1110  EAEKKRCVKDIPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeak  1169
             EAEKKRCVKD+PKDLQKKVLAKESV+ YLDCVS+A+NE EKKECEKLLTPEA+KLLEEAK
Sbjct  1102  EAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAK  1161

Query  1170  eslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQE  1229
              S+KAYKDC+S+ARNE E++ CEKLLTPEA+KLLE E KKSVKAYLDCVS+A+NE E++E
Sbjct  1162  KSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAERKE  1220

Query  1230  CEKLLTPEARKFL--AKQVL----SCLEKARNEEERKACLKNIPKDLQKNVL--AKESLK  1281
             CEKLLTPEARK+L  AK+ +     C+ +ARNE E+K C K +  +  +++L  AK S+K
Sbjct  1221  CEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKLLEEAKKSVK  1279

Query  1282  AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKL  1341
             AY DC+SQA+NE ER+ CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CEKL
Sbjct  1280  AYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKL  1338

Query  1342  LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL  1401
             LTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL
Sbjct  1339  LTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVL  1398

Query  1402  DCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ  1461
             DCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLHQASECLDNLDDPTDQ
Sbjct  1399  DCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQ  1458

Query  1462  EAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGG  1521
             EAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGG
Sbjct  1459  EAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGG  1518

Query  1522  DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLANALGGNkkddd  1581
             DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLA+ALGG+KKDDD
Sbjct  1519  DIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDD  1578

Query  1582  kekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktek  1641
             KEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EK
Sbjct  1579  KEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEK  1638

Query  1642  qdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL  1701
             QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL
Sbjct  1639  QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMIL  1698

Query  1702  LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN  1761
             LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN
Sbjct  1699  LDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVN  1758

Query  1762  NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS  1821
             NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS
Sbjct  1759  NHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSS  1818

Query  1822  AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT  1881
             AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT
Sbjct  1819  AQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKT  1878

Query  1882  LSREHEEITTSPKGGN  1897
             LSREHEEITTSPKGGN
Sbjct  1879  LSREHEEITTSPKGGN  1894

9) K750_04135 in NC_021217


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1832 bits (6960),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1622/1976 (83%), Positives = 1710/1976 (87%), Gaps = 137/1976 (6%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSD--NHLENSTETQTNFDG  58
             MNEENDKLETSKKTQQHSPQDLSNEEATEANHF D  KE      +HL+N TE++TNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  59    DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEY  118
                EETQTQMD GGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEY
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119   DQENSEYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSD--NHLDN  176
             DQEN+ YQEETQ +LIDDETSKKTQQHSPQDLSNEEATEANHF D  KE      +HLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  177   STETKSNFDGDKLEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnld  236
              TE+K+NFD    EETQTQ+D GGNETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237   eetqelneeddqennGYQEETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEE  296
             EE QE NEE DQENNGYQEETQ DLIDDETSKKTQQ+SPQ  SNEEATE NHFED  KE 
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  297   SSD--NHLDNPTETQTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  354
                  +HLDN TE++TNFD   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  355   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  414
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  415   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKN  474
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  475   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  534
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  535   FRKELGLQKELQEYKDCIKNAKTEAEKNKCLKSLSKEAIERLKQQALDCLKNAKTDEERN  594
             FRKELGLQKELQEYKDCIKNAKTEAEKN CLK+LSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  595   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLK  654
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  655   NAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEDEKKECeklltpeakkll  714
             NAKTDEERKKCLK+LPKDLQSDILAKES+KAYKDCVSQA+TE EKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  715   eeeakkSVKAYLDCVSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQaktea  774
             EEEAK SVKAYLDCVSQAKTE EKKECEKLLTPEA+K LEE+K S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  775   ekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLD  834
             E++ CEKLLTPEA+KLLE+QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  835   CVSQakneaekkecekLLTPEARKLLEE-------------------------------A  863
             CVS+AKNEAEKKECEKLLTPEA+K LE+                               A
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  864   KESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSVKAYLDCVSQAKTEDEKK  923
             KES+KAYKDCVSQA+TE EKKECEKLLTPEAKKLLEEEAK SVKAYLDCVSQAKTE EKK
Sbjct  901   KESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  960

Query  924   ECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQA----  979
             ECEKLLTPEA+K LEE+KKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+      
Sbjct  961   ECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1020

Query  980   --LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVKAYLDCVSRARNekekkecekL  1035
               LDC+ +AK EAE+K C K L  +  +K+L  AK SVKAY DCVSRARNEKEKKECEKL
Sbjct  1021  AYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKL  1079

Query  1036  LTPeakkkleeskesvkaYLDCVSRARNekekkecekLLTPeakkkleeskksvkaYLDC  1095
             LTPEA+K LE+        LDC+  A+ E EKK C K L P   +K   +K SV+ YLDC
Sbjct  1080  LTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDL-PKDLQKKVLAKESVRVYLDC  1132

Query  1096  VSQakteaekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL--  1153
             VS                                +AK EAEKK C K L  +  +K+L  
Sbjct  1133  VS--------------------------------KAKNEAEKKECEKLLTPE-ARKLLEE  1159

Query  1154  AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERR  1213
             AK SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+
Sbjct  1160  AKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERK  1219

Query  1214  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFL------A  1267
              CEKLLTPEARKLLE E KKSVKAY DCVSRARNEKEKKECEKLLTPEARK+L       
Sbjct  1220  ECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSV  1278

Query  1268  KQVLNCLEKAGNEEERKACLKNLPKDLQENVL--AKESLKAYKDCLSQARNEEERRACEK  1325
             K  L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARNEEERRACEK
Sbjct  1279  KAYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARNEEERRACEK  1337

Query  1326  LLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAI  1385
             LLTPEARK+LE               + R++K+K                        AI
Sbjct  1338  LLTPEARKFLE---------------KQRQQKDK------------------------AI  1358

Query  1386  KDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS  1445
             KDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS
Sbjct  1359  KDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS  1418

Query  1446  DLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILG  1505
             +LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILG
Sbjct  1419  GLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILG  1478

Query  1506  IKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNP  1565
             IKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNP
Sbjct  1479  IKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNP  1538

Query  1566  IYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkeksekstakakaesNKIDK  1625
             IYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKS K+TA +KAESNKIDK
Sbjct  1539  IYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDK  1598

Query  1626  DVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDPTFV  1685
             DVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKK E QDETSPVKQAFIGKSDPTFV
Sbjct  1599  DVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFV  1658

Query  1686  LAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPI  1745
             LAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPI
Sbjct  1659  LAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPI  1718

Query  1746  MTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFL  1805
             MTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFL
Sbjct  1719  MTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFL  1778

Query  1806  QTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYK  1865
             QTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYK
Sbjct  1779  QTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYK  1838

Query  1866  NEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1921
             NEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1839  NEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

10) HPELS_03975 in NC_017063


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1809 bits (6870),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1623/1942 (84%), Positives = 1703/1942 (88%), Gaps = 134/1942 (6%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSD--NHLDNSTETKTQETK  58
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFED+ KE      +HLDN TE+KT    
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKT----  56

Query  59    THFDEDKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQK  118
              +FDE   EETQTQMD GGNETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE Q 
Sbjct  57    -NFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQE  115

Query  119   LNKEDDQENNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSD  178
              N E DQENNGYQEETQ DLIDDETSKK+QQ+SPQDLSNEEATEANHFED  KESKESSD
Sbjct  116   PNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSD  175

Query  179   NHLDNPTETKTHFDKDKLEETQTQIDsggnetsessngsLADKLFKKARKLVDDKRPFTQ  238
             +HLDN TE+KT+FD    EETQTQ+D GGNETSESSNGSLADKLFKKARKLVD+KRPFTQ
Sbjct  176   HHLDNYTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQ  235

Query  239   QKSLDEEAQKLNKEDDQENNGYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFED  298
             QK+LDEE Q  N E DQENNGYQEETQ DLIDDETSKKTQQHSPQDLSNEEATE NHFED
Sbjct  236   QKNLDEEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFED  295

Query  299   SLKEESSD--NHLDNPTETKTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliv  356
             S KE      +HLDN TE+KTNFD   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIV
Sbjct  296   SSKESKESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIV  355

Query  357   iilFSRSIFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFF  416
             IILFSRSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFF
Sbjct  356   IILFSRSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFF  415

Query  417   NDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYN  476
             NDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYN
Sbjct  416   NDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYN  475

Query  477   DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDP  536
             DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDP
Sbjct  476   DCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDP  535

Query  537   EIrekfrkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKT  596
             EIREKFRKEL LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKT
Sbjct  536   EIREKFRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKT  595

Query  597   DEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEARKKLEQQV  656
             DEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEA+KKLEQQV
Sbjct  596   DEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQV  655

Query  657   LDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpe  716
             LDCLKNAKTDEERKKCLK+LPKDLQSDILAKES+KAYKDCVSQA+TEAEKKECEKLLTPE
Sbjct  656   LDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPE  715

Query  717   akklleeeakeSVKAYLDCVSkakneaekkeceklltpeakkkleeakksvkaYLDCVSQ  776
             AKKLLEEEAKESVKAYLDCVS+AK EAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQ
Sbjct  716   AKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQ  775

Query  777   AKTEAEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV  836
             A+ E E++ CEKLLTPEA+KLLE+QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV
Sbjct  776   ARNEEERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV  835

Query  837   RVYLDCVSQAKTEAERKECEKLLTPEARKLLEE---------------------------  869
             RVYLDCVS+AK EAE+KECEKLLTPEA+K LE+                           
Sbjct  836   RVYLDCVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQ  895

