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Homologs of regB gene of NC_009480_P1

1161

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) regB
( YP_001220830.1 )

putative two-component system response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

9e-97

100

2) Sked_19740
( YP_003314733.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

2e-48

3) Snas_4946
( YP_003513680.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

2e-45

4) Kfla_1364
( YP_003379265.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

4e-45

5) MLP_34300
( YP_004573847.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

1e-43

6) FraEuI1c_4331
( YP_004018200.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

2e-43

7) Amir_6405
( YP_003104052.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-43

8) MODMU_4192
( YP_006368058.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_017955
(Modestobacter marinus BC501)

6e-43

9) Kfla_6611
( YP_003384402.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-42

10) AORI_6724
( YP_008015709.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-42

11) BN159_1987
( YP_007520493.1 )

two-component system regulatory protein

NC_020504
(Streptomyces davawensis JCM 4913)

4e-42

12) BN159_4331
( YP_007522837.1 )

two component transcriptional regulator, LuxR family

NC_020504
(Streptomyces davawensis JCM 4913)

5e-42

13) SVEN_5416
( YP_006880961.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

5e-42

14) Amir_4511
( YP_003102201.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

8e-42

15) B737_7772
( YP_008464101.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

3e-41

16) RAM_40545
( YP_005536033.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

3e-41

17) AMES_7772
( YP_006554250.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

3e-41

18) AMED_7890
( YP_003769998.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

3e-41

19) SBI_06240
( YP_004964491.1 )

putative response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-41

20) SBI_09282
( YP_004967531.1 )

two component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-41

21) Snas_2037
( YP_003510825.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-41

22) NOCYR_2007
( YP_005263432.1 )

putative two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

6e-41

23) VAB18032_17540
( YP_004405210.1 )

LuxR family two component transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

8e-41

24) Psed_5392
( YP_004335379.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

1e-40

25) B446_06410
( YP_008384917.1 )

putative two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

1e-40

26) AMIS_35870
( YP_005463323.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-40

27) L083_5013
( YP_007953003.1 )

LuxR family transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

1e-40

28) Kfla_4302
( YP_003382136.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-40

29) Sros_1523
( YP_003337259.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

2e-40

30) Strvi_0394
( YP_004810462.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

4e-40

31) ACPL_1954
( YP_006264919.1 )

Transcriptional regulatory protein ydfI

NC_017803
(Actinoplanes sp. SE50/110)

6e-40

32) KSE_59680
( YP_004907694.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

7e-40

33) SHJG_2516
( YP_006243664.1 )

two component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

8e-40

34) SHJGH_2280
( YP_007691280.1 )

two component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

8e-40

35) SCAB_88551
( YP_003494314.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

9e-40

36) BN159_0462
( YP_007518968.1 )

LuxR family two component transcriptional regulator

NC_020504
(Streptomyces davawensis JCM 4913)

4e-39

37) Tcur_0110
( YP_003297756.1 )

LuxR family two component transcriptional regulator

NC_013510
(Thermomonospora curvata DSM 43183)

5e-39

38) ML5_0274
( YP_004079977.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

6e-39

39) HMPREF0573_10929
( YP_003718742.1 )

LuxR family response regulator

NC_014246
(Mobiluncus curtisii ATCC 43063)

7e-39

40) Caci_7160
( YP_003117830.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

8e-39

41) Krad_1198
( YP_001360950.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

8e-39

42) YM304_34340
( YP_007565686.1 )

putative NarL family two-component response regulator

NC_020520
(Ilumatobacter coccineum YM16-304)

8e-39

43) XNR_4715
( YP_007748040.1 )

LuxR family wo-component system response regulator

NC_020990
(Streptomyces albus J1074)

9e-39

44) Micau_0299
( YP_003833442.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

1e-38

45) MTES_0203
( YP_004223047.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

1e-38

46) Namu_3387
( YP_003202704.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

2e-38

47) Kfla_2026
( YP_003379916.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-38

48) Gobs_2015
( YP_003409075.1 )

two component LuxR family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

3e-38

49) SBI_07465
( YP_004965716.1 )

putative two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-38

50) FRAAL0665
( YP_710945.1 )

two-component system response regulator

NC_008278
(Frankia alni ACN14a)

3e-38

51) FsymDg_2414
( YP_004583714.1 )

two component LuxR family transcriptional regulator

NC_015656
(Frankia sp. 4085684)

4e-38

52) SCG22.16c
( NP_625364.1 )

two component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

5e-38

53) Bcav_1731
( YP_002881749.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

5e-38

54) BN159_5779
( YP_007524285.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

6e-38

55) Sros_4508
( YP_003340116.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

6e-38

56) AORI_3917
( YP_008012905.1 )

LuxR family two component transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

8e-38

57) Francci3_0303
( YP_479419.1 )

LuxR family transcriptional regulator

NC_007777
(Frankia sp. CcI3)

8e-38

58) B737_8099
( YP_008464428.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-37

59) RAM_42240
( YP_005536372.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-37

60) AMES_8098
( YP_006554576.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-37

61) AMED_8225
( YP_003770325.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-37

62) Snas_3287
( YP_003512048.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-37

63) nfa30350
( YP_119246.1 )

two-component system response regulator

NC_006361
(Nocardia farcinica IFM 10152)

2e-37

64) BN6_84250
( YP_007042513.1 )

Two-component system, response regulator of the LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-37

65) F750_2691
( YP_007859656.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

2e-37

66) Gbro_4119
( YP_003275174.1 )

response regulator receiver

NC_013441
(Gordonia bronchialis DSM 43247)

2e-37

67) Sfla_4447
( YP_004925369.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

2e-37

68) F750_2246
( YP_007859224.1 )

putative two-component system response regulator

NC_021055
(Streptomyces sp. PAMC26508)

2e-37

69) Celf_2706
( YP_004454217.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

2e-37

70) O3I_033565
( YP_006811636.1 )

response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

3e-37

71) Snas_4662
( YP_003513398.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

3e-37

72) Franean1_3390
( YP_001507698.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

4e-37

73) Caci_3748
( YP_003114491.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

4e-37

74) Franean1_6511
( YP_001510754.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

4e-37

75) ROP_66720
( YP_002783864.1 )

NarL family two-component response regulator

NC_012522
(Rhodococcus opacus B4)

4e-37

76) B446_13020
( YP_008386233.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

4e-37

77) Sros_8793
( YP_003344171.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

5e-37

78) TIIST44_10020
( YP_005986470.1 )

putative two-component response regulator

NC_017550
(Propionibacterium acnes ATCC 11828)

6e-37

79) SVEN_3441
( YP_006878986.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

7e-37

80) BN159_6270
( YP_007524776.1 )

two component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

1e-36

81) PALO_06420
( YP_007871256.1 )

putative two-component response regulator

NC_021064
(Propionibacterium avidum 44067)

1e-36

82) SAV_5605
( NP_826782.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

1e-36

83) SBI_07179
( YP_004965430.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-36

84) TIA2EST22_04610
( YP_004946432.1 )

two-component response regulator

NC_016512
(Propionibacterium acnes P.acn17)

1e-36

85) TIA2EST36_04585
( YP_004944190.1 )

two-component response regulator

NC_016511
(Propionibacterium acnes P.acn31)

1e-36

86) TIB1ST10_04775
( YP_005944531.1 )

putative two-component response regulator

NC_017535
(Propionibacterium acnes 6609)

1e-36

87) PPA0926
( YP_055637.1 )

two-component response regulator

NC_006085
(Propionibacterium acnes KPA171202)

1e-36

88) Franean1_4684
( YP_001508957.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

8e-37

89) SVEN_1822
( YP_006877368.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

8e-37

90) yxjL
( YP_004910817.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

9e-37

91) SCATT_12900
( YP_006053182.1 )

two component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

9e-37

92) VAB18032_04660
( YP_004402658.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

9e-37

93) L083_4067
( YP_007952057.1 )

two component transcriptional regulator, LuxR family

NC_021191
(Actinoplanes sp. N902-109)

9e-37

94) Sked_37860
( YP_003316503.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

9e-37

95) Strvi_7533
( YP_004817164.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

9e-37

96) SFUL_1959
( YP_007930807.1 )

Two component transcriptional regulator, LuxR family

NC_021177
(Streptomyces fulvissimus DSM 40593)

1e-36

97) nfa4180
( YP_116624.1 )

two-component system response regulator

NC_006361
(Nocardia farcinica IFM 10152)

2e-36

98) SHJG_5948
( YP_006247088.1 )

two component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

2e-36

99) SHJGH_5710
( YP_007694707.1 )

two component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

2e-36

100) ML5_1327
( YP_004081017.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

2e-36

101) MODMU_2541
( YP_006366455.1 )

LuxR family two component transcriptional regulator

NC_017955
(Modestobacter marinus BC501)

2e-36

102) CVAR_0285
( YP_004758706.1 )

two-component system response regulator

NC_015859
(Corynebacterium variabile DSM 44702)

2e-36

103) PAGK_1226
( YP_007887565.1 )

putative two-component response regulator

NC_021085
(Propionibacterium acnes HL096PA1)

2e-36

104) HMPREF0675_3985
( YP_003581152.1 )

transcriptional regulator, LuxR family

NC_014039
(Propionibacterium acnes SK137)

2e-36

105) B446_05485
( YP_008384734.1 )

two component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

3e-36

106) Xcel_1618
( YP_003326200.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

3e-36

107) all4635
( NP_488675.1 )

two-component response regulator

NC_003272
(Nostoc sp. PCC 7120)

3e-36

108) AMIS_17040
( YP_005461440.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

3e-36

109) L083_2306
( YP_007950296.1 )

putative two component system response regulator

NC_021191
(Actinoplanes sp. N902-109)

3e-36

110) MTES_0987
( YP_004223831.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

3e-36

111) SBI_08844
( YP_004967093.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

4e-36

112) yxjL
( YP_004910332.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

4e-36

113) SCATT_07960
( YP_006052689.1 )

two component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

4e-36

114) SGR_5344
( YP_001826856.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

4e-36

115) O3I_002360
( YP_006805409.1 )

putative two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

4e-36

116) BN6_84180
( YP_007042506.1 )

Transcriptional regulator, LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

4e-36

117) AMIS_30430
( YP_005462779.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

5e-36

118) AORI_2982
( YP_008011971.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

5e-36

119) Psed_2860
( YP_004332913.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

6e-36

120) SVEN_2193
( YP_006877738.1 )

putative two-component system response regulator

NC_018750
(Streptomyces venezuelae ATCC 10712)

6e-36

121) SBI_00614
( YP_004958866.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-35

122) SCAB_66041
( YP_003492144.1 )

response regulator

NC_013929
(Streptomyces scabiei 87.22)

1e-35

123) Strvi_6772
( YP_004816432.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

7e-36

124) SGR_5123
( YP_001826635.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

7e-36

125) Micau_1079
( YP_003834217.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

8e-36

126) Ava_2028
( YP_322545.1 )

two component LuxR family transcriptional regulator

NC_007413
(Anabaena variabilis ATCC 29413)

8e-36

127) yxjL
( YP_006365886.1 )

transcriptional regulator YxjL

NC_017955
(Modestobacter marinus BC501)

1e-35

128) RER_36800
( YP_002767127.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

1e-35

129) Sros_2533
( YP_003338252.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

1e-35

130) NOCYR_0427
( YP_005261890.1 )

putative two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

1e-35

131) SACE_1706
( YP_001103949.1 )

two component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

1e-35

132) AMIS_63410
( YP_005466077.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-35

133) O5Y_16925
( YP_008453951.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

2e-35

134) SCH63.03c
( NP_627946.1 )

two component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-35

135) Strvi_5814
( YP_004815604.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-35

136) AMIS_23380
( YP_005462074.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-35

137) Asphe3_30180
( YP_004242263.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

2e-35

138) Franean1_7161
( YP_001511386.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

2e-35

139) SCC121.20c
( NP_626757.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-35

140) EGYY_26360
( YP_004712038.1 )

hypothetical protein

NC_015738
(Eggerthella sp. YY7918)

3e-35

141) SC1A9.04
( NP_630245.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

3e-35

142) SFUL_1171
( YP_007930029.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

3e-35

143) Amir_7009
( YP_003104647.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-35

144) SAV_6671
( NP_827847.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

3e-35

145) SHJG_3092
( YP_006244239.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-35

146) SHJGH_2856
( YP_007691856.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-35

147) SCAB_73371
( YP_003492857.1 )

two-component response regulator

NC_013929
(Streptomyces scabiei 87.22)

3e-35

148) SCF51.20c
( NP_624742.1 )

two-component response regulator

NC_003888
(Streptomyces coelicolor A3(2))

5e-35

149) SACTE_1084
( YP_004801549.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

5e-35

150) B737_0945
( YP_008457278.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

5e-35

151) RAM_04830
( YP_005528915.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

5e-35

152) AMES_0944
( YP_006547426.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

5e-35

153) AMED_0948
( YP_003763169.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

5e-35

154) SAV_6039
( NP_827215.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

5e-35

155) SGR_5850
( YP_001827362.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

5e-35

156) SBI_08471
( YP_004966720.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

5e-35

157) yxjL
( YP_004914654.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

5e-35

158) SCATT_51560
( YP_006057049.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

5e-35

159) B446_08540
( YP_008385343.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

5e-35

160) SVEN_1246
( YP_006876792.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

5e-35

161) Strvi_6659
( YP_004816321.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

5e-35

162) SCI41.37
( NP_625929.1 )

two-component response regulator

NC_003888
(Streptomyces coelicolor A3(2))

5e-35

163) AMIS_42300
( YP_005463966.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

6e-35

164) BLASA_1015
( YP_005328000.1 )

Two component response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016943
(Blastococcus saxobsidens DD2)

6e-35

165) AMIS_29370
( YP_005462673.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

6e-35

166) Cfla_2683
( YP_003637768.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

6e-35

167) Krad_2658
( YP_001362394.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

7e-35

168) Sfla_5182
( YP_004926098.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

7e-35

169) F750_1452
( YP_007858436.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

7e-35

170) BN159_6929
( YP_007525435.1 )

two-component response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

7e-35

171) Cal6303_0033
( YP_007135117.1 )

LuxR family two component transcriptional regulator

NC_019751
(Calothrix sp. PCC 6303)

7e-35

172) BN159_7851
( YP_007526357.1 )

two component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

8e-35

173) KSE_66540
( YP_004908369.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

8e-35

174) SVEN_0704
( YP_006876250.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

9e-35

175) B446_11330
( YP_008385899.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

9e-35

176) Caci_1951
( YP_003112712.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-34

177) PFREUD_17750
( YP_003688705.1 )

two-component system, regulatory protein

NC_014215
(Propionibacterium freudenreichii CIRM-BIA1)

1e-34

178) SCAB_1061
( YP_003485911.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

1e-34

179) Noca_1020
( YP_922226.1 )

response regulator receiver

NC_008699
(Nocardioides sp. JS614)

1e-34

180) ACPL_6578
( YP_006269528.1 )

yhcZ-like transcriptional regulatory protein

NC_017803
(Actinoplanes sp. SE50/110)

1e-34

181) Snas_1509
( YP_003510306.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-34

182) XNR_5174
( YP_007748493.1 )

Two component transcriptional regulator, LuxR family

NC_020990
(Streptomyces albus J1074)

1e-34

183) Sfla_3358
( YP_004924296.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

1e-34

184) F750_3382
( YP_007860333.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

1e-34

185) AMIS_66280
( YP_005466364.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-34

186) B737_9123
( YP_008465451.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

2e-34

187) RAM_47490
( YP_005537420.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

2e-34

188) AMES_9122
( YP_006555599.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

2e-34

189) AMED_9260
( YP_003771350.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

2e-34

190) SBI_03418
( YP_004961670.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-34

191) BN159_1200
( YP_007519706.1 )

two component transcriptional regulator

NC_020504
(Streptomyces davawensis JCM 4913)

2e-34

192) Strvi_7700
( YP_004817316.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-34

193) SHJG_3644
( YP_006244789.1 )

two component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

2e-34

194) SHJGH_3409
( YP_007692408.1 )

two component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

2e-34

195) AORI_0108
( YP_008009100.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-34

196) Sros_4577
( YP_003340182.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

2e-34

197) PFREUD_01630
( YP_003687129.1 )

LuxR family transcriptional regulator

NC_014215
(Propionibacterium freudenreichii CIRM-BIA1)

2e-34

198) Strvi_7824
( YP_004817435.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-34

199) SC3A4.14c
( NP_631149.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-34

200) HMPREF9154_1891
( YP_006512111.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

2e-34

201) L083_8058
( YP_007956048.1 )

two component system response regulator

NC_021191
(Actinoplanes sp. N902-109)

2e-34

202) BLASA_1061
( YP_005328046.1 )

two-component response regulator

NC_016943
(Blastococcus saxobsidens DD2)

2e-34

203) Kfla_2340
( YP_003380215.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-34

204) VAB18032_14620
( YP_004404636.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

2e-34

205) VAB18032_18120
( YP_004405326.1 )

two component system response regulator

NC_015434
(Verrucosispora maris AB-18-032)

2e-34

206) Cwoe_4855
( YP_003396642.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

3e-34

207) SC5F7.36c
( NP_626418.1 )

two component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

3e-34

208) SACTE_1869
( YP_004802316.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

3e-34

209) Sros_4672
( YP_003340268.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

4e-34

210) SAV_931
( NP_822106.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

4e-34

211) B005_3671
( YP_006642737.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

5e-34

212) O3I_021450
( YP_006809223.1 )

LuxR family transcriptional regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

5e-34

213) Jden_1873
( YP_003161819.1 )

two component transcriptional regulator, LuxR family

NC_013174
(Jonesia denitrificans DSM 20603)

5e-34

214) SC1A6.11
( NP_630508.1 )

two-component system regulatory protein

NC_003888
(Streptomyces coelicolor A3(2))

5e-34

215) yxjL
( YP_004919845.1 )

transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

6e-34

216) SCATT_p11860
( YP_006051332.1 )

two-component system regulator

NC_017585
(Streptomyces cattleya NRRL 8057)

6e-34

217) SAV_1464
( NP_822639.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

6e-34

218) PFREUD_15220
( YP_003688446.1 )

two-component response regulator

NC_014215
(Propionibacterium freudenreichii CIRM-BIA1)

6e-34

219) B737_0112
( YP_008456445.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

6e-34

220) RAM_00575
( YP_005528067.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

6e-34

221) AMES_0111
( YP_006546593.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

6e-34

222) AMED_0114
( YP_003762340.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

6e-34

223) HMPREF9154_0505
( YP_006510831.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

6e-34

224) Anacy_4188
( YP_007158464.1 )

two component transcriptional regulator, LuxR family

NC_019771
(Anabaena cylindrica PCC 7122)

7e-34

225) Namu_4067
( YP_003203346.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

1e-33

226) Krad_1998
( YP_001361747.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

1e-33

227) BN6_31720
( YP_007037350.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

1e-33

228) Caci_7658
( YP_003118323.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-33

229) Celf_3516
( YP_004455014.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

1e-33

230) SAV_4535
( NP_825712.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

1e-33

231) Franean1_7117
( YP_001511345.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

1e-33

232) PACID_01460
( YP_006979352.1 )

Transcriptional regulator, LuxR family

NC_019395
(Propionibacterium acidipropionici ATCC 4875)

1e-33

233) Svir_26840
( YP_003134495.1 )

response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein

NC_013159
(Saccharomonospora viridis DSM 43017)

7e-34

234) Nos7524_3973
( YP_007077343.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019684
(Nostoc sp. PCC 7524)

7e-34

235) ACPL_5273
( YP_006268228.1 )

yfiK-like transcriptional regulatory protein

NC_017803
(Actinoplanes sp. SE50/110)

8e-34

236) AORI_0014
( YP_008009006.1 )

LuxR family two component transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

9e-34

237) Ccur_01320
( YP_003150547.1 )

response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein

NC_013170
(Cryptobacterium curtum DSM 15641)

9e-34

238) Achl_3912
( YP_002489953.1 )

LuxR family transcriptional regulator

NC_011886
(Arthrobacter chlorophenolicus A6)

9e-34

239) RSal33209_0854
( YP_001624012.1 )

two-component response regulator

NC_010168
(Renibacterium salmoninarum ATCC 33209)

9e-34

240) Krad_2599
( YP_001362336.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

1e-33

241) SGR_6998
( YP_001828508.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

1e-33

242) Bcav_4002
( YP_002884005.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-33

243) AMIS_24030
( YP_005462139.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-33

244) O5Y_14380
( YP_008453452.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

2e-33

245) RER_31330
( YP_002766580.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

2e-33

246) PAZ_c21160
( YP_005943271.1 )

putative two-component response regulator

NC_017534
(Propionibacterium acnes 266)

2e-33

247) TIB1ST10_10315
( YP_005945612.1 )

putative two-component response regulator

NC_017535
(Propionibacterium acnes 6609)

2e-33

248) PAC1_10345
( YP_006852045.1 )

two-component response regulator

NC_018707
(Propionibacterium acnes C1)

2e-33

249) PPA2028
( YP_056700.1 )

two-component response regulator

NC_006085
(Propionibacterium acnes KPA171202)

2e-33

250) TIA2EST22_09925
( YP_004947471.1 )

two-component response regulator

NC_016512
(Propionibacterium acnes P.acn17)

2e-33

251) TIA2EST36_09905
( YP_004945230.1 )

two-component response regulator

NC_016511
(Propionibacterium acnes P.acn31)

2e-33

252) TIA2EST2_09860
( YP_004956403.1 )

two-component response regulator

NC_016516
(Propionibacterium acnes P.acn33)

2e-33

253) XNR_4521
( YP_007747847.1 )

LuxR family two component system response regulator

NC_020990
(Streptomyces albus J1074)

2e-33

254) Xcel_1633
( YP_003326214.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

3e-33

255) KSE_65720
( YP_004908287.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

3e-33

256) AORI_4123
( YP_008013111.1 )

two-component system regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

3e-33

257) PACID_14200
( YP_006980592.1 )

Transcriptional regulator, LuxR family

NC_019395
(Propionibacterium acidipropionici ATCC 4875)

3e-33

258) SCAB_42071
( YP_003489826.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

3e-33

259) Amir_2737
( YP_003100517.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-33

260) REQ_31570
( YP_004007838.1 )

LuxR family transcriptional regulator

NC_014659
(Rhodococcus equi 103S)

3e-33

261) AMIS_26860
( YP_005462422.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

3e-33

262) TIIST44_02915
( YP_005985112.1 )

putative two-component response regulator

NC_017550
(Propionibacterium acnes ATCC 11828)

3e-33

263) AMIS_34790
( YP_005463215.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

3e-33

264) SFUL_3263
( YP_007932082.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

3e-33

265) SACTE_3070
( YP_004803478.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

3e-33

266) SCAB_14341
( YP_003487152.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

4e-33

267) Strvi_7243
( YP_004816889.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

4e-33

268) Elen_2822
( YP_003183158.1 )

LuxR family two component transcriptional regulator

NC_013204
(Eggerthella lenta DSM 2243)

4e-33

269) YM304_05390
( YP_007562791.1 )

putative NarL family two-component response regulator

NC_020520
(Ilumatobacter coccineum YM16-304)

4e-33

270) AORI_7243
( YP_008016228.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

4e-33

271) AORI_8006
( YP_008016990.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

4e-33

272) SBI_02186
( YP_004960438.1 )

putative response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

4e-33

273) PAGK_1940
( YP_007888246.1 )

putative two-component response regulator

NC_021085
(Propionibacterium acnes HL096PA1)

4e-33

274) HMPREF0675_5093
( YP_003582219.1 )

transcriptional regulator, LuxR family

NC_014039
(Propionibacterium acnes SK137)

4e-33

275) Sros_1684
( YP_003337418.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

4e-33

276) SCH10.18c
( NP_627834.1 )

two-component system regulator

NC_003888
(Streptomyces coelicolor A3(2))

5e-33

277) Strvi_8078
( YP_004817681.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

5e-33

278) Kfla_0630
( YP_003378550.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

5e-33

279) PALO_00860
( YP_007870164.1 )

two-component response regulator

NC_021064
(Propionibacterium avidum 44067)

5e-33

280) Npun_R2420
( YP_001865924.1 )

LuxR family transcriptional regulator

NC_010628
(Nostoc punctiforme PCC 73102)

5e-33

281) Xcel_0759
( YP_003325356.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

6e-33

282) Kfla_5761
( YP_003383565.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

6e-33

283) nfa31210
( YP_119332.1 )

two-component system response regulator

NC_006361
(Nocardia farcinica IFM 10152)

1e-32

284) Amir_0513
( YP_003098326.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

1e-32

285) RER_21420
( YP_002765589.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

1e-32

286) SCI11.34
( NP_626018.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

6e-33

287) SVEN_1521
( YP_006877067.1 )

two-component system response regulator

NC_018750
(Streptomyces venezuelae ATCC 10712)

6e-33

288) SBI_07804
( YP_004966055.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

7e-33

289) BN6_71380
( YP_007041246.1 )

Two-component system, response regulator of the LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

7e-33

290) yxjL
( YP_004914714.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

7e-33

291) SCATT_52150
( YP_006057108.1 )

two-component system regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

7e-33

292) Sros_1910
( YP_003337641.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-33

293) B005_0736
( YP_006639864.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

8e-33

294) Riv7116_3100
( YP_007056122.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019678
(Rivularia sp. PCC 7116)

8e-33

295) Sros_4468
( YP_003340078.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-33

296) O5Y_10230
( YP_008452634.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

9e-33

297) AARI_14220
( YP_003916604.1 )

two-component system response regulator

NC_014550
(Arthrobacter arilaitensis Re117)

9e-33

298) B005_4088
( YP_006643149.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

1e-32

299) FraEuI1c_6591
( YP_004020435.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

1e-32

300) Cal7507_2351
( YP_007065616.1 )

LuxR family two component transcriptional regulator

NC_019682
(Calothrix sp. PCC 7507)

1e-32

301) Caci_7105
( YP_003117776.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-32

302) absA2; SCE8.19
( NP_627440.1 )

two component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-32

303) XNR_3205
( YP_007746551.1 )

LuxR family two-component system response regulator

NC_020990
(Streptomyces albus J1074)

1e-32

304) Sked_36930
( YP_003316413.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

2e-32

305) SFUL_1734
( YP_007930587.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

2e-32

306) Franean1_3727
( YP_001508028.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

2e-32

307) Amir_4051
( YP_003101758.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

2e-32

308) Celf_0427
( YP_004451957.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

2e-32

309) Snas_0645
( YP_003509451.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

2e-32

310) TIIST44_04900
( YP_005985490.1 )

LuxR family transcriptional regulator

NC_017550
(Propionibacterium acnes ATCC 11828)

2e-32

311) SVEN_3239
( YP_006878784.1 )

putative two-component system response regulator

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-32

312) NOCYR_3286
( YP_005264687.1 )

two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

2e-32

313) Noca_1318
( YP_922519.1 )

response regulator receiver

NC_008699
(Nocardioides sp. JS614)

2e-32

314) B446_20085
( YP_008387640.1 )

two-component system regulator

NC_021985
(Streptomyces collinus Tu 365)

2e-32

315) Sfla_4659
( YP_004925577.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

3e-32

316) F750_2025
( YP_007859004.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

3e-32

317) Amir_6235
( YP_003103885.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-32

318) AORI_7698
( YP_008016683.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

3e-32

319) B737_2814
( YP_008459146.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

3e-32

320) RAM_14440
( YP_005530833.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

3e-32

321) AMES_2813
( YP_006549294.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

3e-32

322) AMED_2842
( YP_003765038.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

3e-32

323) Kfla_2678
( YP_003380543.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

3e-32

324) O3I_023090
( YP_006809547.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

3e-32

325) B446_20770
( YP_008387777.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

3e-32

326) Kfla_1135
( YP_003379038.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

4e-32

327) PFREUD_21980
( YP_003689111.1 )

two component transcriptional regulator, LuxR family

NC_014215
(Propionibacterium freudenreichii CIRM-BIA1)

4e-32

328) ROP_65310
( YP_002783723.1 )

NarL family two-component response regulator

NC_012522
(Rhodococcus opacus B4)

4e-32

329) Sros_5905
( YP_003341383.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

4e-32

330) SGR_3409
( YP_001824921.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

4e-32

331) AMIS_27430
( YP_005462479.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

5e-32

332) Celgi_1062
( YP_004600149.1 )

two component transcriptional regulator, LuxR family

NC_015671
(Cellvibrio gilvus ATCC 13127)

5e-32

333) Ksed_04500
( YP_003148288.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_013169
(Kytococcus sedentarius DSM 20547)

5e-32

334) Aazo_0236
( YP_003719973.1 )

LuxR family two component transcriptional regulator

NC_014248
(Nostoc azollae 0708)

5e-32

335) O5Y_11195
( YP_008452824.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

6e-32

336) RER_23880
( YP_002765835.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

6e-32

337) Snas_3359
( YP_003512117.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

6e-32

338) Snas_5595
( YP_003514318.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

6e-32

339) L083_6493
( YP_007954483.1 )

response regulator receiver protein

NC_021191
(Actinoplanes sp. N902-109)

7e-32

340) Tfu_0767
( YP_288828.1 )

LuxR family transcriptional regulator

NC_007333
(Thermobifida fusca YX)

7e-32

341) Cfla_0278
( YP_003635396.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

7e-32

342) FraEuI1c_2868
( YP_004016764.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

7e-32

343) FraEuI1c_6816
( YP_004020655.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

7e-32

344) SBI_01649
( YP_004959901.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

7e-32

345) O5Y_13300
( YP_008453236.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

8e-32

346) AORI_0941
( YP_008009933.1 )

response regulator receiver protein

NC_021252
(Amycolatopsis orientalis HCCB10007)

8e-32

347) PAZ_c00560
( YP_005941300.1 )

two-component response regulator

NC_017534
(Propionibacterium acnes 266)

8e-32

348) TIB1ST10_00265
( YP_005943646.1 )

LuxR family transcriptional regulator

NC_017535
(Propionibacterium acnes 6609)

8e-32

349) PAC1_00265
( YP_006850064.1 )

LuxR family transcriptional regulator

NC_018707
(Propionibacterium acnes C1)

8e-32

350) PAGK_0051
( YP_007886422.1 )

two-component response regulator

NC_021085
(Propionibacterium acnes HL096PA1)

8e-32

351) PPA0055
( YP_054772.1 )

two-component response regulator

NC_006085
(Propionibacterium acnes KPA171202)

8e-32

352) TIA2EST22_00260
( YP_004945590.1 )

transcriptional regulator, LuxR family protein

NC_016512
(Propionibacterium acnes P.acn17)

8e-32

353) TIA2EST36_00270
( YP_004943346.1 )

transcriptional regulator, LuxR family protein

NC_016511
(Propionibacterium acnes P.acn31)

8e-32

354) TIA2EST2_00255
( YP_004954529.1 )

transcriptional regulator, LuxR family protein

NC_016516
(Propionibacterium acnes P.acn33)

8e-32

355) HMPREF0675_3055
( YP_003580247.1 )

transcriptional regulator, LuxR family

NC_014039
(Propionibacterium acnes SK137)

8e-32

356) BN159_4044
( YP_007522550.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

9e-32

357) AAur_4172
( YP_949838.1 )

two-component system response regulator

NC_008711
(Arthrobacter aurescens TC1)

9e-32

358) ARUE_c43020
( YP_006664211.1 )

response regulator containing a CheY-like signal receiver domain and LuxR-C-like HTH DNA-binding domain

NC_018531
(Arthrobacter sp. Rue61a)

9e-32

359) AMIS_41450
( YP_005463881.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-31

360) B737_7125
( YP_008463455.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-31

361) RAM_37160
( YP_005535356.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-31

362) AMES_7125
( YP_006553604.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-31

363) AMED_7234
( YP_003769353.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-31

364) AORI_6649
( YP_008015635.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

1e-31

365) Kfla_1312
( YP_003379214.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

1e-31

366) Caci_7415
( YP_003118082.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-31

367) Npun_F1776
( YP_001865381.1 )

LuxR family transcriptional regulator

NC_010628
(Nostoc punctiforme PCC 73102)

1e-31

368) Rxyl_0160
( YP_642950.1 )

two component LuxR family transcriptional regulator

NC_008148
(Rubrobacter xylanophilus DSM 9941)

1e-31

369) SCE126.07c
( NP_627596.1 )

two component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-31

370) KSE_24870
( YP_004904257.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-31

371) RER_29160
( YP_002766363.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

2e-31

372) AORI_2824
( YP_008011814.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-31

373) RHA1_ro06478
( YP_706411.1 )

response regulator, two-component system

NC_008268
(Rhodococcus jostii RHA1)

2e-31

374) BN6_54360
( YP_007039568.1 )

Transcriptional regulator, LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-31

375) AORI_4764
( YP_008013751.1 )

LuxR family transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-31

376) Sfla_3558
( YP_004924495.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

2e-31

377) F750_3166
( YP_007860122.1 )

putative two-component system response regulator

NC_021055
(Streptomyces sp. PAMC26508)

2e-31

378) Strvi_5464
( YP_004815267.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-31

379) SAV_4681
( NP_825858.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

2e-31

380) FraEuI1c_4488
( YP_004018351.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

2e-31

381) Caci_6049
( YP_003116747.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

3e-31

382) SFUL_5079
( YP_007933858.1 )

Two-component system regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

3e-31

383) Caci_6963
( YP_003117634.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

3e-31

384) Chro_3053
( YP_007092389.1 )

LuxR family two component transcriptional regulator

NC_019695
(Chroococcidiopsis thermalis PCC 7203)

3e-31

385) RoseRS_3421
( YP_001277729.1 )

two component LuxR family transcriptional regulator

NC_009523
(Roseiflexus sp. RS-1)

3e-31

386) SBI_00409
( YP_004958661.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-31

387) SHJG_1104
( YP_006242254.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-31

388) SHJGH_0938
( YP_007689938.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-31

389) Sros_5619
( YP_003341114.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

4e-31

390) Snas_0541
( YP_003509348.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-31

391) Rcas_1142
( YP_001431257.1 )

two component LuxR family transcriptional regulator

NC_009767
(Roseiflexus castenholzii DSM 13941)

4e-31

392) Tbis_0951
( YP_003651567.1 )

LuxR family two component transcriptional regulator

NC_014165
(Thermobispora bispora DSM 43833)

4e-31

393) SHJG_5317
( YP_006246458.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

4e-31

394) SHJGH_5081
( YP_007694078.1 )

putative two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

4e-31

395) ACPL_4239
( YP_006267202.1 )

transcriptional regulatory protein degU

NC_017803
(Actinoplanes sp. SE50/110)

5e-31

396) Bfae_11600
( YP_003154596.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_013172
(Brachybacterium faecium DSM 4810)

5e-31

397) CMM_1271
( YP_001222012.1 )

putative two-component system, response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

5e-31

398) AORI_1270
( YP_008010262.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

5e-31

399) SACE_0956
( YP_001103214.1 )

two-component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

5e-31

400) AMIS_65220
( YP_005466258.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

5e-31

401) NIES39_O03890
( YP_005072174.1 )

two-component response regulator

NC_016640
(Arthrospira platensis NIES-39)

5e-31

402) SACE_7063
( YP_001109149.1 )

two component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

5e-31

403) BN6_23870
( YP_007036577.1 )

Response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

5e-31

404) SCAB_42051
( YP_003489824.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

5e-31

405) BLASA_1392
( YP_005328360.1 )

LuxR family two component transcriptional regulator

NC_016943
(Blastococcus saxobsidens DD2)

