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PAthogenisity Island DataBase (PAI DB)

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Homologs of ccrB3 gene of AB047088

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ccrB
( YP_008167247.1 )

cassette chromosome recombinase B

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

2) ccrB
( YP_005743456.1 )

cassette chromosome recombinase B

NC_017341
(Staphylococcus aureus JKD6008)

0.0

3) dnaC
( YP_005751353.1 )

Cassette chromosome recombinase B3

NC_017347
(Staphylococcus aureus T0131)

0.0

4) ccrB
( YP_005730115.1 )

site-specific recombinase CcrB

NC_017331
(Staphylococcus aureus TW20)

0.0

5) ccrB3
( YP_005754051.1 )

site-specific recombinase CcrB3

NC_017349
(Staphylococcus aureus LGA251)

0.0

6) BN843_700
( YP_007867149.1 )

Cassette chromosome recombinase B

NC_021059
(Staphylococcus aureus M1)

0.0

7) ccrB
( YP_005746510.1 )

site-specific recombinase

NC_017342
(Staphylococcus aureus TCH60)

0.0

8) MS7_0069
( YP_005756536.1 )

resolvase, N terminal domain protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

9) SAKOR_00047
( YP_008490231.1 )

Site-specific recombinase

NC_022226
(Staphylococcus aureus CN1)

0.0

10) ccrB
( YP_492757.1 )

cassette chromosome recombinase B

NC_007793
(Staphylococcus aureus FPR3757)

0.0

11) ccrB
( YP_006236413.1 )

site-specific recombinase

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

12) ccrB
( YP_005738212.1 )

cassette chromosome recombinase B

NC_017338
(Staphylococcus aureus JKD6159)

0.0

13) SAMSHR1132_00400
( YP_005324563.1 )

site-specific recombinase

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

14) ccrB
( YP_001573963.1 )

cassette chromosome recombinase B

NC_010079
(Staphylococcus aureus TCH1516)

0.0

15) ccrB
( YP_005740811.1 )

Cassette chromosome recombinase B

NC_017340
(Staphylococcus aureus 04-02981)

0.0

16) SaurJH1_0049
( YP_001315202.1 )

resolvase domain-containing protein

NC_009632
(Staphylococcus aureus JH1)

0.0

17) SaurJH9_0048
( YP_001245436.1 )

resolvase

NC_009487
(Staphylococcus aureus JH9)

0.0

18) ccrB
( YP_039530.1 )

site-specific recombinase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

19) ccrB
( YP_001440650.1 )

cassette chromosome recombinase B

NC_009782
(Staphylococcus aureus Mu3)

0.0

20) ccrB
( NP_370585.1 )

cassette chromosome recombinase B

NC_002758
(Staphylococcus aureus Mu50)

0.0

21) ccrB
( NP_373297.1 )

cassette chromosome recombinase B

NC_002745
(Staphylococcus aureus N315)

0.0

22) SERP2499
( YP_190041.1 )

cassette chromosome recombinase B

NC_002976
(Staphylococcus epidermidis RP62A)

0.0

23) ccrB
( YP_008586687.1 )

cassette chromosome recombinase B

NC_022443
(Staphylococcus aureus SA40)

0.0

24) ccrB
( NP_644853.1 )

cassette chromosome recombinase B

NC_003923
(Staphylococcus aureus MW2)

0.0

25) SE0036
( NP_763591.1 )

cassette chromosome recombinase B

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

26) CA347_58
( YP_008126942.1 )

ogr/Delta-like zinc finger family protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

27) SSP0035
( YP_300125.1 )

cassette chromosome recombinase B

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

0.0

28) ccrB
( YP_042165.1 )

site-specific recombinase

NC_002953
(Staphylococcus aureus MSSA476)

0.0

29) BN843_340
( YP_007867113.1 )

Cassette chromosome recombinase B

NC_021059
(Staphylococcus aureus M1)

0.0

30) SE0056
( NP_763611.1 )

cassette chromosome recombinase B

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

31) Lp16_0045
( YP_008119898.1 )

cassette chromosome recombinase B

NC_021514
(Lactobacillus plantarum 16)

1e-93

32) ccrB5
( YP_006990890.2 )

resolvase, N terminal domain protein

NC_019425
(Carnobacterium maltaromaticum LMA28)

3e-87

33) BACI_c54540
( YP_003795137.1 )

DNA integration/recombination/invertion protein

NC_014335
(Bacillus cereus CI)

4e-84

34) BATR1942_18125
( YP_003975473.1 )

resolvase domain-containing protein

NC_014639
(Bacillus atrophaeus 1942)