Query  870   ----AKKSVKAYKDCVSRARNekekkecekLLTPEARKLL-EEAKKSVKAYLDCVSQakt  924
                 AK S+KAYKDCVS+AR E EKKECEKLLTPEA+KLL EEAK SVKAYLDCVSQAKT
Sbjct  896   SDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKT  955

Query  925   eaekkeceklltPEARKLLEEAKKSVKLF---GLRISGKLSGKKRREIDSRPEARKLLEN  981
             EAEKKECEKLLTPEARKLLEEAKKSVK +     R       K    + + PEARKLLE+
Sbjct  956   EAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLT-PEARKLLEE  1014

Query  982   QA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVRVYLDCVSkakteaek  1033
                     LDC+ +AK EAE+K C K L  +  +K+L  AK SV+ Y DCVS+A+ E EK
Sbjct  1015  AKKSVKAYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEK  1073

Query  1034  keceklltPEARKLLEE-------------------------------AKESVKAYKDCV  1062
             KECEKLLTPEARKLLE+                               AKESV+ Y DCV
Sbjct  1074  KECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCV  1133

Query  1063  SRARNEKEKQECEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAR  1122
             S+A+NE EK+ECEKLLTPEA+KLLE E KKSVKAY DCVSRARNEKEKKECEKLLTPEAR
Sbjct  1134  SKAKNEAEKKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEAR  1192

Query  1123  KFLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVKAYLDCVSRAR  1174
             K+LE+        LDC+ +AK EAE+K C K L  +  +K+L  AK SVKAY DCVSRAR
Sbjct  1193  KLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRAR  1251

Query  1175  NekekkeceklltpeakklleeakesvkaYLDCVSRARNekekkecekLLTPEARKLLEE  1234
             NEKEKKECEKLLTPEA+KLLEEAK SVKAYLDCVS+A+NE E+KECEKLLTPEARKLLEE
Sbjct  1252  NEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE  1311

Query  1235  AKESLKAYKDCLSQARNETERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK  1294
             AKESLKAYKDCLSQARNE ERRACEKLLTPEARK+LE               + R++K+K
Sbjct  1312  AKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLE---------------KQRQQKDK  1356

Query  1295  QECEKLLTPEARKFLEKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEA  1354
                                     AIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEA
Sbjct  1357  ------------------------AIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEA  1392

Query  1355  REKAVLDCLKTARTDEEKRKCQNLYSDLIQEIqnkkaqnkqnqLSKTERLHQASECLDNL  1414
             REKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNK+AQNKQNQLSKTERLHQASECLDNL
Sbjct  1393  REKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNL  1452

Query  1415  DDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPM  1474
             DDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPM
Sbjct  1453  DDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPM  1512

Query  1475  DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalgg  1534
             DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGG
Sbjct  1513  DFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGG  1572

Query  1535  dkkdddkekskkPTTETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIdd  1594
             DKKDDDKEKSKKPT+ETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDD
Sbjct  1573  DKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDD  1632

Query  1595  kkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM  1654
             KKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM
Sbjct  1633  KKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNM  1692

Query  1655  NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG  1714
             NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG
Sbjct  1693  NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAG  1752

Query  1715  VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN  1774
             VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN
Sbjct  1753  VDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAIN  1812

Query  1775  GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII  1834
             GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII
Sbjct  1813  GSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEII  1872

Query  1835  KQSTKTLSREHEEITTSPKGGN  1856
             KQSTKTLSREHEEITTSPKGGN
Sbjct  1873  KQSTKTLSREHEEITTSPKGGN  1894

11) HPPN120_02565 in NC_017378


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1800 bits (6838),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1677/1910 (88%), Positives = 1766/1910 (93%), Gaps = 35/1910 (1%)

Query  1     MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskess-dHLDNSTETKTNFDG  59
             MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESS +HLDN TE+KTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  60    EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  117
               SEETQTQMD G+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  118   dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskess-dHLDN  176
             DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESS +HLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  177   STETKTNFDGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  234
              TE+KTNFD   SEETQTQMD G+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  235   eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  294
             EEIQEPNEE DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  295   kess-dHLDNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  353
             KESS +HLDN TE+KTNFD   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  354   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  413
             RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  414   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  473
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  474   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  533
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  534   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  593
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  594   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLK  653
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  654   NAKTDEERKKCLKDLPKDLQSDILAKESVKAYRDCVSQakteaekkeceklltpeakkll  713
             NAKTDEERKKCLK+LPKDLQSDILAKES+KAY+DCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  714   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  773
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  774   ekkeceklltPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLD  833
             E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  834   CVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEA  893
             CVS+AK EAEKKECEKLLTPEAKK LE+         DC+  A+ + E+K C K L  + 
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVL------DCLKNAKTDEERKKCLKNLPKD-  893

Query  894   RKLLEQEV--KKSVKAYLDCVSQakteaekke-ceklltpeakklleeakeslkaYKDCL  950
                L+ ++  K S+KAY DCVSQA+TEAEKKE    L     K L EEAKES+KAY DC+
Sbjct  894   ---LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCV  950

Query  951   SQARNEEERKACEKLLTPearklleeeakeSVKAYLDCVSQakteaekkeceklltPEAR  1010
             SQA+ E E+K CEKLLTP   + L EEAK SVKAY DCVS+A+ E EKKECEKLLTPEAR
Sbjct  951   SQAKTEAEKKECEKLLTP-EARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEAR  1009

Query  1011  KKLEEAKKSVKAYLDCVSQakteaekkeceklltPEARKLLEQEVKKSVKAYLDCVSRAR  1070
             K LEEAKKSVKAYLDCVSQAK EAE+KECEKLLTPEARKLLE E KKSVKAY DCVSRAR
Sbjct  1010  KLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRAR  1068

Query  1071  NekekkecekLLTPEARKLLEQQALDCLKSAKTEAERKRCVKDLPKDLQKKVLAKESVKA  1130
             NEKEKKECEKLLTPEARKLLE+QALDCLK+AKTEAE+KRCVKDLPKDLQKKVLAKESV+ 
Sbjct  1069  NEKEKKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRV  1128

Query  1131  YLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLT  1190
             YLDCVS+A+NE EKKECEKLLTPEA+KLLEEAK S+KAYKDC+S+ARNE E+K CEKLLT
Sbjct  1129  YLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLT  1188

Query  1191  PEARKLLEQEVKNSVKAYLDCVSRARNekekkecekLLTPEARKFL--AKQVL----SCL  1244
             PEARKLLE E K+SVKAYLDCVS+A+NE E+KECEKLLTPEARK+L  AK+ +     C+
Sbjct  1189  PEARKLLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCV  1247

Query  1245  EKARNEEERKAC---LKNIPKDLQKDVLAKESLKAYKDCLSQARNEEERKACEKLLTPEA  1301
              +ARNE E+K C   L   ++ L  +  AK S+KAY DC+SQA+NE ERK CEKLLTPEA
Sbjct  1248  SRARNEKEKKECEKLLTPEARKLLEE--AKKSVKAYLDCVSQAKNEAERKECEKLLTPEA  1305

Query  1302  RKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIKDCLKN  1361
             RKLLE E K S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKN
Sbjct  1306  RKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKN  1364

Query  1362  ADPNDRVAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1421
             A+PNDR AIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEI
Sbjct  1365  ANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEI  1424

Query  1422  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD  1481
             QNKR+Q+KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD
Sbjct  1425  QNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD  1484

Query  1482  EVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1541
             EVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE
Sbjct  1485  EVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1544

Query  1542  PDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTAEAKAESNKIDKDVAETA  1601
             PDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAE+KAESNKIDKDVAETA
Sbjct  1545  PDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETA  1604

Query  1602  KNISEIALKNKKEKSGDFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTP  1661
             KNISEIALKNKKEKSGDFVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTP
Sbjct  1605  KNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTP  1664

Query  1662  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1721
             IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI
Sbjct  1665  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1724

Query  1722  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1781
             VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII
Sbjct  1725  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1784

Query  1782  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1841
             ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI
Sbjct  1785  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1844

Query  1842  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1891
             KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1845  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

12) cagY in NC_014256


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1791 bits (6803),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1652/1900 (87%), Positives = 1731/1900 (92%), Gaps = 85/1900 (4%)

Query  1     MNEENDKLETSKKIQQHSPQDLSNEEATEANHFedsskeskessdHHLNNPTETKTNFDG  60
             MNEENDKLETSKK QQHSPQDLSNEEATEANHFEDSSKESKESSDHHL+N TE+KTNFD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelneed  120
               SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEE QE NEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   dqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDN  180
             DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETKTNFDEDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnld  240
              TE+KTNFDE  SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVDNKR FTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eetqelneeddqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskes  300
             EE QE NEE DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   kessdPYLDNPTETKTNFDEDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSD  LDN TE+KTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrek  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   frkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600
             FRKEL LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakneaekkeceklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKES+KAYKDCVSQA+ EAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQakte  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEE    S+KAY DC+SQA+ E
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKE-SLKAYKDCLSQARNE  779

Query  781   aekkeceklltPEARKKLEE-------------------------------AKKSVKAYK  809
              E++ CEKLLTPEARK LE+                               AK SV+ Y 
Sbjct  780   EERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYL  839

Query  810   DCVSQAKNEDEKKECEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVL  869
             DCVS+AKNE EKKECEKLLTPEA+K LEQQ LDCLKNAKTDEERKKCLK+LPKDLQ  +L
Sbjct  840   DCVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDIL  899

Query  870   AKES---------------------------------------VKAYLDCVSQakneaek  890
             AKES                                       VKAYLDCVSQAK EAEK
Sbjct  900   AKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEK  959

Query  891   kecekLLTPEARKLLEEAKESIKAYKDCVSKARNekekkeceklltpeakklleeeakeS  950
             KECEKLLTPEARKLLEEAK S+KAYKDCVS+ARNEKEKKECEKLLTPEA+KLLEE  K S
Sbjct  960   KECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKK-S  1018