6e-31

406) SCH10.31c
( NP_627847.1 )

two-component system regulator

NC_003888
(Streptomyces coelicolor A3(2))

6e-31

407) Psed_6227
( YP_004336181.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

6e-31

408) Strop_1796
( YP_001158637.1 )

response regulator receiver

NC_009380
(Salinispora tropica CNB-440)

6e-31

409) VAB18032_10190
( YP_004403756.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

6e-31

410) AORI_7016
( YP_008016001.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

6e-31

411) Caci_8412
( YP_003119076.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

6e-31

412) KSE_33970
( YP_004905161.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

6e-31

413) Kfla_3136
( YP_003380998.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

6e-31

414) CMN_01241
( YP_007685528.1 )

two-component system, response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

7e-31

415) AMIS_53890
( YP_005465125.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-30

416) GPOL_c05490
( YP_005280984.1 )

putative two component LuxR family transcriptional regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

1e-30

417) BLASA_1050
( YP_005328035.1 )

LuxR family two component transcriptional regulator

NC_016943
(Blastococcus saxobsidens DD2)

1e-30

418) Krad_4263
( YP_001363990.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

1e-30

419) liaR
( YP_006365018.1 )

two component transcriptional regulator liaR

NC_017955
(Modestobacter marinus BC501)

1e-30

420) Sked_29940
( YP_003315729.1 )

two component transcriptional regulator, LuxR family

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-30

421) SCAB_27841
( YP_003488444.1 )

two-component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

1e-30

422) AARI_07110
( YP_003915902.1 )

two-component system response regulator

NC_014550
(Arthrobacter arilaitensis Re117)

1e-30

423) Bfae_25060
( YP_003155881.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_013172
(Brachybacterium faecium DSM 4810)

1e-30

424) SBI_04815
( YP_004963066.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-30

425) Xcel_0239
( YP_003324836.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

1e-30

426) FraEuI1c_2398
( YP_004016307.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

7e-31

427) Sros_3519
( YP_003339198.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-31

428) SCAB_67211
( YP_003492260.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

9e-31

429) Franean1_3185
( YP_001507499.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

9e-31

430) Sked_03540
( YP_003313155.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

9e-31

431) Strvi_8953
( YP_004818533.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

9e-31

432) Bcav_0102
( YP_002880129.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-30

433) BN6_00630
( YP_007034268.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-30

434) Noca_4902
( YP_919347.1 )

response regulator receiver

NC_008697
(Nocardioides sp. JS614)

2e-30

435) SFUL_5249
( YP_007934027.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

2e-30

436) AS9A_2056
( YP_004493305.1 )

putative NarL family two-component response regulator

NC_015564
(Amycolicicoccus subflavus DQS3-9A1)

2e-30

437) Svir_39200
( YP_003135689.1 )

response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein

NC_013159
(Saccharomonospora viridis DSM 43017)

2e-30

438) Snas_1740
( YP_003510531.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

2e-30

439) Tcur_2302
( YP_003299906.1 )

LuxR family two component transcriptional regulator

NC_013510
(Thermomonospora curvata DSM 43183)

2e-30

440) L083_4826
( YP_007952816.1 )

two component LuxR family transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

2e-30

441) MLP_39710
( YP_004574388.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

2e-30

442) STH921
( YP_074750.1 )

two-component response regulator

NC_006177
(Symbiobacterium thermophilum IAM 14863)

2e-30

443) Caci_0175
( YP_003110971.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

3e-30

444) liaR
( YP_004920491.1 )

transcriptional regulatory protein liaR

NC_016113
(Streptomyces cattleya NRRL 8057)

3e-30

445) BN159_4195
( YP_007522701.1 )

LuxR family transcriptional regulator

NC_020504
(Streptomyces davawensis JCM 4913)

3e-30

446) AORI_6959
( YP_008015944.1 )

two component transcriptional regulator, LuxR family

NC_021252
(Amycolatopsis orientalis HCCB10007)

3e-30

447) B737_2742
( YP_008459074.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

3e-30

448) AMES_2741
( YP_006549222.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

3e-30

449) AMED_2769
( YP_003764966.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

3e-30

450) Noca_4896
( YP_919341.1 )

response regulator receiver

NC_008697
(Nocardioides sp. JS614)

3e-30

451) BN159_4207
( YP_007522713.1 )

two-component system regulator

NC_020504
(Streptomyces davawensis JCM 4913)

3e-30

452) XCR_1350
( YP_005636368.1 )

two-component system response regulator protein

NC_017271
(Xanthomonas campestris 756C)

3e-30

453) XC_3117
( YP_244183.1 )

two-component system regulatory protein

NC_007086
(Xanthomonas campestris 8004)

3e-30

454) XCC1128
( NP_636503.1 )

two-component system regulatory protein

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-30

455) xccb100_3213
( YP_001904618.1 )

Two-component system regulatory protein

NC_010688
(Xanthomonas campestris B100)

3e-30

456) RAM_14075
( YP_005530760.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

4e-30

457) Snas_4575
( YP_003513312.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-30

458) SACTE_4648
( YP_004805015.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

4e-30

459) B737_5425
( YP_008461757.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

4e-30

460) RAM_27995
( YP_005533533.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

4e-30

461) AMES_5425
( YP_006551906.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

4e-30

462) AMED_5492
( YP_003767652.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

4e-30

463) Cwoe_4937
( YP_003396723.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

4e-30

464) XNR_3470
( YP_007746815.1 )

LuxR family two-component system response regulator

NC_020990
(Streptomyces albus J1074)

4e-30

465) HMPREF9154_2484
( YP_006512664.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

4e-30

466) SACTE_1590
( YP_004802046.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

5e-30

467) Snas_1903
( YP_003510692.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

5e-30

468) Caci_6980
( YP_003117651.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

5e-30

469) ROP_02670
( YP_002777459.1 )

NarL family two-component response regulator

NC_012522
(Rhodococcus opacus B4)

1e-29

470) Sros_8243
( YP_003343635.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

1e-29

471) CMS_2283
( YP_001710951.1 )

two component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

1e-29

472) Celgi_0782
( YP_004599869.1 )

two component transcriptional regulator, LuxR family

NC_015671
(Cellvibrio gilvus ATCC 13127)

1e-29

473) Strvi_8885
( YP_004818466.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

1e-29

474) AS9A_3822
( YP_004495060.1 )

two component system response regulator

NC_015564
(Amycolicicoccus subflavus DQS3-9A1)

1e-29

475) O5Y_04650
( YP_008451525.1 )

NarL family two-component response regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

1e-29

476) RER_10300
( YP_002764477.1 )

putative NarL family two-component response regulator

NC_012490
(Rhodococcus erythropolis PR4)

1e-29

477) SCATT_p05290
( YP_006050674.1 )

two component transcriptional regulator, LuxR family

NC_017585
(Streptomyces cattleya NRRL 8057)

7e-30

478) nfa42530
( YP_120466.1 )

two-component system response regulator

NC_006361
(Nocardia farcinica IFM 10152)

7e-30

479) Caci_7843
( YP_003118508.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

7e-30

480) Kfla_4480
( YP_003382309.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

7e-30

481) Micau_2264
( YP_003835384.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

8e-30

482) ML5_2376
( YP_004082049.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

8e-30

483) RHA1_ro00150
( YP_700144.1 )

response regulator, two-component system

NC_008268
(Rhodococcus jostii RHA1)

8e-30

484) Sros_6211
( YP_003341683.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-30

485) Kfla_4492
( YP_003382321.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

8e-30

486) Namu_0651
( YP_003200055.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

8e-30

487) Cwoe_3988
( YP_003395780.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

8e-30

488) AM1_0515
( YP_001514881.1 )

two-component LuxR family transcriptional regulator

NC_009925
(Acaryochloris marina MBIC11017)

8e-30

489) BLASA_0884
( YP_005327874.1 )

Two component transcriptional regulatory protein

NC_016943
(Blastococcus saxobsidens DD2)

9e-30

490) Sros_7301
( YP_003342731.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

9e-30

491) XNR_0561
( YP_007743966.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_020990
(Streptomyces albus J1074)

1e-29

492) Isova_0632
( YP_004541313.1 )

two component transcriptional regulator, LuxR family

NC_015588
(Isoptericola variabilis 225)

1e-29

493) Krad_2537
( YP_001362276.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

2e-29

494) O3I_026495
( YP_006810222.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

2e-29

495) Bcav_1049
( YP_002881072.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-29

496) Kfla_4830
( YP_003382646.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-29

497) SACE_1225
( YP_001103476.1 )

two-component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

2e-29

498) SVEN_3401
( YP_006878946.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-29

499) SGR_3294
( YP_001824806.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

2e-29

500) Tcur_4491
( YP_003302056.1 )

LuxR family two component transcriptional regulator

NC_013510
(Thermomonospora curvata DSM 43183)

2e-29

501) BN6_50110
( YP_007039152.1 )

Two-component system, response regulator of the LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-29

502) AMIS_66170
( YP_005466353.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-29

503) SCH10.16c
( NP_627832.1 )

two-component system regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-29

504) ACPL_6885
( YP_006269835.1 )

Nitrate/nitrite response regulator protein narP

NC_017803
(Actinoplanes sp. SE50/110)

2e-29

505) SACTE_0675
( YP_004801150.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

2e-29

506) SCAB_43741
( YP_003489983.1 )

two component response regulator

NC_013929
(Streptomyces scabiei 87.22)

2e-29

507) Nos7107_3580
( YP_007051298.1 )

LuxR family two component transcriptional regulator

NC_019676
(Nostoc sp. PCC 7107)

2e-29

508) AMIS_79770
( YP_005467713.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-29

509) FRAAL0524
( YP_710808.1 )

protein-glutamate methylesterase

NC_008278
(Frankia alni ACN14a)

3e-29

510) Isova_2915
( YP_004543494.1 )

two component transcriptional regulator, LuxR family

NC_015588
(Isoptericola variabilis 225)

3e-29

511) SGR_2250
( YP_001823762.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

3e-29

512) AMIS_79550
( YP_005467691.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

3e-29

513) MLP_16340
( YP_004572051.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

3e-29

514) Caci_7812
( YP_003118477.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

3e-29

515) Cfla_2391
( YP_003637480.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

3e-29

516) Sros_4744
( YP_003340325.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-29

517) Xcel_1619
( YP_003326201.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

3e-29

518) REQ_33740
( YP_004008049.1 )

LuxR family transcriptional regulator

NC_014659
(Rhodococcus equi 103S)

3e-29

519) Sked_08490
( YP_003313634.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

3e-29

520) SAV_1988
( NP_823164.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

3e-29

521) F750_1047
( YP_007858042.1 )

putative two-component system response regulator

NC_021055
(Streptomyces sp. PAMC26508)

4e-29

522) O3I_027315
( YP_006810386.1 )

LuxR family two component transcriptional regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

4e-29

523) VAB18032_23605
( YP_004406419.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

4e-29

524) yxjL
( YP_004914365.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

4e-29

525) SCATT_48680
( YP_006056761.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

4e-29

526) Kfla_6941
( YP_003384729.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

4e-29

527) NOCYR_3983
( YP_005265378.1 )

putative two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

4e-29

528) yxjL
( YP_004919513.1 )

transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

4e-29

529) SCATT_p15210
( YP_006051667.1 )

two-component system response regulator

NC_017585
(Streptomyces cattleya NRRL 8057)

4e-29

530) Mic7113_6279
( YP_007125274.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019738
(Microcoleus sp. PCC 7113)

4e-29

531) Bcav_2822
( YP_002882829.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

4e-29

532) Haur_4778
( YP_001547537.1 )

LuxR family transcriptional regulator

NC_009972
(Herpetosiphon aurantiacus DSM 785)

4e-29

533) SCAB_10041
( YP_003486751.1 )

two-component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

4e-29

534) SAV_7071
( NP_828247.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

5e-29

535) AMIS_69820
( YP_005466718.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-28

536) yxjL
( YP_004920994.1 )

transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

1e-28

537) SCATT_p00120
( YP_006050158.1 )

response regulator receiver protein

NC_017585
(Streptomyces cattleya NRRL 8057)

1e-28

538) CMS_1730
( YP_001710438.1 )

two component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

5e-29

539) XNR_5271
( YP_007748590.1 )

LuxR family two component system response regulator

NC_020990
(Streptomyces albus J1074)

5e-29

540) SVEN_3470
( YP_006879015.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

6e-29

541) B005_2367
( YP_006641465.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

6e-29

542) Cfla_3337
( YP_003638415.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

6e-29

543) SCAB_88801
( YP_003494339.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

6e-29

544) B737_8799
( YP_008465127.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

6e-29

545) RAM_45825
( YP_005537087.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

6e-29

546) AMES_8798
( YP_006555275.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

6e-29

547) AMED_8933
( YP_003771026.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

6e-29

548) SBI_04389
( YP_004962640.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

6e-29

549) Tmar_1372
( YP_004102212.1 )

LuxR family transcriptional regulator

NC_014831
(Thermaerobacter marianensis DSM 12885)

6e-29

550) Sfla_5560
( YP_004926472.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

7e-29

551) Cfla_2842
( YP_003637925.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

7e-29

552) O3I_003085
( YP_006805554.1 )

LuxR family two component transcriptional regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

7e-29

553) SBI_08121
( YP_004966370.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

7e-29

554) yxjL
( YP_004919329.1 )

transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

8e-29

555) SCATT_p17130
( YP_006051859.1 )

two-component system response regulator

NC_017585
(Streptomyces cattleya NRRL 8057)

8e-29

556) BN159_7322
( YP_007525828.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

8e-29

557) Strvi_2207
( YP_004812217.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

8e-29

558) chiR
( YP_061872.1 )

two-component system regulatory protein

NC_006087
(Leifsonia xyli CTCB07)

9e-29

559) Osc7112_5589
( YP_007118228.1 )

two component transcriptional regulator, LuxR family

NC_019729
(Oscillatoria nigro-viridis PCC 7112)

9e-29

560) Snas_2469
( YP_003511245.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

9e-29

561) CMM_1573
( YP_001222315.1 )

putative two-component system, response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

1e-28

562) SVEN_5106
( YP_006880651.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

1e-28

563) Cwoe_0549
( YP_003392359.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

1e-28

564) Caci_0683
( YP_003111459.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-28

565) Isova_2431
( YP_004543036.1 )

two component transcriptional regulator, LuxR family

NC_015588
(Isoptericola variabilis 225)

1e-28

566) MLP_00470
( YP_004570464.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

1e-28

567) SFUL_3050
( YP_007931871.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

1e-28

568) CMN_01550
( YP_007685827.1 )

two-component system, response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

2e-28

569) Sros_3244
( YP_003338930.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

2e-28

570) L083_3878
( YP_007951868.1 )

response regulator receiver

NC_021191
(Actinoplanes sp. N902-109)

2e-28

571) Amir_2232
( YP_003100018.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

2e-28

572) HMPREF9154_0386
( YP_006510721.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

2e-28

573) liaR
( YP_008013184.1 )

two component LuxR family transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-28

574) Bfae_05830
( YP_003154039.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_013172
(Brachybacterium faecium DSM 4810)

2e-28

575) Franean1_6351
( YP_001510595.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

2e-28

576) ACPL_7236
( YP_006270184.1 )

Nitrate/nitrite response regulator protein narP

NC_017803
(Actinoplanes sp. SE50/110)

2e-28

577) SBI_03056
( YP_004961308.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-28

578) AMIS_26200
( YP_005462356.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-28

579) ACPL_6868
( YP_006269818.1 )

transcriptional regulatory protein degU

NC_017803
(Actinoplanes sp. SE50/110)

2e-28

580) AMIS_16670
( YP_005461403.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-28

581) tcsR4
( YP_002835364.1 )

two-component system response regulator

NC_012590
(Corynebacterium aurimucosum ATCC 700975)

2e-28

582) FraEuI1c_2245
( YP_004016154.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

2e-28

583) SHJG_5550
( YP_006246690.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

2e-28

584) SHJGH_5313
( YP_007694310.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

2e-28

585) Sare_1782
( YP_001536660.1 )

two component LuxR family transcriptional regulator

NC_009953
(Salinispora arenicola CNS-205)

3e-28

586) CMN_00361
( YP_007684690.1 )

two-component system, response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

3e-28

587) KSE_63120
( YP_004908026.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

3e-28

588) SHJG_2698
( YP_006243845.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-28

589) SHJGH_2462
( YP_007691462.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-28

590) BN6_36870
( YP_007037854.1 )

Two-component system, response regulator of the LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

3e-28

591) GPOL_c48160
( YP_005285178.1 )

putative two-component system response regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

3e-28

592) Krad_1981
( YP_001361731.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

3e-28

593) BN6_75050
( YP_007041603.1 )

hypothetical protein

NC_019673
(Saccharothrix espanaensis DSM 44229)

4e-28

594) B446_06600
( YP_008384955.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

4e-28

595) Krad_1350
( YP_001361102.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

4e-28

596) ML5_4977
( YP_004084601.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

4e-28

597) Namu_0480
( YP_003199888.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

4e-28

598) BN159_6638
( YP_007525144.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

4e-28

599) SAV_4454
( NP_825631.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

4e-28

600) Sros_0277
( YP_003336052.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

4e-28

601) Cylst_1808
( YP_007146747.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019757
(Cylindrospermum stagnale PCC 7417)

4e-28

602) Franean1_1652
( YP_001505996.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

5e-28

603) GPOL_c12550
( YP_005281679.1 )

two component transcriptional regulator, LuxR family

NC_016906
(Gordonia polyisoprenivorans VH2)

5e-28

604) AARI_04150
( YP_003915620.1 )

two-component system response regulator

NC_014550
(Arthrobacter arilaitensis Re117)

5e-28

605) DGo_CA0305
( YP_006259690.1 )

LuxR family two component transcriptional regulator

NC_017790
(Deinococcus gobiensis I-0)

5e-28

606) Psed_5706
( YP_004335686.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

6e-28

607) Cseg_2097
( YP_003593180.1 )

LuxR family two component transcriptional regulator

NC_014100
(Caulobacter segnis ATCC 21756)

6e-28

608) RHA1_ro05272
( YP_705211.1 )

response regulator, two-component system

NC_008268
(Rhodococcus jostii RHA1)

6e-28

609) AMIS_49310
( YP_005464667.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

7e-28

610) Ethha_1134
( YP_004091416.1 )

two component transcriptional regulator, LuxR family

NC_014828
(Ethanoligenens harbinense YUAN-3)

7e-28

611) CMN_02028
( YP_007686296.1 )

two-component system response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

7e-28

612) Cwoe_0676
( YP_003392485.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

7e-28

613) Cwoe_5656
( YP_003397435.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

1e-27

614) Snas_5265
( YP_003513992.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-27

615) SCAT_p1010
( YP_004920300.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016113
(Streptomyces cattleya NRRL 8057)

1e-27

616) SCATT_p07270
( YP_006050873.1 )

two component transcriptional regulator, LuxR family

NC_017585
(Streptomyces cattleya NRRL 8057)

1e-27

617) B737_0968
( YP_008457300.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-27

618) RAM_04945
( YP_005528938.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-27

619) AMES_0967
( YP_006547448.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-27

620) AMED_0971
( YP_003763191.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-27

621) Noca_3643
( YP_924830.1 )

two component LuxR family transcriptional regulator

NC_008699
(Nocardioides sp. JS614)

1e-27

622) SAV_5624
( NP_826801.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

1e-27

623) O3I_032020
( YP_006811327.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

1e-27

624) B737_3513
( YP_008459845.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-27

625) RAM_18060
( YP_005531555.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-27

626) AMES_3513
( YP_006549994.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-27

627) AMED_3552
( YP_003765740.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-27

628) SGR_4105
( YP_001825617.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

1e-27

629) CMM_2066
( YP_001222808.1 )

putative two-component system response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

7e-28

630) Strvi_3040
( YP_004813017.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

7e-28

631) Strvi_6965
( YP_004816617.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

8e-28

632) Tbis_1846
( YP_003652451.1 )

LuxR family two component transcriptional regulator

NC_014165
(Thermobispora bispora DSM 43833)

8e-28

633) FraEuI1c_2558
( YP_004016462.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

9e-28

634) DSC_06110
( YP_004929914.1 )

two-component system regulatory protein

NC_016147
(Pseudoxanthomonas spadix BD-a59)

9e-28

635) BN6_29950
( YP_007037175.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

1e-27

636) B737_8329
( YP_008464658.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

2e-27

637) B737_9136
( YP_008465463.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

2e-27

638) RAM_43415
( YP_005536607.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

2e-27

639) RAM_47550
( YP_005537432.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

2e-27

640) AMES_8328
( YP_006554806.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

2e-27

641) AMES_9135
( YP_006555611.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

2e-27

642) AMED_8457
( YP_003770555.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

2e-27

643) AMED_9272
( YP_003771362.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

2e-27

644) AS9A_4410
( YP_004495643.1 )

Two component LuxR family transcriptional regulator

NC_015564
(Amycolicicoccus subflavus DQS3-9A1)

2e-27

645) Bcav_3541
( YP_002883545.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-27

646) Mvan_5522
( YP_956294.1 )

two component LuxR family transcriptional regulator

NC_008726
(Mycobacterium vanbaalenii PYR-1)

2e-27

647) SBI_05877
( YP_004964128.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-27

648) Deipr_0158
( YP_004254948.1 )

two component transcriptional regulator, LuxR family

NC_015161
(Deinococcus proteolyticus MRP)

2e-27

649) PALO_10285
( YP_007872015.1 )

LuxR family transcriptional regulator

NC_021064
(Propionibacterium avidum 44067)

2e-27

650) SACE_1660
( YP_001103904.1 )

two component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

2e-27

651) ACPL_6207
( YP_006269160.1 )

Response regulator gacA

NC_017803
(Actinoplanes sp. SE50/110)

3e-27

652) AORI_8019
( YP_008017003.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

3e-27

653) Strvi_8942
( YP_004818523.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-27

654) SCAB_39621
( YP_003489593.1 )

two component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

3e-27

655) Caci_8900
( YP_003119554.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

3e-27

656) Amir_4260
( YP_003101961.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

4e-27

657) MTES_0211
( YP_004223055.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

4e-27

658) MODMU_0226
( YP_006364194.1 )

two-component signal transduction response regulator

NC_017955
(Modestobacter marinus BC501)

4e-27

659) CMS_2124
( YP_001710811.1 )

two-component response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

4e-27

660) Snas_0607
( YP_003509414.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-27

661) SAV_2438
( NP_823614.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

4e-27

662) Amir_4001
( YP_003101711.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

4e-27

663) Cfla_0857
( YP_003635966.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

5e-27

664) Sfla_3481
( YP_004924418.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

5e-27

665) SGR_1854
( YP_001823366.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

5e-27

666) F750_3250
( YP_007860203.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

5e-27

667) SACTE_4995
( YP_004805360.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

5e-27

668) Noca_2635
( YP_923825.1 )

response regulator receiver

NC_008699
(Nocardioides sp. JS614)

6e-27

669) Sros_8800
( YP_003344178.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

6e-27

670) Xcel_2601
( YP_003327173.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

6e-27

671) L083_6108
( YP_007954098.1 )

two-component system response regulator

NC_021191
(Actinoplanes sp. N902-109)

1e-26

672) BN159_3034
( YP_007521540.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

1e-26

673) Cwoe_2472
( YP_003394269.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

1e-26

674) Snas_3676
( YP_003512426.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-26

675) Gobs_1030
( YP_003408162.1 )

two component LuxR family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

1e-26

676) Snas_0178
( YP_003508991.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-26

677) SBI_05157
( YP_004963408.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-26

678) VAB18032_22885
( YP_004406277.1 )

LuxR family two component transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

1e-26

679) Snas_2557
( YP_003511330.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-26

680) MLP_38530
( YP_004574270.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

1e-26

681) AORI_1695
( YP_008010686.1 )

two component transcriptional regulator, LuxR family

NC_021252
(Amycolatopsis orientalis HCCB10007)

6e-27

682) ACPL_6805
( YP_006269755.1 )

yhcZ-like transcriptional regulatory protein

NC_017803
(Actinoplanes sp. SE50/110)

8e-27

683) chiR
( NP_824053.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

8e-27

684) Snas_1960
( YP_003510749.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

8e-27

685) Cha6605_5393
( YP_007099807.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019697
(Chamaesiphon minutus PCC 6605)

8e-27

686) STAUR_6623
( YP_003956207.1 )

two-component system, regulatory protein

NC_014623
(Stigmatella aurantiaca DW4/3-1)

8e-27

687) AS9A_3081
( YP_004494326.1 )

two component LuxR familytranscriptional regulator

NC_015564
(Amycolicicoccus subflavus DQS3-9A1)

8e-27

688) GPOL_c03880
( YP_005280825.1 )

putative two component transcriptional regulator, LuxR family

NC_016906
(Gordonia polyisoprenivorans VH2)

9e-27

689) BN6_40820
( YP_007038242.1 )

Two-component system, response regulator of the LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

9e-27

690) SBI_04470
( YP_004962721.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

9e-27

691) CMM_1242
( YP_001221983.1 )

putative two-component system, response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

2e-26

692) yxjL
( YP_005330349.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016943
(Blastococcus saxobsidens DD2)

2e-26

693) MLP_51320
( YP_004575549.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

2e-26

694) ACPL_2513
( YP_006265476.1 )

transcriptional regulatory protein degU

NC_017803
(Actinoplanes sp. SE50/110)

2e-26

695) O3I_029550
( YP_006810833.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

3e-26

696) MTES_1795
( YP_004224639.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

3e-26

697) Asphe3_39540
( YP_004243176.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

3e-26

698) Sros_0074
( YP_003335874.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-26

699) Amir_2010
( YP_003099804.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-26

700) KTR9_3279
( YP_006670070.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_018581
(Gordonia sp. KTR9)

3e-26

701) MycrhN_3651
( YP_005001384.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016604
(Mycobacterium rhodesiae NBB3)

3e-26

702) Snas_5262
( YP_003513989.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

3e-26

703) MODMU_3752
( YP_006367636.1 )

two-component response regulator

NC_017955
(Modestobacter marinus BC501)

4e-26

704) ACPL_3849
( YP_006266812.1 )

Response regulator gacA

NC_017803
(Actinoplanes sp. SE50/110)

4e-26

705) Caci_6705
( YP_003117392.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

4e-26

706) Celf_3679
( YP_004455173.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

4e-26

707) Kfla_2450
( YP_003380323.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

4e-26

708) Snas_3639
( YP_003512390.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-26

709) Gbro_2730
( YP_003273841.1 )

response regulator receiver

NC_013441
(Gordonia bronchialis DSM 43247)

5e-26

710) ACPL_1915
( YP_006264880.1 )

Transcriptional regulatory protein liaR

NC_017803
(Actinoplanes sp. SE50/110)

5e-26

711) B737_1272
( YP_008457603.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

5e-26

712) RAM_06485
( YP_005529246.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

5e-26

713) AMES_1271
( YP_006547751.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

5e-26

714) AMED_1278
( YP_003763494.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

5e-26

715) Mesil_1051
( YP_003684464.1 )

LuxR family two component transcriptional regulator

NC_014212
(Meiothermus silvanus DSM 9946)

5e-26

716) Mlut_21900
( YP_002958212.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_012803
(Micrococcus luteus NCTC 2665)

6e-26

717) liaR
( YP_004912196.1 )

Transcriptional regulatory protein liaR

NC_016111
(Streptomyces cattleya NRRL 8057)

6e-26

718) SCATT_26700
( YP_006054563.1 )

two-component system regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

6e-26

719) Dgeo_2486
( YP_593994.1 )

two component LuxR family transcriptional regulator

NC_008010
(Deinococcus geothermalis DSM 11300)

6e-26

720) AMIS_39230
( YP_005463659.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

7e-26

721) Cwoe_0615
( YP_003392425.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

7e-26

722) O159_15460
( YP_008580170.1 )

two-component system regulatory protein

NC_022438
(Leifsonia xyli DSM 46306)

8e-26

723) O3I_032545
( YP_006811432.1 )

LuxR family transcriptional regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

8e-26

724) Namu_0544
( YP_003199949.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

8e-26

725) Snas_0625
( YP_003509432.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

8e-26

726) HMPREF9154_0526
( YP_006510852.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

9e-26

727) AORI_2759
( YP_008011749.1 )

two-component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

9e-26

728) SGR_204
( YP_001821716.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

9e-26

729) SBI_02254
( YP_004960506.1 )

response regulator receiver protein

NC_016582
(Streptomyces bingchenggensis BCW-1)

9e-26

730) Celf_1092
( YP_004452614.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

1e-25

731) Tpau_0647
( YP_003645623.1 )

LuxR family transcriptional regulator

NC_014158
(Tsukamurella paurometabola DSM 20162)

1e-25

732) Isova_0847
( YP_004541525.1 )

two component transcriptional regulator, LuxR family

NC_015588
(Isoptericola variabilis 225)

1e-25

733) Tfu_1403
( YP_289464.1 )

LuxR family transcriptional regulator

NC_007333
(Thermobifida fusca YX)

1e-25

734) Snas_3714
( YP_003512464.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

1e-25

735) SC3D11.12
( NP_629592.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-25

736) SHJG_2716
( YP_006243863.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

1e-25

737) SHJGH_2480
( YP_007691480.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

1e-25

738) CMM_0404
( YP_001221144.1 )

putative two-component system response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

1e-25

739) Namu_0608
( YP_003200012.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

1e-25

740) VAB18032_02010
( YP_004408086.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

1e-25

741) ACP_2113
( YP_002755166.1 )

two-component response regulator

NC_012483
(Acidobacterium capsulatum ATCC 51196)

1e-25

742) SCAB_18251
( YP_003487518.1 )

two-component system response regulator

NC_013929
(Streptomyces scabiei 87.22)

1e-25

743) Tpau_1874
( YP_003646826.1 )

LuxR family transcriptional regulator

NC_014158
(Tsukamurella paurometabola DSM 20162)

2e-25

744) BN159_2192
( YP_007520698.1 )

LuxR family transcriptional regulator

NC_020504
(Streptomyces davawensis JCM 4913)

2e-25

745) BN159_2047
( YP_007520553.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

2e-25

746) Kfla_4301
( YP_003382135.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-25

747) SCAB_75551
( YP_003493067.1 )

two-component response regulator

NC_013929
(Streptomyces scabiei 87.22)

2e-25

748) Sare_1603
( YP_001536487.1 )

two component LuxR family transcriptional regulator

NC_009953
(Salinispora arenicola CNS-205)

2e-25

749) DIP0091
( NP_938488.1 )

two-component system response regulator

NC_002935
(Corynebacterium diphtheriae NCTC13129)

2e-25

750) Kfla_1977
( YP_003379868.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-25

751) Cyan7425_1401
( YP_002482135.1 )

LuxR family transcriptional regulator

NC_011884
(Cyanothece sp. PCC 7425)

3e-25

752) SCAH10.19
( NP_630354.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

3e-25

753) SHJG_8602
( YP_006249740.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-25

754) SHJGH_8362
( YP_007697358.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-25

755) Strvi_0505
( YP_004810563.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-25

756) FraEuI1c_4286
( YP_004018155.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

3e-25

757) Micau_2938
( YP_003836047.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

3e-25

758) ML5_5451
( YP_004085067.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

3e-25

759) CD31A_0101
( YP_005156812.1 )

two-component system response regulator

NC_016799
(Corynebacterium diphtheriae 31A)

3e-25

760) CDBH8_0096
( YP_005159188.1 )

two-component system response regulator

NC_016800
(Corynebacterium diphtheriae BH8)

3e-25

761) CDCE8392_0054
( YP_005132606.1 )

two-component system response regulator

NC_016785
(Corynebacterium diphtheriae CDCE 8392)

3e-25

762) CDHC02_0097
( YP_005163884.1 )

two-component system response regulator

NC_016802
(Corynebacterium diphtheriae HC02)

3e-25

763) CDHC03_0062
( YP_005137111.1 )

two-component system response regulator

NC_016787
(Corynebacterium diphtheriae HC03)

3e-25

764) CDHC04_0058
( YP_005139369.1 )

two-component system response regulator

NC_016788
(Corynebacterium diphtheriae HC04)

3e-25

765) HMPREF9154_1454
( YP_006511706.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

3e-25

766) O3I_033395
( YP_006811602.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

4e-25

767) Sare_4860
( YP_001539601.1 )

two component LuxR family transcriptional regulator

NC_009953
(Salinispora arenicola CNS-205)

4e-25

768) Lxx14540
( YP_062373.1 )

two-component system regulatory protein

NC_006087
(Leifsonia xyli CTCB07)

4e-25

769) MODMU_4222
( YP_006368088.1 )

two component response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_017955
(Modestobacter marinus BC501)

4e-25

770) SVEN_7311
( YP_006882856.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

4e-25

771) yxjL
( YP_004914395.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

4e-25

772) SCATT_49000
( YP_006056793.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

4e-25

773) Cwoe_0356
( YP_003392167.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

5e-25

774) Psed_3179
( YP_004333228.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

5e-25

775) CDB402_0057
( YP_005126571.1 )

two-component system response regulator

NC_016783
(Corynebacterium diphtheriae INCA 402)

5e-25

776) Gbro_3475
( YP_003274561.1 )

response regulator receiver

NC_013441
(Gordonia bronchialis DSM 43247)

6e-25

777) Sros_1746
( YP_003337480.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

6e-25

778) SGR_6267
( YP_001827779.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

6e-25

779) SVEN_5029
( YP_006880574.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

6e-25

780) Sros_3251
( YP_003338937.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

6e-25

781) Strop_2458
( YP_001159282.1 )

response regulator receiver

NC_009380
(Salinispora tropica CNB-440)

6e-25

782) CD241_0088
( YP_005124357.1 )

two-component system response regulator

NC_016782
(Corynebacterium diphtheriae 241)

6e-25

783) CDC7B_0055
( YP_005161510.1 )

two-component system response regulator

NC_016801
(Corynebacterium diphtheriae C7 (beta))

6e-25

784) CDHC01_0089
( YP_005134890.1 )

two-component system response regulator

NC_016786
(Corynebacterium diphtheriae HC01)

6e-25

785) Gbro_3238
( YP_003274336.1 )

LuxR family transcriptional regulator

NC_013441
(Gordonia bronchialis DSM 43247)

6e-25

786) Bfae_20460
( YP_003155443.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_013172
(Brachybacterium faecium DSM 4810)

7e-25

787) Caci_0956
( YP_003111729.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

7e-25

788) Cfla_0822
( YP_003635931.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

1e-24

789) Cfla_3222
( YP_003638303.1 )

LuxR family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

1e-24

790) O3I_023040
( YP_006809537.1 )

two component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

1e-24

791) VAB18032_21360
( YP_004405972.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

1e-24

792) Amir_3219
( YP_003100973.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

1e-24

793) 2SCG18.07
( NP_625547.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-24

794) SFUL_1018
( YP_007929883.1 )

two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

1e-24

795) B005_1980
( YP_006641085.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

1e-24

796) Oscil6304_0772
( YP_007084429.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_019693
(Oscillatoria acuminata PCC 6304)

1e-24

797) Sfla_1884
( YP_004922835.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

1e-24

798) Tcur_1300
( YP_003298921.1 )

LuxR family two component transcriptional regulator

NC_013510
(Thermomonospora curvata DSM 43183)

1e-24

799) SAV_4537
( NP_825714.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

1e-24

800) B446_02190
( YP_008384081.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

1e-24

801) B446_33105
( YP_008390236.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