2e-81

35) Bsph_4747
( YP_001700321.1 )

DNA recombinase

NC_010382
(Lysinibacillus sphaericus C3-41)

4e-79

36) BLi04323
( YP_006715586.1 )

phage resolvase

NC_006322
(Bacillus licheniformis DSM 13)

2e-65

37) spoIVCA
( YP_081392.1 )

site-specific DNA recombinase

NC_006270
(Bacillus licheniformis DSM 13)

2e-65

• Sequence Alignments

1) ccrB in NC_021670


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  859 bits (3254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/542 (99%), Positives = 541/542 (99%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNN PLDEVLLSTSSLFLPQTLFL
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

2) ccrB in NC_017341


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  859 bits (3254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/542 (99%), Positives = 541/542 (99%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNN PLDEVLLSTSSLFLPQTLFL
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

3) dnaC in NC_017347


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  859 bits (3254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/542 (99%), Positives = 541/542 (99%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNN PLDEVLLSTSSLFLPQTLFL
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

4) ccrB in NC_017331


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  859 bits (3254),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/542 (99%), Positives = 541/542 (99%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNN PLDEVLLSTSSLFLPQTLFL
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

5) ccrB3 in NC_017349


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/542 (93%), Positives = 531/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCNFNNFAVVDVYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTE+QSTEGYSIDGQINQIREYC+FNNF VVDVYADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRLLKDANEGQIDCVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQRLLKDANEGQID VMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYITKKGKPFSISSITYILSNPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGY+TKKGKPFSI+S+TYILSNPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIADGKHSPIISQDLWDKVQARKQQVSQKPQVHGKGTNLLTGIV  300
            YKDWNEKRRKGLNDKPIIA+GKHSPII QDLWDKVQ RK+QVSQKPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSIRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANS+RADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  REIVKSDTviqqvvervnqenqvdvAALNHDIAYKQQQFDEVNAKIKNLVQTIDDNPDLT  420
             EIVKSD VI+QV+ERVNQEN+VD++ALNHDIAYKQQQ+DEV++K+ NLV+TI+DNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SAIKPTIHQYEAQLNDITNQMNQLKHQQNQEKPSYDSKQIAVLLQRIFQNITSMDKTQLK  480
            SA+K+TIHQYE+QLNDITNQMNQLK+QQNQEK SYD+KQIA LLQRIFQNI SMDK+QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGDHKKQFYVTLKLNNEIIKQLFNNTALDEVLLSTSSLFLPQTLYF  540
            ALYLTVIDRIDIRKDG+HKKQFYVTLKLNNEIIKQLFNN +LDEVLLSTSSLFLPQTL++
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

6) BN843_700 in NC_021059


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  808 bits (3059),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/542 (88%), Positives = 520/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYDEVQTKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQENKVD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+KQI+ LLQ+IFQ+I  M+K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRI+IRKDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

7) ccrB in NC_017342


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  798 bits (3020),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  8    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  67
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  68   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  127
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  128  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  187
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  188  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  247
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  248  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  307
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  308  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  367
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  368  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  427
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  428  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  487
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  488  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  547
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  548  TI  549
             I
Sbjct  541  QI  542

8) MS7_0069 in NC_017351


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

9) SAKOR_00047 in NC_022226


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

10) ccrB in NC_017763


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

11) ccrB in NC_017338


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

12) SAMSHR1132_00400 in NC_016941


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

13) ccrB in NC_007793


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

14) ccrB in NC_010079


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

15) ccrB in NC_017340


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

16) SaurJH1_0049 in NC_009632


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEINTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERME+NTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

17) SaurJH9_0048 in NC_009487


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3008),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEINTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERME+NTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

18) ccrB in NC_002952


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA++G ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

19) ccrB in NC_009782


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

20) ccrB in NC_002758


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

21) ccrB in NC_002745


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

22) SERP2499 in NC_002976


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/542 (87%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA++G ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

23) ccrB in NC_022443


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  794 bits (3005),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/542 (87%), Positives = 518/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+HDIAYKQQQYDEV  K++NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDIMNQINQFKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDI NQ+NQ+K+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYLTVIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

24) ccrB in NC_003923


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  794 bits (3005),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/542 (86%), Positives = 518/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA++G ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRANVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRA+VIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKIIERVVARVNQENQVDCASLHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDK+I++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITYQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            S ++++I++YE QLNDIT Q+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++LK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

25) SE0036 in NC_004461


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  793 bits (3002),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/542 (86%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGK MN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480
            S ++++I++Y+ QLNDI +Q+NQLK+QQN++K SY++K+I+ +L+ +F+NIE M K+QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FN+ PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  TI  542
             I
Sbjct  541  QI  542