Query  951   VKAYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecek  1010
             VKAYLDCVSQAK EAE+KECEKLLTPEA+KLLEEAK S+KAYKDCVSRARNEKEKKECEK
Sbjct  1019  VKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEK  1078

Query  1011  LLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARN  1070
             LLTPEA+KLLE+QALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESV+ Y DCVS+A+N
Sbjct  1079  LLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKN  1138

Query  1071  ekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEARKLLEQE  1130
             E EKKECEKLLTPEA+KLLEEAK S+KAYKDC+S+ARNE E++ CEKLLTPEARKLLE E
Sbjct  1139  EAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-E  1197

Query  1131  VKKSVKAYLDCVSQakteaekkeceklltPEARKFL--AKQVL----NCLEKAGNEEERK  1184
              KKSVKAYLDCVSQAK EAE+KECEKLLTPEARK+L  AK+ +    +C+ +A NE E+K
Sbjct  1198  AKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKK  1257

Query  1185  AC---LKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1241
              C   L   ++ L E+  AK S+KAY DC+SQA+NE ER+ CEKLLTPEARKLLE E K 
Sbjct  1258  ECEKLLTPEARKLLEE--AKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKE  1314

Query  1242  SVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM  1301
             S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIM
Sbjct  1315  SLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIM  1374

Query  1302  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQN  1361
             KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQN
Sbjct  1375  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQN  1434

Query  1362  QLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR  1421
             QLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR
Sbjct  1435  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR  1494

Query  1422  NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1481
             +RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE
Sbjct  1495  SRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1554

Query  1482  KTIkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKN  1541
             KTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKN
Sbjct  1555  KTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKN  1614

Query  1542  KKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1601
             KKEK+G+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD
Sbjct  1615  KKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1674

Query  1602  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1661
             ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG
Sbjct  1675  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1734

Query  1662  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1721
             VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK
Sbjct  1735  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1794

Query  1722  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1781
             GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF
Sbjct  1795  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1854

Query  1782  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1821
             SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1855  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

13) HPSNT_02715 in NC_017376


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1780 bits (6762),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1551/1807 (86%), Positives = 1654/1807 (92%), Gaps = 69/1807 (3%)

Query  9     ETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDEYESEETQT  68
             ETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDHHLDN TE+KTNFDEYESEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqennGYQ  128
             QMD GGNETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNF  188
             EETQ+DLIDDETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDHHLDN TE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  248
             DEY SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIKIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEI+IRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   KAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             +AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  549   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  609   kneaekkeceklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLTPEAKKLLE  668
             K EAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQAR E E++ CEKLLTPEA+KLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  669   QQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             +QALDCLKNAKTEA+KKRCVKDLPKDLQ                                
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQ--------------------------------  826

Query  729   tPEARKLLEEAKESVKAYKDCVSRARNekekkecekLLTPearklleeeakeSVKAYLDC  788
                 +K+L  AKESV+ Y DCVS+A+NE EKKECEKLLTPEA+K LE++        LDC
Sbjct  827   ----KKVL--AKESVRVYLDCVSKAKNEAEKKECEKLLTPEAKKKLEQQV-------LDC  873

Query  789   VSQakteaekkeceklltpeakkkleeakksakaylDCVSQakteaekkeceklltPEAR  848
             + +AKT+ E+K C K L  + +  +           DCVSQA+TEAEKKECEKLLTPEA+
Sbjct  874   LKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYK-DCVSQARTEAEKKECEKLLTPEAK  932

Query  849   KLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSRA  899
             KLLE++A       LDC+ +AKTEAEKK C K L  +  +K+L  AK S+KAYKDCVSRA
Sbjct  933   KLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRA  991

Query  900   RNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLLE  959
             RNEKEKKECEKLLTPEA+KLLEEAKKSVKAYLDCVSQAK EAE+KECEKLLTPEARKLLE
Sbjct  992   RNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE  1051

Query  960   EAKESLKAYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTDAEKKRCAKD  1019
             EAK S+KAYKDCVSRARNEKEKKECEKLLTPEA+KLLE+QALDCLKNAKT+AEKKRC KD
Sbjct  1052  EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKD  1111

Query  1020  LPKDLQKKVLAKESVKAYLDCVSRARNEKERKACeklltpeakklleeakeslkaYKDCL  1079
             LPKDLQKKVLAKESV+ YLDCVS+A+NE E+K CEKLLTPEA+KLLEEAK S+KAYKDC+
Sbjct  1112  LPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCV  1171

Query  1080  SQARNEEERRACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEAR  1139
             S+ARNE E++ CEKLLTPEARKLLE E K+SVKAYLDCVS+A+NE E++ECEKLLTPEAR
Sbjct  1172  SRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEAR  1230

Query  1140  KFL--AKQVL----SCLEKAKNEEERKAC---LKNLPKDLQENVLAKESLKAYKDCLSQA  1190
             K+L  AK+ +     C+ +A+NE E+K C   L   ++ L E+  AK S+KAY DC+SQA
Sbjct  1231  KLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEE--AKKSVKAYLDCVSQA  1288

Query  1191  RNEEERRACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL  1250
             +NE ER+ CEKLLTPEARKLLE E K+S+KAY DC+S+ARNE E++ CEKLLTPEARKFL
Sbjct  1289  KNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFL  1347

Query  1251  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1310
              K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD
Sbjct  1348  EKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1407

Query  1311  EEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG  1370
             EEKRKCQNLYS+LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEG
Sbjct  1408  EEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG  1467

Query  1371  LSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1430
             LSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATN
Sbjct  1468  LSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1527

Query  1431  VDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksta  1490
             VDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TA
Sbjct  1528  VDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTA  1587

Query  1491  eakaesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQ  1550
             E+KAESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQ
Sbjct  1588  ETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQ  1647

Query  1551  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1610
             AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG
Sbjct  1648  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1707

Query  1611  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1670
             NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF
Sbjct  1708  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1767

Query  1671  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAHMSNQILG  1730
             AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSA+MSNQILG
Sbjct  1768  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1827

Query  1731  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1790
             QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT
Sbjct  1828  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1887

Query  1791  TSPKGGN  1797
             TSPKGGN
Sbjct  1888  TSPKGGN  1894


 Score =  182 bits (676),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 173/199 (87%), Positives = 185/199 (93%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDE  60
            MNEENDKLETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDHHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YESEETQTQMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
            YESEETQTQMD GGNETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDN  180
            DQENNGYQEETQ+DLIDDETS+KTQQHSPQDLSNEEATE N+FEDSSKES E+SDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  PTETKTNFDEYKSEEITND  199
             TE+KTNFDEY SEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

14) cagY in NC_017368


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1774 bits (6737),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1493/1814 (83%), Positives = 1609/1814 (89%), Gaps = 84/1814 (4%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+HHLDN TE+KTNFDEYESEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNF  188
             EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+HHLDN TE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCVSKARNekekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECe  548
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKK LE+         DC+  A+ + E++ C 
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVL------DCLKNAKTDEERKKCL  672

Query  549   klltpeakklleeakkslkaykDCVSRARNEKEKQECEKLLTPEAKKLLEQQA-------  601
             K L  + +  +           DCVS+AR E EK+ECEKLLTPEAKKLLE++A       
Sbjct  673   KNLPKDLQSDILAKESLKAYK-DCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAY  731

Query  602   LDCLKNAKTDEERNECLKNIPQDLQKELLADM--SVKAYKDCVSKARNekekkecekllt  659
             LDC+ +AKT+ E++EC K +  + +K LL +   S+KAYKDC+S+ARNE E++ CEKLLT
Sbjct  732   LDCVSQAKTEAEKKECEKLLTPEARK-LLEEAKESLKAYKDCLSQARNEEERRACEKLLT  790

Query  660   peakklleeakeslkaYKDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVS  719
             PEA+KLLE+         DC+  A+ E EK+ C K L  + +K +           DCVS
Sbjct  791   PEARKLLENQAL------DCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYL-DCVS  843

Query  720   RARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES  779
             +A+NE EK+ECEKLLTPEAKK LEQQ LDCLKNAKT+ E+K+C+K+LPKDLQ  +LAKES
Sbjct  844   KAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKES  903

Query  780   VKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEK  839
             +KA                                      YKDCVS+AR E EK+ECEK
Sbjct  904   LKA--------------------------------------YKDCVSQARTEAEKKECEK  925

Query  840   LLTPEAKKLLEQQA-------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVKAY  890
             LLTPEAKKLLE++A       LDC+ +AKTEAEKK C K L  +  +K+L  AK SVKAY
Sbjct  926   LLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPE-ARKLLEEAKKSVKAY  984

Query  891   LDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTP  950
              DCVSRARNEKEK+ECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ CEKLLTP
Sbjct  985   KDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTP  1044

Query  951   EAKKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEA  1010
             EA+KLLE E KKSVKAY DCVSRARNEKEK+ECEKLLTPEA+KLLE+QALDCLKNAKTEA
Sbjct  1045  EARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNAKTEA  1103

Query  1011  EKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakes  1070
             EKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+NE EKKECEKLLTPEA+KLLEEAK S
Sbjct  1104  EKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKKS  1163

Query  1071  lkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNEKEKQECE  1130
             +KAYKDC+S+ARNE E++ CEKLLTPEA+KLLE E KKSVKAYLDCVS+A+NE E++ECE
Sbjct  1164  VKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAERKECE  1222