1e-24

802) B737_2901
( YP_008459233.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

7e-25

803) RAM_14905
( YP_005530926.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

7e-25

804) AMES_2900
( YP_006549381.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

7e-25

805) AMED_2931
( YP_003765127.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

7e-25

806) Strvi_1683
( YP_004811701.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

7e-25

807) ANT_15510
( YP_004174179.1 )

NarL family two-component response regulator

NC_014960
(Anaerolinea thermophila UNI-1)

7e-25

808) Sked_25620
( YP_003315300.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

8e-25

809) Kfla_6981
( YP_003384768.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

8e-25

810) SVEN_0160
( YP_006875707.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

8e-25

811) CMM_0708
( YP_001221448.1 )

putative two-component system response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

9e-25

812) L083_2696
( YP_007950686.1 )

two-component system response regulator

NC_021191
(Actinoplanes sp. N902-109)

9e-25

813) MASS_1515
( YP_008021981.1 )

putative two-component system response regulator LuxR

NC_021282
(Mycobacterium abscessus 50594)

9e-25

814) MAB_1522
( YP_001702262.1 )

Putative two-component system response regulator LuxR

NC_010397
(Mycobacterium abscessus ATCC 19977)

9e-25

815) yxjL
( YP_006520595.1 )

transcriptional regulatory protein yxjL

NC_018150
(Mycobacterium abscessus GO 06)

9e-25

816) Amir_4433
( YP_003102125.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

2e-24

817) SACE_7249
( YP_001109332.1 )

two-component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

2e-24

818) BN159_7563
( YP_007526069.1 )

two-component LuxR family transcriptional regulator

NC_020504
(Streptomyces davawensis JCM 4913)

2e-24

819) Isova_0636
( YP_004541317.1 )

two component transcriptional regulator, LuxR family

NC_015588
(Isoptericola variabilis 225)

2e-24

820) KSE_22850
( YP_004904061.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-24

821) SVEN_3624
( YP_006879169.1 )

DNA-binding response regulator, LuxR family

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-24

822) Sros_5499
( YP_003340998.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

2e-24

823) Deima_1242
( YP_004170558.1 )

two component LuxR family transcriptional regulator

NC_014958
(Deinococcus maricopensis DSM 21211)

2e-24

824) SBI_05938
( YP_004964189.1 )

putative two component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-24

825) SGR_874
( YP_001822386.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

2e-24

826) Caci_6094
( YP_003116790.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

2e-24

827) Deide_20700
( YP_002786845.2 )

response regulator NarL

NC_012526
(Deinococcus deserti VCD115)

2e-24

828) Dgeo_0315
( YP_603787.1 )

LuxR family transcriptional regulator

NC_008025
(Deinococcus geothermalis DSM 11300)

2e-24

829) Mrub_1071
( YP_003506855.1 )

two component LuxR family transcriptional regulator

NC_013946
(Meiothermus ruber DSM 1279)

2e-24

830) K649_05000
( YP_007879799.1 )

two component LuxR family transcriptional regulator

NC_021081
(Meiothermus ruber DSM 1279)

2e-24

831) Strop_4132
( YP_001160939.1 )

response regulator receiver

NC_009380
(Salinispora tropica CNB-440)

2e-24

832) liaR
( YP_004920460.1 )

transcriptional regulatory protein liaR

NC_016113
(Streptomyces cattleya NRRL 8057)

2e-24

833) SCATT_p05610
( YP_006050707.1 )

two component transcriptional regulator, LuxR family

NC_017585
(Streptomyces cattleya NRRL 8057)

2e-24

834) B446_20095
( YP_008387642.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

2e-24

835) Sros_7211
( YP_003342644.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-24

836) AMIS_47710
( YP_005464507.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

3e-24

837) Amir_2811
( YP_003100588.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-24

838) Celf_2529
( YP_004454041.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

3e-24

839) liaR
( YP_004915034.1 )

Transcriptional regulatory protein liaR

NC_016111
(Streptomyces cattleya NRRL 8057)

3e-24

840) CMS_0994
( YP_001709738.1 )

two-component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

3e-24

841) Sros_3998
( YP_003339649.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-24

842) SCAB_88531
( YP_003494312.1 )

two-component response regulator

NC_013929
(Streptomyces scabiei 87.22)

3e-24

843) SCATT_55440
( YP_006057437.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_017586
(Streptomyces cattleya NRRL 8057)

3e-24

844) L083_2841
( YP_007950831.1 )

two-component system, regulatory protein

NC_021191
(Actinoplanes sp. N902-109)

4e-24

845) GPOL_c30230
( YP_005283404.1 )

LuxR family transcriptional regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

4e-24

846) O5Y_09465
( YP_008452481.1 )

two component LuxR family transcriptional regulator

NC_022115
(Rhodococcus erythropolis CCM2595)

4e-24

847) Snas_5068
( YP_003513797.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-24

848) ROP_64570
( YP_002783649.1 )

NarL family two-component response regulator

NC_012522
(Rhodococcus opacus B4)

4e-24

849) Tfu_1845
( YP_289901.1 )

LuxR family transcriptional regulator

NC_007333
(Thermobifida fusca YX)

5e-24

850) AS9A_3907
( YP_004495143.1 )

Two component LuxR family transcriptional regulator

NC_015564
(Amycolicicoccus subflavus DQS3-9A1)

5e-24

851) Sfla_2722
( YP_004923667.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

5e-24

852) F750_4077
( YP_007861006.1 )

putative two-component system response regulator

NC_021055
(Streptomyces sp. PAMC26508)

5e-24

853) CMS_0957
( YP_001709703.1 )

two-component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

5e-24

854) B446_27270
( YP_008389073.1 )

two-component system response regulator

NC_021985
(Streptomyces collinus Tu 365)

6e-24

855) Caci_2656
( YP_003113413.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-23

856) Caci_7346
( YP_003118014.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-23

857) Strvi_5414
( YP_004815219.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

1e-23

858) RAM_31765
( YP_005534283.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-23

859) AMES_6102
( YP_006552583.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-23

860) AMED_6192
( YP_003768329.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-23

861) Sked_16860
( YP_003314448.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-23

862) BN159_1800
( YP_007520306.1 )

two-component regulator

NC_020504
(Streptomyces davawensis JCM 4913)

1e-23

863) BN159_6633
( YP_007525139.1 )

two-component system response regulator

NC_020504
(Streptomyces davawensis JCM 4913)

1e-23

864) SACE_1919
( YP_001104155.1 )

two component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

7e-24

865) Sros_7377
( YP_003342806.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

7e-24

866) SBI_05979
( YP_004964230.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

7e-24

867) Bcav_2449
( YP_002882461.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

1e-23

868) Snas_5644
( YP_003514367.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

2e-23

869) B737_6102
( YP_008462434.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

2e-23

870) Cwoe_1616
( YP_003393419.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

2e-23

871) Kfla_5710
( YP_003383514.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

2e-23

872) VAB18032_18800
( YP_004405462.1 )

two component LuxR family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

2e-23

873) ACPL_1208
( YP_006264173.1 )

Response regulator protein vraR

NC_017803
(Actinoplanes sp. SE50/110)

2e-23

874) Bcav_0404
( YP_002880430.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-23

875) Cwoe_3768
( YP_003395560.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

2e-23

876) Gobs_2145
( YP_003409200.1 )

two component LuxR family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

2e-23

877) BN6_23330
( YP_007036524.1 )

Response regulator receiver protein

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-23

878) Celgi_0161
( YP_004599257.1 )

two component transcriptional regulator, LuxR family

NC_015671
(Cellvibrio gilvus ATCC 13127)

3e-23

879) BN159_5518
( YP_007524024.1 )

response regulatory protein

NC_020504
(Streptomyces davawensis JCM 4913)

3e-23

880) Gobs_3116
( YP_003410094.1 )

two component LuxR family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

3e-23

881) Trad_2508
( YP_003706159.1 )

LuxR family two component transcriptional regulator

NC_014221
(Truepera radiovictrix DSM 17093)

3e-23

882) SHJG_6926
( YP_006248066.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-23

883) SHJGH_6686
( YP_007695682.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-23

884) Sros_4115
( YP_003339765.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-23

885) Kfla_2113
( YP_003379994.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

3e-23

886) Snas_2579
( YP_003511352.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

3e-23

887) B737_5338
( YP_008461670.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

4e-23

888) RAM_27545
( YP_005533443.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

4e-23

889) AMES_5338
( YP_006551819.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

4e-23

890) AMED_5403
( YP_003767565.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

4e-23

891) SBI_05574
( YP_004963825.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

4e-23

892) SACTE_3189
( YP_004803595.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

4e-23

893) KSE_05860
( YP_004902385.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

4e-23

894) SGR_2159
( YP_001823671.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

4e-23

895) A605_08695
( YP_007465103.1 )

two-component system response regulator TcsR7

NC_020302
(Corynebacterium halotolerans YIM 70093)

4e-23

896) SAV_1282
( NP_822457.1 )

two-component system response regulator

NC_003155
(Streptomyces avermitilis MA-4680)

4e-23

897) AMIS_65540
( YP_005466290.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-22

898) Cwoe_0253
( YP_003392064.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

5e-23

899) L083_8036
( YP_007956026.1 )

two component LuxR family transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

5e-23

900) Asphe3_35340
( YP_004242769.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

5e-23

901) Gobs_4064
( YP_003411000.1 )

two component LuxR family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

5e-23

902) Tpau_1009
( YP_003645981.1 )

LuxR family transcriptional regulator

NC_014158
(Tsukamurella paurometabola DSM 20162)

5e-23

903) NOCYR_3662
( YP_005265062.1 )

two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

6e-23

904) Krad_4217
( YP_001363944.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

6e-23

905) GPOL_c19450
( YP_005282352.1 )

putative two-component system response regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

6e-23

906) Strvi_3806
( YP_004813748.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

6e-23

907) SACTE_4321
( YP_004804695.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

7e-23

908) ROP_53160
( YP_002782508.1 )

NarL family two-component response regulator

NC_012522
(Rhodococcus opacus B4)

7e-23

909) KSE_27780
( YP_004904545.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

8e-23

910) Amir_3696
( YP_003101425.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

8e-23

911) Sros_0609
( YP_003336375.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-23

912) Snas_3040
( YP_003511804.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

9e-23

913) AMIS_79700
( YP_005467706.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

9e-23

914) clvR
( YP_001222707.1 )

putative two-component system, response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

9e-23

915) Kfla_2364
( YP_003380238.1 )

LuxR family two component transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

1e-22

916) MODMU_2653
( YP_006366567.1 )

LuxR family two component transcriptional regulator

NC_017955
(Modestobacter marinus BC501)

1e-22

917) HMPREF9154_2885
( YP_006513025.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

1e-22

918) Sros_0508
( YP_003336275.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

2e-22

919) Bcav_2710
( YP_002882717.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-22

920) SCD95A.09
( NP_628448.1 )

response regulatory protein

NC_003888
(Streptomyces coelicolor A3(2))

2e-22

921) SBI_09176
( YP_004967425.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-22

922) Amir_0601
( YP_003098410.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

1e-22

923) BN6_31940
( YP_007037372.1 )

Response regulator receiver protein

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-22

924) AMIS_79620
( YP_005467698.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

2e-22

925) SCAT_4605
( YP_004914096.1 )

two-component system response regulator

NC_016111
(Streptomyces cattleya NRRL 8057)

2e-22

926) SCATT_45960
( YP_006056489.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

2e-22

927) Xcel_0606
( YP_003325203.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

3e-22

928) narP
( NP_901193.1 )

nitrate/nitrite response regulator protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

3e-22

929) KSE_07270
( YP_004902523.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

3e-22

930) HMPREF9154_1758
( YP_006511992.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

3e-22

931) SFUL_1449
( YP_007930303.1 )

Two-component system response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

3e-22

932) AORI_3604
( YP_008012592.1 )

LuxR family transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

3e-22

933) ACPL_3186
( YP_006266149.1 )

transcriptional regulatory protein degU

NC_017803
(Actinoplanes sp. SE50/110)

4e-22

934) CMN_00658
( YP_007684964.1 )

two-component system response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

4e-22

935) AMIS_53850
( YP_005465121.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

4e-22

936) ML5_1291
( YP_004080981.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

4e-22

937) SGR_6946
( YP_001828458.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

4e-22

938) ACPL_5353
( YP_006268308.1 )

response regulator mprA

NC_017803
(Actinoplanes sp. SE50/110)

4e-22

939) Franean1_3835
( YP_001508133.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

4e-22

940) Micau_3055
( YP_003836161.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

5e-22

941) Sros_4219
( YP_003339864.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

5e-22

942) O3I_032700
( YP_006811463.1 )

NarL family two-component response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

6e-22

943) yxjL
( YP_004912145.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

6e-22

944) SCATT_26170
( YP_006054510.1 )

two component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

6e-22

945) CMM_0644
( YP_001221384.1 )

putative two-component system, response regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

7e-22

946) Strvi_5269
( YP_004815080.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

7e-22

947) B737_1084
( YP_008457416.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

7e-22

948) RAM_05530
( YP_005529055.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

7e-22

949) AMES_1083
( YP_006547564.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

7e-22

950) AMED_1088
( YP_003763307.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

7e-22

951) Micau_3311
( YP_003836415.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

8e-22

952) ML5_5081
( YP_004084705.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

8e-22

953) SFUL_5176
( YP_007933954.1 )

chitinase two-component response regulator

NC_021177
(Streptomyces fulvissimus DSM 40593)

8e-22

954) B005_2385
( YP_006641482.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

8e-22

955) Sros_6161
( YP_003341634.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-22

956) HMPREF9154_1697
( YP_006511931.1 )

response regulator receiver domain-containing protein

NC_018142
(Propionibacterium propionicum F0230a)

8e-22

957) AMIS_55260
( YP_005465262.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

9e-22

958) liaR2
( YP_005329704.1 )

Two component transcriptional regulatory protein liaR

NC_016943
(Blastococcus saxobsidens DD2)

9e-22

959) BN6_61460
( YP_007040271.1 )

CheY-like receiver domain/HTH DNA-binding domain-containing response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

9e-22

960) AMIS_42900
( YP_005464026.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

9e-22

961) SBI_02965
( YP_004961217.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

1e-21

962) AMIS_23780
( YP_005462114.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

1e-21

963) SCAT_0651
( YP_004910196.1 )

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016111
(Streptomyces cattleya NRRL 8057)

1e-21

964) B737_6260
( YP_008462591.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-21

965) RAM_32560
( YP_005534442.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-21

966) AMES_6260
( YP_006552740.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-21

967) AMED_6350
( YP_003768486.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-21

968) KTR9_3513
( YP_006670304.1 )

transcriptional regulatory protein

NC_018581
(Gordonia sp. KTR9)

1e-21

969) B005_2431
( YP_006641524.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

1e-21

970) MLP_53410
( YP_004575758.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

2e-21

971) ML5_5102
( YP_004084726.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

2e-21

972) CE1356
( NP_737966.1 )

transcriptional regulator

NC_004369
(Corynebacterium efficiens YS-314)

2e-21

973) BN6_23280
( YP_007036519.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-21

974) AORI_2574
( YP_008011565.1 )

LuxR family transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-21

975) Micau_1043
( YP_003834181.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

2e-21

976) SACE_7262
( YP_001109345.1 )

response regulator, two-component system

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

2e-21

977) SVEN_5504
( YP_006881049.1 )

putative two-component system response regulator

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-21

978) Deipr_0800
( YP_004255573.1 )

two component transcriptional regulator, LuxR family

NC_015161
(Deinococcus proteolyticus MRP)

2e-21

979) SCATT_06580
( YP_006052551.1 )

LuxR family two component transcriptional regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

2e-21

980) CMS_0501
( YP_001709274.1 )

two-component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

3e-21

981) KSE_09510
( YP_004902744.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

3e-21

982) Sros_0232
( YP_003336015.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-21

983) ML5_1371
( YP_004081060.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

3e-21

984) Micau_3291
( YP_003836395.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

4e-21

985) Bcav_3891
( YP_002883895.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

5e-21

986) SCAB_7721
( YP_003486529.1 )

two-component system regulator

NC_013929
(Streptomyces scabiei 87.22)

5e-21

987) Tpau_1410
( YP_003646377.1 )

LuxR family transcriptional regulator

NC_014158
(Tsukamurella paurometabola DSM 20162)

5e-21

988) XNR_2780
( YP_007746146.1 )

LuxR family two component transcriptional regulator

NC_020990
(Streptomyces albus J1074)

5e-21

989) Micau_1125
( YP_003834263.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

6e-21

990) PACID_07230
( YP_006979916.1 )

Transcriptional regulator, LuxR family

NC_019395
(Propionibacterium acidipropionici ATCC 4875)

7e-21

991) SACE_5231
( YP_001107396.1 )

two-component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

7e-21

992) Tfu_2233
( YP_290289.1 )

LuxR family transcriptional regulator

NC_007333
(Thermobifida fusca YX)

7e-21

993) Bcav_0236
( YP_002880263.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

7e-21

994) FraEuI1c_5960
( YP_004019814.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

8e-21

995) Franean1_0533
( YP_001504899.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

9e-21

996) FraEuI1c_1875
( YP_004015797.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

9e-21

997) F750_3984
( YP_007860913.1 )

response regulatory protein

NC_021055
(Streptomyces sp. PAMC26508)

1e-20

998) SC5A7.17c
( NP_630742.1 )

two-component regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-20

999) Celf_0502
( YP_004452029.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

9e-21

1000) Amir_2225
( YP_003100011.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

1e-20

1001) Strop_0395
( YP_001157258.1 )

two component LuxR family transcriptional regulator

NC_009380
(Salinispora tropica CNB-440)

1e-20

1002) SCAT_p0349
( YP_004919641.1 )

two component system response regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

1e-20

1003) SCATT_p13940
( YP_006051540.1 )

two component system response regulator

NC_017585
(Streptomyces cattleya NRRL 8057)

1e-20

1004) Caci_5428
( YP_003116128.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-20

1005) B005_3218
( YP_006642295.1 )

bacterial regulatory s, luxR family protein

NC_018524
(Nocardiopsis alba ATCC BAA-2165)

2e-20

1006) Sked_17000
( YP_003314461.1 )

chemotaxis protein CheY

NC_013521
(Sanguibacter keddieii DSM 10542)

2e-20

1007) GPOL_c05240
( YP_005280959.1 )

putative two-component system response regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

2e-20

1008) SC5B8.15
( NP_629948.1 )

two-component response regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-20

1009) SCAB_71481
( YP_003492678.1 )

two component response regulator

NC_013929
(Streptomyces scabiei 87.22)

2e-20

1010) Sfla_2811
( YP_004923756.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

3e-20

1011) SGR_4841
( YP_001826353.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

3e-20

1012) Sros_3669
( YP_003339341.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-20

1013) YM304_42450
( YP_007566497.1 )

putative NarL family two-component response regulator

NC_020520
(Ilumatobacter coccineum YM16-304)

3e-20

1014) yhcZ
( YP_007525238.1 )

putative transcriptional regulatory protein yhcZ

NC_020504
(Streptomyces davawensis JCM 4913)

3e-20

1015) yxjL
( YP_004913697.1 )

transcriptional regulatory protein yxjL

NC_016111
(Streptomyces cattleya NRRL 8057)

5e-20

1016) SVEN_4026
( YP_006879571.1 )

putative two-component system response regulator

NC_018750
(Streptomyces venezuelae ATCC 10712)

5e-20

1017) senR
( YP_004904167.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

5e-20

1018) Xcel_3179
( YP_003327737.1 )

LuxR family two component transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

5e-20

1019) SFUL_4073
( YP_007932859.1 )

Response regulatory protein

NC_021177
(Streptomyces fulvissimus DSM 40593)

6e-20

1020) F750_1349
( YP_007858333.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

6e-20

1021) AMIS_52860
( YP_005465022.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

7e-20

1022) Bcav_0335
( YP_002880361.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

7e-20

1023) Sros_5304
( YP_003340814.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

8e-20

1024) AMIS_44810
( YP_005464217.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

8e-20

1025) SC5H4.08
( NP_629812.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

9e-20

1026) BN6_10900
( YP_007035289.1 )

Transcriptional regulator, LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

1e-19

1027) SHJG_3252
( YP_006244399.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

1e-19

1028) SHJGH_3017
( YP_007692017.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

1e-19

1029) L083_1790
( YP_007949780.1 )

response regulator receiver

NC_021191
(Actinoplanes sp. N902-109)

1e-19

1030) SGR_4042
( YP_001825554.1 )

two-component system response regulator

NC_010572
(Streptomyces griseus NBRC 13350)

1e-19

1031) SBI_05584
( YP_004963835.1 )

two component LuxR family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-19

1032) Strvi_4399
( YP_004814320.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

2e-19

1033) NOCYR_3977
( YP_005265372.1 )

putative two-component system response regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

2e-19

1034) L083_3693
( YP_007951683.1 )

LuxR family two component transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

2e-19

1035) SCATT_41860
( YP_006056079.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

2e-19

1036) yfiK
( YP_004919725.1 )

transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

2e-19

1037) Sros_7606
( YP_003343023.1 )

response regulator receiver protein

NC_013595
(Streptosporangium roseum DSM 43021)

3e-19

1038) Strvi_5460
( YP_004815263.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-19

1039) OEM_51920
( YP_008191057.1 )

two-component system response regulator

NC_021715
(Mycobacterium yongonense 05-1390)

3e-19

1040) L083_4968
( YP_007952958.1 )

LuxR family two component transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

4e-19

1041) Namu_0523
( YP_003199930.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

4e-19

1042) MTES_0839
( YP_004223683.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

4e-19

1043) SCATT_p13060
( YP_006051452.1 )

two component system response regulator

NC_017585
(Streptomyces cattleya NRRL 8057)

4e-19

1044) Snas_5788
( YP_003514511.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

4e-19

1045) Celf_1323
( YP_004452845.1 )

LuxR family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

5e-19

1046) XNR_4951
( YP_007748275.1 )

LuxR family two-component system response regulator

NC_020990
(Streptomyces albus J1074)

5e-19

1047) Gbro_4528
( YP_003275554.1 )

response regulator receiver

NC_013441
(Gordonia bronchialis DSM 43247)

5e-19

1048) SACE_6626
( YP_001108717.1 )

two component system response regulator

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

5e-19

1049) SBI_03773
( YP_004962025.1 )

putative two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

6e-19

1050) FraEuI1c_7001
( YP_004020838.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

6e-19

1051) Snas_4836
( YP_003513570.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

7e-19

1052) AORI_0370
( YP_008009362.1 )

two-component response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

9e-19

1053) Cwoe_0366
( YP_003392177.1 )

LuxR family transcriptional regulator

NC_013739
(Conexibacter woesei DSM 14684)

9e-19

1054) CMN_01212
( YP_007685503.1 )

two-component system, response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

1e-18

1055) Krad_2518
( YP_001362257.1 )

LuxR family two component transcriptional regulator

NC_009664
(Kineococcus radiotolerans SRS30216)

1e-18

1056) chiR
( YP_003488530.1 )

two-component chitin response regulator

NC_013929
(Streptomyces scabiei 87.22)

1e-18

1057) narP
( YP_003493545.1 )

nitrate/nitrite response regulator

NC_013929
(Streptomyces scabiei 87.22)

2e-18

1058) BN6_38950
( YP_007038057.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-18

1059) SVEN_5323
( YP_006880868.1 )

Response regulator containing a CheY receiver domain and an HTH DNA-binding domain

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-18

1060) Snas_4479
( YP_003513217.1 )

LuxR family two component transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

3e-18

1061) SBI_08194
( YP_004966443.1 )

two-component system response regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-18

1062) B737_6412
( YP_008462744.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

3e-18

1063) RAM_33365
( YP_005534603.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

3e-18

1064) AMES_6412
( YP_006552893.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

3e-18

1065) AMED_6506
( YP_003768639.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

3e-18

1066) KSE_09570
( YP_004902749.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

3e-18

1067) ACPL_4564
( YP_006267523.1 )

transcriptional regulatory protein degU

NC_017803
(Actinoplanes sp. SE50/110)

4e-18

1068) MAP4317c
( NP_963251.1 )

hypothetical protein

NC_002944
(Mycobacterium avium K-10)

4e-18

1069) MAP4_4443
( YP_007974188.1 )

two-component system response regulator

NC_021200
(Mycobacterium avium MAP4)

4e-18

1070) MLP_04430
( YP_004570860.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

4e-18

1071) Namu_5018
( YP_003204279.1 )

LuxR family two component transcriptional regulator

NC_013235
(Nakamurella multipartita DSM 44233)

4e-18

1072) MAV_5280
( YP_884392.1 )

two-component system response regulator

NC_008595
(Mycobacterium avium 104)

5e-18

1073) Franean1_3846
( YP_001508144.1 )

two component LuxR family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

7e-18

1074) BN6_65070
( YP_007040622.1 )

Transcriptional regulator, LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

7e-18

1075) O3I_031985
( YP_006811320.1 )

two-component system response regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

9e-18

1076) KSE_30660
( YP_004904833.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

9e-18

1077) Svir_04820
( YP_003132384.1 )

response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein

NC_013159
(Saccharomonospora viridis DSM 43017)

9e-18

1078) Caci_5719
( YP_003116418.1 )

LuxR family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

1e-17

1079) Dgeo_1708
( YP_605172.1 )

LuxR family transcriptional regulator

NC_008025
(Deinococcus geothermalis DSM 11300)

1e-17

1080) KSE_59490
( YP_004907675.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-17

1081) Bcav_0717
( YP_002880740.1 )

two component LuxR family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

2e-17

1082) KSE_62470
( YP_004907967.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-17

1083) nfa42460
( YP_120459.1 )

two-component system response regulator

NC_006361
(Nocardia farcinica IFM 10152)

2e-17

1084) Noca_3488
( YP_924675.1 )

response regulator receiver

NC_008699
(Nocardioides sp. JS614)

2e-17

1085) AORI_5522
( YP_008014508.1 )

two component system response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-17

1086) MIP_07748
( YP_006732293.1 )

two-component system response regulator

NC_018612
(Mycobacterium indicus pranii MTCC 9506)

3e-17

1087) OCU_51130
( YP_005340653.1 )

two-component system response regulator

NC_016946
(Mycobacterium intracellulare ATCC 13950)

3e-17

1088) OCO_51200
( YP_005345803.1 )

two-component system response regulator

NC_016947
(Mycobacterium intracellulare MOTT-02)

3e-17

1089) OCQ_52190
( YP_005351051.1 )

two-component system response regulator

NC_016948
(Mycobacterium intracellulare MOTT-64)

3e-17

1090) W7S_25670
( YP_006308810.1 )

two-component system response regulator

NC_017904
(Mycobacterium sp. MOTT36Y)

3e-17

1091) Psed_0316
( YP_004330442.1 )

LuxR family transcriptional regulator

NC_015312
(Pseudonocardia dioxanivorans CB1190)

4e-17

1092) ACPL_5146
( YP_006268101.1 )

Transcriptional regulatory protein desR

NC_017803
(Actinoplanes sp. SE50/110)

5e-17

1093) AMIS_52510
( YP_005464987.1 )

putative two-component system response regulator

NC_017093
(Actinoplanes missouriensis 431)

6e-17

1094) Sfla_1948
( YP_004922899.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

7e-17

1095) F750_4877
( YP_007861799.1 )

DNA-binding response regulator

NC_021055
(Streptomyces sp. PAMC26508)

7e-17

1096) BN6_31650
( YP_007037343.1 )

Transcriptional regulator, LuxR family

NC_019673
(Saccharothrix espanaensis DSM 44229)

7e-17

1097) Amir_2409
( YP_003100195.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

9e-17

1098) KSE_66880
( YP_004908402.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

1e-16

1099) Mlut_18530
( YP_002957890.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_012803
(Micrococcus luteus NCTC 2665)

1e-16

1100) FraEuI1c_2480
( YP_004016384.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

2e-16

1101) SHJG_6458
( YP_006247598.1 )

chitinase two-component response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

3e-16

1102) SHJGH_6219
( YP_007695216.1 )

chitinase two-component response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

3e-16

1103) MTES_2152
( YP_004224996.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_015125
(Microbacterium testaceum StLB037)

3e-16

1104) liaR
( YP_004914193.1 )

Transcriptional regulatory protein liaR

NC_016111
(Streptomyces cattleya NRRL 8057)

3e-16

1105) SCATT_46930
( YP_006056587.1 )

two-component system response regulator

NC_017586
(Streptomyces cattleya NRRL 8057)

3e-16

1106) B737_6106
( YP_008462438.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

6e-16

1107) RAM_31785
( YP_005534287.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

6e-16

1108) AMES_6106
( YP_006552587.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

6e-16

1109) AMED_6196
( YP_003768333.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

6e-16

1110) Strvi_8687
( YP_004818271.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

1e-15

1111) FraEuI1c_5248
( YP_004019106.1 )

LuxR family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

1e-15

1112) L083_3138
( YP_007951128.1 )

LuxR response regulator receiver

NC_021191
(Actinoplanes sp. N902-109)

2e-15

1113) SACTE_0098
( YP_004800594.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

2e-15

1114) Micau_3457
( YP_003836561.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

2e-15

1115) ML5_4933
( YP_004084558.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

2e-15

1116) ACPL_5667
( YP_006268622.1 )

yxjL-like transcriptional regulatory protein

NC_017803
(Actinoplanes sp. SE50/110)

3e-15

1117) hrrA
( YP_005126410.1 )

two component system response regulator protein

NC_016782
(Corynebacterium diphtheriae 241)

4e-15

1118) hrrA
( YP_005158983.1 )

two component system response regulator protein

NC_016799
(Corynebacterium diphtheriae 31A)

4e-15

1119) hrrA
( YP_005161334.1 )

two component system response regulator protein

NC_016800
(Corynebacterium diphtheriae BH8)

4e-15

1120) hrrA
( YP_005163680.1 )

two component system response regulator protein

NC_016801
(Corynebacterium diphtheriae C7 (beta))

4e-15

1121) hrrA
( YP_005134689.1 )

two component system response regulator protein

NC_016785
(Corynebacterium diphtheriae CDCE 8392)

4e-15

1122) hrrA
( YP_005136945.1 )

two component system response regulator protein

NC_016786
(Corynebacterium diphtheriae HC01)

4e-15

1123) hrrA
( YP_005165904.1 )

two component system response regulator protein

NC_016802
(Corynebacterium diphtheriae HC02)

4e-15

1124) hrrA
( YP_005128604.1 )

two component system response regulator protein

NC_016783
(Corynebacterium diphtheriae INCA 402)

4e-15

1125) DIP2267
( NP_940570.1 )

two component system response regulator protein

NC_002935
(Corynebacterium diphtheriae NCTC13129)

4e-15

1126) hrrA
( YP_005145976.1 )

two component system response regulator protein

NC_016790
(Corynebacterium diphtheriae VA01)

4e-15

1127) hrrA
( YP_005139190.1 )

two component system response regulator protein

NC_016787
(Corynebacterium diphtheriae HC03)

4e-15

1128) hrrA
( YP_005141483.1 )

two component system response regulator protein

NC_016788
(Corynebacterium diphtheriae HC04)

4e-15

1129) hrrA
( YP_005143779.1 )

two component system response regulator protein

NC_016789
(Corynebacterium diphtheriae PW8)

6e-15

1130) MODMU_1795
( YP_006365723.1 )

two-component signal transduction response regulator

NC_017955
(Modestobacter marinus BC501)

6e-15

1131) AORI_4951
( YP_008013938.1 )

NarL family two-component response regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

7e-15

1132) O3I_000640
( YP_006805065.1 )

LuxR family two component transcriptional regulator

NC_018681
(Nocardia brasiliensis HUJEG-1)

8e-15

1133) CMN_00024
( YP_007684382.1 )

two-component system response regulator

NC_020891
(Clavibacter michiganensis NCPPB 2581)

1e-14

1134) MLP_12630
( YP_004571680.1 )

two-component system response regulator

NC_015635
(Microlunatus phosphovorus NM-1)

1e-14

1135) cinR
( YP_004909951.1 )

CinR protein

NC_016111
(Streptomyces cattleya NRRL 8057)

1e-14

1136) SCATT_04190
( YP_006052312.1 )

CinR protein

NC_017586
(Streptomyces cattleya NRRL 8057)

1e-14

1137) Micau_3071
( YP_003836177.1 )

response regulator receiver

NC_014391
(Micromonospora aurantiaca ATCC 27029)

9e-15

1138) ML5_5324
( YP_004084947.1 )

two component LuxR family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

9e-15

1139) BLASA_2133
( YP_005329073.1 )

Two component response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_016943
(Blastococcus saxobsidens DD2)

1e-14

1140) SHJG_8263
( YP_006249402.1 )

two-component system response regulator

NC_017765
(Streptomyces hygroscopicus 5008)

2e-14

1141) SHJGH_8024
( YP_007697020.1 )

two-component system response regulator

NC_020895
(Streptomyces hygroscopicus TL01)

2e-14

1142) B737_2384
( YP_008458716.1 )

two-component system response regulator

NC_022116
(Amycolatopsis mediterranei RB)

2e-14

1143) RAM_12260
( YP_005530399.1 )

two-component system response regulator

NC_017186
(Amycolatopsis mediterranei S699)

2e-14

1144) AMES_2383
( YP_006548864.1 )

two-component system response regulator

NC_018266
(Amycolatopsis mediterranei S699)

2e-14

1145) AMED_2410
( YP_003764608.1 )

two-component system response regulator

NC_014318
(Amycolatopsis mediterranei U32)

2e-14

1146) L083_5231
( YP_007953221.1 )

response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

NC_021191
(Actinoplanes sp. N902-109)

3e-14

1147) Amir_4995
( YP_003102665.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-14

1148) 2SC6G5.21c; chiR
( NP_629516.1 )

chitinase two-component response regulator

NC_003888
(Streptomyces coelicolor A3(2))

5e-14

1149) SACTE_4572
( YP_004804940.1 )

LuxR family two component transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

6e-14

1150) Oter_1682
( YP_001818566.1 )

two component LuxR family transcriptional regulator

NC_010571
(Opitutus terrae PB90-1)

2e-13

1151) CMS_0026
( YP_001708819.1 )

two-component system response regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

5e-13

1152) chiR
( YP_004906759.1 )

putative two-component system response regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-12

1153) SC10F4.21c
( NP_631688.1 )

two-component system response regulator

NC_003888
(Streptomyces coelicolor A3(2))

1e-11

1154) Strvi_7498
( YP_004817130.1 )

LuxR family two component transcriptional regulator

NC_015957
(Streptomyces violaceusniger Tu 4113)

3e-10

1155) NOCYR_1692
( YP_005263119.1 )

LuxR family two component transcriptional regulator

NC_016887
(Nocardia cyriacigeorgica GUH-2)

9e-10

1156) BN6_28050
( YP_007036990.1 )

Two-component system, response regulator

NC_019673
(Saccharothrix espanaensis DSM 44229)

2e-09

1157) XNR_1456
( YP_007744848.1 )

LuxR family two component transcriptional regulator

NC_020990
(Streptomyces albus J1074)

2e-09

1158) Sare_2352
( YP_001537201.1 )

two component LuxR family transcriptional regulator

NC_009953
(Salinispora arenicola CNS-205)

4e-09

1159) GPOL_c24470
( YP_005282842.1 )

LuxR family transcriptional regulator

NC_016906
(Gordonia polyisoprenivorans VH2)

7e-09

1160) Sfla_6421
( YP_004927282.1 )