26) CA347_58 in NC_021554


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  787 bits (2978),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/543 (86%), Positives = 517/543 (96%), Gaps = 1/543 (0%)

Query  1    MQQLKTKRVGIYVRVSTKMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVST +QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLWDKVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHIVVAYKQQQYDEVQIKLNNLIKTIEDNPDL  420
            LEIVKSDKVI++V+ +VNQEN+VD +AL+H  +AYKQQQYDEV  KL+NL+KTIEDNPDL
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNH-DIAYKQQQYDEVSGKLHNLVKTIEDNPDL  419

Query  421  TSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRL  480
            TS ++++I++YE QLNDITNQ+NQLK+QQN++K  +D+K+I+ LLQ+IF++I  ++K++L
Sbjct  420  TSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQL  479

Query  481  KALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLY  540
            KALYL+VIDRIDI+KDGNHKKQFYVTLKLNNEIIKQLFNN  LDEV LSTSSLFLPQTL+
Sbjct  480  KALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLF  539

Query  541  LTI  543
            L I
Sbjct  540  LQI  542

27) SSP0035 in NC_007350


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  778 bits (2945),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/542 (87%), Positives = 517/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMN  60
            MQQLKQKRVGIYVRVSTE+QS+EGYSIDGQINQI+EYC+F++F V D+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  61   RPALQRMLHDANKGHIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RP LQR+L DAN G+ID VMVYKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGNLPLGYNNIPDNKKDLMINQH  180
            SGKLMLQILASFSEFERN I+EN++ GQ +RA EGYYQGNLPLGY++IPD+K +LMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKG+PFSI++VTYILSNPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  241  YKDWNDKRRKGLNDKPVIAEGKHAPIIGKDLWDKVQARKKQVSEKPQVHGKGTNILTGLI  300
            YKDWN+KRRKGLNDKP+IAEGKH+PII +DLWDKVQ RKKQVS+KPQVHGKGTN+LTG++
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  301  SCPQCSASMSASTTVNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
             CPQC+A+M+AS T NTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  361  LEIVKSDKVIKQVVERVNQEHQIDMAALNHDIAYKQQQYDEVQIKLDNLIKTLEDNPDLT  420
            LEIVKSDKVI+QV+ERVNQE+++D++ALNHDIAYKQQQYDEV  KL+NL+KT+EDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  421  SVLKNTIHQYEKQLNDittqinqlkqqqnqEKPSYDTKQIAALLQQIFQNVESMDKVQLK  480
            S LK TIHQYE QLNDIT Q+NQLKQQQNQEK SYDTKQIAALLQ+IFQN+ESMDK QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFL  540
            ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFN+ PLDEVLLSTSSLFLPQTLFL
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  541  QI  542
            QI
Sbjct  541  QI  542

28) ccrB in NC_002953


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  735 bits (2780),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/542 (86%), Positives = 514/542 (95%), Gaps = 1/542 (0%)

Query  1    MDKMKKKLVGGYIRVSTERQ-VEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMN  59
            M+++K+K VG Y+RVSTE Q  EGYSI+GQI QI +YC+FN + +VD+YADRGISGKSMN
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  60   RPELQRMLNDAKNGKLDCVMVYKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNS  119
            RPELQR+L+DA++G++D VMVYKTNRLARNTSDLL IVE+LHRQNVEFFSLSERMEV+ S
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFSEFERNTILENIYNGQHQRALKGYYQGNLPLGYNNIPDNKKELMINQH  179
            +GKLMLQILASFSEFERN I+EN++ GQ +RA  GYYQGNLPLGY++IPD+K ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK  239
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKG+PFSI S+TYIL NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  240  YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDkvqsrkkqvsqkpqvHGKGTNLLTGII  299
            YKDWNEKRRKGLNDKPIIA+GKH+PII Q+LWDKVQ RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  300  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  359
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  360  LEIVKSDKVLKQVVERVNQDNQVDVAALNHDIAYKQQQFDEVNIKLKNLVQTIEDNPDLT  419
            LEIVKSDKV++QV+ERVNQ+N+VD++ALNHDIAYKQQQ+DEV+ KL NLV+TIEDNPDLT
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  420  SALKPTIHQYETKLNDITnqmnqlkqqqnqEKPSYDTKQIAALLQRIFQNIESMDKSQLK  479
            SALK+TIHQYET+LNDITNQMNQLKQQQNQEK SYDTKQIAALLQRIFQNIESMDK+QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  480  ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYF  539
            ALYLTVIDRIDIRKD NHKKQFYVTLKLNNEIIKQLFNN  LDEVLLSTSSLFLPQTL++
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  540  QI  541
            QI
Sbjct  541  QI  542