Query  1131  KLLTPEARKFL--AKQVL----NCLEKARNEEERKACLKNIPKDLQKNVL--AKESLKAY  1182
             KLLTPEARK+L  AK+ +    +C+ +ARNE E+K C K +  +  +++L  AK S+KAY
Sbjct  1223  KLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKLLEEAKKSVKAY  1281

Query  1183  KDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT  1242
              DC+SQA+NE ER+ CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CEKLLT
Sbjct  1282  LDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLT  1340

Query  1243  PEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDC  1302
             PEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDC
Sbjct  1341  PEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDC  1400

Query  1303  LKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEA  1362
             LKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLHQASECLDNLDDPTDQEA
Sbjct  1401  LKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEA  1460

Query  1363  IEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDI  1422
             IEQCLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDI
Sbjct  1461  IEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDI  1520

Query  1423  ATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddke  1482
             ATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKE
Sbjct  1521  ATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKE  1580

Query  1483  kskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTETQD  1542
             KSKK+TAE++ ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK E QD
Sbjct  1581  KSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQD  1640

Query  1543  ETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLD  1602
             ETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLD
Sbjct  1641  ETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLD  1700

Query  1603  KGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNH  1662
             KGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNH
Sbjct  1701  KGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNH  1760

Query  1663  FMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQ  1722
             FMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQ
Sbjct  1761  FMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQ  1820

Query  1723  MSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLS  1782
             MSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLS
Sbjct  1821  MSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLS  1880

Query  1783  REHEEITTSPKGGN  1796
             REHEEITTSPKGGN
Sbjct  1881  REHEEITTSPKGGN  1894


 Score =  181 bits (671),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 186/199 (94%), Positives = 192/199 (97%), Gaps = 0/199 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+HHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
            YESEETQTQMD GGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDN  180
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESS+HHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  PTETKTNFDEYESEEITND  199
             TE+KTNFDEYESEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

15) cagY in NC_017367


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1765 bits (6704),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1558/1800 (87%), Positives = 1650/1800 (92%), Gaps = 55/1800 (3%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDEYELEETQT  68
             ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KTNFDEYE EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTEAKTNF  188
             EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEADKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEA+KNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  549   LQSDILAKESLKAYKDCVSQAKTEAEKQECeklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKESLKAYKDCVSQA+TEAEK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E E++ CEKLLTPEA+KLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  669   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECekll  728
             +QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES++ Y DCVS+A+NE EK+EC    
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKEC----  854

Query  729   tpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDC  788
               E     E  KK  +   DC+  A+ + E++ C  L         +  AKES+KAY DC
Sbjct  855   --EKLLTPEAKKKLEQQVLDCLKNAKTDEERKKC--LKNLPKDLQSDILAKESLKAYKDC  910

Query  789   VSQakteaekke-ceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEA  847
             VSQA+TEAEKKE    L     K   EEAK SVKAYLDCVSQ                  
Sbjct  911   VSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ------------------  952

Query  848   KKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSRARNEKEK  905
                           AKTEAEKK C K L  +  +K+L  AK S+KAYKDCVSRARNEKEK
Sbjct  953   --------------AKTEAEKKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEK  997

Query  906   QECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakksl  965
             +ECEKLLTPEA+KLLEEAKKS+KAY DCVS+A+NE E++ECEKLLTPEA+KLLEEAKKS+
Sbjct  998   KECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSV  1057

Query  966   kaykDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQ  1025
             KAYKDCVSRARNEKEK+ECEKLLTPEA+KLLE+QALDCLKNAKTEAEKKRCVKDLPKDLQ
Sbjct  1058  KAYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQ  1117

Query  1026  KKVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQARNE  1085
             KKVLAKESV+ YLDCVS+A+NE EK+ECEKLLTPEA+KLLEEAK S+KAYKDC+S+ARNE
Sbjct  1118  KKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNE  1177

Query  1086  EERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTPEARKFL--A  1143
              E++ CEKLLTPEA+KLLE E KKSVKAYLDCVS+A+NE E++ECEKLLTPEARK+L  A
Sbjct  1178  KEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEA  1236

Query  1144  KQVL----SCLEKARNEEERKACLKNIPKDLQKNVL--AKESLKAYKDCLSQARNEEERR  1197
             K+ +     C+ +ARNE E+K C K +  +  +++L  AK S+KAY DC+SQA+NE ER+
Sbjct  1237  KKSVKAYKDCVSRARNEKEKKECEKLLTPE-ARKLLEEAKKSVKAYLDCVSQAKNEAERK  1295

Query  1198  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQK  1257
              CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQK
Sbjct  1296  ECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQK  1354

Query  1258  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1317
             DKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ
Sbjct  1355  DKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1414

Query  1318  NLYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1377
             NLYS+LIQEIQNKRAQ+KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA
Sbjct  1415  NLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1474

Query  1378  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1437
             LILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1475  LILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1534

Query  1438  SDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakvesN  1497
             SDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESN
Sbjct  1535  SDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESN  1594

Query  1498  KIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSD  1557
             KIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKK E QDETSPVKQAFIGKSD
Sbjct  1595  KIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSD  1654

Query  1558  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1617
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1655  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1714

Query  1618  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1677
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1715  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1774

Query  1678  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1737
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1775  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1834

Query  1738  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1835  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  184 bits (683),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 189/199 (95%), Positives = 192/199 (97%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YELEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
            YE EETQTQMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  YTEAKTNFDEYESEEITND  199
            YTEAKTNFDEYESEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

16) HPV225_0522 in NC_017355


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1722 bits (6538),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1551/1769 (88%), Positives = 1637/1769 (93%), Gaps = 22/1769 (1%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNFDEY SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GGNETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  188
             EETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DGEKSEEITNNSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             D   SEEITN+SNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKK LEQQ LDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  549   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQA+TEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E E++ CEKLLTPEA+KLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  669   QQALDCLKNAKTDEERKKCLKNLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekll  728
             +QALDCLKNAKT+ E+K+C+K+LPKDLQKKVLAKESV+ YLDCVS+A+NE EKKECEKLL
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLL  858

Query  729   tpeakklleeakeslkaYKDCVSRSRNEKEKQECeklltpeakklleeeakeSVKAYLDC  788
             TPEAKK LE+         DC+  ++ + E++ C  L         +  AKES+KAY DC
Sbjct  859   TPEAKKKLEQQVL------DCLKNAKTDEERKKC--LKNLPKDLQSDILAKESLKAYKDC  910

Query  789   VSQARTEAEKKECek-lltpeakkkleeakksvkaYLDCVSQakteaekkeceklltpea  847
             VSQARTEAEKKECEK L     K   EEAK SVKAYLDCVSQ       K     L    
Sbjct  911   VSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ-AKTEAEKKECEKLLTPE  969

Query  848   kklleeeakeSVKAYLDCVSRARNekekkeceklltpeakkkleeakksvkaYLDCVSQA  907
              + L EEAK SVKAY DCVSRARNEKEKKECEKLLTPEA+K LEEAKKSVKAYLDCVSQA
Sbjct  970   ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQA  1029

Query  908   RTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAKKLL  967
             + EAE+KECEKLLTPEARKLLE E KKSVKAY DCVSRARNEKEKKECEKLLTPEA+KLL
Sbjct  1030  KNEAERKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLL  1088

Query  968   EQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekl  1027
             E+QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+NE EKKECEKL
Sbjct  1089  ENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKL  1148

Query  1028  ltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLD  1087
             LTPEA+KLLEEAK S+KAYKDC+S+ARNE E+K CEKLLTPEARKLLE E KKSVKAYLD
Sbjct  1149  LTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLD  1207

Query  1088  CVSRARNEKEKQECEKLLTPEARKFL--AKQVL----SCLEKARNEEERKACLKNIPKDL  1141
             CVS+A+NE E++ECEKLLTPEARK+L  AK+ +     C+ +ARNE E+K C K +  + 
Sbjct  1208  CVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPE-  1266

Query  1142  QKNVL--AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1199
              +++L  AK S+KAY DC+SQA+NE ERK CEKLLTPEARKLLE E K S+KAY DC+S+
Sbjct  1267  ARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQ  1325

Query  1200  ARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1259
             ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEK
Sbjct  1326  ARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEK  1385

Query  1260  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1319
             LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLHQA
Sbjct  1386  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQA  1445

Query  1320  SECLDNLDDPTDQEAIEKCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1379
             SECLDNLDDPTDQEAIE+CLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAK
Sbjct  1446  SECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAK  1505

Query  1380  GYPLLPMDFKNGGDIATINATNVDTDKIASDNPIYASIEPDITKQYETEKTIkdknleak  1439
             GYPLLPMDFKNGGDIATINATNVD+DKIASDNPIYASIEPDITKQYETEKTIKDK+LEAK
Sbjct  1506  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAK  1565

Query  1440  lakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1499
             LAKALGG+KKDDDKEKSKK+TAE++ ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDE
Sbjct  1566  LAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDE  1625

Query  1500  NGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1559
             NGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV
Sbjct  1626  NGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1685

Query  1560  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1619
             AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA
Sbjct  1686  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1745

Query  1620  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1679
             GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY
Sbjct  1746  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1805

Query  1680  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1739
             ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK
Sbjct  1806  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1865

Query  1740  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1768
             SVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1866  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  168 bits (621),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 178/196 (91%), Positives = 183/196 (94%), Gaps = 0/196 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YKSEETQTQMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
            Y SEETQTQMD GGNETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  180
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  STETKTNFDGEKSEEI  196
             TE+KTNFD   SEE 
Sbjct  181  YTEAKTNFDEYESEET  196

17) HPIN_04260 in NC_017372


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1719 bits (6530),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1528/1805 (85%), Positives = 1615/1805 (90%), Gaps = 103/1805 (5%)