LuxR family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

5e-07

1161) Amir_3314
( YP_003101066.1 )

LuxR family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

3e-04

• Sequence Alignments

1) regB in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  345 bits (1297),  Expect = 9e-97, Method: Compositional matrix adjust.
 Identities = 223/223 (100%), Positives = 223/223 (100%), Gaps = 0/223 (0%)

Query  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60
            MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120
            GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180
            KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223
            LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

2) Sked_19740 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  185 bits (687),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 124/216 (58%), Positives = 169/216 (79%), Gaps = 2/216 (0%)

Query  1    MVVVDDQAMIRAGVRGILQGAPDLSVVGEAADGDTGVRMCASLRPDVVLMDLRMPVLDGI  60
            +V+VDDQAMIRAG+RGIL++A ++ V+GEAADG ++  +  + RPDVVLMDLRMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EAIRRLRSMPDLESLRILVLTTFDDDPDVLAALQAGADGFLSKVAEPAELvdavrgvaag  120
             A   LR+ PDL+++RILVLTTFD+D +VLAAL+AGADGFL+K A++  L+ AV +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  dvMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPRERTIVKQAAQGLDNLQISRQL  180
            D  LS  A+++VV ++ R  R+A  D  L  + A+LT RE  +V  AA+GLDN+ I+R+L
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSA-TDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  181  HISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV  216
             ISP TVKTHL +AM+KL+ RDR Q+V +AFR+GLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

3) Snas_4946 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  175 bits (649),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 110/218 (51%), Positives = 161/218 (74%), Gaps = 4/218 (1%)

Query  4    VIRVLLADDQALVRAGFRALLDSCDDISVVGEANDGEEAFRLIRDMVPDVVLMDIRMPGL  63
            +I V+L DDQA++RAG+R++L+  + I V+GEA DG  AF +IR+  PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGLAATAKITAEASLTSVRIIILTTFDLDEYVFEALRSGASGFLVKDTEPVELLQAVRVV  123
            DG++ATA + A++ L +VRI++LTTFD DE V+ ALR+GA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  ARGDALLSPGVTRRLVAEFAQRAKEPVSAK---KLEQLTEREREVVALAGTGLSNEEIGA  180
            A+GD+ LS+G ++ +V+++ +R++ +       +   LT+RE +VV  A+ GL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  KLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV  218
             LF+SPAT KTH++RAM KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

4) Kfla_1364 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  174 bits (643),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 122/208 (59%), Positives = 155/208 (75%), Gaps = 6/208 (2%)

Query  4    IRVLVVDDQLMIRSGLRALLETGDGIEVVGEAADGQRAVSMARALVPDVVLLDLRMPVLD  63
            I V++VDDQ MIR+GLR++LE + GI V+GEAADG+ A ++ R+  PDVVL+DLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVGAIAQLRADPVTAGIGILVLTTFDTDENVLAALKAGANGFLGKSADYEELRQAVGRVA  123
            GVGA A LRADP   ++ ILVLTTFD DE+VLAAL+AGA+GFL+KSAD E L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDASLSAVATNTVVGHLASTARKPSVHEQASAEELRRVDSLTSREREVVTLVARGLSND  183
             GD+SLSA A++TVV++L   +R ++       E + R  +LT RE +VV   ARGL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT-----DVELIARTATLTHRETDVVLGAARGLDNV  175

Query  184  VIAEHLFISPMTAKTHVNRAMSKLHVSD  211
             IA +LFISP T KTH+NRAM+KLH  D
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARD  203

5) MLP_34300 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  169 bits (626),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 108/219 (50%), Positives = 162/219 (74%), Gaps = 4/219 (1%)

Query  2    MITVVLVDDQGLVRSGLRALLANSDDIQVVGEAVDGRDALAVVARTKPDVVLMDIRMPRL  61
            MI VVLVDDQ+++R+GLR++L +++ I+V+GEA DGR A+AV+  ++PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   DGIAATRRIARTPELARVAIVMLTTFDGDDEIFAAIRAGAAGYLLKDAEPGELRDGIRAV  121
            DG++AT  +   P+L  V I++LTTFDGD+E++AA+RAGA G+L K A++  L  ++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AAGDVLLSASVTRKVMIGIVAGTCGPVDDH---RIAELTSREREVLAGVGRGLSNAEIAA  178
            A GD  LSA+ ++ V+ ++     ++ D +   R A LT RE +V+ G +RGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  EIHISPATARTYVSRMLSKLGARDRAQLVVIAYQTGLVA  217
            ++ ISPAT +T ++R ++KL ARDR+QLV IA+++GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

6) FraEuI1c_4331 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  168 bits (623),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 115/225 (52%), Positives = 165/225 (74%), Gaps = 8/225 (3%)

Query  5    IRVLLADDQELLRATFRLLLDAAPGIEVVGEAGTGREAVAVVRATNPDVVLMDIRMPDLD  64
            I V+L DDQ ++RA +R +L+ A GI V+GEA+ GR A AV+R++ PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIAATAQITADEALAGVHILVLTTFETDELVLAALRAGASGYLGKGVAPNTLLDAIRTVA  124
            G++ATA + AD  L +V+ILVLTTF+ DE VLAALRAGA G+L+K+  +++L+ A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGESLLSPTATTALV----RRFLASPQPRLDARLPAMTDLTAREREITVLVARGLSNEEI  180
             G++ LS+ A+ ++V    RR  ++ +  L AR ++   LT RE ++ +  ARGL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT---LTHRETDVVLGAARGLDNVSI  177

Query  181  AELLVISPATAKTHVNRAMTKVHARDRAQLVVFAYENGLMTPGGR  225
            A  L ISPAT KTH+NRAMTK+HARDR+QLV +A+ +GL+  + +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

7) Amir_6405 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  168 bits (620),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 111/220 (51%), Positives = 163/220 (75%), Gaps = 4/220 (1%)

Query  5    VLLADDQPLIRAGYRMILDSEPDLEVVGEAVNGREAVFLARTTRADVVLMDIRMPEVDGI  64
            V+L DDQ++IRAG R IL+ ++++ V+GEA +GR A  + R +R+DVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRRIAADEDLAGVRILVLTTFEEDENVLRAVRAGAAGFLGKNVGPAELLHAVRTVASG  124
             AT  + AD DL +VRILVLTTF+ DE+VL A+RAGA GFL+K+ ++  L+ AV +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  DSILSPAATKALVRHVLAHPESDPPQAP--APLELLTDREREVVVLAAHGLSNDRIAEHL  182
            D+ LS++A+K++V + L +    + +    A    LT+RE +VV+ AA+GL N  IA +L
Sbjct  123  DTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  183  HLSPLTAKTHVNRAMSKLNTRDRAQLVVLAYRTGLVRPDD  222
             +SP T KTH+NRAM+KL++RDR+QLV +A+R+GLV   +
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

8) MODMU_4192 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  167 bits (617),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 118/217 (55%), Positives = 158/217 (73%), Gaps = 1/217 (0%)

Query  1    MIRVMLVDDQEMIRVGLRSIIGAHADLEVVAEAGDGLAVLRQVDDVRPDVVLMDIRMPGI  60
            MI V+LVDDQ MIR GLR+I+  +A++ V++EA+DG + +  + + RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATRRIRLTHSPEQLRILVLTTFDQDENVLRALRAGADGFLSKGAGPTELTGAILAV  120
            DGV AT  +R     + +RILVLTTFD DE+VL ALRAGADGFL+K+A++  L +A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGSRALSPTAVSAVVDHVVQQRAVDLDPELTARFADLTPREREVVTAIVSGLDNAEIAE  180
            A G  +LS+ A  +VV ++ ++     D EL AR A LT RE +VV +   GLDN  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  RLFLSPFTVKTHANRAMTKVGARDRGQLVGMAVRAGI  217
             LF+SP TVKTH NRAMTK+ ARDRGQLV++A R+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

9) Kfla_6611 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  165 bits (610),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 164/214 (77%), Gaps = 2/214 (0%)

Query  18   VVLADDQALLRGAFRTLLDSTDDIAVVGEAGDGEEAVALTRRTHPDVVVMDIQMPGMDGL  77
            VVL DDQA++R+++R +L+ ++ I V+GEA+DG  A A+ R ++PDVV+MD++MP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  78   TATAQICADPDLRASRVLILTTYETDEYVAQALRAGASGFIGKGIDADGLIDAVRTIADG  137
             ATA + ADPDL A R+L+LTT++ DE V  ALRAGA GF++K+ D+++LI AV ++A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  138  DALLSPAATRSLVARFLATPVDTAPRD-VERLVALTPREREMVALVATGLSNLEIADRMY  196
            D+ LS++A++++V+ +      ++  + + R  +LT RE ++V   A GL N+ IA  ++
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  197  VSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL  230
            +SP TV++H++RAMTKL+ARDR+QLV+IA+R+GL
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

10) AORI_6724 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  165 bits (610),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 105/220 (48%), Positives = 160/220 (73%), Gaps = 6/220 (2%)

Query  1    MIRVLLVDDQRLVRAGFKSILDSEDDISVVAEAADGRESLEAAREHEPDVVLMDIRMPVM  60
            MI V+LVDDQ ++RAG+++IL+ + +I V++EAADGR ++   R   PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATRHLLGDPARAGTKVVILTTFDLDEDVYGALRAGASGFLVKDTEPEELIHAVRVV  120
            DG+ AT  L +DP   + ++++LTTFD DE+V +ALRAGA GFL K +++E LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRRLISEFAGRVDRPAPSPTL----NRLTEREREVMSLVAAGLSNDEIA  176
            A+GD+ L+++ ++ ++S++  R +R+A    L      LT+RE +V+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  KELVLSPATAKTHVSRIMTKVDVRDRAQLVVLAYESGMVT  216
            ++L +SPAT KTH++R MTK++ RDR+QLV +A+ SG+V 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

11) BN159_1987 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  164 bits (606),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 104/221 (48%), Positives = 162/221 (74%), Gaps = 8/221 (3%)

Query  1    MIRVALVDDQALMRAGFRALLDAEDGIEVVGEAADGERGVALVRAEAPDIALIDVQMPVM  60
            MI V LVDDQA++RAG+R++L+ + GI V+GEAADG  + A++R+  PD+ L+D++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   TGIEATRRIAADPALSDVRVVILTNYGHDEYVFEALRAGASGFLLKDTEPADLLQAIEVV  120
             G+ AT  + ADP L+ VR+++LT ++ DE V+ ALRAGA GFL K +++  L+ A+E V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGEALLSPSVTRTLIGEFVARPPDRATA-----PGLEGLTRREREVTALAARGLSNEEI  175
            A+G++ LS++ ++T+++++  R  +R+++     +    LT+RE +V   AARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  176  AEHMVISPFTAKTHVSRAMTKLGARDRAQLVVFAYESGLVT  216
            A ++ ISP T KTH++RAMTKL ARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

12) BN159_4331 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  164 bits (605),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 164/218 (76%), Gaps = 1/218 (0%)

Query  3    IRVLLADDQALLRATFRILIDSNPDMDVVGEASDGAEALELTRAHHPDVVLMDIRMPGTD  62
            I V+L DDQA++RA +R +++ ++++ V+GEA+DG  A+ + R+ +PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLSGTSAICADPALAATRVLILTTFETEDYVAQALRAGASGFLGKDVTADALLAGIRTVA  122
            G+++T+A+ ADP L A R+L+LTTF+ ++ V  ALRAGA GFL+K   +++L+A++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGDSLLSPGATRTLITRFLTSPAPGTQLAPPERLAELTGREREVMALAAEGKSNAEIAEL  182
             GD+ LS+GA++T+++ +     ++T++    R A LT RE +V+  AA G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVVSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLVQ  220
            L +SP TV+TH++RAMTKL+ARDR+QLV IA+++GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

13) SVEN_5416 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  164 bits (605),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 104/219 (48%), Positives = 162/219 (74%), Gaps = 3/219 (1%)

Query  1    MIRVVLADDQTLVRAGFRSILSDEEDLEVVGEAADGEQAIALARELRPDVVLMDIRMPVL  60
            MI VVL DDQ+++RAG+R+IL ++ ++ V+GEAADG  A+A+ R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITADERLEGVRVVILTTFDADDHVYGALRAGASGFLVKDTEPMELLHAVRVV  120
            DG+ AT  + AD  L++VR+++LTTFD+D++V +ALRAGA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALIAPAVTRRLIAEF--AGRAERRPDPSPRLNALTEREREVLGLVGAGLSNDEIAG  178
            A+GD+ ++++ ++ +++++   GR+    +  +R  +LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  RLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMIT  217
             L +SPAT KTH++R MTKL  RDR+QLV +A+ SG++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

14) Amir_4511 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  163 bits (602),  Expect = 8e-42, Method: Compositional matrix adjust.
 Identities = 110/227 (49%), Positives = 171/227 (76%), Gaps = 11/227 (4%)

Query  3    IRVLLADDQALIRAGFRMIVDADPGLEVVAEAADGARAVELACASRVDVVLMDLRMPDVD  62
            I V+L DDQA+IRAG+R I++ D+G+ V++EAADG  A  +  +SR DVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRICADERLAGVRVLVLTTFDDDENVITALQAGASGFLGKNVDPAELVTAIRVVA  122
            G+ AT  + AD  L +VR+LVLTTFD+DE+V++AL+AGA GFL+K+ D+  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGNALLSPKATRGLVSAFVAQSRPPAVAAPGLDLV------TGREREVMVLVAHGMSNDA  176
             G++ LS+ A++ +VS +  ++R+++    +++L+      T RE +V++  A+G+ N +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT----DVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IARHLFLSPLTVRTHVNRAMAKLGARDRAQLVVIAYQNRLVAPGDPS  223
            IAR+LF+SP TV+TH+NRAM+KL ARDR+QLV IA+++ LV  ++ +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

15) B737_7772 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 106/219 (49%), Positives = 162/219 (74%), Gaps = 5/219 (2%)

Query  1    MIRVLLVDDQRLVRAGFRSILDGEDDITVVAEAADGREALQAAHDHHPDVVLMDIRMPEL  60
            MI V+LVDDQ ++RAG+R+IL+ + +I V++EAADGR A+   ++ +PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRHLLEDPGVST-RVVILTTFDLDEDVYGALRAGASGFLVKDTEPEELIHAVRVV  119
            DG++AT  L  DP++++ R+++LTTFD DE+V +ALRAGA GFL K +++E LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALLAPSITRRLIAEFAARGTRPAASPALDR---LTDREREVLSLVAAGLSNDEIAR  176
            A+GD+ L+++ ++ +++++  RG  ++    + R   LT+RE +V+   A GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESGAVT  215
            +L +SPAT KTH++R MTK  ++DR+QLV +A+ SG V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

16) RAM_40545 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 106/219 (49%), Positives = 162/219 (74%), Gaps = 5/219 (2%)

Query  1    MIRVLLVDDQRLVRAGFRSILDGEDDITVVAEAADGREALQAAHDHHPDVVLMDIRMPEL  60
            MI V+LVDDQ ++RAG+R+IL+ + +I V++EAADGR A+   ++ +PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRHLLEDPGVST-RVVILTTFDLDEDVYGALRAGASGFLVKDTEPEELIHAVRVV  119
            DG++AT  L  DP++++ R+++LTTFD DE+V +ALRAGA GFL K +++E LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALLAPSITRRLIAEFAARGTRPAASPALDR---LTDREREVLSLVAAGLSNDEIAR  176
            A+GD+ L+++ ++ +++++  RG  ++    + R   LT+RE +V+   A GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESGAVT  215
            +L +SPAT KTH++R MTK  ++DR+QLV +A+ SG V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

17) AMES_7772 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 106/219 (49%), Positives = 162/219 (74%), Gaps = 5/219 (2%)

Query  1    MIRVLLVDDQRLVRAGFRSILDGEDDITVVAEAADGREALQAAHDHHPDVVLMDIRMPEL  60
            MI V+LVDDQ ++RAG+R+IL+ + +I V++EAADGR A+   ++ +PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRHLLEDPGVST-RVVILTTFDLDEDVYGALRAGASGFLVKDTEPEELIHAVRVV  119
            DG++AT  L  DP++++ R+++LTTFD DE+V +ALRAGA GFL K +++E LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALLAPSITRRLIAEFAARGTRPAASPALDR---LTDREREVLSLVAAGLSNDEIAR  176
            A+GD+ L+++ ++ +++++  RG  ++    + R   LT+RE +V+   A GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESGAVT  215
            +L +SPAT KTH++R MTK  ++DR+QLV +A+ SG V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

18) AMED_7890 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 106/219 (49%), Positives = 162/219 (74%), Gaps = 5/219 (2%)

Query  1    MIRVLLVDDQRLVRAGFRSILDGEDDITVVAEAADGREALQAAHDHHPDVVLMDIRMPEL  60
            MI V+LVDDQ ++RAG+R+IL+ + +I V++EAADGR A+   ++ +PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRHLLEDPGVST-RVVILTTFDLDEDVYGALRAGASGFLVKDTEPEELIHAVRVV  119
            DG++AT  L  DP++++ R+++LTTFD DE+V +ALRAGA GFL K +++E LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALLAPSITRRLIAEFAARGTRPAASPALDR---LTDREREVLSLVAAGLSNDEIAR  176
            A+GD+ L+++ ++ +++++  RG  ++    + R   LT+RE +V+   A GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESGAVT  215
            +L +SPAT KTH++R MTK  ++DR+QLV +A+ SG V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

19) SBI_06240 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (594),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 161/218 (74%), Gaps = 1/218 (0%)

Query  3    IRVVLADDQALLRATFRILIDSCSDMGVVAEAADGTEAVELTRAHHPDVVLMDIRMPGTD  62
            I VVL DDQA++RA +R +++  + + V++EAADG  A  + R+ +PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATTAVCSDPDLSATRVLILTTFETEEYVARALRAGASGFLGKDVTADALLTAIRTVA  122
            G++AT+A+ +DPDL+A R+L+LTTF+ +E V  ALRAGA GFL+K   +++L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGDALLSPLATRALITRFLATPAPGNHLAPPERLAVLTAREREVMALAAEGMSNHEIAER  182
             GD+ LS+ A++++++ +     ++ ++    R A LT RE +V+  AA G+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQSGLVT  220
            L +SP TV++H++RAMTKLHARDR+QLV +A++SGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

20) SBI_09282 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 158/218 (73%), Gaps = 4/218 (1%)

Query  4    LIRVVLADDQVLVRAGFRALLDAQPDIEVVGEAADGERAVAQVCEVRPDVVLMDIRMPQL  63
            +I VVL DDQ ++RAG+R++L+ +++I V+GEAADG  A A +   RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGLAATRRITEDPALAEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAV  123
            DG++AT  +  DP L  V++++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  VAGDALLSPGVTRRLIAEFAARSKEPAPAAVL---AELTEREREVMALVGIGLSNEEIAR  180
              GD+ LS+G ++ +++++  R++ ++   ++   A LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  RLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLV  218
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

21) Snas_2037 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  161 bits (594),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 105/217 (49%), Positives = 161/217 (75%), Gaps = 4/217 (1%)

Query  1    MIRTVLADDQTLVRAGFKSILDDEEDIEVVGEAPDGQQALELAQRLKPDVVLMDIRMPVL  60
            MI  VL DDQ+++RAG+++IL+D  +I V+GEA+DG+ A+ + +  +PDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIAADDRLAAVRVIILTTFDLDDYVYSALRAGAGGFLVKDTEPAELIHAVRVV  120
            DG+ AT  + AD  L AVR+++LTTFD D+ V +ALRAGA+GFL K +++  LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALIAPTITRRLLADFATQHRAP---QPNPRLNALTERETEVLGLIAAGLSNDEIAA  177
            A+GD+ +++  ++ +++D+  + R++   +  +R  +LT+RET+V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI  214
             LF+SPAT KTH++R M+KL ARDR+QLV +A+ SG+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

22) NOCYR_2007 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  160 bits (591),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 157/219 (72%), Gaps = 4/219 (1%)

Query  1    MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAGDGSAGLALARQHRPDIALIDIQMPVL  60
            MI V+LVDDQ++IR+G+R++L+ + +I V++EA+DG +++A+ R  RPD+ L+D++MP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIAADPELAGLHVVILTNYGMDEYVFEALRAGAAGFLVKDIEPEDFLHAVRVA  120
            DG+ AT  + ADP+L ++++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRRLID---RYVTSGPARPVTAGLDELTQREREAVVLVARGLSNHEIAE  177
            A+GD+ L+++ ++ ++    R   S+    + A    LT+RE + V+  ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVISPLTAKTHINRAMMKLHARDRAQLVILAYESGLVA  216
             L ISP T KTH+NRAM KLHARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

23) VAB18032_17540 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  160 bits (589),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 159/218 (73%), Gaps = 3/218 (1%)

Query  8    IKVLLADDEKLVRSGFKLLLDLEDDITVVGEATDGAEAVEAARSARPDVVVMDIRMPKLD  67
            I V+L DD+ ++R+G++ +L+ + +I V+GEA+DG  A    R++RPDVV+MD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIQATTQISRMRGLERVRILILTTYDTDANVFDALQAGASGFLLKDAGPAELLHAIRVVA  127
            G+ AT+ +    +L+ VRIL+LTT+D D +V+ AL+AGA GFL K A++  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  AGDALLAPRITRRLIGQFTARRTAAGAAQ--ERLAVLTDREREVLALVGRGLNNDEIGGE  185
             GD+ L++  ++ +++++  R  +A   +   R A LT+RE +V+   +RGL+N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  LFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGLVS  223
            LF+SPAT +TH++RAM+KL ARDR+QLV IA+++GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

24) Psed_5392 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  159 bits (586),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 105/217 (49%), Positives = 156/217 (72%), Gaps = 2/217 (0%)

Query  3    VRVLLADDQALVRAGFRALLDAQPGVGVVAEAADGREAVRLAVEQTPDVVLMDIRMPVLD  62
            + V+L DDQA++RAG+R++L+ ++G+ V++EAADGR A  +     PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATREIASDPRLSGVRVVVLTTFAEDEYVFEAIRSGASGFLVKDTEPAELVHAVRVVA  122
            G++AT  + +DP L++VR++VLTTF  DE V+ A+R+GA GFL K +++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDALLSPGVTRRLIEEFAVRSGPAGAVA-ASALTVLTDREREVVALVAGGLTNDDIAER  181
             GD+ LS+G ++ ++ ++  R+ +A  V   +  + LT+RE +VV   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV  218
            L +SPAT KTH++RAM KL  RDR+QLV +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

25) B446_06410 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  159 bits (586),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 108/223 (49%), Positives = 157/223 (71%), Gaps = 2/223 (0%)

Query  3    IRVLLADDQALLRGTFRMLFDSADDMETVGEASNGREAVELAAAERPDVVLMDIRMPELD  62
            I V+L DDQA++R+ +R +++ A+ +  +GEA++GR A  +  + RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDATRLISETDDLAAVKVLILTTFENDEYVAQALRAGASGFLGKGARPEELLDAVRTVA  122
            G++AT  +    DL AV++L+LTTF+ DE V  ALRAGA GFL+K+A +E L+ AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPGATRALITRFLAQPEPCTTV-VHERLECLTPRERDVTRLVALGQSNEEIAER  181
             G++ LS+GA++++++ +  +  + T V +  R   LT RE DV    A G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSPLTAKTHVNRAMTKLAARDRAQLVVIAYQCGLVSTTTEP  224
            LF+SP T KTH+NRAMTKL ARDR+QLV IA++ GLV+ + +P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

26) AMIS_35870 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  159 bits (586),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 158/219 (73%), Gaps = 4/219 (1%)

Query  1    MIRVLLADDQALMRAGFRALLDAEEGLEVVGECGDGAAAVDMAGKLRPDVVLMDVQMPGM  60
            MI V+L DDQA++RAG+R++L+ + G+ V+GE +DG +A  +    RPDVVLMD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRINADPGLAGVRVLILTNYELSEYVFASLRAGASGFLLKDADPATLLQAITTV  120
            DG+ AT  + ADP+L +VR+L+LT ++  E V+A+LRAGA GFL K AD+ +L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGEALLAPTVTRTLISEF-VSSRPPGDPA--AGRAVLTAREQEIVELVGRGLTNDEIAD  177
            A+G++ L++  ++T++S++   +R++ D    A  A LT RE ++V   +RGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QMVISPLTAKTHVNRAMIKLHCHDRAQLVVWAYESGLIA  216
            ++ ISP T KTH+NRAM KLH +DR+QLV  A+ SGL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

27) L083_5013 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  159 bits (586),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 106/221 (48%), Positives = 164/221 (75%), Gaps = 2/221 (0%)

Query  3    IRVLLADDQALIRAGFRMIIDSEPGFEVVAEAADGKEAVDLARTARADVVLMDIRMPRVD  62
            I V+L DDQA+IRAG+R I++ ++G+ V++EAADG+ A  + R +R+DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRIGADDSLAGVRVLVLTTFENDDNVVLALQAGASGFLGKGVAPEDLLHAIRVVA  122
            G+ AT  + AD  L +VR+LVLTTF+ D++V+ AL+AGA GFL+K+  +E L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPKATQGLVSRFLTSLRPPPD-GVAPGLDLLTDREREILVLVAHGLSNDDIAER  181
             G++ LS+ A++ +VS +    R++ D  + +    LT+RE ++++  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LYLSPLTAKTHVNRAMTKLGARDRAQLVVLAYQNGLVRQGD  222
            L++SP T KTH+NRAMTKL ARDR+QLV +A+++GLV +++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

28) Kfla_4302 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  158 bits (584),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 105/219 (48%), Positives = 155/219 (71%), Gaps = 6/219 (2%)

Query  1    MIRVLLADDQALVRAGFRSLLNAEDDITVIGEVSDGAQAVEVARAEKPDVVLMDIRMPGT  60
            MI V+L DDQA++RAG+R++L+ + +I VIGE +DG  A  V R+ +PDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRQIGAEEALSDVHVVILTTFDLDEYVFEALRVGASGFLVKDTEPVELLQAVRVV  120
            DG+ AT  + A+  L+ V++++LTTFD DE V+ ALR GA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLSPGVTRRLVAEFATRSRQPHASKEL----DVLTEREREIVALVGEGLSNDEIA  176
            A+GD+ LS+G ++ +V+++  R+R + +  EL      LT+RE ++V   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSA-TDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  ARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQTGLV  215
              L +SPAT KTH++RAM KL  RDR+QLV +A+++GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

29) Sros_1523 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  158 bits (584),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 102/218 (47%), Positives = 154/218 (71%), Gaps = 9/218 (4%)

Query  1    MIKIVLADDQALVRAGFRALLDAQPGMTVVAEAADGAQAVRLAAEHEPDVVLMDIRMPGM  60
            MI +VL DDQA++RAG+R++L+ ++G+ V++EAADG  A  +     PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATREMPPGP-----RIIILTTFELDEYVFEALRNGASGFLVKDTEPAELIQAVRVV  115
            DG+ AT  + ++P     RI++LTTF+ DE V+ ALR GA GFL K +++  LI AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  ADGDALLSPGVTRRLIAEYASRAKPPHPSQDLG---MLTDREREVLSLVGTGMTNDEIAG  172
            A GD+ LS+G ++ ++++   R++++   + ++    LT+RE +V+   + G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  KLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV  210
             LF+SPAT KTH++R+M KLHARDR+QLV IA+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

30) Strvi_0394 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  157 bits (581),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 161/218 (74%), Gaps = 1/218 (0%)

Query  3    IRVLLADDQALLRATFRILIDSCEDMTVVGEASDGAEALELTRAHHPDIVLMDIRMPGTD  62
            I V+L DDQA++RA +R +++   ++ V+GEA+DG  A+ + R+ +PD+VLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATSAICADPELAATRVLILTTFETEDYVAQALRAGASGFLGKDVTADTLLAGLRTVA  122
            G++AT+A+ ADP+L A R+L+LTTF+ ++ V  ALRAGA GFL+K   +++L+A++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGEALLSPAATRTLITNFLMSPAPDAHLAPPERLSELTGREREVMGLAAEGRSNTEIAEI  182
             G++ LS++A++T+++++     + +++    R + LT RE +V+  AA G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGLAQ  220
            L +SP TV+TH++RAMTKL ARDR+QLV IA+++GL +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

31) ACPL_1954 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  157 bits (579),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 106/223 (48%), Positives = 160/223 (72%), Gaps = 12/223 (5%)

Query  1    MISVVLADDQALVRAGFRALLDAEPDIRVVGEAADGVQAVTLVRATRPDVVLMDIRMPGV  60
            MI VVL DDQA++RAG+R++L+ +++IRV+GEAADG  A +++R++RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIVADPVCADTRVVILTTFELDEYVFEALRTGASGFLVKDTEPVELLRGVRAV  120
            DG+ AT  + ADP     R+++LTTF+ DE V+ ALR+GA GFL K +++  L+ +V AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGDALLSPSVTRRVIGEFAGSGTGRRPEPPRELD------QLTDREREVMALVAEGLSN  174
            A GD+ LS++ ++ V++++      RR  ++ +++       LT+RE +V+   A GL N
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-----RRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  175  DEIAARLVISPATAKTHVSRTMIKLGARDRAQLVVYAYEAGLI  217
              IA  L ISPAT KTH++R+M KL ARDR+QLV  A+ +GL+
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

32) KSE_59680 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  156 bits (577),  Expect = 7e-40, Method: Compositional matrix adjust.
 Identities = 108/217 (50%), Positives = 157/217 (73%), Gaps = 2/217 (0%)

Query  3    VRVLLADDQALLRGTFRLLIDSAPDLEVVGEAGTGREAVALARSLRADLVLMDIRMPDLD  62
            + V+L DDQA++R+ +R +++ A ++ V+GEA+ GR A A+ R+ R+D+VLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATALITADEDLAGVKVLILTTFENDEYVAEALRAGASGFLGKGIDPAELLDAVRLVA  122
            G++ATA + AD DL +V++L+LTTF+ DE V  ALRAGA GFL+K+ D+  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDALLSPAATKALIGRFLAQPDPVRRAAL-PRLDVLTAREQQVVALVAAGLSNDDIAER  181
             GD+ LS++A+K++++ +  +  +     L +R   LT RE +VV   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVTPLTAKTHVNRAMTKLGARDRAQLVVIAYETGLV  218
            LF++P T KTH+NRAMTKL ARDR+QLV IA+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

33) SHJG_2516 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  156 bits (577),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 107/218 (50%), Positives = 162/218 (75%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFRALLDAQPDIevageaadgeeaLRRVRELRPDVVLMDIRMPLL  60
            MI V+L DDQ+++RAG+R++L+ +++I V GEAADG  A+  +R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITSDPALADVKVVVLTTFEVDEYVFEAIRAGASGFLVKDTEPDELLRAVRAV  120
            DG++AT  + +DP L  V+++VLTTF+ DE V+ A+RAGA GFL K ++++ L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VEGDALLSPGVTRRLIAEFAARSKQPTAADALAR---LTEREREVMALVGIGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ +T  + +AR   LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

34) SHJGH_2280 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  156 bits (577),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 107/218 (50%), Positives = 162/218 (75%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFRALLDAQPDIevageaadgeeaLRRVRELRPDVVLMDIRMPLL  60
            MI V+L DDQ+++RAG+R++L+ +++I V GEAADG  A+  +R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITSDPALADVKVVVLTTFEVDEYVFEAIRAGASGFLVKDTEPDELLRAVRAV  120
            DG++AT  + +DP L  V+++VLTTF+ DE V+ A+RAGA GFL K ++++ L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VEGDALLSPGVTRRLIAEFAARSKQPTAADALAR---LTEREREVMALVGIGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ +T  + +AR   LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

35) SCAB_88551 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  156 bits (576),  Expect = 9e-40, Method: Compositional matrix adjust.
 Identities = 105/225 (47%), Positives = 162/225 (72%), Gaps = 6/225 (2%)

Query  3    VRVLLADDQALLRGTFRLLIDAQPDMEVVGEAANGREAVLLARSERAEVVVMDIRMPEVD  62
            + V+L DDQA++R+ +R +++ ++++ V+GEAA+GR A  + R+ R++VV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLIGQDEDLAGVKVLVLTTFEEDELVVEALRAGASGFLGKGVEPAHLLDAVRLVA  122
            G+ AT  +  D DL +V++LVLTTF+ DE V+ ALRAGA GFL+K+ ++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPAATKGLIA---RVLAAPSPGDLVDPRRLATLTPREREVLTLVGSGLSNDEIA  179
             G++ LS++A+K +++   R   +++  +L+   R ATLT RE +V+   + GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIA--RTATLTHRETDVVLGAARGLDNVSIA  178

Query  180  ERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETGLVRTGERQ  224
              LF++P TVKTH NRAMTKL ARDR+QLV IA+ +GLV  +E+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

36) BN159_0462 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  154 bits (568),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 162/219 (74%), Gaps = 4/219 (1%)

Query  1    MIRVLLADDQRLVRAGFRSILEDEDDIEVVGEAPDGQSAISACRELEPDVVLMDIRMPGM  60
            MI V+L DDQ ++RAG+R+ILED + I V+GEA+DG+SA++  R   PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEASRAIAGDERLASVKVVILTTFDLDDYVYGALRAGATGFLVKDTEPEELLQAVRVA  120
            DG+ A+ A+ +D  L +V++++LTTFD D+ V +ALRAGA GFL K +++E L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALISPSITRRLIAEFAGRVKSP---EPDSRLGALTEREREVMRLVAAGLTNDEIAA  177
            A+GD+ +S++ ++ +++++  R +S+   E  +R ++LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVLAPSTAKTHVSRIMSKLGARDRSQVVVLAYESGLVS  216
             L ++P+T KTH++R M+KL ARDR+Q+V +A+ SGLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

37) Tcur_0110 in NC_013510


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  154 bits (567),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 157/219 (72%), Gaps = 4/219 (1%)

Query  1    MIRVLLADDQRLVRAGFRSILADEDDIAVVGEAGDGEQTVEACRRLRPDVVLMDIRMPGM  60
            MI V+L DDQ ++RAG+R+IL ++ +I V+GEA+DG  +    R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITADPRLENVRVVILTTFDLDDYVYAALRGGACGFLVKDTEPQELIRAVRVA  120
            DG+ AT  + ADP L+ VR+++LTTFD D+ V AALR+GA GFL K ++++ LI AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALISPSVTRRLIAEFTGRVKAPAPD---PRLNALTEREREVMRLVAAGLSNDEIAG  177
            A+GD+ +S++ ++ +++++  R ++++     +R  +LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMVS  216
             L +SPAT KTH++R M+KL  RDR+QLV +A+ SG+V+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

38) ML5_0274 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (565),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 156/217 (72%), Gaps = 7/217 (3%)

Query  1    MIRLLLADDQTLVRAGFRSILDGEDGIEVVGEAADGTTAVRLTRERRPDVVLMDIRMPLL  60
            MI ++L DDQ+++RAG+R+IL+ + GI V+GEAADG +A  + R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATREIVAGTD---ARVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHGVRVV  117
            DG++AT  + A+ D    R+++LTTFD D+ V +ALRAGA GFL K +++  LI +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGDALIAPAVTRRLIAEFAARTRHP---EPGPRLNALTEREREVLALVAAGLSNDEIAA  174
            A+GD+ ++++ ++ +++++  R R +   E  +R  +LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL  211
             L +SPAT KTH++R MTK + RDR+QLV +A+ SGL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