29) BN843_340 in NC_021059


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  717 bits (2714),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/542 (74%), Positives = 494/542 (92%), Gaps = 1/542 (0%)

Query  1    MKQLKKKRIGLYARVSTEMQ-TDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQ  59
            M+QLK+KR+G+Y RVSTE+Q T+GYSI+GQ+NQ+ EYC+F+ + VV+ Y+DRGISGK+M+
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  60   RPELQRMLKDANEGKLDCIMVYKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASS  119
            RPELQR+LKDANEG++D +MVYKTNRLARNTSDLL+IVE+L + NVEFFSL+E++E+ +S
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNLPLGYDKVPDSKKELMINQH  179
            +GKLMLQILASF+EFERN IVENV+ GQ +RA EGYYQGNLPLGYDK+PDSK ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAK  239
            EANIVKYIF+SYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYI+SNPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  240  YRHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIV  299
            Y++W++KRRKGLN+ PIIA+GKH+PII ++LWDKVQ+++++  +KPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  300  KCPKCGAAMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQI  359
             CP+CGA+MAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADV+EKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  360  LEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEEIKAKMHTLTKTIEDSPDLD  419
            LEI+KS KV++Q++E+VN+ +++D+++LNHDIAYKQ Q +E+ +K+H L KTIED+PDL 
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  420  SVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLK  479
            S LK+TI  Y+ +LN+I NQ+ QL Q+++ E   YD+  IA +LQ IF++I+ ++K+QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  480  SLYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYI  539
            +LYLT+IDRIDIRKD +HKKQFYVTLKLNN+IIKQLFNN PLDEVL STSSLFLPQTL++
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  540  TI  541
             I
Sbjct  541  QI  542

30) SE0056 in NC_004461


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  717 bits (2711),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/542 (74%), Positives = 493/542 (91%), Gaps = 1/542 (0%)

Query  1    MKQLKKKRIGLYARVSTEMQ-TDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQ  59
            M+QLK+KR+G+Y RVSTE+Q T+GYSI+GQ+NQ+ EYC+F+ + VV+ Y+DRGISGK+M+
Sbjct  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60

Query  60   RPELQRMLKDANEGKLDCIMVYKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASS  119
            RPELQR+LKDANEG++D +MVYKTNRLARNTSDLL+IVE+L + NVEFFSL+E++E+ +S
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNLPLGYDKVPDSKKELMINQH  179
            +GKLMLQILASF+EFERN IVENV+ GQ +RA EGYYQGNLPLGYDK+PDSK ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAK  239
            EANIVKYIF+SYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYI+SNPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240

Query  240  YRHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIV  299
            Y++W++KRRKGLN+ PIIA+GKH+PII ++LWDKVQ+++++  +KPQVHGKGTNLLTGIV
Sbjct  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300

Query  300  KCPKCGAAMEASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQI  359
             CP+CGA+M ASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADV+EKYVMDQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360

Query  360  LEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEEIKAKMHTLTKTIEDSPDLD  419
            LEI+KS KV++Q++E+VN+ +++D+++LNHDIAYKQ Q +E+ +K+H L KTIED+PDL 
Sbjct  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420

Query  420  SVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLK  479
            S LK+TI  Y+ +LN+I NQ+ QL Q+++ E   YD+  IA +LQ IF++I+ ++K+QLK
Sbjct  421  SALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480

Query  480  SLYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYI  539
            +LYLT+IDRIDIRKD +HKKQFYVTLKLNN+IIKQLFNN PLDEVL STSSLFLPQTL++
Sbjct  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNPPLDEVLLSTSSLFLPQTLFL  540

Query  540  TI  541
             I
Sbjct  541  QI  542

31) Lp16_0045 in NC_021514


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 209/518 (41%), Positives = 363/518 (71%), Gaps = 10/518 (1%)

Query  10   KAKRAVGYVRVSTAEQADEGFSVAAQGELIRQECTRYGNEMQFVKLYADEGISGKSIKRR  69
            K KR   YVRVST  Q+ EG+S+ +Q + IR+ C    N+   V +YAD GISGKS++R 
Sbjct  5    KQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCD--FNNFVVVDVYADRGISGKSMNR-  61

Query  70   PQMQQLLADVQAGEIDAVICWNISRIARNVANLLEIVDIFERNDVSFISINEKMDTQTPA  129
            P++Q+LL D + G+ID+V+  + +R+ARN ++LL IV+ ++R++V F+S++E+M+ +T++
Sbjct  62   PELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSS  121