Query  9     ETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDEYELEETQT  68
             ETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KT+FDEYE EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQGNNGYQ  128
             Q+D GGNETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEE DQ NNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTETEINF  188
             EETQ+DLIDDETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTE+  NF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  248
             D   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCISKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDC+S+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  549   LQSDILAKESLKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  609   kneaekkeceklltpeakkkleeakksvkaYLDCASQARTEAEKKECEKLLTPEARKLLE  668
             K EAEKKECEKLLTPEA+K LEEAK S+KAY DC SQAR E E++ CEKLLTPEARKLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  669   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             +QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLDCVS+AK EAEKKECEKLL
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLL  858

Query  729   tPEARKLLEE-------------------------------AKESLKAYKDCVSRARNkk  757
             TPEA+K LE+                               AKESLKAYKDCVS+AR   
Sbjct  859   TPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEA  918

Query  758   ekkeceklltpeakklleeeakeSVKAYLDCVSQakneaekkeceklltpeakkkleeak  817
             EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAK EAEKKECEKLLTPEA+K LEEAK
Sbjct  919   EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAK  978

Query  818   ksvkaYLDCVSKARTEAEKKECEKLLTPEAKKLLEQQA------LDCLKNAKTEADKKRC  871
             KSVKAY DCVS+AR E EKKECEKLLTPEA+KLLE+        LDC+ +AK EA++K C
Sbjct  979   KSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKEC  1038

Query  872   VKDLPKDLQKKVL--AKESLKAYKDCVSRARNekekkeceklltpeakklleeakeslka  929
              K L  +  +K+L  AK S+KAYKDCVSRARNEKEKKECEKLLTPEA+KLLE+       
Sbjct  1039  EKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQAL----  1093

Query  930   YKDCVSQARNekekkecekLLTPE-AKKLLEQQA----LDCLKNAKTEAEKKRCVKDLPK  984
               DC+ +A+ E EKK C K L  +  KK+L +++    LDC+ +AK EAEKK C K L  
Sbjct  1094  --DCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLTP  1151

Query  985   DLQKKVL--AKESVKAYLDCVSKARNekekkeceklltpeakklleeakeslkaYKDCLS  1042
             +  +K+L  AK SVKAY DCVS+ARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+S
Sbjct  1152  E-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVS  1210

Query  1043  QARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARK  1102
             QA+NE ER+ CEKLLTPEARKLLE E KKSVKAY DCVSRARNEKEK+ECEKLLTPEARK
Sbjct  1211  QAKNEAERKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARK  1269

Query  1103  FL------AKQVLNCLEKAGNEEERKACLKNLPKDLQENVL--AKESLKAYKDCLSQARN  1154
             +L       K  L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARN
Sbjct  1270  LLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARN  1328

Query  1155  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAK  1214
             EEERRACEKLLTPEARK+LE               K R++K+K                 
Sbjct  1329  EEERRACEKLLTPEARKFLE---------------KQRQQKDK-----------------  1356

Query  1215  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1274
                    AIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1357  -------AIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1409

Query  1275  KRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDEQAIEQCLEGLS  1334
             KRKCQNLYS+LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTD++AIEQCLEGLS
Sbjct  1410  KRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1469

Query  1335  DSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1394
             DSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1470  DSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1529

Query  1395  ADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksatea  1454
             ADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+++E+
Sbjct  1530  ADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAET  1589

Query  1455  ktesNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAF  1514
             K+ESNKIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKK EKQDETSPVKQAF
Sbjct  1590  KAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAF  1649

Query  1515  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1574
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1650  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1709

Query  1575  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1634
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1710  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1769

Query  1635  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1694
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1770  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1829

Query  1695  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1754
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1830  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1889

Query  1755  PKGGN  1759
             PKGGN
Sbjct  1890  PKGGN  1894


 Score =  199 bits (741),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 175/199 (88%), Positives = 184/199 (93%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDE  60
            MNEENDKLETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TE+KT+FDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YELEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120
            YE EETQTQ+D GGNETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  DQGNNGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQ NNGYQEETQ+DLIDDETS+KTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  YTETEINFDGDKSEEITND  199
            YTE+  NFD   SEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

18) HPSAT_04140 in NC_017359


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1719 bits (6527),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1503/1798 (84%), Positives = 1584/1798 (89%), Gaps = 129/1798 (7%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDHHLDN TE+KTNFD   SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMD G+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  186
             EE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDHHLDN TE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  427   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  486
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  487   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  546
             SVKAYKDCVS+ARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  547   LQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  606
             LQSDILAKES+KAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  607   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEARKLLE  666
             KTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E E++ CEKLLTPEARKLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  667   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  726
             +QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+AK EAEK       
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEK-------  851

Query  727   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTE  786
                               K+C             EKLLTPEAKK LEQQ LDCLKNAKT+
Sbjct  852   ------------------KEC-------------EKLLTPEAKKKLEQQVLDCLKNAKTD  880

Query  787   AEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkeceklltPEARKLL-EEAK  845
              E+K+C+K+LPKDLQ  +LAKES+KAY DCVSQA+TEAEKKECEKLLTPEA+KLL EEAK
Sbjct  881   EERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAK  940

Query  846   ESLKAYKDCVSRARNekekkecekLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekke  905
             ES+KAY DCVS+A+ E EKKECEKLLTPEA+KLLE E KKSVKAY DCVS+A+ E EKKE
Sbjct  941   ESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKE  999

Query  906   ceklltPEARKFL------AKQALDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVK  957
             CEKLLTPEARK+L       K  LDC+ +AK EAE+K C K L  +  +K+L  AK SVK
Sbjct  1000  CEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVK  1058

Query  958   AYLDCVSRARNekekkecekLLTPEARKLLEE----------------------------  989
             AY DCVSRARNEKEKKECEKLLTPEARKLLE+                            
Sbjct  1059  AYKDCVSRARNEKEKKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQK  1118

Query  990   ---AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakte  1046
                AKES++ Y DC+S+A+NE E+K CEKLLTPEARKLLE E KKSVKAY DCVS+A+ E
Sbjct  1119  KVLAKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNE  1177

Query  1047  aekkeceklltPEARKFL------AKQALSCLEKARNEEERKAC---LKNIPKDL-----  1092
              EKKECEKLLTPEARK+L       K  L C+ +A+NE ERK C   L   ++ L     
Sbjct  1178  KEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAK  1237

Query  1093  -----------------------------QKNVL--AKESLKAYKDCLSQARNEEERKAC  1121
                                           +++L  AK S+KAY DC+SQA+NE ERK C
Sbjct  1238  KSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKEC  1297

Query  1122  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDK  1181
             EKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CEKLLTPEARKFL K+ QQKDK
Sbjct  1298  EKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLEKQRQQKDK  1356

Query  1182  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1241
             AIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL
Sbjct  1357  AIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1416

Query  1242  YSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALI  1301
             YS+LIQEIQNKR+Q+KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALI
Sbjct  1417  YSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALI  1476

Query  1302  LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1361
             LGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD
Sbjct  1477  LGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1536

Query  1362  NPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKI  1421
             NPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE++ ESNKI
Sbjct  1537  NPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKI  1596

Query  1422  DKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPT  1481
             DKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPT
Sbjct  1597  DKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPT  1656

Query  1482  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1541
             FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT
Sbjct  1657  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1716

Query  1542  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1601
             PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS
Sbjct  1717  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1776

Query  1602  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1661
             FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF
Sbjct  1777  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1836

Query  1662  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1719
             YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1837  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  168 bits (622),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 171/199 (86%), Positives = 179/199 (90%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDHHLDN TE+KTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
              SEETQTQMD G+NETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDN  178
            DQENNGYQEE QMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKE+SDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  179  STETKTNFDGEKSEEITND  197
             TE+KTNFD   SEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

19) HPPC18_02525 in NC_017742


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1710 bits (6495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1566/1771 (89%), Positives = 1652/1771 (94%), Gaps = 28/1771 (1%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNFD   SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  186
             EETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  187   DGEKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFVPLEDKSSRFS  246
             D   SEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  307   KAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             +AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  427   KNAKTEAERNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  486
             KNAKTEAE+N CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  487   SVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  546
             SVKAYKDCVS+ARNEKEKKECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  547   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  606
             LQSDILAKES+KAYKDCVSQA+TEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  607   kteaekkeceklltpeakkkleeakesvkaYLDCVSQakteaekkeceklltPEAKKLLE  666
             KTEAEKKECEKLLTPEA+K LEEAKES+KAY DC+SQA+ E E++ CEKLLTPEA+KLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  667   QQALDCLKNAKTEAERKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  726
             +QALDCLKNAKTEAE+KRCVKDLPKDLQKKVLAKESV+ YLDCVS+AK EAEKKECEKLL
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLL  858

Query  727   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQEV--KRSVKAYL  784
             TPEAKK LE+         DC+  A+ + E+K C K L  +    L+ ++  K S+KAY 
Sbjct  859   TPEAKKKLEQQVL------DCLKNAKTDEERKKCLKNLPKD----LQSDILAKESLKAYK  908

Query  785   DCVSQakteaekke-ceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTP  843
             DCVSQA+TEAEKKE    L     K L EEAKES+KAY DCVS+A+ E EK+ECEKLLTP
Sbjct  909   DCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTP  968

Query  844   EAKKLLEQEVKKSVKAYLDCVSQakteaekkacekLLTPEAKKLLEQEVKKSVKAYLDCV  903
             EA+KLLE E KKSVKAY DCVS+A+ E EKK CEKLLTPEA+KLLE E KKSVKAYLDCV
Sbjct  969   EARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCV  1026