39) HMPREF0573_10929 in NC_014246


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (565),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 102/225 (46%), Positives = 161/225 (72%), Gaps = 11/225 (4%)

Query  26   IKVLLVDDQSLIRMGFRMVLEAADDITVVGEAADGKTALQMVKATSPDVVLMDVRMPHMN  85
            I V+LVDDQ++IR G+R +LE A+ I V+GEAADG++A+ +++++ PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  86   GIEATSEIITGNPN---VKVLILTTFDLDEYAFAALRAGASGFLLKDAKPEELIGAIRNV  142
            G+ AT+ +  ++P+   V++L+LTTFD DE  +AALRAGA GFL K A +E LI+A+  V
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  143  AHGDATISPRVTKRMLEMFAPQLPGEQDEVEEANLVDKALLDSLTDRETEVLTLIAQGLT  202
            A GD+++S+  +K ++    ++L        + +L+ ++   +LT+RET+V+   A+GL 
Sbjct  120  AKGDTSLSAGAAKTVV----SDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLD  173

Query  203  NQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGLVS  247
            N  IA +LFIS +TVKTH+   + K+ ARDR Q V +A+ +GLV+
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

40) Caci_7160 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (564),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 104/220 (48%), Positives = 166/220 (76%), Gaps = 3/220 (1%)

Query  3    IRVVIADDQPLLRTGFSALVGSAPDLEVVGEAGDGREAVRLAKAAQADVVLMDIRMPVLD  62
            I VV+ DDQ+++R+G+ +++  A ++ V+GEA+DGR A  + +++++DVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLITGDEDLAGVKVLILTTFEIDEYVFEALRAGASGFLGKSAEADELLAAIRTVE  122
            G++AT  + +D DL +V++L+LTTF+ DE V+ ALRAGA GFL+KSA+++ L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDALLSPAATKALISRFLTTPVAPRQLDQAQRGALDALTDRERQITGFVAEGLSNDEIA  182
            +GD+ LS++A+K+++S +     ++ +++   R A  +LT+RE ++    A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSIA  178

Query  183  ARLVLSPATVKTHVNRAMVKVGARDRAQLVVFAHRSGLAS  222
              L +SPATVKTH+NRAM K+ ARDR+QLV +A RSGL +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

41) Krad_1198 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (564),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 106/225 (48%), Positives = 158/225 (71%), Gaps = 19/225 (8%)

Query  10   VVVDDQAMIRAGFSALLDAQPGVEVVGQAADGEEAVEVVTATTPDVVLMDVRMPVLDGLE  69
            V+VDDQAMIRAG+ ++L+ ++G+ V+G+AADG  A  V+ ++ PDVVLMD+RMP+LDG+ 
Sbjct  5    VLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  70   ATRRILAAGLDPAP-----RVLVLTTFDVDDYVFSALQAGASGFLLKDATPEVLVDSVRA  124
            AT     A+L + P     R+LVLTTFD D+ V++AL+AGA GFL K A +E L+ +V A
Sbjct  64   AT-----AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  125  VARGDSLLAPGITRRLIEHFVSTRRRA-----VDVPAALADLTPREREVLVCIARGLSNQ  179
            VA+GD+ L++G ++ ++ ++   RRR+     V++ A  A LT RE +V++  ARGL N 
Sbjct  119  VAKGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  180  EIAAELFIAEQTTKTHVSRVLTKLGLRDRVQAVVLGYEIGLVSPG  224
             IA +LFI+  T KTH++R +TKL  RDR Q V +++  GLV+ +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

42) YM304_34340 in NC_020520


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (564),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 156/221 (71%), Gaps = 5/221 (2%)

Query  1    MIRVMLVDDQAMVRTGFRMILEAEPDISVVGEAVDGLDAVEMVDRARPDVVLMDVRMPRM  60
            MI V+LVDDQAM+R+G+R ILE +++I V+GEA DG  A  ++  +RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEACDRICQGED--SPRVMMLTTFDLDDYVHAALRAGASGFMLKDAPPEQLVDAIHIV  118
            DG+ A   +  + D  + R+++LTTFD D+ V AALRAGA GF+ K A +E L+ A++ V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ANGDAMLAPSVTQTLIDEIARRPQGQPDA--FPGISELTSREQDVIRLMAKGLSNAEIAT  176
            A+GD+ L+++ ++T++ ++ RR ++  D   ++  + LT RE DV+   A+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELILGEATIKTHVGRVLSKLGARDRVQAVVAAYESGLVTPG  217
            +L+++ AT+KTH+ R ++KL ARDR Q V  A+ SGLV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

43) XNR_4715 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  153 bits (564),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 105/220 (48%), Positives = 164/220 (75%), Gaps = 4/220 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEAADGDQALALARAARPDVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEAADG  A+A+ R++RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLISADPALDTVRVVMLTTFEVDEYVVRALRAGASGFLGKGSEPAELLGAIRVAH  122
            G++AT  + ADP L++VR+++LTTF+ DE V+ ALRAGA GFL+K++++  L++A+    
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPAATKGLIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGLSNDEI  182
             G++ LS++A+K +++  L + G++A +       R A+LT RE +V++  A GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATD--VELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AGRLQVSPLTVKTHVNRAMAKLGARDRAQLVVTAYETGLV  222
            A  L +SP TVKTH+NRAM+KL ARDR+QLV  A+ +GLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

44) Micau_0299 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 155/217 (72%), Gaps = 7/217 (3%)

Query  1    MIRLLLADDQTLVRAGFRSILDGEDGIEVVGEAADGTTAVRLTRELRPDVVLMDIRMPLL  60
            MI ++L DDQ+++RAG+R+IL+ + GI V+GEAADG +A  + R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATREIVAGTD---ARVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHGVRVV  117
            DG++AT  + A+ D    R+++LTTFD D+ V +ALRAGA GFL K +++  LI +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGDALIAPAVTRRLIAEFAARTRHPDPG---PRLNALTEREREVLALVAAGLSNDEIAA  174
            A+GD+ ++++ ++ +++++  R R +      +R  +LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL  211
             L +SPAT KTH++R MTK + RDR+QLV +A+ SGL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

45) MTES_0203 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 157/221 (72%), Gaps = 2/221 (0%)

Query  1    MTTVIVVDDQALIRTAVRDLLDAAEGISVVGEAADGEAGVDLARRLRPDVVVSDIRMPRR  60
            M  V++VDDQA+IR+++R++L+ A GI V+GEAADG ++  + R  RPDVV+ D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIELTALVCDDPALTETRVLILTTFEEDDYVVAALRAGASGFIGKGAEPEDIVRAVLSV  120
            DG+  TA +  DP L   R+L+LTTF+ D+ V+AALRAGA GF++K+A++E ++ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HEGGALLSPAATRALIEKY-VRTTGAADVPSPVSLDALTDREREVLLHVARGRSNDEIAA  179
              G++ LS++A+++++     R  +A+DV       +LT+RE +V+L  ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  HLYISPHTAKTHVKNTMLKLGAHDRAQLVIAAYESGLLAPG  220
            +L+ISP T KTH++ +M KL A+DR+QLV  A+ SGL+  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

46) Namu_3387 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/218 (49%), Positives = 155/218 (72%), Gaps = 2/218 (0%)

Query  3    VRVLLADDQALIRGGFAALIDSADDLAVAGEAIDGADAVRQARALRPDVVLMDVRMPGLD  62
            + V+L DDQA+IR+G+ ++++ A+ + V GEA DG  A    R+ RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAACAQITGDPALAQVKVLVLTTFEQDDYILAALQAGASGFLGKGASPTQLLDAIRVIA  122
            GV+A A + +DP L  V++LVLTTF+ D+ +LAAL+AGA GFL+K+A +  L+ A+  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGESLLSPRATRVVIERalaapgaatpdeaagpdLSVLTEREREIVGLVAQGLSNDEIAA  182
            +G++ LS+ A++ V+        +AT  E  +   + LT+RE ++V   A+GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLYLSPLTAKTHVNRAMTKLGARDRAQLVVLAYRAGLV  220
             L++SP T KTH+NRAMTKL ARDR+QLV +A+R+GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

47) Kfla_2026 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 97/222 (44%), Positives = 160/222 (73%), Gaps = 10/222 (4%)

Query  1    MIRVVLVDDQPLIRTGIRALLDAEDDIDVVAEGSNGVEGVDLAVEHRPDVVLMDVQMPLM  60
            MI VVLVDDQ++IR+G+R++L+ + +I V++E+++G  +  +    RPDVVLMD++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIAGDARLADVHVVILTNYGLDEYVFNALRAGASGFLVKDTEPVDLLQALRVV  120
            DG+ AT  + +D+ L  V++++LT ++ DE V+ ALRAGA GFL K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  IRGDALLSPTVTRRLISEFVARPPDVVSTAGLEL------LTPREREVLALVAHGLSNDQ  174
             +GD+ LS+  ++ ++S++  R     S++++EL      LT RE +V+   A+GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGR---SATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVIAYQSGLVS  216
            IA  + +SP+T KTH++RAM+KL+ARDR+QLV IA++SGLV+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

48) Gobs_2015 in NC_013757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 105/226 (47%), Positives = 163/226 (73%), Gaps = 6/226 (2%)

Query  3    VRVLLADDQVLIRSGFAALVNSADDLKVVGEAGDGAEAVRQAGALRPDVVLMDIRMPGVD  62
            + V+L DDQ +IR+G+ ++++ A+ ++V+GEA+DG  A     + RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLTAARQIAASPDLSEVRIIVLTTFEADEYVVEALRSGASGFLGKSVEPDELLDAIRVVA  122
            G+ A+  + A PDL+ VRI+VLTTF++DE V+ ALR+GA GFL+KS +++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDALLSPRATRSLIARFLAQPGRSgpdpdgpapvdaaldvLTEREREMVALVAHGLSNE  182
            +GD+ LS+ A++++++  L + GRS         + A    LT+RE ++V   A+GL N 
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRS----ATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  183  DIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLAYQTGLVRAGD  228
             IA  L +SP TVKTH+NRAM+KL+ARDR+QLV +A+++GLV  ++
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

49) SBI_07465 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (556),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 104/223 (47%), Positives = 159/223 (72%), Gaps = 4/223 (1%)

Query  3    IRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRQAVDVSRGTHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEA+DGR A  V RG++PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAARRILDPPPGVTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRI  122
            G+ A+   L + P++ +  ++L+LTTFD D+ V  ALRAGA GFL K A +  LI+AV  
Sbjct  61   GVGATA-ALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGEALLAPSVTRRLIADFARQ-RPAPRKNFAARRSGLTPRETEVLELIARGLSNQEIA  181
            VA G++ L+++ ++ +++D+ R+ R+A   ++ AR + LT RET+V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVTPGQ  224
              L ++  TVKTH+ R ++KL  RDR+Q V +A+ SGLV  ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

50) FRAAL0665 in NC_008278


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (557),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 155/218 (72%), Gaps = 6/218 (2%)

Query  1    MIRVVIADDQPLVRLGLRVLIETEDDLDLVGEAEDGRAAVDIVRATRPDVVLLDIRMPVV  60
            MI VV+ DDQ+++R GLR ++E + ++ ++GEA DGR+A  ++R++RPDVVL+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAALRTIVADPRLAATRIVIVTTFEVDEYVFEALRAGASGFVLKDTEPADLLRAIRVV  120
            DG++A  ++ ADP L A RI+++TTF+ DE V+ ALRAGA GF+ K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGESLLSPTVTRLVIDTFARRP-AVTAPDL----SGLTVREREVMSLVGRGMSNDEIAA  175
            A G++ LS+  ++ V+  + RR  + T  +L    + LT RE +V+   +RG+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLVISPATARTHVSRVMVKLAARDRAQLAVLANQAGLV  213
             L ISPAT +TH++R M KL ARDR+QL  +A ++GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

51) FsymDg_2414 in NC_015656


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  151 bits (556),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 156/221 (71%), Gaps = 6/221 (2%)

Query  1    MIRVVVADDQPLVRLGLRVLIDSEDDLELVGEAEDGRKAIAVVQRTRPDVVLLDIRMPVL  60
            MI VV+ DDQ+++R GLR +++ + ++ ++GEA DGR A+AV++ +RPDVVL+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLSALRAIVEDPHLDQTRAVMVTTFELDEYVFEALRSGASGFVLKDAEPAELLRAIRVV  120
            DG++A  A+  DP+L+  R +++TTF+ DE V+ ALR+GA GF+ K A++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGESLLSPTVTRRVIDAFARRP-AVHTPDL----SGLTAREREVMGLVGRGLSNDEIAQ  175
            A G++ LS+  ++ V+  + RR  +    +L    + LT RE +V+   +RGL N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMVTPS  216
             LFISPAT +TH++R M KL ARDR+QL  +A ++G+V  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

52) SCG22.16c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 106/218 (49%), Positives = 162/218 (75%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFRALLDAQPDIevvaeaadgeeavRSIRELRPDVVLMDIRMPLL  60
            MI V+L DDQ+++RAG+R++L+ +++I V++EAADG  A   IR  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAV  120
            DG++AT  + +DP+L  VR+++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VDGDALLSPGVTRRLIAEFAVRSKEPAAPGEMAR---LTEREREVMALVGIGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ ++    +AR   LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

53) Bcav_1731 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 100/216 (47%), Positives = 154/216 (72%), Gaps = 3/216 (1%)

Query  10   IGVLIVDDQDLVRIGLRTLLEHAGGFAVAGEAADGLGAVESAIRLRPDVVLMDIRMPGID  69
            I+V++VDDQ ++R GLR +LE+AG + V GEAADG +A       RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GLEATRRIVSDGRLADTKVIVLTTFERDEYVFEALRAGASGFLLKNTPPPVLLDGIRTVV  129
            G+ AT  + +D  L   +++VLTTF+ DE V+ ALRAGA GFL K++ +  L+ ++ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  130  DGGALLSPTVTRTVIAEFTSRSPRPLDPH--PHIDQLTNREHEVVSLVAQGLSNEEIGKR  187
             G++ LS+  ++TV++++  R+  + D +  ++   LT+RE +VV   A+GL N  I++ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  188  LYVSPATARTHVSHAMLKLSARDRAQLVVFAFQSGL  223
            L++SPAT +TH+++AM KL ARDR+QLV +AF+SGL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

54) BN159_5779 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (553),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 155/220 (71%), Gaps = 5/220 (2%)

Query  3    IRVLLADDQTLVRAAFAMLVESAADMEVVGQAATGREALELARKERADLVVMDIRMPDLD  62
            I V+L DDQ+++RA++  ++E A+ + V+G+AA GR A+ + R  R+D+V+MD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLIAADEDLAGVRVLVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVA  122
            G+ AT  + AD DL +VR+LVLTT+D DE+++ ALRAGA GFL K + +  L+ A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPGPTARLIARFLRSPSTPA----VGGPEGLSEREREVLTLVARGLNNTEIAEA  178
             G++ LS+G++  +++ + R   +++    ++    L++RE +V+   ARGL+N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPG  218
            L +SP T KTH++R M KL ARDR+QLV +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

55) Sros_4508 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (553),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 160/221 (73%), Gaps = 9/221 (4%)

Query  1    MIRVLLVDDQALIRGGFRALLEIEDDIEVVAEAVNGEQGVALALEHRPDVALVDIQMPVM  60
            MI V+LVDDQA+IR+G+R++LE + +I V++EA +G  + A+    RPDV L+D++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRLIAADERLSGVHVVILTNYGLDEYVFNALRAGACGFMVKDTEPADLLQGVRVA  120
            DG+ AT  + AD  L++V++++LT ++ DE V+ ALRAGA GF+ K +++  L+ +V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLSPAITRRLIAEYVARRPASAPEGLDV------LTNREREVTALVARGLSNDEI  174
            A+GD+ LS++ ++ ++++   RR + ++ ++++      LT+RE +V    ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  175  AVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGLVT  215
            A ++ ISP+T KTH++RAMTKL+ARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

56) AORI_3917 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (552),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 101/225 (45%), Positives = 157/225 (70%), Gaps = 7/225 (3%)

Query  1    MISVVIADDQTMVRQSFRAVLDAQHDIRVVGEAADGNTAVALCTELEPDVVLMDVRMPEL  60
            MI VV+ DDQ+M+R ++R++L+ + +IRV+GEAADG +A A+     PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATR--RIVAGLPEVRVLILTTFDIDEYVFGGLRAGASGFLLKDSPLDDLVTAVRVV  118
            DG+ AT   R  ++L  VR+L+LTTFD DE V+++LRAGA GFL K +  + L++AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  SAGNALFAPTITRRLIGEFTRTHASAHTGHSLV---AELTARETEVLRLIARGLSNVEIA  175
            + G++ +++  ++ +++++ R ++ + T+  L+   A LT RET+V+   ARGL NV IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  176  EALVIAEQTAKSHVSRVFTKLGVRDRAQAVMVAYEAGLVVPGNTP  220
              L I+  T K+H++R  TKL  RDR+Q V +A+ +GLV  ++ P
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

57) Francci3_0303 in NC_007777


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  150 bits (552),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 153/218 (71%), Gaps = 5/218 (2%)

Query  1    MIRVAVADDQPLVRLGLRVLIETEDDLELVGEAEDGRAAVELVRATRPDVVLLDIRMPVL  60
            MI V + DDQ+++R GLR ++E + ++ ++GEA DGR+A  ++R++RPDVVL+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAALRTIVEDPDLAATRVVMVTTFELDEYVFEALRGGASGFVLKDTEAADLLRAIRVV  120
            DG++A  ++  DPDL A R++++TTF+ DE V+ ALR+GA GF+ K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGESLLSPTVTRLVIETFARRPAAVAAPDL----RGLTVREREVMSLVGHGLSNDEIAA  176
            A G++ LS+  ++ V+  + RR  + +  +L      LT RE +V+   ++GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLVISPATARTHVSRVMVKLAARDRAQLAVLAHQAGLV  214
             L ISPAT +TH++R M KL ARDR+QL  +A ++GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

58) B737_8099 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 101/215 (47%), Positives = 151/215 (71%), Gaps = 6/215 (2%)

Query  5    ILLCDDQQLVRVGLRMIVESQDDLTVVGEAANGEQAITLARDLRPDLVLMDVRMPVLDGV  64
            ++L DDQ ++R GLR I+E + ++ V+GEAA+G  A+++ R+ RPD+VLMD+RMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATA--RICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAPSEEMLVAIRGVLRG  122
            +ATA  R  ++L  VR+L++TTFD DE   AALR+GA GFL K A SE ++ A+ +V +G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DSMVSPSVTRRLLDRYLADERDPMD---IARLGVLTEREKDVLGLIARGLSNSEIAAKLY  179
            D+ +S++ ++ ++       R + D   IAR + LT+RE DV+   ARGL N  IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  IGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV  214
            I+ +TVKTH+ R + KL+ RDR + V +A+ SGLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

59) RAM_42240 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 101/215 (47%), Positives = 151/215 (71%), Gaps = 6/215 (2%)

Query  5    ILLCDDQQLVRVGLRMIVESQDDLTVVGEAANGEQAITLARDLRPDLVLMDVRMPVLDGV  64
            ++L DDQ ++R GLR I+E + ++ V+GEAA+G  A+++ R+ RPD+VLMD+RMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATA--RICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAPSEEMLVAIRGVLRG  122
            +ATA  R  ++L  VR+L++TTFD DE   AALR+GA GFL K A SE ++ A+ +V +G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DSMVSPSVTRRLLDRYLADERDPMD---IARLGVLTEREKDVLGLIARGLSNSEIAAKLY  179
            D+ +S++ ++ ++       R + D   IAR + LT+RE DV+   ARGL N  IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  IGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV  214
            I+ +TVKTH+ R + KL+ RDR + V +A+ SGLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

60) AMES_8098 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 101/215 (47%), Positives = 151/215 (71%), Gaps = 6/215 (2%)

Query  5    ILLCDDQQLVRVGLRMIVESQDDLTVVGEAANGEQAITLARDLRPDLVLMDVRMPVLDGV  64
            ++L DDQ ++R GLR I+E + ++ V+GEAA+G  A+++ R+ RPD+VLMD+RMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATA--RICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAPSEEMLVAIRGVLRG  122
            +ATA  R  ++L  VR+L++TTFD DE   AALR+GA GFL K A SE ++ A+ +V +G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DSMVSPSVTRRLLDRYLADERDPMD---IARLGVLTEREKDVLGLIARGLSNSEIAAKLY  179
            D+ +S++ ++ ++       R + D   IAR + LT+RE DV+   ARGL N  IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  IGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV  214
            I+ +TVKTH+ R + KL+ RDR + V +A+ SGLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

61) AMED_8225 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 101/215 (47%), Positives = 151/215 (71%), Gaps = 6/215 (2%)

Query  5    ILLCDDQQLVRVGLRMIVESQDDLTVVGEAANGEQAITLARDLRPDLVLMDVRMPVLDGV  64
            ++L DDQ ++R GLR I+E + ++ V+GEAA+G  A+++ R+ RPD+VLMD+RMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATA--RICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAPSEEMLVAIRGVLRG  122
            +ATA  R  ++L  VR+L++TTFD DE   AALR+GA GFL K A SE ++ A+ +V +G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DSMVSPSVTRRLLDRYLADERDPMD---IARLGVLTEREKDVLGLIARGLSNSEIAAKLY  179
            D+ +S++ ++ ++       R + D   IAR + LT+RE DV+   ARGL N  IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  IGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV  214
            I+ +TVKTH+ R + KL+ RDR + V +A+ SGLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

62) Snas_3287 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (550),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 158/223 (71%), Gaps = 6/223 (2%)

Query  1    MITVVLVDDQPLLRSGFRALLDLEDDIEVVAEASDGAQGLALIRQHLPDIALLDIQMPDM  60
            MI VVLVDDQ+++R+G+R++L+ + +I V++EA+DG  ++A+IR   PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRHIAADPRLAAVRVVILTNYGFDEYVYDALRAGATGFLVKDIQPDDFLHAVRVA  120
            DG+ AT  + ADP L AVR+++LT ++ DE V  ALRAGA GFL K  +++ ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRRLISRYVTQPRNTGTGVGL----EDLTNREREAVALVAQGLTNDEIA  176
            A+GD+ L+++ ++ ++S    + R ++T+V L      LT+RE + V   A+GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGR-SATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  DHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESGLVVPGD  219
             ++ ISP T KTH+NRAM+K  ARDR+QLV +A+ SGLV  ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

63) nfa30350 in NC_006361


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 105/219 (48%), Positives = 155/219 (71%), Gaps = 6/219 (2%)

Query  1    MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAGDGAEGIALAARHLPDIALIDIRMPVL  60
            MI V+LVDDQ++IR+G+R++L+ + +I V++EA+DG  ++A+     PD+ L+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIETTRRIAADPALAGVHVVVLTNYGMDEYVFHALRAGAAGFLVKDIRPEDFLHAVRVA  120
            DG+ +T  + ADP L +V+++VLT ++ DE V+ ALRAGA GFL K   +E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRRLIDRF-VTEPLAADVE----TAGLTTREREAVVLAARGLSNDEIAE  175
            A+GD+ L+++ ++ ++  +      A+DVE    TA LT RE + V+ AARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RMVISPLTAKTHINRAMTKLHARDRAQLVIRAYESGLVA  214
             + ISP T KTH+NRAMTKLHARDR+QLV  A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

64) BN6_84250 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 159/218 (73%), Gaps = 6/218 (2%)

Query  1    MIRVLVADDQALVRGGFRVLVDSEPDMTVVGEAGDGGTAAALARELRPDVVLMDVQMPGV  60
            MI V++ DDQA++R+G+R +++ ++++ V+GEA+DG +A A+ R  RPDVVLMD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEAIRRIAADPELGGVRILILTTFDEDDYVIEGLAAGASGFLLKNTDPGQLLHGIRVV  120
            DG+ A   + ADP+L +VRIL+LTTFD D+ V+ +L AGA GFL K++D+  L+ ++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AGGEELLSPGltrrliartttraaVDHDV-----FAQLTAREREVVALVAQGLGNDEITR  175
            A G+  LS+G ++ +++    R+    DV      A LT RE +VV   A+GL+N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ELVISPATTKTHVSRALAKLGARDRAQLVALAYRHGLV  213
            +L ISPAT KTH++RA++KL ARDR+QLV++A+R GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

65) F750_2691 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 160/218 (74%), Gaps = 2/218 (0%)

Query  3    IRVLLADDQALLRATFRILIESDPGMTVVAEAADGREAIDLTLEHGPDVVLMDIRMPGTD  62
            I V+L DDQA++RA +R ++E D+G+ V++EAADGR A+ +     PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATTDICSRPELAATRVLILTTFEDDQNVAEALRAGASGFLGKDVGADVLLTGIRTVA  122
            G++AT+ + + P+L A R+L+LTTF++D++V  ALRAGA GFL+K  +++ L++++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGESLLSPTATRALITRF-LATpdeaplappeglaalTDREREVMALAAHGKSNADIADR  181
             G++ LS+ A++++++ +       + +      A+LT+RE +V+  AA+G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVVSPLTVRSHIQRAMNKLHARDRAQLVVIAYQSGLVQ  219
            L +SP TV++H++RAM KLHARDR+QLV IA++SGLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

66) Gbro_4119 in NC_013441


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 99/224 (45%), Positives = 160/224 (72%), Gaps = 3/224 (1%)

Query  5    IRVLLADDQPLVRSGFGALLDAEDDIDVIAQAGDGAEAIELARSHHPDVAILDIRMPGTD  64
            I V+L DDQ+++R+G+ ++L+ + +I VI++A+DG  A+ + R+ +PDV ++D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLTATRTITANPDLAEVKVLILTTFELDEYVFEAVAAGASGFLVKHTQPEELVRAVRVIA  124
            G+ AT ++ A+PDL  V++L+LTTF+ DE V+ A+ AGA GFL K +++E L+ AV  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGDALLSPSVTRRLISRFADAGRSpttpvtpgggpvSALTERETEVVRLVADGLSNEEIA  184
             GD+ LS++ ++ ++S +   GRS  +      +  ++LT+RET+VV   A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRS--ATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  185  QRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGLATPPQH  228
            +   +S ATV+TH++RAMTKL+ARDR+QLV +A+R GL   ++H
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

67) Sfla_4447 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  148 bits (546),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 152/223 (69%), Gaps = 3/223 (1%)

Query  3    IRVIIVDDQAMVRAGFAALLSAQSDIDVVGEAPDGRKGVEVSRSVHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEA+DGR +  V R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAARELLTPPKGAVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRV  122
            G++A+  L + P   ++  ++L+LTTFD D+ V  ALRAGA GFL K A +  LI+AV  
Sbjct  61   GVGATAALRADP--DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGDALLAPSVTRRLIADFARRKPAAPSGGPALRLNGLTPREREVLELIARGLSNQEIA  182
            VA GD+ L+++ ++ +++D+ RR  +A       R   LT RE +V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVTPGE  225
              L ++  TVKTH+ R ++KL  RDR+Q V +A+ SGLV  +E
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

68) F750_2246 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  148 bits (546),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 152/223 (69%), Gaps = 3/223 (1%)

Query  3    IRVIIVDDQAMVRAGFAALLSAQSDIDVVGEAPDGRKGVEVSRSVHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEA+DGR +  V R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAARELLTPPKGAVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRV  122
            G++A+  L + P   ++  ++L+LTTFD D+ V  ALRAGA GFL K A +  LI+AV  
Sbjct  61   GVGATAALRADP--DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGDALLAPSVTRRLIADFARRKPAAPSGGPALRLNGLTPREREVLELIARGLSNQEIA  182
            VA GD+ L+++ ++ +++D+ RR  +A       R   LT RE +V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVTPGE  225
              L ++  TVKTH+ R ++KL  RDR+Q V +A+ SGLV  +E
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

69) Celf_2706 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  148 bits (545),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 150/218 (69%), Gaps = 15/218 (6%)

Query  1    MIRVLLADDHPVVRSGLAGMLGLEPDLEVVGEAADGEQAVALAAELRPHLVLMDLRMPVL  60
            MI V+L DD++++R+GL G+L  ++++ V+GEAADG  A A+    RP++VLMDLRMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGAAATA--RITGTLPGVRVLVLTTYETDTDILRAVEAGATGYLLKDTPRDQLVAGVRAA  118
            DG +ATA  R    L +VR+LVLTT++ D ++L A+ AGA G+L K +  + L+A+V A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGESALSPSVARRLVQQVR------------GEQERLTAREQEVLAGVARGLSNAGIGR  166
            A+G+++LS++ A+ +V ++R            +    LT RE +V+ G ARGL N +I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  167  ELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL  204
            +LFI+ ATVKTHL RA +KL   DR + V++A+  G++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

70) O3I_033565 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  148 bits (544),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 98/227 (44%), Positives = 159/227 (71%), Gaps = 7/227 (3%)

Query  3    IRVLLADDQALLTGTFRLLIDSAVDMEVVGIAGNGSEAIDLARSTQPDVVVMDIRMPGVD  62
            I V+L DDQA++ + +R +++ A ++ V+G A++G  A+ + R+++PDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATKEICDDPALRRTRVLILTTFELDEYVAQALRAGASGFLGKDVGPEELLGGIRSVA  122
            G++AT  +  DP L   R+L+LTTF+ DE V  ALRAGA GFL+K  ++E L++++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDALLSPTATRTLIA--RYLALPENRISAGDPVEILTAREREVVVLVASGLSNEAIAEK  180
             GD+ LS+ A++T+++  R  + +   +        LT RE +VV+  A GL N +IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  MYVSPLTIRTHVQRAMSKLDVQNRAQLVVIAFQSGLVRIEAPRREHP  227
            +++SP T++TH++RAM+KL+ ++R+QLV IAF+SGLV     R EHP
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV----NRAEHP  223

71) Snas_4662 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  148 bits (544),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 150/218 (69%), Gaps = 4/218 (1%)

Query  1    MTRVLLADDQPLIRAGFRVLLDAEDDIDVVGEASTGAEAVDLARETVPDIALVDVQMPEM  60
            M  V+L DDQ++IRAG+R +L+ + +I V+GEA+ G  A  + R + PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIAADPALSSVRVVILTNYALDEYIFDALRAGASGFLVKDTEPEELIRAVRTV  120
            DG+ AT  + ADP L++VR+++LT +  DE ++ ALRAGA GFL K +++E LI AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AVGEALLAPNVTRRLIAEFAATPRVDGPAPLV---SALTPREREVVTLVGQGKSNEEISR  177
            A G++ L++  ++ +++++    R      L+   ++LT RE +VV   ++G  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  LLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGLV  215
             L IS +T KTH++RAMTKL +RDR+QLV  A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

72) Franean1_3390 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 105/221 (48%), Positives = 155/221 (71%), Gaps = 2/221 (0%)

Query  3    IRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPGTD  62
            I V+L DDQ+++RA +R +++  + + V+GEAADG+ A A  R  RPDVV+MD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATAAICGDETLAATRVLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRTVA  122
            G++ATAA+ +D  L A R+L+LTTF+ DE V  ALR GA GFL+K  +++ L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGDALLSPAATRVLISRFLATPEPAATATVNPVALAALTAREREVMALVAEGYSNHEIAD  182
             GD+ LS++A++ ++S  L     +AT        A+LT RE +V+   A G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTA  223
             L ISP T +TH++RAM+KL+ARDR+QLV IA++SGL++ A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

73) Caci_3748 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (542),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 161/219 (74%), Gaps = 4/219 (1%)

Query  16   VVLADDQDLVRAGLRLMIDRAPGLAVVGEAATGHDAVRIAREARADVVLMDIRMPGLDGL  75
            VVL DDQ ++RAGLR +++  +G+ V+GEAA G+ A  + R +R+DVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  76   AATRRIAADDSLAGVRVLILTTFEVDDYVFEALRSGASGFLGKGARPDALIDAIRTVARG  135
            +AT  + AD  L +VR+L+LTTF+ D+ V+ ALR+GA GFL+K+A +++LI A+ +VA+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  136  DALLSPSATRGLIARFLSLQDTEPVHPSPllttltdrereltALVAD--GMSNTDIARQL  193
            D+ LS++A++ +++  L  ++  + +   +  T T  +RE   +++   G+ N  IAR+L
Sbjct  123  DTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  194  TLSPLTVKTHVNHAMTKLGARDRAQLVVLAYQTGLAHPP  232
             +SP TVKTH+N+AMTKL ARDR+QLV +A+++GL + +
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

74) Franean1_6511 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (542),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 154/217 (71%), Gaps = 5/217 (2%)

Query  1    MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVL  60
            MI VV+ DDQ+++R GL+ ++E + ++ + GEA DG++A+A++R +RPDVVL+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAALRAITADPALTDTRVVMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVV  120
            DG++A  A+ ADP L   R++++TTF+ DE V+ ALR GA GF+ K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGESLLSPTITRRVIETFARRPAAPAAVDL----TSLTVREREVMGLVGLGLSNDEIAA  176
            A G++ LS+  ++ V+  + RR  +++ V+L    ++LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGL  213
             L ISPAT +TH++R M KL ARDR+QL  +A ++GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

75) ROP_66720 in NC_012522


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 154/217 (71%), Gaps = 4/217 (1%)

Query  3    IRVLVADDQALVRAGFAALLDAQPDITVAGQAENGEQAVSLTRTLIPDVVLMDIRMPVLD  62
            I V++ DDQA++RAG+ ++L+ +++I V G+A +G  A ++ R   PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRIATDPALSGVRVVVLTTFELDEYVFEAMRAGATGFLVKHTEPAELvravrvva  122
            G+ AT  + +DP L++VR++VLTTF+ DE V+ A+RAGA GFL K +++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDALLSPSVTRKLVAEFATHAKRPPHS---SRLDDLTDREREVMTLIAEGLTNAEIGSR  179
             GD+ LS++ ++ +V+++  +++ + +    +R   LT+RE +V+   A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LFLSPATARTHVSRILLKLGARDRTQLVVMAYEWGLV  216
            LF+SPAT +TH++R + KL ARDR QLV +A+  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

76) B446_13020 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 150/220 (69%), Gaps = 5/220 (2%)

Query  4    VRVLLADDQALVRAAFAMLVETAPDMVVVGQAATGREAVDLARSERADLVLMDIRMPGLD  63
            + V+L DDQA++RA++  ++E A ++ V+G+AA GR A  + R+ R+D+VLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRLIAADEDLAGVRVLVLTTYDTDEHIVDALRAGASGFLVKDTRPADLLDAIRVVA  123
            G+ AT  + AD DL +VR+LVLTT+D DE+++ ALRAGA GFL K + +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGEALLSPGPTARLIERFLRSPSAPPTAG----PECLSERERQVLTLVARGLNNTEIAEA  179
             G++ LS+G++  ++  + R   ++           L++RE +V+   ARGL+N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LGLSPLTAKTHVSRIMGKLGARDRAQLVVVGYESGLVTPG  219
            L +SP T KTH++R M KL ARDR+QLV +++ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

77) Sros_8793 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (541),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 154/222 (70%), Gaps = 6/222 (2%)

Query  1    MIRVLLADDQTLVRAGFRSILEGEDDIEVVGEAADGVRAVQLTRELGPDVVLMDIRMPEL  60
            MI V+L DDQ+++RAG+R+ILE + +I V+GEAADG  A  + R   PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGLEAARQIIADDGPAVTKVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHGIKVV  120
            +G+ A+  + AD +    ++++LTTFD D+ V +ALRAGA GFL K +++  LI ++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALIAPSVTRRLIAEFAGRVKRPEPGPEF----NGLTEREREVLTLVAGGLSNDEIA  176
            A+GD+ ++++ ++ +++++  R  R+  + E+      LT+RE +V+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  ARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVVTPG  218
              L +SPAT KTH++R MTKLHARDR QLV +A+ +G+V  +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