Query  130  GRLMLQIMASMGEYERNNIAENVYMGSRRRAVEGWNNSGLVLGYDNVVDEDGNHTLQINP  189
            G+LMLQI+AS +E+ERNNI ENV+MG  RRA EG  ++ L LGYD++   D++H L IN 
Sbjct  122  GKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKI--PDSKHELMINQ  179

Query  190  DEAKIIRHIFDLAALGKGLRAIANELNQTGNRTKRGNAFSTTAVKAILTNPLYVGKVRYG  249
            +EA+I++ IF+  A G G R IAN LN+ G  TK+G++FS  +V  IL+NP+YVGK++++
Sbjct  180  HEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFA  239

Query  250  QYRHWDKKRRHGKQADYVLVDGQHPAIIEPQQWSRVVSLMKQRHKLPAWTRQGSNVLTGL  309
            +Y++W+ KRR G +   ++ +G+H++II  + W +V    KQ  + P    +G+N+LTG+
Sbjct  240  KYKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGI  299

Query  310  LRCPECGGPMAAANTTNRLANGTRKRIRYYSCANFRNKGAAVCHANSIRaeeaeqlvqek  369
            ++CP+CG+PMAA+NTTN L +GT+KRIRYYSC+NFRNKG+ VC ANS+RA+  E+ V ++
Sbjct  300  VHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQ  359

Query  370  llqvlGMPKIGQQVIKQMKDSRQERCQSLKRQQCTNQAEQTRLEENIQEYERLMTDNHEL  429
            +L+++   K+ +QV+ ++++  +    +L+++   +Q +   +  ++++  + + DN +L
Sbjct  360  ILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDL  419

Query  430  QAAIRPRMEALENQLDQLHADSQQVAKQLAQVDQLP-KPKSIDSLLALVVKLIKSAEKDT  488
             +A+++ ++  E QL+++  + +Q+ +Q  Q ++L+   K I +LL  + + I S +K  
Sbjct  420  TSALKATIHQYETQLNDITNQMNQLKQQQNQ-EKLSYDTKQIAALLQRIFQNIESMDKAQ  478

Query  489  LKQLYQAFIRQITFNR---QQKLVWITVAFDDDVIQQL  523
            LK LY + I +I + +   ++K   +T+ +++++I+QL
Sbjct  479  LKALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQL  516

32) ccrB5 in NC_019425


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  315 bits (1181),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 216/538 (41%), Positives = 355/538 (66%), Gaps = 9/538 (1%)

Query  3    EPIERKRVAGYIRVSTEEQAEEGYSLDAQRENILRFCDQHHYELVDVYADEGISGKTIEK  62
            + + +KRV+ Y+RVSTE Q+ EGYS+D+Q ++I  +CD +++ +VDVYAD GISGK+++ 
Sbjct  2    QQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN-  60

Query  63   RPGIKCLMADASKNKFDLVVVWKLTRLGRSIKDVLGIAELLFANNVEFRSISENFDISTS  122
            RP ++ L+ DA+  ++D V+V K  RL+R+  D+L I E L  +NVEF S+SE  +++TS
Sbjct  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120

Query  123  TGRLMFQMLGVFGEFERNQISENVSMAMTSLVKHKKRFAGGRMLGYVSAVDESGVKILQV  182
            +G+LM+Q+L+ F+EFERN+I ENV M+ T    +   + G   LGY    D      L +
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRA-QEGYYQGNLPLGYDKIPDSK--HELMI  177

Query  183  EPNEAEIVRLIFGQYLQGKGYRAIANFLNKQGYQTVKGNSFTTIAVKGILMNPTYAGYLR  242
            + +EA+IV+ IF  Y +G GYR IAN LN +GY T KG++F+  +V  IL NP Y G ++
Sbjct  178  NQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQ  237

Query  243  YGKYINWEEKRRKGLNPHPIQVEGSHEPIIEKEVYHHIQEKLKVNHAQPKWTHNGENVLT  302
            ++KY +W+EKRRKGLN  PI  EG H PII +++ + +Q + K    +P+   +G N+LT
Sbjct  238  FAKYKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLT  297

Query  303  GLLKCPECGAPMAASNTTNTLKDGTKKRMRYYSCSVFRSKGSSICHANSIRAEVAETFVE  362
            G++ CP+CGAPMAASNTTNTLKDGTKKR+RYYSCS FR+KGS +C ANS+RA+V E +V 
Sbjct  298  GIVHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVM  357