Query  904   SQakteaekkaceklltpeakkkleeakksvkaYLDCVSRARNekekkecekLLTPEAKK  963
             SQAK EAE+K CEKLLTPEA+K LEEAKKSVKAY DCVSRARNEKEKKECEKLLTPEA+K
Sbjct  1027  SQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARK  1086

Query  964   LLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkece  1023
             LLE+QALDCLK+AKTEAEKKRCVKDLPKDLQKKVLAKESV+ YLDCVS+A+NE EKKECE
Sbjct  1087  LLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECE  1146

Query  1024  klltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAY  1083
             KLLTPEA+KLLEEAK S+KAYKDC+S+ARNE E+K CEKLLTPEARKLLE E KKSVKAY
Sbjct  1147  KLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAY  1205

Query  1084  LDCVSRARNekekkecekLLTPEARKFL--AKQVL----SCLEKARNEEERKACLKNIPK  1137
             LDCVS+A+NE E+KECEKLLTPEARK+L  AK+ +     C+ +ARNE E+K C K +  
Sbjct  1206  LDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTP  1265

Query  1138  DLQKNVL--AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCV  1195
             +  +++L  AK S+KAY DC+SQA+NE ERK CEKLLTPEARKLLE E K S+KAY DC+
Sbjct  1266  E-ARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCL  1323

Query  1196  SRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDE  1255
             S+ARNE E++ CEKLLTPEARKFL K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDE
Sbjct  1324  SQARNEEERRACEKLLTPEARKFLEKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDE  1383

Query  1256  EKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLH  1315
             EKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSKTERLH
Sbjct  1384  EKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLH  1443

Query  1316  QASECLDNLDDPTDQEAIEKCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMA  1375
             QASECLDNLDDPTDQEAIE+CLEGLSDSERALILGIKRQADEVD IYSDLR+RKTFDNMA
Sbjct  1444  QASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMA  1503

Query  1376  AKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdksle  1435
             AKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLE
Sbjct  1504  AKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKSLE  1563

Query  1436  aklakalggdkkdddkekskkPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGEFV  1495
             AKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSG+FV
Sbjct  1564  AKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFV  1623

Query  1496  DENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSG  1555
             DENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSG
Sbjct  1624  DENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSG  1683

Query  1556  VVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQ  1615
             VVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQ
Sbjct  1684  VVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQ  1743

Query  1616  AAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEF  1675
             AAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEF
Sbjct  1744  AAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEF  1803

Query  1676  NYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKIT  1735
             NYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKIT
Sbjct  1804  NYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKIT  1863

Query  1736  NKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1766
             NKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1864  NKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  170 bits (628),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 175/196 (90%), Positives = 179/196 (92%), Gaps = 2/196 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN TE+KTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
              SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  178
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESKESSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  179  STETKTNFDGEKSEEI  194
             TE+KTNFD   SEE 
Sbjct  181  YTEAKTNFDEYESEET  196

20) K751_03260 in NC_021218


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1645 bits (6246),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1548/1836 (85%), Positives = 1631/1836 (89%), Gaps = 127/1836 (6%)

Query  9     ETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKESSDHHLDN TE+KTNFDEYESEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTEAKTNF  188
             EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN TEAKTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  429   KNAKTEDEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  488
             KNAKTE EKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  489   SVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLK+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  549   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+ E E++ CEKLLTPEA+KLLE
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLE  798

Query  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             +QALDCLK+AKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLDCVS+AK EAEKKECEKLL
Sbjct  799   NQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLL  858

Query  729   tPEARKLLEE-------------------------------AKESLKAYKDCVSRARNek  757
             TPEA+K LE+                               AKESLKAYKDCVS+AR E 
Sbjct  859   TPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEA  918

Query  758   ekkeceklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeak  817
             EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK
Sbjct  919   EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAK  978

Query  818   ksvkaYLDCVSQakteaekkeceklltPEAKNLLEQQA------LDCLKNAKTESEKKRC  871
             KSVKAY DCVS+A+ E EKKECEKLLTPEA++LLE+        LDC+ +AK E+E+K C
Sbjct  979   KSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKEC  1038

Query  872   VKDLPKDLQKKVL--AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslka  929
              K L  +  +K+L  AK SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLE+       
Sbjct  1039  EKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLENQAL----  1093

Query  930   YKDCVSQAKTEDEKKECeklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLT  989
               DC+ +AKTE EKK C     P   +    AKES++ Y DCVS+A+NE EK+ECEKLLT
Sbjct  1094  --DCLKNAKTEAEKKRC-VKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKLLT  1150

Query  990   PEAKNLLEQQALDCLKNAKTESEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNeke  1049
             PEA++LLE+                               AK SVKAY DCVSRARNEKE
Sbjct  1151  PEARKLLEE-------------------------------AKKSVKAYKDCVSRARNEKE  1179

Query  1050  kkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKK  1109
             KKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ CEKLLTPEA+KLLE E KK
Sbjct  1180  KKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLE-EAKK  1238

Query  1110  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFL------AKQVLSCLEKARNEEERKACL  1163
             SVKAY DCVSRARNEKEK+ECEKLLTPEARK+L       K  L C+ +A+NE ERK C 
Sbjct  1239  SVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECE  1298

Query  1164  KNIPKDLQKNVL--AKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKA  1221
             K +  +  +++L  AKESLKAYKDCLSQARNEEERRACEKLLTPEARK+LE         
Sbjct  1299  KLLTPE-ARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFLE---------  1348

Query  1222  YLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLD  1281
                   + R++K+K                        AIKDCLKNA+PNDRAAIMKCLD
Sbjct  1349  ------KQRQQKDK------------------------AIKDCLKNANPNDRAAIMKCLD  1378

Query  1282  GLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSK  1341
             GLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS+LIQEIQNKR+Q+KQNQLSK
Sbjct  1379  GLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSGLIQEIQNKRAQNKQNQLSK  1438

Query  1342  TERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKT  1401
             TERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVD IYSDLR+RKT
Sbjct  1439  TERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKT  1498

Query  1402  FDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIk  1461
             FDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIK
Sbjct  1499  FDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIK  1558

Query  1462  dknleaklakalggnkkdddkekskkstteaktesNKIDKDVAETAKNISEIALKNKKEK  1521
             DK+LEAKLAKALGG+KKDDDKEKSKK+T+E+K+ESNKIDKDVAETAKNISEIALKNKKEK
Sbjct  1559  DKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEK  1618

Query  1522  SGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLT  1581
             SG+FVDENGNPIDDKKK E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLT
Sbjct  1619  SGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLT  1678

Query  1582  GIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIP  1641
             GIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIP
Sbjct  1679  GIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIP  1738

Query  1642  LANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSE  1701
             LANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSE
Sbjct  1739  LANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSE  1798

Query  1702  RTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVY  1761
             RTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVY
Sbjct  1799  RTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVY  1858

Query  1762  DVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             DVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1859  DVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894


 Score =  180 bits (667),  Expect = 5e-46, Method: Compositional matrix adjust.
 Identities = 188/199 (95%), Positives = 192/199 (97%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+TEANHFEDSSKESKESSDHHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
            YESEETQTQMD GGNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181  PTEAKTNFDEYESEEITND  199
             TEAKTNFDEYESEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

21) HPSH417_02515 in NC_017739


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1644 bits (6241),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1477/1807 (82%), Positives = 1571/1807 (87%), Gaps = 140/1807 (7%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDHHLDN TE+KTNFDEY SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDEYESEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE DQENNGYQ
Sbjct  199   QMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEYDQENNGYQ  258

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKTNF  186
             EETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDHHLDNYTE+KTNF
Sbjct  259   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNF  318

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D   SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS
Sbjct  319   DEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFIPLEDKSSRFS  378

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  379   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  438

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  439   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  498

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  499   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  558

Query  427   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  486
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  559   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  618

Query  487   SVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKD  546
             SVKAYKDCVS+ARNE E+K CEKLLTPEAKK LE+Q LDCLKNAKT+ E+K+C+K+LPKD
Sbjct  619   SVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKD  678

Query  547   LQSDILAKESVKAYRDCV---------------------------------------SQA  567
             LQSDILAKES+KAY+DCV                                       SQA
Sbjct  679   LQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  738

Query  568   RTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQAktetekkeceklltPEARKKL  627
             +TEAEKKECEKLLTPEA+KLLEE    S+KAY DC+SQA+ E E++ CEKLLTPEARK L
Sbjct  739   KTEAEKKECEKLLTPEARKLLEEAKE-SLKAYKDCLSQARNEEERRACEKLLTPEARKLL  797

Query  628   EE-------------------------------AKKSVKAYLDCVSQAktetekkecekl  656
             E+                               AK SV+ YLDCVS+AK E+EKKECEKL
Sbjct  798   ENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAEKKECEKL  857

Query  657   ltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNe  716
             LTPEAKK LEQQ LDCLKNAKT+ E+K+C+K+LPKDLQ  +LAKESLKA           
Sbjct  858   LTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILAKESLKA-----------  906

Query  717   kekkeceklltpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpeakklleeea  776
                                        YKDCVSQARTEAEKKECEKLLTPEAKKLLEEEA
Sbjct  907   ---------------------------YKDCVSQARTEAEKKECEKLLTPEAKKLLEEEA  939

Query  777   keSVKAYLDCISQAktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekke  836
             KESVKAYLDC+SQAKTE+EKKECEKLLTPEARK LEEAKKSVKAY DCVS+A+ E EKKE
Sbjct  940   KESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKE  999

Query  837   ceklltPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESLK  888
             CEKLLTPEA+KLLE+        LDC+ +AK EAE+K C K L  +  +K+L  AK S+K
Sbjct  1000  CEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVK  1058