78) TIIST44_10020 in NC_017550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (541),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 159/221 (72%), Gaps = 9/221 (4%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVVKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNAEAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+A++ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGSTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI-RVGEP  215
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+ R  +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

79) SVEN_3441 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  147 bits (540),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 155/219 (71%), Gaps = 4/219 (1%)

Query  1    MIRVLLVDDQPLIRSGFRAFLDLEDDIEVVAEAANGQEGLALAREHLPDVALVDIQMPVL  60
            MI V+LVDDQ++IR+G+R++L+ + +I V++EAA+G+ ++A+ R   PDV L+D++MP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIETTRGIAADPALADVHVVILTNYGLDAYVFDALSAGAAGFLVKDIVPEDFLHAVRVA  120
            DG+ +T ++ ADP L  V++++LT ++ D  V+ AL AGA GFL K   +E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRKLINRYVTQPLPTDTGEVL---EGLTGREREAVVLVAHGLSNDEIAA  177
            A+GD+ L+++ ++ +++    +  ++   E++     LT RE + V+  A+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  HMVVSPLTAKTHVNRAMTKLRARDRAQLVILAYESGLVT  216
            ++ +SP T KTH+NRAMTKL+ARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

80) Ndas_3601 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 109/219 (50%), Positives = 159/219 (73%), Gaps = 3/219 (1%)

Query  1    MIRVLLADDQALVRAGFRALLDSAPDIevvaeaadgeaavrlaraERPDVVLMDIRMPGV  60
            MI V+L DDQA++RAG+R++L+ A +I V++EAADG +A  + R+ RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAAGRILADPALEATRVVILTTFDLDEYIFEALRAGASGFLVKDTEPGDLLRAVRVV  120
            DG++A++ + ADP L+A R+++LTTFD DE ++ ALRAGA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HGGEALLSPGITRRLIADYARRPPSAPDPSV--RLNGLTEREREVVALVGGGLSNEEIAA  178
              G++ LS+G ++ +++D  RR  SA D  +  R   LT+RE +VV   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVLSPATAKTHVSRAMVKLGVRDRAQLVVIAYETALVT  217
            +L +SPAT KTH++RAM KL  RDR+QLV IA+ ++LV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

81) BN159_6270 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (537),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 100/220 (46%), Positives = 158/220 (72%), Gaps = 4/220 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVALAKEQRADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A A+ +  R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLISADPSLAHVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPDELLNAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ +LRAGA GFL+K+++++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPAATKGLIARFLAQGGAGDEDRDPARAERLDALTVREREVLVQVAGGHSNDEI  182
             G++ LS++A+K +++ +  +G ++    D     R  +LT RE +V++  A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT---DVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  222
            A  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

82) PALO_06420 in NC_021064


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 154/215 (72%), Gaps = 8/215 (3%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEAANGSEGVDVVRETAPDIVLMDVQMPIMDGI  62
            VVLVDDQ ++R G+R IL  +++I V+GEAA+G  +  V+R + PD+VLMD++MPI+DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   EATAKIR---EFSDVKIVILTTFDRDDYLFDGLDAGASGFMLKNADAESLVAGLRQVADG  119
             ATA +R   +++ V+I++LTTFD D+ ++ +L AGA GF+ K+AD+ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGRTVTGRGV----EQLTAREIEVATLVARGLSNAEIAEELI  175
            ++ L++  ++ V++   ++GR+ T+  +      LT RE +V    ARGL N  IA +L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSEATVKTHVSNCLMKCDLRDRVQLVALAYESGLI  210
            +S ATVKTH++  + K + RDR QLV++A+ SGL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

83) SAV_5605 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (537),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 151/220 (69%), Gaps = 3/220 (1%)

Query  6    VRVLLADDQTLVRAAFAMLVESATDMEVVGQAGTGREAVRLARSERADVVVMDLRMPDLD  65
            + V+L DDQ+++RA++  ++E A ++ V+G+A+ GR A  + R+ R+DVV+MDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIDATRLIAADDDLAGVRVLVLTTYDTDEYIVEALRAGASGFLVKDTKPAELLDAIRTVA  125
            G++AT  + AD DL +VR+LVLTT+D DE ++ ALRAGA GFL K + +  L+ A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGEALLSPGPTARLIARLLRTpvpppaa--avgpECLSGREREVLTLVARGLNNTEIAES  183
             G++ LS+G++  +++ L R   ++           L+ RE +V+   ARGL+N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPG  223
            L +SP T KTH++R M KL ARDR+QLV +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

84) SBI_07179 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (537),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 101/226 (45%), Positives = 159/226 (71%), Gaps = 4/226 (1%)

Query  12   IRVLLADDQTLVRAAFAMLIESAPGMEVVGQAGTGREAVELARTARADLVVMDIRMPDLD  71
            I V+L DDQ+++RA++  ++E A G+ V+G+A+ GR A  + R +R+D+V+MD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  72   GIEATRRIAADDDLAGVRILVLTTYDTDDHIVEALRAGASGFLVKDTRPADLLDGIRTVA  131
            G+ AT  + AD DL +VRILVLTT+D D++++ ALRAGA GFL K + +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  132  AGESLLSPGPTARLIARMLRIpaapppaalaaaglgalSDRERQVLTLVARGLNNAEIAE  191
             G++ LS+G++  +++  LR  + ++      A  ++L++RE +V+   ARGL+N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  192  ALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYECGLVTPSRSEAP  237
             L +SP T KTH++R M KL+ARDR+QLV  A+  GLV  +R+E P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV--NRAEHP  223

85) TIA2EST22_04610 in NC_016512


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 159/221 (72%), Gaps = 9/221 (4%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVVKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNADAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+AD+ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGGTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI-RVGEP  215
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+ R  +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

86) TIA2EST36_04585 in NC_016511


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 159/221 (72%), Gaps = 9/221 (4%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVVKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNADAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+AD+ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGGTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI-RVGEP  215
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+ R  +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

87) TIB1ST10_04775 in NC_017535


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (537),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 159/221 (72%), Gaps = 9/221 (4%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVLKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNAEAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+A++ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGSTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI-RVGEP  215
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+ R  +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

88) PPA0926 in NC_006085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (537),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 159/221 (72%), Gaps = 9/221 (4%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVLKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNAEAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+A++ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGSTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI-RVGEP  215
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+ R  +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

89) Franean1_4684 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (539),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 105/220 (48%), Positives = 155/220 (71%), Gaps = 4/220 (1%)

Query  1    MIRVLLADDQALIRAGFRVLveaaaditvvaeaadgaeavrlarETRPDVILMDIRMPGT  60
            MI V+L DDQA+IRAG+R ++E A+   +   A + +    +   +RPDV+LMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIR-GSRPDVVLMDLRMPIL  59

Query  61   DGLSATRELTGDPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVV  120
            DG++AT  L +DP LN V++LVLTTF+ DE+V+ ALR GA GFL+K+ +++ L+AA+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLSPQATRHLIEQYLRQPATPAPAV--TAGLDLLTKRENEIVRLIAYGLTNDEIA  178
            A+GD+ LS+ A++ ++ + LR+ + +A  V   A    LT RE ++V   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  EQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAE  218
             +L++SP TVKTH NRAMTK+ ARDR+QLV IA+++GL +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

90) SVEN_1822 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 106/222 (48%), Positives = 164/222 (74%), Gaps = 6/222 (2%)

Query  3    IRVLLADDQALLRSAFKVLVNSEPDMEVVGEAADGAQAVALARSERADVVLMDIRMPGTD  62
            I V+L DDQA++R++++ +++ ++++ V+GEAADG  A A+ R+ R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMITADPELSDVRIVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLGAIRIAH  122
            G++AT  + ADP+L+ VRI++LTTF+ DE V+ +LRAGA GFL+K+A++E L++A+    
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPAATKGLIATFLAQGPgaeavgeagrarserLAALTAREREVLVLVAGGLSND  182
             G++ LS++A+K +++ +  +G +A  V   +R+     A+LT RE +V++  A GL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-----ATLTHRETDVVLGAARGLDNV  175

Query  183  EIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV  224
             IA  L +SP TVKTH+NRAM+KL ARDR+QLV  A+ SGLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

91) SCATT_12900 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 110/222 (50%), Positives = 164/222 (74%), Gaps = 2/222 (0%)

Query  3    VRVVLADDQALLRGAFRVLVESEADMAVVGEACDGAEAVELARRHRPEVVLMDIRMPGTD  62
            + VVL DDQA++R+++R ++E +A++ V+GEA DG  A  + R  RP+VVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRAITADPELSATHVLVLTTFEADEYVAEALRAGAAGFLGKGAEPAELLGAIRTVA  122
            G++AT A+ ADP+L+A ++LVLTTF++DE V  ALRAGA GFL+K+A++  L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDALLSPAATKSLIAQFVsgagapgpspaaaarlaaltarEREVVTEVAAGLSNEEIAE  182
             GD+ LS++A+K++++++    G ++      AR A+LT RE +VV   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLGVSPLTVKTHVNRALAKLGARDRAGLVVIAYESGLVRPGQ  224
             L +SP TVKTH+NRA++KL ARDR+ LV IA+ SGLV  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

92) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 110/222 (50%), Positives = 164/222 (74%), Gaps = 2/222 (0%)

Query  3    VRVVLADDQALLRGAFRVLVESEADMAVVGEACDGAEAVELARRHRPEVVLMDIRMPGTD  62
            + VVL DDQA++R+++R ++E +A++ V+GEA DG  A  + R  RP+VVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRAITADPELSATHVLVLTTFEADEYVAEALRAGAAGFLGKGAEPAELLGAIRTVA  122
            G++AT A+ ADP+L+A ++LVLTTF++DE V  ALRAGA GFL+K+A++  L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDALLSPAATKSLIAQFVsgagapgpspaaaarlaaltarEREVVTEVAAGLSNEEIAE  182
             GD+ LS++A+K++++++    G ++      AR A+LT RE +VV   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLGVSPLTVKTHVNRALAKLGARDRAGLVVIAYESGLVRPGQ  224
             L +SP TVKTH+NRA++KL ARDR+ LV IA+ SGLV  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

93) VAB18032_04660 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 155/223 (70%), Gaps = 4/223 (1%)

Query  1    MTSVLIVDDQDLVRAGIRTLLSADPQIDVVGEAADGRSGLRLARQYRPDVVLMDIRMPVL  60
            M  V++VDDQ ++RAG+R +L  D+ I V+GEAADGRS++ + R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATAAIRADAGLAATRVLILTTFDDDEDIIEAVSLGAAGYLLKDTPSDELRRAVLTT  120
            DG++ATAA+RAD++L A R+L+LTTFD+DE+++ A+  GA G+L K + S+ L  AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGGNLLSPTVTRRVMEr---laaaprparpdprlaVLTERERAVLARVGLGETNDEIGR  177
            A G+  LS+  ++ V+      + ++      +R A LT+RE  V+   + G  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ALFISPATARTYVSRLLAKLNARDRTALAVIAHRAGLSEPPDD  220
             LFISPAT +T ++R ++KL+ARDR  L  IA R+GL + +++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

94) L083_4067 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 154/217 (71%), Gaps = 7/217 (3%)

Query  1    MIRVVLADDESLVRMGLRVLIDREDDLAVAGEAASGPEALRVVRETRPDVLLLDVRMPGM  60
            MI VVL DD++++R GLR +++ + ++ V GEAA G  A+ V+R +RPDV+L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLATLRAITADPELAALRVVIVTTFEIDSYIFAALQAGAAGFVLKDTAPADLVRAIRVA  120
            DG+++  A+ ADP+L A+R++++TTF+ D  ++AAL+AGA GF+ K + +  L+ A+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEALLSPSVTRRVVSMFSQPGGAVTGID------TLTGREREIVAWVTTGHTNEQIAR  174
            A G++ LS++ ++ VVS + + G + T+++      TLT RE ++V   + G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ELRLSPATVRTHAGRAMVKLNARTRAQLVVIGVRAGL  211
            +L +SPATV+TH  RAM KL+AR R+QLV I+ R+GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

95) Sked_37860 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 99/221 (45%), Positives = 158/221 (72%), Gaps = 6/221 (2%)

Query  1    MTTVLVVDDQPLVRQAVRDILTDGGVDVVGEASTGHEavraaaalaPDVVLMDIRMPGLD  60
            M  V++VDDQ+++R ++R+IL D+G+ V+GEA+ G+ A     +  PDVVLMD+RMP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GIAATEQICAGPAGSTTRVLVLTTFEEDEYVVAALRAGASGFIGKGAEPDDIVRAVRTVH  120
            G++AT  + A+P  ++ R+LVLTTF+ DE V+AALRAGA GF++K+A+++ ++ AV +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  LGESLLSSAATRALVERYVHQQAPRADAWEGDGLGR---LTEREREVFLLVAAGRTNQDI  177
             G++ LS++A++++V     ++  R+ + + + ++R   LT+RE +V L  A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSAT-DVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  178  AAELVISTHTAKTHVNRIMTKVDVRDRAHLVILAYESGLVT  218
            A +L IS  T KTH+NR MTK++ RDR++LV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

96) Strvi_7533 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 153/223 (69%), Gaps = 3/223 (1%)

Query  3    IKVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRQGVEVSRRAHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEA+DGR +  V R ++PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAARQLLDPPRGVIHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRV  122
            G+ A+  L   P   ++  ++L+LTTFD D+ V  ALRAGA GFL K A +  LI+AV  
Sbjct  61   GVGATAALRADPD--LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGEALLAPSVTRRLIADFARQRPAPRRDGPSARRSGLTPRETEVLELIARGLSNQEIA  182
            VA G++ L+++ ++ +++D+ R+  ++      AR + LT RET+V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVTPGQ  225
              L ++  TVKTH+ R ++KL  RDR+Q V +A+ SGLV  ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

97) SFUL_1959 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (535),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 104/225 (47%), Positives = 155/225 (69%), Gaps = 6/225 (2%)

Query  3    IRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAADGRQGVDVSRNQHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEAADGR +  V R  +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAAREL-LNPPIGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVR  121
            G++A+  L  +P +  V   ++L+LTTFD D+ V  ALRAGA GFL K A +  LIAAV 
Sbjct  61   GVGATAALRADPDLNAV---RILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  122  VVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRLNALTPRESEVLELIARGLSNQE  181
             VA GD+ L+++ ++ +++D+  +R  +AT      R  +LT RE++V+   ARGL N  
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  182  IAERLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGD  226
            IA  L ++  TVKTH+ R ++KL+ RDR+Q V +A+ SGLV  ++
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

98) nfa4180 in NC_006361


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (534),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 154/217 (71%), Gaps = 5/217 (2%)

Query  3    IRVLVADDQALVRGGFVALLAAQEGIEVVGEADDGEQAVRLTRELRPDVVLMDIRMPVLD  62
            I V++ DDQA++R+G+ ++L  + GI V+GEA DG  A  + R  RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRTIAADPALTDVRVVVLTTFELDEYVFEAMRAGATGFLVKHTEPadlvravrvva  122
            G++AT ++ ADP L  VR++VLTTF+ DE V+ A+RAGA GFL K +++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdallSPGVTRRLITEFAAHAKQPPPAAL----AELTDREREVMALVAEGLTNAEIGAR  178
             GD+ LS+G ++ +++++  +++ +    L    A LT+RE +V+   A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYLSPATARTHVSRILTKLGARDRTQLVVLAYESGLV  215
            L++SPAT +TH++R +TKL ARDR QLV +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

99) SHJG_5948 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 154/218 (71%), Gaps = 2/218 (0%)

Query  1    MLVVDDQFLIRAGLVGLLDAAPGFEVVGEAGDGEQAVRLAAETRPDVVLMDIRMPGVNGI  60
            +++VDDQ +IRAGL G+L+ A G+ V+GEA+DG  A  +   +RPDVVLMD+RMP ++G+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATERILAEAADRPPRVLVLTTFDLDEYVYGALRAGASGFLLKDSGPERLLAAVTAVDGG  120
             AT  + A++   + R+LVLTTFD DE V +ALRAGA GFL K +++E L+AAV AV  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  DALFAPSVTRRLVESFARR-QEPVHTAPPPDLGVLTSREVEVLRLTARGLSNLEIADRLY  179
            D+ ++++ ++ +V  + RR + + +    +  + LT RE +V+  +ARGL N+ IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  ISEATVKTHLNRTMTKLDLGSRAQAVVLAYETGLVTPG  217
            IS ATVKTHLNR+MTKL+   R+Q V +A+ +GLV  +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

100) SHJGH_5710 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 154/218 (71%), Gaps = 2/218 (0%)

Query  1    MLVVDDQFLIRAGLVGLLDAAPGFEVVGEAGDGEQAVRLAAETRPDVVLMDIRMPGVNGI  60
            +++VDDQ +IRAGL G+L+ A G+ V+GEA+DG  A  +   +RPDVVLMD+RMP ++G+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATERILAEAADRPPRVLVLTTFDLDEYVYGALRAGASGFLLKDSGPERLLAAVTAVDGG  120
             AT  + A++   + R+LVLTTFD DE V +ALRAGA GFL K +++E L+AAV AV  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  DALFAPSVTRRLVESFARR-QEPVHTAPPPDLGVLTSREVEVLRLTARGLSNLEIADRLY  179
            D+ ++++ ++ +V  + RR + + +    +  + LT RE +V+  +ARGL N+ IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  ISEATVKTHLNRTMTKLDLGSRAQAVVLAYETGLVTPG  217
            IS ATVKTHLNR+MTKL+   R+Q V +A+ +GLV  +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

101) ML5_1327 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (533),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 159/221 (72%), Gaps = 6/221 (2%)

Query  4    IRVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSGLSVVREQRPDIVLMDVRMPGGD  63
            I VVLVDDQ ++R+GLR++L+  ++I V+GEA+DG S+++V+R  RPD+VLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLEATRRILTDPMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA  123
            G+ AT  + +DP L++V++++LTTFD+DE ++ A+RAGA GFL K + +++L  AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  GGDALLSPavtrrvlaa-----aarSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQA  178
             GD+ LS++ ++ V++       + + V   +R A LT RE DV+   + G  N  I++ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLVRPGE  219
            LF+SP T +T ++R + KL+ARDR+QLV IA+ SGLV  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

102) MODMU_2541 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (533),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 156/219 (72%), Gaps = 6/219 (2%)

Query  3    VRVAVVDDQALVRGAFAMVLNHQPDIEVVAEAGTGVEAIEVTRRHRPDVVLMDIRMPEMD  62
            + V +VDDQA++R+++  +L+ +++I V++EA+ G  A+ V R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAT--VRIVAELGDAVRVLILTTFEPDEYVYRALRAGASGFVLKDLPPEQLVVAVRTV  120
            G+ AT  +R  ++L +AVR+L+LTTF+ DE V  ALRAGA GF+ K   +E L+ AV +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ADGGALLAPSITRRLIG--RFAEQRAPDTALAGRLERLTARERDVVTAVARGRSNAEIAR  178
            A G++ L+++ ++ +++  R   + A D  L +R   LT RE DVV + ARG  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELYIGAATVKSHVSSVLTKLGLRDRAQVVVFAYEAGLVE  217
            +L+I++ATVK+H++  +TKL  RDR+Q+V +A+ +GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

103) CVAR_0285 in NC_015859


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (534),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 98/223 (44%), Positives = 163/223 (74%), Gaps = 11/223 (4%)

Query  1    MVDDQALIRQAVADIISTHPDIEVVATAGDGEDAVDRVASLHPDVVLMDVRMPVLDGIGA  60
            +VDDQA+IR ++ +I+  +++I V++ A+DG  A   + + +PDVVLMD+RMP+LDG+GA
Sbjct  6    LVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGA  64

Query  61   TGQICADPANASTRVLILTTFEEDEYVVSALRAGAGGFIGKGAEPEDIVRAVQAVHAGDS  120
            T+ + ADP   + R+L+LTTF+ DE V++ALRAGA+GF++K+A++E ++ AV+AV  GD+
Sbjct  65   TAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDT  124

Query  121  LFSPAATRSLITRYIDVPDatgqggassggtVSEDAAKDLARLTGREQEVLLLVGQGLSN  180
             +S++A++++      V+D   +G ++++  +   +A     LT RE +V+L  ++GL N
Sbjct  125  SLSAGAAKTV------VSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDN  174

Query  181  QEIAEKFFISPHTAKTHVNRIMSKINAHDRAQLVILAYESGLL  223
              IA  +FISP T KTH+NR M+K++A+DR+QLV +A+ SGL+
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

104) PAGK_1226 in NC_021085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 94/215 (44%), Positives = 156/215 (73%), Gaps = 8/215 (3%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVVKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNADAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+AD+ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGGTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI  210
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

105) HMPREF0675_3985 in NC_014039


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 94/215 (44%), Positives = 156/215 (73%), Gaps = 8/215 (3%)

Query  3    VVLVDDQKLVRQGFRLILAVEPDITVVGEATNGAEGVDVVKETAPDVVLMDVQMPVMDGV  62
            VVLVDDQ ++R G+R IL  +++I V+GEA++G  +  V++ + PDVVLMD++MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATAKIR---EFSDVKVVILTTFDRDDYLFDALDAGASGFMLKNADAESLVAGLRQVADG  119
            +ATA +R   +++ V++++LTTFD D+ ++ AL AGA GF+ K+AD+ESL+A++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  HALLAPEVTRRVIARSVHQGGTVTG----SKAEQLTAREIEVAKLVARGLSNAEIAEELV  175
            ++ L++  ++ V++   ++G + T+    +++  LT RE +V    ARGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  VSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI  210
            +S+ATVKTH++  + K + RDR QLV++A+ SGL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

106) B446_05485 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (532),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 160/218 (74%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFGALLDAQPDIevageaadgeeavRLVREQRPDVVLMDIRMPRL  60
            MI V+L DDQ+++RAG+ ++L+ +++I V GEAADG  A  ++R  RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITGDAGLGDVRVVMLTTFELDEYVFEAIRAGASGFLVKDTEPDELLRAVRAV  120
            DG++AT  + +D++L  VR+++LTTF+ DE V+ A+RAGA GFL K ++++ L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VAGDALLSPGVTRRLIAEFAARSKEPAAADAL---ALLTEREREVMALVGIGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ ++  + +   A LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

107) Xcel_1618 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (532),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 158/219 (73%), Gaps = 6/219 (2%)

Query  1    MIRVLVVDDQTLIRSAVVGLLgaaddvevvaeagdgRRAVELARRHRPDVVLMDIRMPVM  60
            MI V++VDDQ++IR+++ G+L  A+   +   A++ R A  + R  RPDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADG-RSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIDATRTICADRGLEAVRVLVLTTFEEDAFIVGALRAGASGFLGKGSEPGEIIAAIRAV  120
            DG++AT ++ AD +L+AVR+LVLTTF+ D  +++ALRAGA GFL+K++++  +IAA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HGGEALLSPTATRALIDRYVRPSPS----DVVPQALEHLTEREVEILTLVGSGLSNAEIA  176
              G++ LS+ A+++++    R + S    ++++++   LT+RE +++   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIA  178

Query  177  DRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGLV  215
              L ISP T KTH+NR MTKLHA+DR+QLV  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

108) all4635 in NC_003272


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  145 bits (532),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 92/207 (45%), Positives = 141/207 (69%), Gaps = 5/207 (2%)

Query  1    MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIM  60
            MI V+LVDDQ +IR GLR++LE +++I ++GEA +G+ A+ +I   +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATQEI--QQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  +  + ++  V++LVLTTFD+DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  EKGYTQLGPGIVKKLLVQFQSTPNHTPPAP--THLADLTPREKEVLRLIAAGANNREIAQ  176
             KG T L++G  K ++ +++     +      ++ A LT RE +V+   A G +N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  QLYISEGTVKNHVTNILNRLNLRDRTQ  203
            +L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

109) AMIS_17040 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (531),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 106/219 (49%), Positives = 160/219 (74%), Gaps = 3/219 (1%)

Query  1    MISVVLADDQALVRAGFRALLDAEPDIAVVGEAADGVQAVELVRSKRPDVVLMDIRMPGV  60
            MI VVL DDQA++RAG+R++L+ +++I V+GEAADG  A  ++R+ RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIAADAELAGTRVVILTTFELDEYVFEALRTGASGFLVKDTEPvellravrvv  120
            DG+ AT  + AD++L + R+++LTTF+ DE V+ ALR+GA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aageallSPSVTRRVIGGFMAGTGRGPTP-EPSSQLEQLTEREKEVMVLVAEGLTNDEIA  179
            A G++ LS++ ++ V++++    GR++T  E  ++   LT+RE +V++  A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  180  GRLMISPATAKTHVSRTMIKLGARDRVQLVVLAYEFGLI  218
              L ISPAT KTH++R+M KL ARDR QLV +A+  GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

110) L083_2306 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (531),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 101/225 (45%), Positives = 162/225 (72%), Gaps = 11/225 (4%)

Query  1    MIKVLLADDQALVRAGFRALIDAEPDLEVVAEAGDG---LEAVRAAVRTLPDVVLMDIRM  57
            MI V+L DDQA++RAG+R++++ ++++ V++EA+DG   +  +R++    PDVVLMD+RM
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSR---PDVVLMDLRM  56

Query  58   PGVDGLEATRRIAADATLAGTRVVILTTFELDEYVFEALRTGASGFLVKDTEPVDLLRGI  117
            P +DG+ AT  + AD+ L + R+++LTTF+ DE V+ ALR+GA GFL K +++  L+ ++
Sbjct  57   PILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  118  RAVAAGDALLSPSVTRRVIGEFATPGARGRSATPPAGIEQRLGQLTDREREVMVLVGEGL  177
             AVA GD+ LS++ ++ V++++     RGRSAT    +  R + LT+RE +V++  + GL
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRR---RGRSAT-DVELIARTATLTHRETDVVLGAARGL  172

Query  178  SNDEIAARLVISPATAKTHVSRTMLKLGARDRAQLVVLAYEAGLI  222
             N  IA  L ISPAT KTH++R+M KL ARDR+QLV +A+ +GL+
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

111) MTES_0987 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (531),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 95/217 (44%), Positives = 156/217 (72%), Gaps = 6/217 (2%)

Query  5    VRIVLVDDQALFRAGIRMVIDSQPDLEVVGEASDGREGIEMVRATRPDLVLMDVRMPVMD  64
            + +VLVDDQA++RAG+R +++ ++++ V+GEA+DGR ++ ++R++RPD+VLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLTATAEILREPE--APRVVVLTTFDLDEAAARAIQRGASGFLLKDSEPEFLLSAIRTVH  122
            G+ ATA +  +P+  A R++VLTTFD DE    A++ GA GFL K +++E L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGSAVIAAEATRELFAHIAENGSAEP---VPASFGELTEREREIFLLAAAGLSNSEIAAR  179
             G + ++A A++ + +++   G +     + A  + LT+RE ++ L AA GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  EFLSEATVKTHISRILAKLSLRDRVQLVVFAYRHGLV  216
             F+S ATVKTH++R ++KL  RDR QLV +A+R GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

112) SBI_08844 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (530),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 111/218 (51%), Positives = 154/218 (71%), Gaps = 8/218 (3%)

Query  3    ISVLLVDDEQLVRAGLRAILESQPDIRVIGEAADGASVVPLVRQLRPDVVAMDVRMPLLD  62
            I V+LVDD+ ++RAGLR+ILE +++IRVIGEAADG S  +++R  RPDVV MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLRAVPD--PPRILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLA  120
            G+ AT A LRA PD  + RILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV   
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPAAVRSFAAA---RGGNKRAREAMDRAA-LTEREAEVLRLMARGLTNAEIAG  176
            A G++ L ++A ++  +    RG +    E + R+A LT+RE++V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  HLVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGFV  214
            +L I++ TVKTH++  ++KL ARDR Q V  A+ SG+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

113) SCATT_07960 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (531),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 158/218 (73%), Gaps = 4/218 (1%)

Query  1    MSRVVLADDQVLVRAGFRALLDAQSDIevvgeaadgaeaLRQVARLRPDVVLMDIRMPVL  60
            M  VVL DDQ ++RAG+R++L+ +++I V+GEAADG  A+  +   RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITDDPSLDGVKVVILTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAA  120
            DG++AT  +  DP L++V++++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VAGDALLSPGVTRRLIAEFAARSKEPMAAAGLAQ---LTEREREVMALVGMGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ +     +A+   LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRAMVKLGARDRAQLVVMAYESGLV  215
             L +SP T KTH++RAM KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

114) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (531),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 158/218 (73%), Gaps = 4/218 (1%)

Query  1    MSRVVLADDQVLVRAGFRALLDAQSDIevvgeaadgaeaLRQVARLRPDVVLMDIRMPVL  60
            M  VVL DDQ ++RAG+R++L+ +++I V+GEAADG  A+  +   RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITDDPSLDGVKVVILTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAA  120
            DG++AT  +  DP L++V++++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VAGDALLSPGVTRRLIAEFAARSKEPMAAAGLAQ---LTEREREVMALVGMGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ +     +A+   LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRAMVKLGARDRAQLVVMAYESGLV  215
             L +SP T KTH++RAM KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

115) SGR_5344 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (529),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 106/221 (48%), Positives = 163/221 (74%), Gaps = 5/221 (2%)

Query  19   IKVLLADDQALLRSAFRVLVDSEPDMVVVGEAADGAQAVDMARASGADVVLMDIRMPGTD  78
            I V+L DDQA++R+++R +++ ++++ V+GEAADG  A  + R+S +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  79   GLAATRMISADPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLNAIRIaa  138
            G++AT  + ADP+L+AVR+++LTTF+ DE V+ +LRAGA GFL+K+A+++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  139  ageallspaaTKGLIATFLAQGGSSGEGPDSAEYAERLAALTGREREVLVQVAGGHSNDR  198
             G++ LS++A+K +++ +  +G S+ +     E   R A+LT RE +V++  A G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATD----VELIARTATLTHRETDVVLGAARGLDNVS  176

Query  199  IAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  239
            IA  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

116) O3I_002360 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (529),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 101/217 (47%), Positives = 155/217 (72%), Gaps = 5/217 (2%)

Query  3    IRVLVADDQALVRGGFVALLAAQDGIEVVGEADNGEQAVRMTRSLTPDVVLMDIRMPILD  62
            I V++ DDQA++R+G+ ++L  + GI V+GEA +G  A  + R+  PDVVLMD+RMPILD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMIAEDPQLAAVRVVVLTTFELDEYVFEAMRAGATGFLVKHTEPadlvravrvva  122
            G++AT  +  DP+L AVR++VLTTF+ DE V+ A+RAGA GFL K +++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdallSPGVTRRLIAEFSAHAKTPPPATL----SELTEREREVMVLVAEGLTNAEIGAR  178
             GD+ LS+G ++ +++++  +++++    L    + LT+RE +V++  A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFMSPATARTHVSRILMKLGARDRTQLVVMAYESGLV  215
            LF+SPAT +TH++R + KL ARDR QLV +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

117) BN6_84180 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (530),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 101/222 (46%), Positives = 154/222 (70%), Gaps = 6/222 (2%)

Query  1    MIRVLLVDDQELMRMGFRMVLGAQEDIDVVGEAGDGLDAVHLAASLRPDVVLMDVRMPVL  60
            MI V+LVDDQ ++R G+R +L  + +I V+GEA+DG  A  +  + RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEAT---KRIAEAGTAKVLVMTTFDMDEYALSALRNGASGFLLKDTPPGDLVSALRAV  117
            DGV AT   +  ++  + ++LV+TTFD DE  L+ALR GA GFL K + +  L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTKRLLS--RFLGESGGELRDASVLEALTEREREVLVLIAKGLSNTEIAR  175
            A GD+ +S++ +K ++S  R  G S+ ++   +   +LT+RE +V++  A+GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  KLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGLVRPGD  217
             LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

118) AMIS_30430 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (528),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 102/220 (47%), Positives = 157/220 (72%), Gaps = 2/220 (0%)

Query  5    VLLADDQALLRATFRLLLDAEPDIAVVGEAATGAQAVALARETRADLVLMDIRMPDMDGI  64
            V+L DDQA++RA +R +L+ +++I V+GEAA G  A A+ R +R+D+VLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRLISSDEDLAGVRVLILTTFETDELVVAALRAGASGFLGKGVDPAVLLHAVRTVAAG  124
             AT  + +D DL +VR+L+LTTF+ DE V+AALRAGA GFL+K+ D+  L+ AV +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ESLLSPNATTALIGRFLAQ-PDPAQVTVAAALGELTVREREITAMVGAGLSNPEIADRLG  183
            ++ LS+ A+ ++++ +  +   +++V + A  + LT RE ++    + GL N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  184  ISVATAKTHVNRAMMKTGARDRAQLVVFAYENGLVRVGDR  223
            IS AT KTH+NRAM K  ARDR+QLV +A+ +GLV  +++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

119) AORI_2982 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (528),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 102/226 (46%), Positives = 161/226 (72%), Gaps = 14/226 (6%)

Query  1    MIRVLLVDDQPLIRSGFRALLDVEDDIEVVAEAADGGEG-VLLAGKHLPDIALIDIQMPG  59
            MI V+LVDDQ++IR+G+R++L+ + +I V++EAADG  +  ++ G + PD+ L+D++MP 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSR-PDVVLMDLRMPI  58

Query  60   VDGIEATRRIAADPTLSGVHVVILTNYGLDEYVFNALRAGAAGFLVKDIEPEDFLHAVRV  119
            +DG+ AT  + ADP L++V++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV  
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  AARGDALLAPSITRKLID------RYVT-VPLGGGSGTGLPELTNREREAVVLVARGLSN  172
             A+GD+ L+++ ++ ++       R  T V L + ++T    LT+RE + V+  ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDN  174

Query  173  DEIAGHMVISPSTAKTHVNRAMTKLHARDRAQLVVLAYESGLVAPG  218
              IA ++ ISP+T KTH+NRAMTKLHARDR+QLV +A+ SGLV  +
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

120) Psed_2860 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (528),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 152/218 (70%), Gaps = 9/218 (4%)

Query  9    IGVLLVDDEELVRTGLRAILDSEPGIRVLGEAADGAEVPGLVARLRPAVVLMDVRMPTVD  68
            I+V+LVDD+ ++R+GLR+IL+ ++GIRV+GEAADG    +++   RP VVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GITATRALLARPD--PPRVLVLTTFGNDGHVYEALRAGATGFLLKRARPADIVSAVRTVA  126
            G+ AT AL A PD  + R+LVLTTF+ D +V  ALRAGA GFL K A +  +++AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  SGESLLFPAAVRELVAAV---GPDTGD-RLAGRG--LTDRESEVLRGMARGLSNAEIAAE  180
             G++ L ++A + +V+ +   G  + D  L +R   LT+RE++V+ G ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFVD  218
            L ++  TVKTH+   ++KL  RDR Q V  AF SG+V+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

121) SVEN_2193 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  144 bits (528),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 101/225 (45%), Positives = 153/225 (68%), Gaps = 9/225 (4%)