Query  363  ERLKEVVLLPAHLKEIIKGLNKELKEQRAPleleqkvvqqqeHDIQAKITKWKSLINDTP  422
            +++ E+V     +++++  +N+E K + ++L+ +    QQQ +++ +K+ +    I+D P
Sbjct  358  DQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNP  417

Query  423  ELAKELEARMKELEIELAVTRQRRQTIATFLEKEGVQLNPAEVEKMLHYVNALLEGRNKK  482
            +L+  L A + + E +L    ++ + +    ++E +  +  ++  +L+ +   +E+ +K 
Sbjct  418  DLTSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKA  477

Query  483  DIKAIYRTFIESITFNKETKGDIQ--IRMLFDAPIINQLNQVYQAGGTSQVGVSPVSL  538
            ++KA+Y T I+ I + K+ +   Q  + + ++  II+QL   ++     +V +S  SL
Sbjct  478  QLKALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQL---FNNPPLDEVLLSTSSL  532

33) BACI_c54540 in NC_014335


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 201/479 (42%), Positives = 320/479 (67%), Gaps = 12/479 (2%)

Query  3    QVVIYARVSTAEQAEEGYSIDAQLDVVKKRCEQEGRIVVDNYVDRGISGKAMGNRAELQR  62
            +V IY RVST  Q+ EGYSID+Q++ ++  C+ +  +VVD Y DRGISGK+M NR+ELQR
Sbjct  8    RVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSM-NRPELQR  66

Query  63   LLRDAGENKFQEIWVWKTNRLARNHLDLLKIVDELNKNNVGFKSCSEAFDTATPTGKLLM  122
            LL+DA E +++ + V KTNRLARN  DLLKIV++L+++NV F S SE  +  T++GKL++
Sbjct  67   LLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLML  126

Query  123  NVLASIGEFERESIVENVKMGMKQRAREGKWNGGIVLGYNTVKIDKTENKTKLEVEEKEA  182
            ++LAS++EFER++IVENV MG  +RA+EG  +G + LGY+ +     ++K  L +++ EA
Sbjct  127  QILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKI----PDSKHELMINQHEA  182

Query  183  YIVKEIFKLYAEGRGLKAITNLVNKLGYRTKRGNFFTPIAIRTILLNPIYIGKIRYNVRE  242
             IVK IF  YA G+G + I+N +N  GY TK+G+ F+  ++  IL NP+Y+GKI++    
Sbjct  183  NIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAKYK  242

Query  243  NWSEKRRKGINENPIYTNGNHDPIISLDLWNRVQELYKKKSQKPKRLFDGTFPLTGLIKC  302
            +W+EKRRKG+N++PI ++G+H PII  DLW++VQ   K+ SQKP+    GT  LTG++ C
Sbjct  243  DWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHC  302

Query  303  PMCGASMVAGRVKRKLKDGNINIIRYYQCGAWRNKGTAACRSNGVRADKIEKQVFKRINQ  362
            P CGA+M A+     LKDG  + IRYY C+  RNKG+  C +N+VRAD IEK V  +I +
Sbjct  303  PQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILE  362

Query  363  IVLNDKILKDTVSKLNDNTHNKIKPLEEALNITNKKIQNFEKKKSRIFDLYEEGTIAKEV  422
            IV +DK++++ + ++N++    I +L++ +     K Q+++   +++ +L       +  
Sbjct  363  IVKSDKVINQVLERVNQENKVDIGALNHDIAY---KQQQYDEVSGKLHNL-VKTIEDNPD  418

Query  423  LTSRLEHISNEIQMNFVQKISIEKELKQNTSN---PIPVDTVKKLLIRFHHLIGIMEPA  478
            LTS L    ++ + ++ +  +  ++LKQ+ ++   +     +  LL R+ + I  M+ A
Sbjct  419  LTSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKA  477

34) BATR1942_18125 in NC_014639


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 180/394 (46%), Positives = 270/394 (69%), Gaps = 8/394 (2%)

Query  21   QKRAAIYARVSTLEQAEEGYSIDEQVRVLREMCEREGYVVHKEYVDRGKSGKNIKGRPAL  80
            QKR +IY RVST  Q+ EGYSID Q+  +RE C+ + +VV   Y DRG SGK+++ RP L
Sbjct  6    QKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN-RPEL  64

Query  81   QQLLHDAKGKDFNLVLVWKVNRFSRKTKDLLNIVEELEMRNIVFRSFTERYETETPAGKM  140
            Q+LL DA+  +++ V+V K NR++R+T DLL+IVE+L+ +N+ F S++ER E +T++GK+
Sbjct  65   QRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKL  124