Query  889   AYKDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSQARNEEERKACEKLL  948
             AYKDCVSRARNEKEKKECEKLLTPEA+KLLE+         DC+ +A+ E E+K C K L
Sbjct  1059  AYKDCVSRARNEKEKKECEKLLTPEARKLLENQAL------DCLKNAKTEAEKKRCVKDL  1112

Query  949   TPEARKKLEEAKKSVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCL  1008
               + +KK+  AK SV+ YLDCVS+A+NE EKKECEKLLTPEA+KLLEEAK S+KAYKDC+
Sbjct  1113  PKDLQKKVL-AKESVRVYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKKSVKAYKDCV  1171

Query  1009  SQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAR  1068
             S+ARNE E+K CEKLLTPEARKLLE E KKSVKAYLDCVS+A+NE E++ECEKLLTPEAR
Sbjct  1172  SRARNEKEKKECEKLLTPEARKLLE-EAKKSVKAYLDCVSQAKNEAERKECEKLLTPEAR  1230

Query  1069  KFL--AKQAL----SCLEKARNEEERKAC---LKNIPKDLQKDVLAKESLKAYKDCLSQA  1119
             K+L  AK+++     C+ +ARNE E+K C   L   ++ L  +  AK S+KAY DC+SQA
Sbjct  1231  KLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEE--AKKSVKAYLDCVSQA  1288

Query  1120  RNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL  1179
             +NE ERK CEKLLTPEARKLLE E K S+KAY DC+S+ARNE E++ CEKLLTPEARKFL
Sbjct  1289  KNEAERKECEKLLTPEARKLLE-EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKFL  1347

Query  1180  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1239
              K+ QQKDKAIKDCLKNA+PNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD
Sbjct  1348  EKQRQQKDKAIKDCLKNANPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1407

Query  1240  EEKRKCQNLYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG  1299
             EEKRKCQNLYS+LIQEIQNKRAQ+KQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG
Sbjct  1408  EEKRKCQNLYSGLIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG  1467

Query  1300  LSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1359
             LSDSERALILGIKRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATN
Sbjct  1468  LSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1527

Query  1360  VDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTA  1419
             VDADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TA
Sbjct  1528  VDADKIASDNPIYASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTA  1587

Query  1420  EARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQ  1479
             E++ ESNKIDKDVAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQ
Sbjct  1588  ETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQ  1647

Query  1480  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1539
             AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG
Sbjct  1648  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1707

Query  1540  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1599
             NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF
Sbjct  1708  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1767

Query  1600  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1659
             AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG
Sbjct  1768  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1827

Query  1660  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1719
             QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT
Sbjct  1828  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1887

Query  1720  TSPKGGN  1726
             TSPKGGN
Sbjct  1888  TSPKGGN  1894


 Score =  183 bits (677),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 176/199 (89%), Positives = 181/199 (91%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDHHLDN TE+KTNFDE
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            Y SEETQTQMD GGNETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEE 
Sbjct  61   YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
            DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEE+  ANHFEDSSKESK SSDHHLDN
Sbjct  121  DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  179  YTETKTNFDGEKSEEITND  197
            YTE+KTNFD   SEE   +
Sbjct  181  YTEAKTNFDEYESEETQTQ  199

22) C694_02720 in NC_018939


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1591 bits (6039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1618/1975 (82%), Positives = 1722/1975 (88%), Gaps = 129/1975 (6%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDHHLDN TE++T+FD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
             DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
              TE++TNFD   SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
             EE QE NEE DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   KESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE++TNFD   SEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  600
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNek  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+S+ARNE 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkecekLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLD  840
             E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   CVSQakteaekkeceklltPEARKLLEE-------------------------------A  869
             CVS+AK EAEKKECEKLLTPEA+K LE+                               A
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  870   KKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDCVSQakneaekk  929
             K S+KAY DCVSQA+TEAEKKECEKLLTPEA+KLLEE AKESVKAYLDCVSQAK EAEKK
Sbjct  901   KESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  960

Query  930   eceklltleskkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQA----  985
             ECEKLLT E++K LEEAKKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+      
Sbjct  961   ECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1020

Query  986   --LDCLKNAKTEADKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSKARNekekkecekl  1041
               LDC+ +AK EA++K C K L  +  +K+L  AK S+KAYKDCVS+ARNEKEKKECEKL
Sbjct  1021  AYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKL  1079

Query  1042  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPE-ARKLLEEAKESVKAYKD  1100
             LTPEA+KLLE+        LDC+ +AKTEAEKK C K L  +  +K+L  AKESV+ Y D
Sbjct  1080  LTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVRVYLD  1131

Query  1101  CVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLA  1160
             CVSKA+NE EKKECEKLLTPEA+KLLE+                               A
Sbjct  1132  CVSKAKNEAEKKECEKLLTPEARKLLEE-------------------------------A  1160

Query  1161  KESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRA  1220
             K SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ 
Sbjct  1161  KKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKE  1220

Query  1221  CEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEARKFL------AK  1274
             CEKLLTPEARKLLE E KKS+KAY DCVSRARNEKEKKECEKLLTPEARK+L       K
Sbjct  1221  CEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1279

Query  1275  QVLNCLEKAGNEEERKACLKNLPKDLQENIL--AKESLKAYKDCLSQARNEEERRACEKL  1332
               L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARNEEERRACEKL
Sbjct  1280  AYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARNEEERRACEKL  1338

Query  1333  LTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIK  1392
             LTPEARK+LE++ ++  KA  DC+  A              P+ R            AI 
Sbjct  1339  LTPEARKFLEKQRQQKDKAIKDCLKNA-------------NPNDR-----------AAIM  1374

Query  1393  DCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSD  1452
              CL     +++   +K L+   +   L  L+ AR            TDEEKRKCQNLYS+
Sbjct  1375  KCLDGLSDEEK---LKYLQEAREKAVLDCLKTAR------------TDEEKRKCQNLYSG  1419

Query  1453  LIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1512
             LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI
Sbjct  1420  LIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1479

Query  1513  KRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1572
             KRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI
Sbjct  1480  KRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1539

Query  1573  YASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennkIDKD  1632
             YASIEPDI+KQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+KAE+NKIDKD
Sbjct  1540  YASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKD  1599

Query  1633  VAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVL  1692
             VAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVL
Sbjct  1600  VAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVL  1659

Query  1693  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1752
             AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM
Sbjct  1660  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1719

Query  1753  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1812
             TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ
Sbjct  1720  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1779

Query  1813  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1872
             TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN
Sbjct  1780  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1839

Query  1873  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1840  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

23) HP0527 in NC_000915


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1591 bits (6039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1618/1975 (82%), Positives = 1722/1975 (88%), Gaps = 129/1975 (6%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDHHLDN TE++T+FD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
             DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
              TE++TNFD   SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
             EE QE NEE DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   KESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE++TNFD   SEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  600
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNek  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+S+ARNE 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkecekLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLD  840
             E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   CVSQakteaekkeceklltPEARKLLEE-------------------------------A  869
             CVS+AK EAEKKECEKLLTPEA+K LE+                               A
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  870   KKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDCVSQakneaekk  929
             K S+KAY DCVSQA+TEAEKKECEKLLTPEA+KLLEE AKESVKAYLDCVSQAK EAEKK
Sbjct  901   KESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  960

Query  930   eceklltleskkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQA----  985
             ECEKLLT E++K LEEAKKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+      
Sbjct  961   ECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1020

Query  986   --LDCLKNAKTEADKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSKARNekekkecekl  1041
               LDC+ +AK EA++K C K L  +  +K+L  AK S+KAYKDCVS+ARNEKEKKECEKL
Sbjct  1021  AYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKL  1079

Query  1042  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPE-ARKLLEEAKESVKAYKD  1100
             LTPEA+KLLE+        LDC+ +AKTEAEKK C K L  +  +K+L  AKESV+ Y D
Sbjct  1080  LTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVRVYLD  1131

Query  1101  CVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLA  1160
             CVSKA+NE EKKECEKLLTPEA+KLLE+                               A
Sbjct  1132  CVSKAKNEAEKKECEKLLTPEARKLLEE-------------------------------A  1160

Query  1161  KESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRA  1220
             K SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ 
Sbjct  1161  KKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKE  1220

Query  1221  CEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEARKFL------AK  1274
             CEKLLTPEARKLLE E KKS+KAY DCVSRARNEKEKKECEKLLTPEARK+L       K
Sbjct  1221  CEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1279

Query  1275  QVLNCLEKAGNEEERKACLKNLPKDLQENIL--AKESLKAYKDCLSQARNEEERRACEKL  1332
               L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARNEEERRACEKL
Sbjct  1280  AYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARNEEERRACEKL  1338

Query  1333  LTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIK  1392
             LTPEARK+LE++ ++  KA  DC+  A              P+ R            AI 
Sbjct  1339  LTPEARKFLEKQRQQKDKAIKDCLKNA-------------NPNDR-----------AAIM  1374

Query  1393  DCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSD  1452
              CL     +++   +K L+   +   L  L+ AR            TDEEKRKCQNLYS+
Sbjct  1375  KCLDGLSDEEK---LKYLQEAREKAVLDCLKTAR------------TDEEKRKCQNLYSG  1419

Query  1453  LIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1512
             LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI
Sbjct  1420  LIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1479

Query  1513  KRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1572
             KRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI
Sbjct  1480  KRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1539

Query  1573  YASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennkIDKD  1632
             YASIEPDI+KQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+KAE+NKIDKD
Sbjct  1540  YASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKD  1599

Query  1633  VAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVL  1692
             VAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVL
Sbjct  1600  VAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVL  1659

Query  1693  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1752
             AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM
Sbjct  1660  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1719

Query  1753  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1812
             TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ
Sbjct  1720  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1779