Query  3    IRVIIVDDQAMVRAGFAALLAAQPDIDVVGEAPDGRQGVDVARAAHPDVVLMDVRMPELD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEA+DGR +  V R+++PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAAREL-LHPPVGVTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVR  121
            G++A+  L  +P +      ++L+LTTFD D+ V  ALRAGA GFL K A +  LI+AV 
Sbjct  61   GVGATAALRADPDLNAV---RILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  122  VVAAGEALLAPSVTRRLIADFAASRPAPRKDTTAL--RLNGLTPRETEVLELIARGLSNQ  179
             VA G++ L+++ ++ +++D+   R +       L  R   LT RET+V+   ARGL N 
Sbjct  118  AVAKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  180  EIADHLVLAEQTVKTHIGRVLAKLDLRDRAQAVVFAYESGLVTPG  224
             IA +L ++  TVKTH+ R ++KL+ RDR+Q V +A+ SGLV  +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

122) SBI_00614 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (525),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/216 (50%), Positives = 160/216 (75%), Gaps = 2/216 (0%)

Query  1    MLLADDQALLRGAFRMLLDSADDITVVGEAADGREAVRLTRELRPDVVIMDIRMPEVDGL  60
            ++L DDQA++R+++R +L+ A+ I V+GEAADGR A  + R  RPDVV+MD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   TATSEICADPELRASRILILTTYETDEYVAQALRagaggfigkgigaEDLLDAVRTIADG  120
             AT+ + ADP+L A RIL+LTT++ DE V  ALRAGA+GF++K+ ++E L+ AV ++A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  DTLLSPAATRSLVARF-LATPDDTPSHHPEQLAVLTPREREMVALVATGLSNQEIAERMF  179
            DT LS++A++++V+ +       T  +   + A LT RE ++V   A GL N  IA  +F
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGLAH  215
            +SP TV++H++RAMTKL+ARDR+QLV IA+R+GL +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

123) SCAB_66041 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (525),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 157/217 (73%), Gaps = 1/217 (0%)

Query  3    IRVLLADDQALLRATFRILVDSCPDMEVVAEAADGREAVDLVRVHRPDVVLMDIRMPGTD  62
            I V+L DDQA++RA +R +++  +++ V++EAADGR A  ++R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLTATSVICADEELADTRVLILTTFEIDEYVAQALRSGASGFLGKDVTADLLLDGIRTVA  122
            G+ AT+ + AD +L   R+L+LTTF+ DE V  ALR+GA GFL+K   ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDTLLSPAATRTLITRFLAAPAPGsrlttperlttltsrereVMSLAAEGSSNDEIAEK  182
             GDT LS++A++T+++ +     +++ +    R +TLT RE +V+  AA G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGLV  219
            L++SP TV+TH++RAMTKL ARDR+QLV +A++SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

124) Strvi_6772 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (527),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 107/212 (51%), Positives = 160/212 (76%), Gaps = 2/212 (0%)

Query  5    VLLADDQALLRGAFRLLLDSADDITVVGEAADGREAVRLTRQLRPDVVLMDIRMPEVDGL  64
            V+L DDQA++R+++R +L+ A+ I V+GEAADGR A  + R  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATTEICADPELRASRILILTTYETDEYVAQALRagaggfigkgigaEDLLAAVRTIADG  124
            +AT+ + ADP+L A RIL+LTT++ DE V  ALRAGA+GF++K+ ++E L+AAV ++A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  DTLLSPAATRSLVARFLATPADAPPRH-AERLSVLTPREREMVALVATGLSNQEIAEQMF  183
            DT LS++A++++V+ +      A   +   R + LT RE ++V   A GL N  IA ++F
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  184  LSPFTVRAHVQRAMTKLEARDRAQLVVIAYRT  215
            +SP TV++H++RAMTKL+ARDR+QLV IA+R+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

125) SGR_5123 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (527),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 104/225 (47%), Positives = 154/225 (69%), Gaps = 6/225 (2%)

Query  3    IRVIIVDDQAMVRAGFAALLSAQSDIDVVGEAADGRQGVDVSRNQHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+GEAADGR +  V R  +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAAREL-LNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVR  121
            G++A+  L  +P +  V   ++L+LTTFD D+ V  ALRAGA GFL K A +  LIAAV 
Sbjct  61   GVGATAALRADPDLNAV---RILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  122  VVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRRHGLTPRESEVLELIARGLSNQE  181
             VA GD+ L+++ ++ +++D+  +R  +AT      R   LT RE++V+   ARGL N  
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  182  IAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGD  226
            IA  L ++  TVKTH+ R ++KL+ RDR+Q V +A+ SGLV  ++
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

126) Micau_1079 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (526),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 159/221 (72%), Gaps = 6/221 (2%)

Query  4    IRVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSALSVVREQRPDIVLMDVRMPGGD  63
            I VVLVDDQ ++R+GLR++L+  ++I V+GEA+DG SA++V+R  RPD+VLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLEATRRILTDSMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA  123
            G+ AT  + +D+ L++V++++LTTFD+DE ++ A+RAGA GFL K + +++L  AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  GGDALLSPavtrrvlaa-----aarSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQA  178
             GD+ LS++ ++ V++       + + V   +R A LT RE DV+   + G  N  I++ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLVRPGE  219
            LF+SP T +T ++R + KL+ARDR+QLV IA+ SGLV  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

127) Ava_2028 in NC_007413


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  143 bits (526),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 92/207 (45%), Positives = 140/207 (68%), Gaps = 5/207 (2%)

Query  1    MIKVLLVDDQNLIRQGLRALLELESDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIM  60
            MI V+LVDDQ +IR GLR++LE +++I ++GEA +G+ A+ +I   +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATQEI--QRNFPSVKVLVLTTFDDDEYVKAALQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  +  + ++ +V++LVLTTFD+DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  EKGYTQLGPGIVKKLLVQFQSTPNHTPPAP--TNLADLTPREKEVLRLIAAGANNKEIAQ  176
             KG T L++G  K ++ +++     +      +  A LT RE +V+   A G +N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  QLYISEGTVKNHVTNILNRLSLRDRTQ  203
            +L+IS +TVK H+   + +L  RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

128) yxjL in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (524),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 106/217 (49%), Positives = 156/217 (72%), Gaps = 3/217 (1%)

Query  1    MIRVAVVDDQPLVRMGLRALLETEEDTELVGEAADGRAGLALVRATLPDVVLMDVRMPEL  60
            MI V +VDDQ+++R GLR++LE + +  ++GEAADGR+++A++R++ PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEALRLIAADPALAGVRVIVLTTFELDEYVFAALTAGASGFVLKDGEPAELLRAVRVV  120
            DG+ A   + ADP L +VR++VLTTF+ DE V+AAL AGA GF+ K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGGSLLSPTVTRRVIEHF--aagparrtapragvaDLTEREREVVAWVATGRSNDEIAA  178
            A G++ LS+  ++ V+ ++   + +A      A  A LT+RE +VV   A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ALVVSPATVRTHVSRAMLKLRARDRAQLVVFAIESGL  215
             L +SPATV+TH++RAM KL+ARDR+QLV +A+ SGL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

129) RER_36800 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 152/219 (70%), Gaps = 7/219 (3%)

Query  3    IRVVVADDQALFRQTL-ALLIGSEDDMEVVAEAADGEQAFQAALEHRPDVVLMDIRMPGT  61
            I VV+ DDQA++R  L ++L   + ++ V++EAADG  AF      RPDVVLMD+RMP  
Sbjct  2    IDVVLVDDQAMIRAGLRGIL--EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   SGVEATAMIADHPDLSDVHVLILTTFEVDEHVAQAIRAGASGFIGKGIRAEDLLDAVRTV  121
             GV ATA +  +PDL+ V++L+LTTF+ DE+V  A+RAGA GF++K+  +E L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AGGNSLLSPIATSALISRFLSTPSRADSTSGIFGQ---LTPRELEVVTLVALGMSNDEIA  178
            A G++ LS+ A+ +++S  L   +R+ +   ++++   LT RE +VV   A G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGVV  217
             +L IS+ T KTH+NRAMTKL+ RDR+QLV +A++ G+V
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

130) Sros_2533 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 149/219 (69%), Gaps = 11/219 (5%)

Query  3    IRIVIADDQAMVRVGLKLVVESEPGMEVVGEAADGLEAVTVARRTRPDIVLMDISMPRMD  62
            I +V+ DDQAM+R GL+ ++E ++G+ V+GEAADG  A +V R +RPD+VLMD+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLTAARKLLDWPDPP----KVVMLTTFDTDENLYAALRAGTSGFLLKVSPPEQLVEAIRV  118
            G+ A+  L  ++DP     ++++LTTFD DE++ AALRAG+ GFL K + +E L+ A+  
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  VVGGDALLDPAVTTRVIASFAGRHDPAPPPQL----ADLTPRELEVLRFLARGLTNAEIA  174
            V  GD+ L ++ +  V++ +  R  +A   +L    A LT RE +V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  GQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESGVV  213
             +LF++ ATVKTH+ R + KLH RDR+Q V +A+ SG+V
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

131) NOCYR_0427 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 154/217 (71%), Gaps = 5/217 (2%)

Query  3    IRVLVADDQALVRGGFVALLDAQDGIEVVGEADNGEQAVRMTRALAPDVVLMDIRMPILD  62
            I V++ DDQA++R+G+ ++L+ + GI V+GEA +G  A  + R+  PDVVLMD+RMPILD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMIADDPKLAEVKVVVLTTFELDEYVFEAMRSGATGFLVKHTEPadlvravrvva  122
            G++AT  +  DP L  V+++VLTTF+ DE V+ A+R+GA GFL K +++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdallSPGVTRRLIAEFSEHAKQPPPATF----SELTDREREVLTLVAEGLTNAEIGER  178
             GD+ LS+G ++ +++++  +++ +    +    + LT+RE +V+   A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYMSPATARTHVSRILTKLNARDRTQLVVLAYESGLV  215
            L++SPAT +TH++R +TKL+ARDR QLV +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

132) SACE_1706 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 148/222 (67%), Gaps = 5/222 (2%)

Query  3    IKVLVVDDQAMVRAGFAALLAAQPDMEVVGEADDGERGVALSHEHGPDVVLMDVRMPVLN  62
            I V++VDDQAM+RAG+ ++L  ++++ V+GEA DG  + A+ +   PDVVLMD+RMP+L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLLDPPAHITHVPRVLMLTTFDIDDYVYEALRAGASGFLLKDALPADLIAGVRV  122
            G+ AT  L   P    +  R+L+LTTFD D+ V  ALRAGA GFL K A +  LIA+V  
Sbjct  61   GVGATAALRADPD--LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAGGQALLAPTVTRRLIEHFSRTAAPPITNP--PRLDVLTDREREVLVHVARGLSNTEIA  180
            VA G++ L++  ++ ++ ++ R + ++      +R   LT+RE +V++  ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  181  DALFIAEQTVKSHVSRILGKLGVRDRVQAVVVAYETGLVSSG  222
              LFI+  TVK+H++R + KL  RDR Q V +A+ +GLV+ +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

133) AMIS_63410 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (524),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 149/220 (68%), Gaps = 14/220 (6%)

Query  1    MIGLLIVDDHPVVRDGLRGMFAADDRFTVLGEAGNGREALTVARAVNPDVVLLDLRMPVM  60
            MI++++VDD++++R GLRG++   + + V+GEA++GR A++V R+  PDVVL+DLRMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTTIRELKASG--SAARVLVLTTYDTDSDVLPAIKAGATGYLLKDTPREELFRAVLSA  118
            DGV +   L+A    +A R+LVLTT+D D +VL+A++AGA G+L K +  E L+ AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HRGESVLSPAVAGRLMGELRSPAKEP-----------LSQRELEVLTLIARGCTNRETAG  167
             +G++ LS++ A  ++++LR  ++ +           L++RE +V+   ARG  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  RLFISEATVKTHLLHAYAKLGVRDRASAVATAFERGLLGR  207
             LFIS ATVKTHL +A +KL  RDR+  V+ AF  GL+ R
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

134) O5Y_16925 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (522),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 151/219 (69%), Gaps = 7/219 (3%)

Query  3    IRVVVADDQALFRQTL-ALLIGSEDDMEVVAEAADGEQAFQAALEHRPDVVLMDIRMPGT  61
            I VV+ DDQA++R  L ++L   + ++ V++EAADG  AF      RPDVVLMD+RMP  
Sbjct  2    IDVVLVDDQAMIRAGLRGIL--EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   SGVEATAMIADHPDLTDVHVLILTTFEVDEHVAQAIRAGASGFIGKGIRAEDLLDAVRTV  121
             GV ATA +  +PDL  V++L+LTTF+ DE+V  A+RAGA GF++K+  +E L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AGGNSLLSPIATSALISRFLSTPSRADSTSGIFGQ---LTPRELEVVTLVALGMSNDEIA  178
            A G++ LS+ A+ +++S  L   +R+ +   ++++   LT RE +VV   A G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGVV  217
             +L IS+ T KTH+NRAMTKL+ RDR+QLV +A++ G+V
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

135) SCH63.03c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (522),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 154/221 (70%), Gaps = 4/221 (1%)

Query  5    VIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGL  64
            V++VDDQAM+RAG+ ++L  +++I V+GEA+DG  +  + R ++PDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EAARRLLSPPPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVA  124
             A+  L + P    +  R+L+LTTFD D+ V  ALRAGA GFL K A +  LIAAV  VA
Sbjct  63   GATAALRADPD--LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGDALLAPSVTRRLIADFAQQ-RPASRGKPALRLKGLTERETEVLTLVARGQSNTEIART  183
             GD+ L+++ ++ +++D+ ++ R+A+      R   LT+RET+V+   ARG  N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE  224
            L ++  TVKTH++R +TKL+ RDR+Q V +A+ SGLV  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

136) Strvi_5814 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (521),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 155/218 (72%), Gaps = 4/218 (1%)

Query  10   VIRVALADDQILVRAGFRALLAAQPDIEVVGEAADGEQALALVREQHPDVVLMDIRMPVL  69
            +I V L DDQ ++RAG+R++L  +++I V+GEAADG  A+A++R  +PDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  70   DGLAATRRITGDPALGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAV  129
            DG++AT  + +DP L  V++++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  130  VGGDALLSPGVTRRLIaefaarsrepapaaalaelterereVMALV---GMGLSNQEIAR  186
              GD+ LS+G ++ +++++  R+R ++    +A  +   +    +V   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  187  RLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV  224
             L +SP T KTH++R+M KL  RDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

137) AMIS_23380 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (522),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 98/218 (45%), Positives = 154/218 (71%), Gaps = 5/218 (2%)

Query  1    MIRVVLVDDQHLVRAGFRMVLDYQDDMTVVGEAGDGAEALRLLRTTEADVVVMDLRMPVL  60
            MI VVLVDDQ ++RAG+R +L+ + ++ V+GEA+DG  A+ ++R + +DVV+MDLRMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATGRICEAG--PTLRVLVLTTFDTDEEAFASLRAGASGFLLKSSPPDDLLNAIRVV  118
            DG++AT+ +       ++R+LVLTTFD DEE +A+LRAGA GFL KS+ ++ L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGDAVVAPRVTRKLLD--RFAGRLVAGGPDASAPPDLTDREREVLLLVAQGLSNLEIGS  176
            A GD+ +++  ++ ++   R  GR  ++    +  + LT+RE +V+L  A+GL N+ I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLQVAEATVKTHVGRILAKLGLRDRVQAVVFAYESGLV  214
             L ++ ATVKTH+ R ++KL  RDR Q V +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

138) Asphe3_30180 in NC_015145


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  142 bits (521),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 154/221 (70%), Gaps = 7/221 (3%)

Query  20   VRVVLADDERLVRAGLSLLLAAEPDLEVVGEAANGAECLAVAGTTRPDVVVMDIRMPVMD  79
            + VVL DD+ ++RAGL  +L  ++++ V+GEAA+G   +AV   +RPDVV+MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  80   GIEATTRLTAD-GLGGGDGVPAVLILTTFSEDHNVTTAMRAGAAGFLLKNSAPQTLATAI  138
            G+ AT+ L AD +L +      +L+LTTF  D++V +A+RAGA GFL K++ +++L +A+
Sbjct  61   GVGATAALRADPDLNA----VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  139  RALAKGDGWLDPAITRSLLRHFSSRAADGQSVP-TADISVLTAREREVLGAMAVGLKNAE  197
             A+AKGD  L ++ +++++ ++  R+  +  V   A  + LT RE +V+ + A GL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  198  IANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSGLI  238
            IA  LF+S +TVKTH++R + KL   DR+Q V++A+RSGL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

139) Franean1_7161 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 157/222 (71%), Gaps = 4/222 (1%)

Query  3    IRVLIVDDQALVRGGLAMVLRVHGDIEVVAEAGTGLEAIEAARQHRPDVILMDIRMPAMD  62
            I V++VDDQA++R+GL  +L  +++I V++EA+ G  A+   R  RPDV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATSRILAEADWD-VRVLILTTFDPDEYVYQALRAGASAFVLKDIPADQLAGAVRTVA  121
            G+ AT+ + A++D + VR+L+LTTFD DE V  ALRAGA +F+ K   ++ L +AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  DGGALLAPSITRRLIG--RFTERRAVGSAPSRRVERLTDRERDvvvavaRGSSNSEIAQE  179
             G++ L+++ ++ +++  R   R A +     R   LT+RE DVV++ ARG  N  IA++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LFIGPATVKSHVSSILTKLGLRDRTQVVVFAYESGLVEAGDH  221
            LFI+PATVK+H++  +TKL  RDR Q+V +A+ SGLV+ ++H
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

140) SCC121.20c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 155/220 (71%), Gaps = 7/220 (3%)

Query  1    MLLADDQNLVRAAF-ALLVASAPDMEVVGEAGTGRQAVELARARRADLVVMDVRMPDLDG  59
            ++L DDQ ++RA++ ++L    +++ V+GEA+ GR A  + R+ R+D+V+MD+RMP LDG
Sbjct  4    VVLVDDQAMIRAGLRGIL--EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDG  61

Query  60   IEATRLIAADEDLAGVRVLVLTTYDTDENIVEALRAGASGFLVKDTRPAELLEAIRTVTA  119
            + AT  + AD DL +VR+LVLTT+D DE+++ ALRAGA GFL K + +  L+ A+ +V+ 
Sbjct  62   VGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  120  GDALLSPGPTARLIE---RFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEA  176
            GD+ LS+G++  ++    R  RS++ ++  +  +  L++RE +V+   ARGL+N  IA  
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA-TLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGLVTPG  216
            L +SP T KTH++R M KL+ARDR+QLV +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

141) EGYY_26360 in NC_015738


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 98/212 (47%), Positives = 151/212 (72%), Gaps = 6/212 (2%)

Query  17   RSGFKLVLLSYDGIDVVGEARDGEQAVELAARLAPDVVLMDIRMPRMNGIEATRVICGDP  76
            R+G++  +L   GI V+GEA DG  A  +     PDVVLMD+RMP ++G+ AT  + +DP
Sbjct  14   RAGLR-GILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  77   AFAGVHVLILTTFDFDEYVYDALAAGASGFLLKDADPDEIVAAVRAVAQGDALIEPSITR  136
             + +V++L+LTTFD DE V  AL AGA GFL K AD++ ++AAV AVA+GD+ + ++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  137  RLIEAF-VASRPASSLAMKGSRTAGFESLTDREREILILVARGLSNDEIGEDLFISPATV  195
             ++  +   +R+A+ + +  +RTA   +LT+RE ++++  ARGL N  I+ DLFISPATV
Sbjct  133  TVVSDLRRRGRSATDVELI-ARTA---TLTHRETDVVLGAARGLDNVSIARDLFISPATV  188

Query  196  KTHLARIMAKLDAHDRAQLVVLAYENGLVKPG  227
            KTHL R M+KL+A+DR+QLV +A+ +GLV+ +
Sbjct  189  KTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

142) SC1A9.04 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 148/218 (68%), Gaps = 4/218 (1%)

Query  5    IRVVICDDQALIRTGLATIVDAQPDLEVVGECGDGQTGVDLARELRPDVVVMDIRMPVLD  64
            I VV+ DDQA+IR+GL  I++ ++++ V+GE +DG+++  + R  RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  MGAALLDPDVTRRLVGRYAARIRPAEGT---ARDIPLTPRETEVLRLIADGLSNSEIAAA  181
             G + L ++ ++ +V+    R R+A +    AR   LT RET+V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGLVT  219
            L ISP TVKT ++R +TKL+ RDR Q V +A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

143) SFUL_1171 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 148/222 (67%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE  G + V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQISGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYADHLPSGED-PVPDALHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ D  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

144) Amir_7009 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/223 (45%), Positives = 155/223 (70%), Gaps = 8/223 (3%)

Query  1    MIQVLLVDDQELMRMGFRMVLNAQEDISVVGEAGDGLDAVHMAEQLRPDVVLMDVRMPVL  60
            MI+V+LVDDQ ++R G+R +L+ + +I V+GEA+DG  A  +    RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEAT---KRITEAGTARVLVMTTFDMDEYALSALRSGASGFLLKDTPPADLVSALRAV  117
            DGV AT   +   +  + R+LV+TTFD DE  L+ALR+GA GFL K + +  L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTKrllgrflgegggtlrDASVLD---ALTEREREVLVLIAKGMSNTEIA  174
            A GD+ +S++ +K +++ +   G ++  D  ++    +LT+RE +V++  A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSAT-DVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  RKLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGLVRPGD  217
            R LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV  ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

145) SAV_6671 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 154/223 (70%), Gaps = 4/223 (1%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + ++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLD--KYAGHLPSGDEPVPDTLHTLTEREVEVLKLVARGLSNAEIAA  180
             G++ L+++ ++ ++   +  G+ +++ E ++ T  TLT+RE +V+   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  DLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            DLF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

146) SHJG_3092 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 149/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYATHLPSGEE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

147) SHJGH_2856 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 149/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYATHLPSGEE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

148) SCAB_73371 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (520),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 150/222 (68%), Gaps = 2/222 (0%)

Query  3    VRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            + V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEAMLAPSITRRLLDKYAEHLPSGDE-QVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ + ++     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

149) SCF51.20c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (517),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 101/218 (47%), Positives = 154/218 (71%), Gaps = 9/218 (4%)

Query  1    MLLADDQALLRATFRILIDSSEDMDVVAEAADGRDAVELTRTHRPDIVLMDIRMPGTDGL  60
            ++L DDQA++RA +R +++ + ++ V++EAADGR A  + R  RPD+VLMD+RMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   AATAEICADPALRGTRVLILTTFETDEHVARALRIGASGFLGKDVTAEELLDGIRTVaag  120
            +ATA + ADP L + R+L+LTTF+ DE+V  ALR GA GFL+K   +E L+ ++ +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  dallsaaaTRSLITRFLDSPDPRASPVPPEDL----AALTAREREVTALVADGKSDKEIA  176
            D+ LSA+A++++++ +      R+ +    +L    A+LT RE +V    A G  +  IA
Sbjct  123  DTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  AELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL  214
             +LF+SP TV+TH++RA TKL ARDR+QLV+ A+RSGL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

150) SACTE_1084 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  141 bits (517),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 149/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE  G + V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYADHLPSGEE-PVPDALHTLTEREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL+ RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

151) B737_0945 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 104/224 (47%), Positives = 154/224 (69%), Gaps = 10/224 (4%)

Query  1    MTRVLIADDQALLRGSFRVLVDSAPGLEVVGEASDGAEAVALTRLERPDVVLMDVRMPEM  60
            M  V++ DDQA++R+++R +++ A G+ V+GEA+DG  A A+ R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICAETD---VRVLMLTTFDLDEYVYSALRAGASGFLLKDTRPADLLAAIEVV  117
            DG+ AT  + A+ D   VR+L+LTTFD DE V +ALRAGA GFL K + +  L+AA+E V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDALLAPSVTRRLVAEFARLPSGP-----VTRLDGVTAREQEVLTLIARGLSNDEIAA  172
            A GD+ L+++ ++ +V+++ R   ++     ++R   +T RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV-RPTPP  215
             L ++ ATVKTH+ R + KL ARDR+QLV  A+ SGLV R+  P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

152) RAM_04830 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 104/224 (47%), Positives = 154/224 (69%), Gaps = 10/224 (4%)

Query  1    MTRVLIADDQALLRGSFRVLVDSAPGLEVVGEASDGAEAVALTRLERPDVVLMDVRMPEM  60
            M  V++ DDQA++R+++R +++ A G+ V+GEA+DG  A A+ R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICAETD---VRVLMLTTFDLDEYVYSALRAGASGFLLKDTRPADLLAAIEVV  117
            DG+ AT  + A+ D   VR+L+LTTFD DE V +ALRAGA GFL K + +  L+AA+E V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDALLAPSVTRRLVAEFARLPSGP-----VTRLDGVTAREQEVLTLIARGLSNDEIAA  172
            A GD+ L+++ ++ +V+++ R   ++     ++R   +T RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV-RPTPP  215
             L ++ ATVKTH+ R + KL ARDR+QLV  A+ SGLV R+  P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

153) AMES_0944 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 104/224 (47%), Positives = 154/224 (69%), Gaps = 10/224 (4%)

Query  1    MTRVLIADDQALLRGSFRVLVDSAPGLEVVGEASDGAEAVALTRLERPDVVLMDVRMPEM  60
            M  V++ DDQA++R+++R +++ A G+ V+GEA+DG  A A+ R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICAETD---VRVLMLTTFDLDEYVYSALRAGASGFLLKDTRPADLLAAIEVV  117
            DG+ AT  + A+ D   VR+L+LTTFD DE V +ALRAGA GFL K + +  L+AA+E V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDALLAPSVTRRLVAEFARLPSGP-----VTRLDGVTAREQEVLTLIARGLSNDEIAA  172
            A GD+ L+++ ++ +V+++ R   ++     ++R   +T RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV-RPTPP  215
             L ++ ATVKTH+ R + KL ARDR+QLV  A+ SGLV R+  P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

154) AMED_0948 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 104/224 (47%), Positives = 154/224 (69%), Gaps = 10/224 (4%)

Query  1    MTRVLIADDQALLRGSFRVLVDSAPGLEVVGEASDGAEAVALTRLERPDVVLMDVRMPEM  60
            M  V++ DDQA++R+++R +++ A G+ V+GEA+DG  A A+ R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICAETD---VRVLMLTTFDLDEYVYSALRAGASGFLLKDTRPADLLAAIEVV  117
            DG+ AT  + A+ D   VR+L+LTTFD DE V +ALRAGA GFL K + +  L+AA+E V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDALLAPSVTRRLVAEFARLPSGP-----VTRLDGVTAREQEVLTLIARGLSNDEIAA  172
            A GD+ L+++ ++ +V+++ R   ++     ++R   +T RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV-RPTPP  215
             L ++ ATVKTH+ R + KL ARDR+QLV  A+ SGLV R+  P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

155) SAV_6039 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 101/220 (46%), Positives = 157/220 (72%), Gaps = 4/220 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAARLAGETQADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  +   +++DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLISADPGLTHVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNAIRVAA  122
            G++AT  + ADP+L  VR+++LTTF+ DE V+ +LRAGA GFL+K+A++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPAATKGLIAKFLAQGDGLDDERDPARAERLDALTGREREVLVQVAGGHSNDEI  182
             G++ LS++A+K +++ +  +G +     D     R  +LT RE +V++  A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRS---ATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  222
            A  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

156) SGR_5850 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 147/222 (67%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE  G + V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYADHLPSGED-PVPDALHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ D  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

157) SBI_08471 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 99/223 (45%), Positives = 154/223 (70%), Gaps = 4/223 (1%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + ++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLD--KYAGHLPSGEEPVPDTLHTLTEREVEVLKLVAKGLSNAEIAA  180
             G++ L+++ ++ ++   +  G+ +++ E ++ T  TLT+RE +V+   A+GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  DLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            DLF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

158) SCATT_51560 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 154/218 (71%), Gaps = 4/218 (1%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEPDLAVVGEAGDGLQALEQVRAMQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE ++++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSVTRRLLD--KYADHLPSGEDPVPQALGTLTEREVEVLKLVARGLSNAEIAA  180
             G++ L+++ ++ ++   +  ++ +++ + ++++ +TLT+RE +V+   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  ELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV  218
            +LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

159) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 154/218 (71%), Gaps = 4/218 (1%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEPDLAVVGEAGDGLQALEQVRAMQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE ++++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSVTRRLLD--KYADHLPSGEDPVPQALGTLTEREVEVLKLVARGLSNAEIAA  180
             G++ L+++ ++ ++   +  ++ +++ + ++++ +TLT+RE +V+   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  ELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV  218
            +LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

160) B446_08540 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 149/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEAMLAPSITRRLLDKYATHLPSGEE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

161) SVEN_1246 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 150/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQAQDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A   +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYSAHLPTGEE-QVPDTLSTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  ++ + ++    +TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAN  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

162) Strvi_6659 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 153/223 (69%), Gaps = 4/223 (1%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + ++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPATELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLD--KYAGHLPSGEEPVPDTLHTLTEREVEVLKLVARGLSNAEIAA  180
             G++ L+++ ++ ++   +  G+ +++ E ++ T  TLT+RE +V+   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  DLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            DLF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

163) SCI41.37 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (516),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 97/222 (44%), Positives = 150/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + ++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALKAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ AL+AGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEAMLAPSITRRLLDKYATHLPSGDE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
            +G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

164) AMIS_42300 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 106/216 (50%), Positives = 149/216 (69%), Gaps = 6/216 (2%)

Query  6    VRVLLADDETLVRAGFRVLLERTPGIEVVGEARDGDEAIALARAHRPDVVLMDVRMPGTD  65
            + V+L DD++++RAG+R +LE  +GI V+GEA DG  A+A+ R+ RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLTATRRILADDRLPGVRIIVLTTFELDEYVYAALRAGASGFLLKDLTPDELRHAVRVVA  125
            G+ AT  + AD  L +VRI+VLTTF+ DE V AALRAGA GFL K   ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGDALLAPAVTRRLIARF-----TTAEPETLPGLETLTAREREVVALVADGLSTEEIAAR  180
             GD+ L+++ ++ +++ +     ++++ E ++   TLT RE +VV   A GL    IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LRMSRATAKTHTNRAMTKLGARDRAHLVVLAYRHGL  216
            L +S AT KTH NRAMTKL ARDR++LV +A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

165) BLASA_1015 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 106/221 (48%), Positives = 150/221 (68%), Gaps = 5/221 (2%)

Query  3    VRVVVADDQPMVRAGLRSLLEREDGVAVVGDARDGEDALTCIRRLEPDVVLMDIRMPVLD  62
            + VV+ DDQ+M+RAGLR++LE + G+ V+G+A DG  A++ IR   PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRRLVADG--ARTRVLVLTTFDLDEYVFDALRAGASGFLLKDATAEELLSAVRTIA  120
            G++AT  L AD      R+LVLTTFD DE V+ ALRAGA GFL K A +E L++AV ++A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGEAVLAPSVTRRVIEAFGTAPRA--DPRLADRLAVLSPREVEVLRLLGRGRANAEIARD  178
             G++ L+++ ++ V+  +    R+  D  L  R A L+ RE +V+   +RG  N  IARD
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVVSDATAKTHVSNVLTKLGLRDRVQAVIFACESGLLRTGE  219
            L +S AT KTH++  +TKL  RDR Q V +A  SGL+  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

166) AMIS_29370 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 153/217 (71%), Gaps = 7/217 (3%)

Query  1    MLLADDQALVRTGFRMILENAPDMRVVGEASDGAEAARSVRAARPDIVLMDVRMPGVDGV  60
            ++L DDQA++R+G+R ILE+A ++RV+GEA+DG  A   +R++RPD+VLMD+RMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATRRICADDTEGRTRVLILTTFDLDEYVYAALRAGASGFLLKDTLAPDLLSAIRVVTRG  120
             AT  + AD      R+L+LTTFD DE V AALRAGA GFL K + +  L++A+  V++G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  ESVVAPSVTRRLLD----RYVTAGEGPVVAPTALESLTEREREVLGLIARGLSNAEIAGR  176
            ++ ++++ ++ ++     R  +A +  ++A TA  +LT+RE +V+   ARGL N  IA  
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LFLSEGTIKTHVSRVLTKLALRDRVQAVVFAYECGLV  213
            LF+S +T+KTH++R +TKL  RDR Q V +A+  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

167) Cfla_2683 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 94/215 (44%), Positives = 153/215 (72%), Gaps = 14/215 (6%)

Query  5    VVVADDHPVVRSGIVAMLDLEPDLEVVGEAGDGERAVALAHELQPDVVLMDLRMPGLDGA  64
            VV+ DD++++R+G+ ++L+ ++++ V+GEA+DG  A A+ +  +PDVVLMDLRMP LDG 
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATA--RVVTELPGVHVLVLTTYETDTDILRAVEAGATGYLLKDTPREQLVAGVRAAARG  122
            +ATA  R   +L +V++LVLTT++ D ++L A+ AGA G+L K +  E L+A+V A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  ESALSPSIAQRLV----RQVRGGTG-------ERLTPREREVLAGVARGLSNAAVGRELF  171
            +++LS++ A+ +V    R+ R++T+         LT RE +V+ G ARGL N +++R+LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  172  ITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL  206
            I+ ATVKTHL RA +KL   DR + V++A+  G++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

168) Krad_2658 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 103/213 (49%), Positives = 152/213 (72%), Gaps = 1/213 (0%)

Query  1    MIVDDQEMIREGLRTIIGAHPDLQVAAVAGDGLEALKLLESTAVDVVLMDIRMPGIDGVE  60
            ++VDDQ MIR GLR I+  +++++V + A+DG  A+ ++ ++  DVVLMD+RMP +DGV 
Sbjct  5    VLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  61   atrriratrssaQVRICVLTTFDNDENVLRALKAGADGFLSKGAGPTELTAGILDIAGGG  120
            AT  +RA      VRI VLTTFD DE+VL AL+AGADGFL+K+A++  L A++  +A G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  121  SALSPTALSAVVTHVAEDNSVPDDPQALKLFAALTAREREVVEAIVTGLDNQQIAEAMFV  180
            ++LS+ A  +VV+++      + D + +   A+LT RE +VV +   GLDN  IA  +F+
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFI  183

Query  181  SPFTVKTHANRAMSKVGARDRAQLVSMAVRAGM  213
            SP TVKTH NRAM+K+ ARDR+QLVS+A R+G+
Sbjct  184  SPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

169) Sfla_5182 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 147/222 (67%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEGDIAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE  G I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAVELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYADHLPSGEE-PVPDALHTLTEREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

170) F750_1452 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 147/222 (67%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEGDIAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE  G I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAVELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAMLAPSITRRLLDKYADHLPSGEE-PVPDALHTLTEREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

171) BN159_6929 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 149/222 (68%), Gaps = 2/222 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + +I V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALKAGASGFLLKDAPANELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ AL+AGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEAMLAPSITRRLLDKYATHLPSGDE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLVRPGAQ  223
            LF+S +TVKTH+ + +TKL  RDR Q    A+ SGLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

172) Cal6303_0033 in NC_019751


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 141/207 (69%), Gaps = 4/207 (1%)

Query  1    MIKVLIVDDQHLIRQGLRTLLELEPDLEVVGEAENGKEAIKLVAELTPEVVLMDIRMPIM  60
            MI V++VDDQ +IR GLR +LE ++++ V+GEA +G+ A+ ++    P+VVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAA--ALEIQSQYHQVKVLFLTTFDDENYVTSALKNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+A  AL  +++ + V++L LTTFD+++ V +AL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HKGYTQLGPGIIKKILTQFPPTNPVSTQTP-PTVLAELTPRETEVLHLIANGANNREIAQ  177
             KG T L++G  K +++++      +T+    +  A LT RET+V+   A G +N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QLYISEGTVKNHVTNILNRLNLRDRTQ  204
            +L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