Query  141  QFRMLAVIAEFERDNIAQNVKMGMLARAKEGSWNGGQVLGYDVISVPGENRKRKLSTLVV  200
             +++LA ++EFER+NI +NV MG   RA+EG  +G   LGYD   +P+ ++      L++
Sbjct  125  MLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYD--KIPDSKH-----ELMI  177

Query  201  NPTEAQTVRKVFDLYVEGNGYKSIANKLNKEGHRTKKNKDFSINGVKTILSNPLYAGFIR  260
            N  EA+ V+ +F+ Y  G+GY+ IAN LN  G  TKK K FSI +V  ILSNP+Y G I+
Sbjct  178  NQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQ  237

Query  261  YNVRRDWNEKRRNNINPHPVIEKGHHEAIISEETWEKAKNIMASRSGKPNRIHDGEFPLT  320
            +   +DWNEKRR+ +N  P+I  G H +II ++ W+K +      S KP+    G   LT
Sbjct  238  FAKYKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLT  297

Query  321  GIMKCPACGAGMVIGRTTNTLKDGTKKVLEYYVCGAWKNKGTAVCRSNGVRTDYADPYVL  380
            GI+ CP CGA M  + TTNTLKDGTKK + YY C+  +NKG+ VC +N+VR+D  + YV+
Sbjct  298  GIVHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVM  357

Query  381  EKLSTIATSDVLIEQIVERINNKKERDSSPLQHE  414
            +++  I  SD +I+Q++ER+N+ +  D ++L+H+
Sbjct  358  DQILEIVKSDKVINQVLERVNQENKVDIGALNHD  391

35) Bsph_4747 in NC_010382


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  288 bits (1079),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 204/506 (41%), Positives = 341/506 (68%), Gaps = 22/506 (4%)

Query  14   RRRIAIYARVSTTEQAEEGYSIDEQIRVLKEYCEDNGYFVFEEYIDRGISGKNITGRPAV  73
            ++R++IY RVST  Q+ EGYSID QI  ++EYC+ N + V + Y DRGISGK++  RP +
Sbjct  6    QKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN-RPEL  64

Query  74   QRMLQDAEQKKLDVVLVWKMNRLARKMVDLMNIVELLNSKNIAFRSHTERYETETPTGKL  133
            QR+L+DA++ ++D V+V K NRLAR+  DL++IVE L+ +N+ F S +ER E +T++GKL
Sbjct  65   QRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKL  124

Query  134  QFQMMAAIAEYERNNIAENVKMGMIARAKEGKWNGGQVLGYDIVQIPDANKKRKNTQLVI  193
             +Q++A+++E+ERNNI ENV MG   RA+EG  +G   LGYD  +IPD++      +L+I
Sbjct  125  MLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYD--KIPDSKH-----ELMI  177

Query  194  NEKEAEIVQYIFNMYTSGHGYKAIANHINkkgfltkkgktfSLNAIKTIVTNPVYTGYIR  253
            N+ EA+IV+YIF+ Y+ GHGY+ IAN +N KG++TKKGK FS+ ++  I++NP Y G I+
Sbjct  178  NQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQ  237

Query  254  YNVRRDWNEKRRNNINPDPVIQKADHSPIITEEMWSIAKGIFERRSGLPNRVHD-GEFPL  312
            +   +DWNEKRR+ +N  P+I  + HSPII +++W   + +  ++ +   +VH+ G   L
Sbjct  238  FAKYKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQ-LRKKQVSQKPQVHGKGTNLL  296

Query  313  TGIMRCPICDAGMVIGRTTNTLKDGTKKVLEYYVCGAWKNKGTLVCRSNGVRTDKADAYV  372
            TGI++CP C+A M  + TTNTLKDGTKK + YY C+  +NKG+ VC +N+VR+D  + YV
Sbjct  297  TGIVHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYV  356

Query  373  FSKLQTLMQSDKLIQELVNNVNQRNEKLFAPIQKEHAFYQKQMQELE---HKRGKTFDAY  429
              ++  +++SDK+I+++++ VNQ N   +++++ + A+ Q+Q +E+    H+  KT++  
Sbjct  357  MDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDN  416

Query  430  TEELIPKSLYIEKANALDKQIAELNERMKPLNRQMQGNSGETIAPEAIRKILKDFSKAFE  489
             +  +  +L     +  + Q+ ++ ++M+ L++Q Q +   +     I  +L+   + F+
Sbjct  417  PD--LTSAL-KATIHQYETQLNDITNQMNQLKQQ-QNQEKLSYDTKQIAALLQ---RIFQ  469