Query  1813  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1872
             TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN
Sbjct  1780  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1839

Query  1873  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1840  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

24) C695_02720 in NC_018937


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1591 bits (6039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1618/1975 (82%), Positives = 1722/1975 (88%), Gaps = 129/1975 (6%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDHHLDN TE++T+FD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
             DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
              TE++TNFD   SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
             EE QE NEE DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   KESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE++TNFD   SEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  600
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNek  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+S+ARNE 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkecekLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLD  840
             E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   CVSQakteaekkeceklltPEARKLLEE-------------------------------A  869
             CVS+AK EAEKKECEKLLTPEA+K LE+                               A
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  870   KKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDCVSQakneaekk  929
             K S+KAY DCVSQA+TEAEKKECEKLLTPEA+KLLEE AKESVKAYLDCVSQAK EAEKK
Sbjct  901   KESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  960

Query  930   eceklltleskkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQA----  985
             ECEKLLT E++K LEEAKKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+      
Sbjct  961   ECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1020

Query  986   --LDCLKNAKTEADKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSKARNekekkecekl  1041
               LDC+ +AK EA++K C K L  +  +K+L  AK S+KAYKDCVS+ARNEKEKKECEKL
Sbjct  1021  AYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKL  1079

Query  1042  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPE-ARKLLEEAKESVKAYKD  1100
             LTPEA+KLLE+        LDC+ +AKTEAEKK C K L  +  +K+L  AKESV+ Y D
Sbjct  1080  LTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVRVYLD  1131

Query  1101  CVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLA  1160
             CVSKA+NE EKKECEKLLTPEA+KLLE+                               A
Sbjct  1132  CVSKAKNEAEKKECEKLLTPEARKLLEE-------------------------------A  1160

Query  1161  KESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRA  1220
             K SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ 
Sbjct  1161  KKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKE  1220

Query  1221  CEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEARKFL------AK  1274
             CEKLLTPEARKLLE E KKS+KAY DCVSRARNEKEKKECEKLLTPEARK+L       K
Sbjct  1221  CEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1279

Query  1275  QVLNCLEKAGNEEERKACLKNLPKDLQENIL--AKESLKAYKDCLSQARNEEERRACEKL  1332
               L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARNEEERRACEKL
Sbjct  1280  AYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARNEEERRACEKL  1338

Query  1333  LTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIK  1392
             LTPEARK+LE++ ++  KA  DC+  A              P+ R            AI 
Sbjct  1339  LTPEARKFLEKQRQQKDKAIKDCLKNA-------------NPNDR-----------AAIM  1374

Query  1393  DCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSD  1452
              CL     +++   +K L+   +   L  L+ AR            TDEEKRKCQNLYS+
Sbjct  1375  KCLDGLSDEEK---LKYLQEAREKAVLDCLKTAR------------TDEEKRKCQNLYSG  1419

Query  1453  LIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1512
             LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI
Sbjct  1420  LIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1479

Query  1513  KRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1572
             KRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI
Sbjct  1480  KRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1539

Query  1573  YASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennkIDKD  1632
             YASIEPDI+KQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+KAE+NKIDKD
Sbjct  1540  YASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKD  1599

Query  1633  VAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVL  1692
             VAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVL
Sbjct  1600  VAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVL  1659

Query  1693  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1752
             AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM
Sbjct  1660  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1719

Query  1753  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1812
             TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ
Sbjct  1720  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1779

Query  1813  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1872
             TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN
Sbjct  1780  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1839

Query  1873  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1840  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894

25) C730_02720 in NC_018938


> AB120421|7|G7|46091473|BAD13915.1|Helicobacter_pylori_F80|-|7386..13070|HP0527|-|cag 
pathogenicity island protein
Length=1894

 Score = 1591 bits (6039),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1618/1975 (82%), Positives = 1722/1975 (88%), Gaps = 129/1975 (6%)

Query  1     MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
             MNEENDKLETSKK+QQ+SPQDLSNEEATEANHFE+  KESKESSDHHLDN TE++T+FD 
Sbjct  1     MNEENDKLETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDNYTEAKTNFDE  60

Query  61    DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
               SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEE 
Sbjct  61    YESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNEEY  120

Query  121   dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
             DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KESKESSDHHLDN
Sbjct  121   DQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESKESSDHHLDN  180

Query  181   PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
              TE++TNFD   SEETQTQMD  GNETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181   YTEAKTNFDEYESEETQTQMDFGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241   eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
             EE QE NEE DQENN YQEETQ DLIDDETSKKTQQHSPQDLSNEEATEANHFE+  KES
Sbjct  241   EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKES  300

Query  301   KESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFS  360
             KESSDHHLDN TE++TNFD   SEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS
Sbjct  301   KESSDHHLDNYTEAKTNFDEYESEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFS  360

Query  361   RSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420
             RSIFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN
Sbjct  361   RSIFHYFIPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPN  420

Query  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKN  480
             RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN
Sbjct  421   RTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKN  480

Query  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrek  540
             AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK
Sbjct  481   AKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREK  540

Query  541   frkelelqkelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERN  600
             FRKEL LQKELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERN
Sbjct  541   FRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERN  600

Query  601   ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLK  660
             ECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLK
Sbjct  601   ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQQVLDCLK  660

Query  661   NAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakkll  720
             NAKTDEERKKCLK+LPKDLQSDILAKESLKAYKDCVSQA+TEAEKKECEKLLTPEAKKLL
Sbjct  661   NAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLL  720

Query  721   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNek  780
             EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DC+S+ARNE 
Sbjct  721   EEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEE  780

Query  781   ekkecekLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLD  840
             E++ CEKLLTPEA+KLLE+QALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLD
Sbjct  781   ERRACEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLD  840

Query  841   CVSQakteaekkeceklltPEARKLLEE-------------------------------A  869
             CVS+AK EAEKKECEKLLTPEA+K LE+                               A
Sbjct  841   CVSKAKNEAEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKNLPKDLQSDILA  900

Query  870   KKSVKAYLDCVSQakteaekkeceklltPearklleexakeSVKAYLDCVSQakneaekk  929
             K S+KAY DCVSQA+TEAEKKECEKLLTPEA+KLLEE AKESVKAYLDCVSQAK EAEKK
Sbjct  901   KESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  960

Query  930   eceklltleskkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQA----  985
             ECEKLLT E++K LEEAKKSVKAY DCVS+A+ E EKKECEKLLTPEA+KLLE+      
Sbjct  961   ECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1020

Query  986   --LDCLKNAKTEADKKRCVKDLPKDLQKKVL--AKESLKAYKDCVSKARNekekkecekl  1041
               LDC+ +AK EA++K C K L  +  +K+L  AK S+KAYKDCVS+ARNEKEKKECEKL
Sbjct  1021  AYLDCVSQAKNEAERKECEKLLTPE-ARKLLEEAKKSVKAYKDCVSRARNEKEKKECEKL  1079

Query  1042  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPE-ARKLLEEAKESVKAYKD  1100
             LTPEA+KLLE+        LDC+ +AKTEAEKK C K L  +  +K+L  AKESV+ Y D
Sbjct  1080  LTPEARKLLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESVRVYLD  1131

Query  1101  CVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLA  1160
             CVSKA+NE EKKECEKLLTPEA+KLLE+                               A
Sbjct  1132  CVSKAKNEAEKKECEKLLTPEARKLLEE-------------------------------A  1160

Query  1161  KESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRA  1220
             K SVKAY DCVSRARNEKEKKECEKLLTPEA+KLLEEAK S+KAY DC+SQA+NE ER+ 
Sbjct  1161  KKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKNEAERKE  1220

Query  1221  CEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEARKFL------AK  1274
             CEKLLTPEARKLLE E KKS+KAY DCVSRARNEKEKKECEKLLTPEARK+L       K
Sbjct  1221  CEKLLTPEARKLLE-EAKKSVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEAKKSVK  1279

Query  1275  QVLNCLEKAGNEEERKACLKNLPKDLQENIL--AKESLKAYKDCLSQARNEEERRACEKL  1332
               L+C+ +A NE ERK C K L  + + ++L  AKESLKAYKDCLSQARNEEERRACEKL
Sbjct  1280  AYLDCVSQAKNEAERKECEKLLTPEAR-KLLEEAKESLKAYKDCLSQARNEEERRACEKL  1338

Query  1333  LTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIK  1392
             LTPEARK+LE++ ++  KA  DC+  A              P+ R            AI 
Sbjct  1339  LTPEARKFLEKQRQQKDKAIKDCLKNA-------------NPNDR-----------AAIM  1374

Query  1393  DCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSD  1452
              CL     +++   +K L+   +   L  L+ AR            TDEEKRKCQNLYS+
Sbjct  1375  KCLDGLSDEEK---LKYLQEAREKAVLDCLKTAR------------TDEEKRKCQNLYSG  1419

Query  1453  LIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1512
             LIQEIQNKR+QNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI
Sbjct  1420  LIQEIQNKRAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGI  1479

Query  1513  KRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1572
             KRQADEVD IYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI
Sbjct  1480  KRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPI  1539

Query  1573  YASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennkIDKD  1632
             YASIEPDI+KQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+KAE+NKIDKD
Sbjct  1540  YASIEPDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKSKKPTAETKAESNKIDKD  1599

Query  1633  VAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVL  1692
             VAETAKNISEIALKNKKEKSG+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVL
Sbjct  1600  VAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDPTFVL  1659

Query  1693  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1752
             AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM
Sbjct  1660  AQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIM  1719

Query  1753  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1812
             TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ
Sbjct  1720  TRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQ  1779

Query  1813  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1872
             TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN
Sbjct  1780  TAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKN  1839

Query  1873  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1840  EGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1894