Query  490  --QALTREQRKRLLHLIINKITINED  513
              +++ + Q K L   +I++I I  D
Sbjct  470  NIESMDKAQLKALYLTVIDRIDIRKD  495

36) spoIVCA in NC_006270


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  242 bits (903),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/385 (43%), Positives = 264/385 (69%), Gaps = 8/385 (2%)

Query  5    KRVAIYCRVSTEEQATEGYSISAqlqtlrqytqlyGWEIAEEYVDEGISGKNISGRPAMQ  64
            KRV+IY RVSTE Q+TEGYSI +Q++ +R+Y ++    + + Y D GISGK+++ RP +Q
Sbjct  7    KRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN-RPELQ  65

Query  65   KLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLV  124
            +L+ D + +++++V+V K +RL+RN  D L +++ ++   V F+S SE  +  ++ G+L+
Sbjct  66   RLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLM  125

Query  125  VQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYDTIE---KELVINKKEAEIV  181
            +Q++AS++E ERN + ENV +G  +RA EG  +G + +GYD I     EL+IN+ EA+IV
Sbjct  126  LQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQHEANIV  185

Query  182  QQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENWD  241
            + I++ YA+G G + IAN LN  GY TK+   FSI +V+ IL N +Y GKI   K  +W+
Sbjct  186  KYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAKYKDWN  245

Query  242  TKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQR-QSNEPFLLSSLLRCPDC  300
             KRR+G N +PI+ EG+H +II ++LW  VQ R+K  S K + +++   LL+++++CP+C
Sbjct  246  EKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHCPQC  305

Query  301  GQGMVPAITTNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILS  360
            G  M ++ TTN  KDGTKK+ RYY CSNF+NKGS  C ANS++A   E  V+++I  I+ 
Sbjct  306  GAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVK  365

Query  361  NQ---NQLFSKLQSINTTSIESLNQ  382
            ++   NQ++ +++  N   I +LN+
Sbjct  366  SDKVINQVLERVNQENKVDIGALNH  390

37) BLi04323 in NC_006322


> AB047088|7|G6|13928279|BAB46972.1|Staphylococcus_aureus_85/3907|+|6003..7631|ccrB3|-|cassette 
chromosome recombinase B3
Length=542

 Score =  242 bits (903),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/385 (43%), Positives = 264/385 (69%), Gaps = 8/385 (2%)

Query  5    KRVAIYCRVSTEEQATEGYSISAqlqtlrqytqlyGWEIAEEYVDEGISGKNISGRPAMQ  64
            KRV+IY RVSTE Q+TEGYSI +Q++ +R+Y ++    + + Y D GISGK+++ RP +Q
Sbjct  7    KRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN-RPELQ  65

Query  65   KLISDVEKDKFQAVLVWKISRLSRNMLDTLTLLDKFEDYGVKFISYSENFDTGSPIGRLV  124
            +L+ D + +++++V+V K +RL+RN  D L +++ ++   V F+S SE  +  ++ G+L+
Sbjct  66   RLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLM  125

Query  125  VQLMASIAEMERNTLSENVKLGMKQRALEGSWNGGVVFGYDTIE---KELVINKKEAEIV  181
            +Q++AS++E ERN + ENV +G  +RA EG  +G + +GYD I     EL+IN+ EA+IV
Sbjct  126  LQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQHEANIV  185

Query  182  QQIYQLYANGKGLKSIANYLNKAGYRTKRNCYFSINGVAQILDNVIYNGKISWLKVENWD  241
            + I++ YA+G G + IAN LN  GY TK+   FSI +V+ IL N +Y GKI   K  +W+
Sbjct  186  KYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAKYKDWN  245

Query  242  TKRRRGKNPNPILVEGQHEAIISDELWSMVQARRKSKSFKQR-QSNEPFLLSSLLRCPDC  300
             KRR+G N +PI+ EG+H +II ++LW  VQ R+K  S K + +++   LL+++++CP+C
Sbjct  246  EKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHCPQC  305

Query  301  GQGMVPAITTNKRKDGTKKKYRYYVCSNFHNKGSSACRANSIKAYDAEYEVINKIEKILS  360
            G  M ++ TTN  KDGTKK+ RYY CSNF+NKGS  C ANS++A   E  V+++I  I+ 
Sbjct  306  GAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVK  365

Query  361  NQ---NQLFSKLQSINTTSIESLNQ  382
            ++   NQ++ +++  N   I +LN+
Sbjct  366  SDKVINQVLERVNQENKVDIGALNH  390