173) BN159_7851 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (513),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 102/218 (47%), Positives = 158/218 (73%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFRALLDAQPDIevageaadgeeavravreLAPDVVLMDIRMPVL  60
            MI V+L DDQ+++RAG+R++L+ +++I V GEAADG  A   +R   PDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITEDDRLKDVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAV  120
            DG++AT  +  D  L+ V++++LTTF+ DE V+ A+R+GA GFL K +++E L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VGGDALLSPGVTRRLIAEFAARSKEPAAADAL---AELTEREREVMALVGIGLSNEEIAR  177
              GD+ LS+G ++ +++++  R++ ++  + +   A LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

174) KSE_66540 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (513),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 148/217 (69%), Gaps = 2/217 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAESDLVVVGEAGDGQQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE ++++ V+GEA+DG+ A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRIAGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDVPAEELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K   +E L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGAAMLAPSVTRRLLDMYATKLPSGDEAPPQA-LTVLTEREVEVLRLVARGLSNAEIAAE  181
             G + L+++ ++ ++     +  S+ +    A  + LT+RE +V+   ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGLV  218
            LF+S +TVKTH+ + +TKL+ RDR Q    A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

175) SVEN_0704 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (513),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 105/218 (49%), Positives = 156/218 (72%), Gaps = 4/218 (1%)

Query  7    VIRVLLADDQSLVRAGFRALLDAQPDIevageaadggealeQVRALRPDVVLMDIRMPRL  66
            +I V+L DDQ+++RAG+R++L+ +++I V GEAADG  A+  +R+ RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  67   DGLEATRRITDDPGLTDVRVVMLTTFELDEYVFEAIRAGASGFLVKDTEPEELLRAVRAV  126
            DG+ AT  +  DP+L  VR+++LTTF+ DE V+ A+RAGA GFL K +++E L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  VDGDALLSPGVTRRLIEEF---aarskapgaaaSLGALTEREREVMALVGIGLSNGEIAR  183
              GD+ LS+G ++ ++ ++   +  +      A  ++LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  184  RLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLV  221
             L +SP T KTH++RAM KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

176) B446_11330 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  140 bits (513),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 155/219 (71%), Gaps = 3/219 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVLLAQESGADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  + + S +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLISADPSLARVRVVILTTFEVDDYVVQALRAGASGFLGKGSEPEELLNAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ ALRAGA GFL+K++++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGDALLSPVATKGLIARFLAQGDGDDGRDPARSDRLDALTGREREVLVQVAGGHSNDEIA  182
             GD+ LS+ A+K +++ +  +G +    D     R  +LT RE +V++  A G  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT--DVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  221
              L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

177) Caci_1951 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (510),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 104/218 (48%), Positives = 159/218 (73%), Gaps = 4/218 (1%)

Query  5    IRILLADDQALLRGTFRLLLDSTPDFevvaeagdgaaavKLAQELCPDLVLMDIRMPVLD  64
            I ++L DDQA++R+ +R +L+  +++ V++EA+DG +A  + +   PD+VLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRLIAADPALGSVKVLILTTFEQDEYVAEALRAGAGGFLGKGVDPEELLRAIRIVA  124
            G+ AT  + ADP L +V++L+LTTF+ DE V  ALRAGA+GFL+K+ D+E L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  GGNSLLSPAATRALIARFLAQPSDTAPTVS--APLDALTARELEVVTLVATGLSNEEIAG  182
             G++ LS++A++++++  L + + +A  V   A   +LT RE +VV   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  QLFVTPLTAKTHVNRAMTKLGARDRAQVVVIAYESGLV  220
            +LF++P T KTH+NRAMTKL ARDR+Q+V IA+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

178) PFREUD_17750 in NC_014215


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (512),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 104/220 (48%), Positives = 150/220 (69%), Gaps = 7/220 (3%)

Query  1    MTTVMLVDDQEMIRKGLRVIIDAYPGLDVVAEAGDG---FTAVRRLDSVQVDVILMDLNM  57
            M  V+LVDDQ MIR GLR I++  +G+ V++EA+DG   F+ +R   + + DV+LMDL M
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIR---GSRPDVVLMDLRM  56

Query  58   PGMDGVEAVRRIREARGPEGPRILVLTTFDQDENVLAAMRAGANGFLGKGAGPDELAEGI  117
            P +DGV A   +R   + ++ RILVLTTFD DE+VLAA+RAGA+GFL+K+A+++ L  ++
Sbjct  57   PILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  118  RRVAAGAHALSDNAIGALVSHVSDPHAVPPDPDKAKLFEGLTPrelevvrlvveGLDNAE  177
              VA G  +LS  A  ++VS++      + D +       LT RE +VV     GLDN  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IGRRVFISPFTAKTHVNRAMAKVGARDRAQLVSLAVQAGI  217
            I+R +FISP T KTH+NRAM+K+ ARDR+QLVS+A ++G+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

179) SCAB_1061 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (512),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 102/221 (47%), Positives = 155/221 (71%), Gaps = 4/221 (1%)

Query  5    VIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGL  64
            V++VDDQAM+RAG+ ++L  +++I V+GEA+DG  +  + R ++PDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EAARRLLEPAPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVA  124
             A+  L  + P++ +  R+L+LTTFD D+ V  ALRAGA GFL K A +  LIAAV  VA
Sbjct  63   GATAAL-RADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGDALLAPSVTRRLIADFARQ-RPAVRGKPALRLKRLTERETEVLTLVARGQSNGEIAQT  183
             GD+ L+++ ++ +++D+ R+ R+A       R   LT+RET+V+   ARG  N  IA+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE  224
            L ++  TVKTH++R +TKL+ RDR+Q V +A+ SGLV  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

180) Noca_1020 in NC_008699


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 101/224 (46%), Positives = 154/224 (69%), Gaps = 11/224 (4%)

Query  3    IRVLVVDDQSMVRAGLRMLLADEPDIEVVAEAGNGREA--VAQAARFHPDVVLMDIRMPE  60
            I V++VDDQ+M+RAGLR +L ++++I V++EA++GR A  V +++R  PDVVLMD+RMP 
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMPI  58

Query  61   LDGLEATRRILAAGD--TARVLVLTTFNLDEYVYEALGAGASGFVLKDDPPEQLIAAVRT  118
            LDG+ AT  + A  D  + R+LVLTTF+ DE V  AL AGA GF+ K   +E LIAAV +
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  IADGDALLSPTVTRRVIREFTRLRRQPPPAAV----ATLTGRELEVFRLITQGLSNAEIG  174
            +A GD+ LS+  ++ V+ ++ R  R +    +    ATLT RE +V    ++GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  RELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGIFAPTDR  218
            R+LFIS +TVKTH+ R   KL+ RDR+Q + +A+++G+   +++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

181) ACPL_6578 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (510),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 146/220 (67%), Gaps = 12/220 (5%)

Query  1    MIGVLIVDDHPVVRDGLRGMFTADDRFTVLGEAGDGREALAVAAAVQPDVILMDLRMPVM  60
            MI+V++VDD++++R GLRG++  D  + V+GEA+DGR A+AV  + +PDV+LMDLRMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTTIRSLQESGSVA--RVLVLTTYDTDSDVLPAIKAGATGYLLKDAPREELFRAVVAA  118
            DGV +  +L+    +   R+LVLTT+D D +VL+A++AGA G+L K A  E L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HRGESVLSPAVAGRLMGRLRAPA---------GEKEPLSQRELEVLTLIARGCSNRETAG  169
             +G++ LS++ A  +++ LR  +         +    L++RE +V+   ARG  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  170  RLFISEATVKTHLLHAYAKLGVRDRAAAVATAFERGLLGR  209
             LFIS ATVKTHL +A +KL  RDR+  V+ AF  GL+ R
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

182) Snas_1509 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 153/216 (71%), Gaps = 3/216 (1%)

Query  4    IRLVVADDQKLIRMALSTLAAGEPDIELVAEAADGKAALTAIRDHSPDVLLLDIRMPIMG  63
            I +V+ DDQ +IR +L  +   +++I +++EAADG++A++ IR+  PDV+L+D+RMPI++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLEVLRHIETDPD-ATVRVIMMTTFDIDQYVFESLEHGAAGFLTKDTDPEFILHAVRVVA  122
            G+     + +DPD  +VR++++TTFD D+ V+ +L  GA GFL+K +D+E ++ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGESLLSPGVTRRVIDRFTR-GRHARTGEPHPGLDSLTARETEILGWVATGLSNDEIAER  181
             G++ LS+G ++ V+  + R GR A   E  +   +LT RET+++   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVVSPATVRTHVGRAMMKLRARDRAQLVVIAYRSDI  217
            L +SPATV+TH+ RAM KL+ARDR+QLV IA+RS++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

183) XNR_5174 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 146/217 (68%), Gaps = 2/217 (0%)

Query  3    IRVLLVDDQPLLRTGFRMILEAEQDVAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMD  62
            I V+LVDDQ+++R+G+R ILE + ++ V+GEA+DG  A+  +R+ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQAIRVVA  122
            GV AT  + +     + ++LVLTTFD DE V+ ALRAGA GFL K A ++ L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGEAMLAPSVTRRLLDKYAEHLPSGDE-PVPDTLHTLTDREVEVLKLVARGLSNAEIAAD  181
             G++ L+++ ++ ++     +  S+ +  +     TLT+RE +V+   ARGL N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGLV  218
            LF+S +TVKTH+ + + KL  RDR Q    A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

184) Sfla_3358 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 4/221 (1%)

Query  5    LIRVLIVDDQAMVREGFSVLLNAMPGIEVVGEAVDGRQAVSQVKALRPDVVLMDIRMPEL  64
            +I V++VDDQAM+R G+  +L+  +GI V+GEA DGR A + +++ RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   NGIDATREIVaad--adaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVV  122
            +G++AT  + A       ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ASGEALLAPTVTRRLITEFSKIAEAPRPPAM-ARIGDLTERETEVLVLIAQGLSNLEIAS  181
            A G++ L++  ++ +++++ + + ++    + AR + LT+RET+V++  A+GL N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  182  HLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  222
            +L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

185) F750_3382 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (512),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 150/221 (68%), Gaps = 4/221 (1%)

Query  5    LIRVLIVDDQAMVREGFSVLLNAMPGIEVIGEAVDGRQAVSQVKALRPDVVLMDIRMPEL  64
            +I V++VDDQAM+R G+  +L+  +GI VIGEA DGR A + +++ RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   NGIDATREIVaad--adaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVV  122
            +G++AT  + A       ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ASGEALLAPTVTRRLITEFSKIAEAPRPPAM-ARIGDLTERETEVLVLIAQGLSNLEIAS  181
            A G++ L++  ++ +++++ + + ++    + AR + LT+RET+V++  A+GL N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  182  HLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  222
            +L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

186) AMIS_66280 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 103/222 (47%), Positives = 151/222 (69%), Gaps = 8/222 (3%)

Query  3    ITVLLADDQHLVRAGFRSLLRRGRDIDVVGEASTGDEAVRAARTLKPDVVLMDIRMPGMD  62
            I V+L DDQ ++RAG+R++L  + +I V+GEA+ G  A    R  +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATRTLL--RDLPDCKVIILTTFETDEYVFSALAAGASGFLTKEIDPDGLRNAVRVVA  120
            G++AT +L    DL   ++++LTTF+ DE V++AL AGA GFL+K  D+++L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALLSPSVTRRVVGQFAHRpvpaagmpggeppggDRLAVLTDREREVVRLVATGLSNV  180
             GD+ LS++ ++ VV+++ +R  +A+++         R A LT+RE +VV   A GL NV
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI-----ARTATLTHRETDVVLGAARGLDNV  175

Query  181  EIAAQLVISPLTAKTHVTRAIAKLGVRDRVQLVIVAFEDGLI  222
             IA +L ISP T KTH+ RA++KL  RDR QLV +AF  GL+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

187) B737_9123 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 153/217 (71%), Gaps = 6/217 (2%)

Query  1    MIRVVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIELAERLRPDVVLMDVRMPVL  60
            MI VV+VDDQ ++R G+R +L  +A+I V+GEA+DG  A+ +    RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATKRIVAD---GTARVLVMTTFDLDEYVYAALQGGASGFLLKDTQPDHLVSALRAV  117
            DGV AT  + AD    + R+LV+TTFD DE V AAL++GA GFL K ++++ L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTRRLLD--RFVGTGGSPMRDTAELDVLTDREREVLVLIAKGMSNLEIAD  175
            A GD+ +S++ ++ ++   R  G +++ +   A    LT+RE +V++  A+G+ N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL  212
             LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

188) RAM_47490 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 153/217 (71%), Gaps = 6/217 (2%)

Query  1    MIRVVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIELAERLRPDVVLMDVRMPVL  60
            MI VV+VDDQ ++R G+R +L  +A+I V+GEA+DG  A+ +    RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATKRIVAD---GTARVLVMTTFDLDEYVYAALQGGASGFLLKDTQPDHLVSALRAV  117
            DGV AT  + AD    + R+LV+TTFD DE V AAL++GA GFL K ++++ L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTRRLLD--RFVGTGGSPMRDTAELDVLTDREREVLVLIAKGMSNLEIAD  175
            A GD+ +S++ ++ ++   R  G +++ +   A    LT+RE +V++  A+G+ N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL  212
             LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

189) AMES_9122 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 153/217 (71%), Gaps = 6/217 (2%)

Query  1    MIRVVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIELAERLRPDVVLMDVRMPVL  60
            MI VV+VDDQ ++R G+R +L  +A+I V+GEA+DG  A+ +    RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATKRIVAD---GTARVLVMTTFDLDEYVYAALQGGASGFLLKDTQPDHLVSALRAV  117
            DGV AT  + AD    + R+LV+TTFD DE V AAL++GA GFL K ++++ L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTRRLLD--RFVGTGGSPMRDTAELDVLTDREREVLVLIAKGMSNLEIAD  175
            A GD+ +S++ ++ ++   R  G +++ +   A    LT+RE +V++  A+G+ N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL  212
             LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

190) AMED_9260 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 153/217 (71%), Gaps = 6/217 (2%)

Query  1    MIRVVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIELAERLRPDVVLMDVRMPVL  60
            MI VV+VDDQ ++R G+R +L  +A+I V+GEA+DG  A+ +    RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATKRIVAD---GTARVLVMTTFDLDEYVYAALQGGASGFLLKDTQPDHLVSALRAV  117
            DGV AT  + AD    + R+LV+TTFD DE V AAL++GA GFL K ++++ L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTRRLLD--RFVGTGGSPMRDTAELDVLTDREREVLVLIAKGMSNLEIAD  175
            A GD+ +S++ ++ ++   R  G +++ +   A    LT+RE +V++  A+G+ N+ IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL  212
             LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

191) SBI_03418 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 159/219 (73%), Gaps = 4/219 (1%)

Query  1    MIKVLLADDQRLVRAGFRSILEDEDDITvvaeagdgdeavaaCRETRPDVALLDIRMPGT  60
            MI V+L DDQ ++RAG+R+ILED + I V++EA+DG  A A  R +RPDV L+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLQAAGRITADPRLESVKVVILTTFDLDDYIYGALRAGATGFLVKDTEPEELIHAVRVA  120
            DG+ A++ + ADP L++V++++LTTFD D+ + +ALRAGA GFL K +++E LI AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HRGDALISPSVTRRLIAEFAGRVQAP---EPGPRLRALTDREREVMRLVAAGLTNDEIAA  177
             +GD+ +S++ ++ +++++  R +++   E  +R  +LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGMVS  216
             L +SPAT KTH++R MTKL+ RDR+QLV +A+ SG+V+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

192) BN159_1200 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/214 (47%), Positives = 156/214 (73%), Gaps = 1/214 (0%)

Query  5    ILIVDDQAEIRAGIKAMLRLDPGLVVAADLSDGLQVVPYLRENPVDLVLMDIRMPGIDGV  64
            +++VDDQA IRAG++++L  D+G+ V ++ +DG    + +R +  D+VLMD+RMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRRIRKEHPPEKLRVIVLTTFDQDDIVLAALRAGANGFLSKTVSPAELVAGINEVVgg  124
             AT  +R +   + +R++VLTTFD D+ VLAALRAGA+GFL+K+  +  L+A+++ V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ggalsaaataaligHMTDSPPPVIDQELLRRFDALTPRERDVVILVASGLGNDEIAAQMS  184
            + +LSA+A+ ++++++     +  D EL+ R  +LT RE DVV+  A GL+N  IA ++ 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  185  VSPFTVKTHAVRAMTKVGARDRAQLVSFTFRAGL  218
            +SP TVKTH  RAMTK+ ARDR+QLVS++FR+GL
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

193) Strvi_7700 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (510),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 155/217 (72%), Gaps = 1/217 (0%)

Query  1    MTRILIVDDQDDMRAGIRTMLALDPSLVVTGDLSDGLQVVPFLRDHPVDLVLMDIRMPGI  60
            M  +++VDDQ  +RAG+R +L  D+++ V G+ +DG    + +R+   D+VLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATRRIRKEHPPEELRVIVLTTFDQDDIVLAALRAGANGFLSKTVSPAELVAGISEV  120
            DGV AT  +R +   + +R++VLTTFD D+ VLAALRAGA+GFL+K+  +  L+A++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VRgggalsaaataaligHMTDSPPPVIDRELLRRFDALTPRERDVVVLVASGLGNEEIAA  180
             +G+ +LSA+A+ ++++++     +  D EL+ R  +LT RE DVV+  A GL+N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  QMSVSPFTVKTHAVRAMTKVGARDRAQLVSFTFRAGL  217
            ++ +SP TVKTH  RAMTK+ ARDR+QLVS++FR+GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

194) SHJG_3644 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/219 (46%), Positives = 155/219 (71%), Gaps = 3/219 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAKEHGPDVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  + +   PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRQIGADPSLAQVRVVILTTFEVDDYVVRALRAGASGFLGKGSEPDELLNAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ ALRAGA GFL+K+++++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPAATKGLIARFLAggddgdgpdpARSERLGTLTGREREVLVLVAGGHSNDEIA  182
             G++ LS++A+K +++ +     +  + D     R +TLT RE +V++  A G  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  221
              L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

195) SHJGH_3409 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/219 (46%), Positives = 155/219 (71%), Gaps = 3/219 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAKEHGPDVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  + +   PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRQIGADPSLAQVRVVILTTFEVDDYVVRALRAGASGFLGKGSEPDELLNAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ ALRAGA GFL+K+++++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPAATKGLIARFLAggddgdgpdpARSERLGTLTGREREVLVLVAGGHSNDEIA  182
             G++ LS++A+K +++ +     +  + D     R +TLT RE +V++  A G  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  221
              L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

196) AORI_0108 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 149/220 (68%), Gaps = 7/220 (3%)

Query  3    IRVVLADDQVLVRAGFRVLLETEDGFEVCAEAGDGEQAVAAAVEHRPDIVVMDIRMPGVD  62
            I VVL DDQ ++RAG+R +LE + G+ V +EA+DG  A A     RPD+V+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRITANPELAGVKVLVLTTFDVDEYVYEALRAGASGFLLKDTDPVELLRALKVVA  122
            G+ AT  + A+P+L +V++LVLTTFD DE V  ALRAGA GFL K +D+  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPTVTRRLIAEFVDRPENRRID----VSAVREITDREREVLGLVAGGMSNDEIA  178
             G++ L++  ++ +++++  R   R       ++    +T+RE +V+   A G+ N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AQLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVS  218
             +L IS AT +TH++R MTK+ ARDR+QLV +A+ SGLV+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

197) ANA_C20276 in NC_019439


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 141/207 (69%), Gaps = 5/207 (2%)

Query  1    MIKVLLVDDQSLIRQGLRALLELEADIEIVGEAENGQIAINLVEKLKPDVILMDIRMPII  60
            MI V+LVDDQ++IR GLR++LE +A+I ++GEA +G+ A+ ++   +PDV+LMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATKEI--NHHFPHSKILILTTFDDDEYVKAGLQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  +  + ++   +IL+LTTFD+DE V A+L+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  DKGYSQLGPGIVKKLVTQFPANSQPVLAVP--ANLAELTPREKEVLRLIAIGDNNREIAK  176
             KG + L++G  K +V+++   +++   V   A  A LT RE +V+   A G +N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  KLYISEGTVKNHVTNILNRLSLRDRTQ  203
             L+IS +TVK H+   + +L  RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

198) Sros_4577 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 97/223 (44%), Positives = 155/223 (70%), Gaps = 11/223 (4%)

Query  1    MIRVMLADDQALLRVSLSALLNTEPGMRVVGAAENGAEAIDLAADLRPDVVLMDVRMPGT  60
            MI V+L DDQA++R +L ++L+ ++G+RV+G A +G  A+ +  + RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIDATRKITEDP---SIRVVILTSFDLDEYVFAGLRAGASGFLLKDSPPEDLLTAIRVV  117
            +G++AT  +  DP   ++R+++LT+FD DE V+A+LRAGA GFL K + +E L++A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGEALLTPAATRRLIERFTATPPSPAD-RLPESTPSRKILATLTDRERDVLARVARGMS  176
            A G++ L+++A++ ++  +     S++D  L   T      ATLT+RE DV+   ARG+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------ATLTHRETDVVLGAARGLD  173

Query  177  NAEIAADLVLATSTIKTHLTNLLAKTEARDRAQLVIFAYESGL  219
            N  IA DL ++ +T+KTHL   ++K +ARDR+QLV +A+ SGL
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

199) PFREUD_01630 in NC_014215


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 93/223 (42%), Positives = 156/223 (70%), Gaps = 9/223 (4%)

Query  14   IRLLLADDQEMVRVGFRMVLDSQPDMAVVAEAPNGRDAVDAVLHAAPGQAPDVALMDIRM  73
            I ++L DDQ M+R G+R +L+ ++++ V++EA++GR A   +     G  PDV LMD+RM
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVI----RGSRPDVVLMDLRM  56

Query  74   PVLDGVAATQKIVADSD---TRVLILTTFDLDEYVYSALQAGASGFLLKDAGPTELLAAI  130
            P+LDGV+AT  + AD+D    R+L+LTTFD DE V +AL+AGA GFL K A++  L+AA+
Sbjct  57   PILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  131  RAVASGDSVVAPSATRRLLERFVPTLPIAQSGGDTKKRLEALTDREREVLTLVGQGLNNT  190
             AVA GD+ ++++A++ ++  +      + ++ +   R  +LT+RE +V+   ++GL+N 
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  191  EIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAYDAGLVH  233
             IA  LF+++ATVKTH+ + ++KL+ RDR ++V +A+ +GLV+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

200) Strvi_7824 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  139 bits (509),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 155/221 (71%), Gaps = 2/221 (0%)

Query  78   IRVLLADDQRLVRSAFAMLVSSARDMDVVGQAGTGREAVELARTARADLVVMDIRMPDLD  137
            I V+L DDQ ++R+++  ++  A ++ V+G+A+ GR A  + R +R+D+V+MD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  138  GIEATRRIAADEDLAGVKVLVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVA  197
            G+ AT  + AD DL +V++LVLTT+D DE+++ ALRAGA GFL K + +  L+ A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  198  AGESLLSPGPTARLIARVLRlpdapppgapapaalaalSERERQVLALVARGLNNAEAAQ  257
             G++ LS+G++  +++  LR  + ++ +    A  A+L++RE +V+   ARGL+N   A+
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  258  TLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPS  298
             L +SP T KTH++R M KL ARDR+QLV +A+ SGLV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

201) SC3A4.14c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 160/217 (74%), Gaps = 1/217 (0%)

Query  3    IRVLLADDQALLRATFRILIDSDPHMTVVAEAADGQEAVALTLEHRPDVVLMDIRMPGTD  62
            I V+L DDQA++RA +R +++ D+ + V++EAADG+ A A+    RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATAGICARTDLSGTRVLILTTFEDDENVALALRSGASGFLGKDVGPDVLLAGIRTVA  122
            G++ATA++ A  DL++ R+L+LTTF++DE+V  ALR+GA GFL+K  +++ L+A++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDSLLSPTATRALITRFLASPTDDVplaaperlallterereVMALAALGKSNQEIADH  182
             GD+ LS+ A++++++ +         +    R A LT+RE +V+  AA G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV  219
            L +SP TV++H++RAMTKL+ARDR+QLV IA++SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

202) HMPREF9154_1891 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 101/217 (47%), Positives = 150/217 (70%), Gaps = 7/217 (3%)

Query  4    VRVLIADDQQLLRQSLAHLLDSQPGFRvvaeaatgveavSLARELVPDVVLMDIRMPQLD  63
            + V++ DDQ ++R +L  +L+ ++G+RV++EAA G  A ++ R   PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIAATRSIVRDPHLSEVRVLVLTMFDLDEYVFGALRAGASGFLLKDATPEALINAVRTVS  123
            G++AT ++  DP+L+ VR+LVLT FD DE V++ALRAGA GFL K A +E+LI AV +V+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGQALLAPSAITTLVES------CLPDATPSGRVADLTPRQTEILRLVARGLSNDQIERE  177
             G++ L+++A  T+V           D    +R A LT R+T+++   ARGL N  I R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LHISHATCKTHISALLSRLQARDRAQLVIAAYEHGLV  214
            L IS AT KTH++  +++L+ARDR+QLV  A+  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

203) L083_8058 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 101/224 (46%), Positives = 152/224 (68%), Gaps = 10/224 (4%)

Query  3    IRVLIVDDQPMYRAGLSAVLGAEDDITVIGEAADGEQAFARSRSLRPDVVLMDVRMPKLN  62
            I V++VDDQ+M RAGL ++L  + +I VIGEAADG  AFA  R+ RPDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIDATRRLLGADGPATVPRVIMITTFDIDDYVYAALEAGASGFLLKDADAQQLATAVRVV  122
            G++AT  L +  +  +V R++++TTFD D+ V AAL AGA GFL K AD++ L +AV  V
Sbjct  61   GVGATAALRADPDLNAV-RILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AQGDSLLAPQVTRRLIENFVSSRPAGLASTTV-----FNSLTDREREVFQLIAAGRSNAE  177
            A+GD+ L++  ++ ++ ++   R  G ++T V       +LT+RE +V    A G  N  
Sbjct  120  AKGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IGQDLFMAEQTAKSHVSRILTKLHLRDRVHAVLLAYETGLVTPG  221
            I++DLF++  T K+H++R +TKLH RDR + V +A+ +GLV  +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

204) BLASA_1061 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 150/223 (68%), Gaps = 2/223 (0%)

Query  3    IRVLIVDDEELVRTGLRLILEAEPDLTVVGTAPDGGSGVAAARRFRPDVVLMDIRMPGLD  62
            I V++VDD+ ++R+GLR ILE ++++ V+G A+DG S+ A  R  RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRRLLGDPDGVPCKVVVLTTFDVDEHVYEALRAGASGFLLKDVPADQLVHAIRVAA  122
            G++AT  L +DPD  + +++VLTTFD DE+V  ALRAGA GFL K   ++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPSVTRRLIaa-ftrrapaptgpppagLADLTSREVEVLELLADGLSNAEIGRR  181
             G++ L+++ ++ +++    R  +A      A  A LT RE +V+   A GL N  I+R 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVGEATVKTHVARVLAKLGVRDRVQAVIVAFRTGLVPVDRDP  224
            LF++ ATVKTH+ R ++KL  RDR Q V +AFR+GLV    +P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

205) Kfla_2340 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 157/222 (71%), Gaps = 4/222 (1%)

Query  1    MTRLLLVDDQPMLRIGFRMVFETQPDIEVVGEAGDGERAVAMTRALSPDVVLMDVRMPVV  60
            M  ++LVDDQ+M+R G+R ++E +++I V+GEA+DG  A A+ R+  PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIQATR--RIVETGSAARVLVLTTFDLDEYVFAALRAGASGFLLKDVPPEDLLGGIRAV  118
            DG+ AT   R     +A R+LVLTTFD DE V+AALRAGA GFL K   +E L++++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDAVVAPRVTRRLLDAFAARLPGAAP-DPDPRIGQLTDREREVLVEVAKGRSNAEIAG  177
            A GD+ +++  ++ ++  +  R  +A+  +  +R + LT+RE +V++  A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELMVSAATVKAHVGRILTKLELRDRVQIVVLAYETGVVRPGE  219
            +L +S+ATVK+H+ R +TKL+ RDR Q+V +A+ +G+V  +E
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

206) VAB18032_14620 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 151/218 (70%), Gaps = 2/218 (0%)

Query  17   IRVLLADDHHLVRTGFRVILEIEDDIEVVGEAADGHRAVSMTRALRPDVVLMDVEMPDVD  76
            I V+L DD+ ++R+G+R ILE + +I V+GEAADG+ A ++ R+ RPDVVLMD+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  77   GLEATRRIRAEQDQAGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALIEAIRVVA  136
            G+ AT  +RA+ D  +  +L+LTTFD D+ ++AALRAGA GFL K++ +E+LI A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  137  RGDGLLAPEITRRVIATFARPGGPSTGGTDPQAALRDLTPREREVLVLVAGGASNAEIAT  196
            +GD  L++  ++ V++ + R  G S+ + +  A    LT RE +V++  A G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  197  ALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQGVV  234
             L ++ ATVK+H++R ++KL+ RDR Q V +A+  G+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

207) VAB18032_18120 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 152/219 (70%), Gaps = 4/219 (1%)

Query  1    MIRVMLADDQTLVRAGLRALLQSEPDIEFVGEAADGEQTLRVAAQVRPDVLLMDIRMPRM  60
            MI V+L DDQ+++RAGLR++L+ +++I  +GEAADG  ++ V    RPDV+LMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIAARPELSDIRIVILTTFEHDQYIFRSLRAGASGFLVKDIEPaallqavrvv  120
            DG+ AT  + A P+L+ +RI++LTTF+ D+ ++ +LRAGA GFL K  ++ +L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aaGEALLAPSVTRRLIAEYAARSHEPPASPGLDQ---LTAREREVLMLIARGLTNQELAE  177
            A G++ L+++ ++ ++++   R++ +     + +   LT RE +V++  ARGL N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWGLVQ  216
             +  S AT KTH++R M KL ARDR Q+V +A+  GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

208) Cwoe_4855 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 107/232 (47%), Positives = 159/232 (69%), Gaps = 12/232 (5%)

Query  11   IRVALADDQALVRAGFRMLLDAEDGFDVVGEAADGEQAVELARASRPDVVLMDVRMPVLD  70
            I V L DDQA++RAG+R +L+ + G+ V+GEAADG  A  + R+SRPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  71   GIAATRQISGDPALDSVRVLMLTTFELDEYVFEALRAGASGFLLKDVEPVellralelia  130
            G++AT  + +DP L++VR+L+LTTF+ DE V+ ALRAGA GFL K  ++  L+ A+E +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  131  agegllaPSVTRRLIARFaalapppadaagtaddgaaalpaaERLEVLTDREREVVALVG  190
             G+  L+++ ++ +++ +              + +A+ +    R   LT+RE +VV   +
Sbjct  121  KGDTSLSAGAAKTVVSDL-----------RRRGRSATDVELIARTATLTHRETDVVLGAA  169

Query  191  AGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVVLAYESGLVRPGE  242
             GL N  +A  L ISPAT KTH++RAM KL+ARDR+QLV +A+ SGLV  +E
Sbjct  170  RGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

209) SC5F7.36c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (507),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 100/220 (46%), Positives = 157/220 (72%), Gaps = 4/220 (1%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGaeaarlaaeqraDVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  +    R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMISADPSLAHVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPEELLSAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ +LRAGA GFL+K++++E L++A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEALLSPTATKGLIARFLAQQDTTDEDRDPARAERLESLTVREREVLVQVAGGHSNDEI  182
             G++ LS+ A+K +++  L +++ +  D +     R  +LT RE +V++  A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVEL--IARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  222
            A  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

210) SACTE_1869 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  138 bits (506),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 101/221 (46%), Positives = 150/221 (68%), Gaps = 4/221 (1%)

Query  3    IRVIIVDDQAMVRAGFAALLAAQSDIEVVGQAPDGRQGVEVSRRTCPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L  +++I V+G+A+DGR +  V R + PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAAARELLSAPAGTDHRPKVLMLTTFDVDDYVYEALRVGASGFLLKDAPPADLIAAVRV  122
            G++A+  L + P     R  +L+LTTFD D+ V  ALR GA GFL K A +  LIAAV  
Sbjct  61   GVGATAALRADPDLNAVR--ILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGDALLAPSVTRRLIADFARQRPSGAFRSGPARRLKGLTPRETEVLELVARGLSNQEI  182
            VA GD+ L+++ ++ +++D+ R+R  +A       R   LT RET+V+   ARGL N  I
Sbjct  119  VAKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AGRLVVAEQTVKTHVSRILAKADLRDRAQAVIFAYESGLVE  223
            A  L ++  TVKTH++R ++K + RDR+Q V +A+ SGLV+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

211) Sros_4672 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (504),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 139/200 (70%), Gaps = 7/200 (3%)

Query  1    MIRVVIVDDDPMVRTGLRLILGGEPDLDLVGDAGDGRQAMTVVRDMRPDVVLMDIRMPVQ  60
            MI VV+VDD++M+R+GLR IL  ++++ ++G+A+DGR A +V+R+ RPDVVLMD+RMP+ 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTTTELLLDRP--SPPRILVLTTFDADDMVLRALRLGAHGFLLKDTPPAKMIEAVRAV  118
            DG+ +T  L   P  ++ RILVLTTFD+D+ VL ALR GA+GFL K + +  +I AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGEPVLSPSVAHQVIAAATSRYKPQAVKEL----DQLTEREREVAIEVAKGSSNTEIAT  174
            A+G+  LS++ A  V++    R ++ +  EL      LT+RE +V +  A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  NLSVSVATVKANITRIFAKL  194
            +L +S ATVK+++ R  +KL
Sbjct  180  DLFISPATVKTHLNRAMTKL  199

212) SAV_931 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (505),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 93/224 (42%), Positives = 152/224 (68%), Gaps = 5/224 (2%)

Query  12   VRVLIADDQALLRGSLRVLVDTEPGLVATSEAATGTEAVRLARQDPPDVVLMDVRMPEMD  71
            + V++ DDQA++R++LR +++ ++G+   +EAA G  A  + R   PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  72   GIEATRQICGSPETADVKVLILTMFDLDEYVYAALRAGASGFLLKDTPPSELLAAVRVIA  131
            G+ AT  + + P+   V++L+LT FD DE V AALRAGA GFL K + +  L+AAV  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  132  AGEALLAPAVTRRLIAEFVHRPEPSRP---LRRTLDGVTEREREVLTLIACGLSNTEIAE  188
             G++ L+++ ++ +++++ +R  ++     + RT   +T+RE +V+   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  189  RLYLGIATVKTHVSHLLTKLATRDRAQLVIVAYESGLVTVARPP  232
             L+++ ATVKTH+++ +TKL +RDR+QLV +A+ SGLV  A  P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

213) B005_3671 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 108/222 (49%), Positives = 155/222 (70%), Gaps = 6/222 (2%)

Query  3    IRVVLADDQALVRGGFRVLIDAAPDIevvgeasegaeavalvRETGCDVILMDIRMPGTD  62
            I VVL DDQA++R+G+R +++ A +I V+GEA++G  A A++R +  DV+LMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLTATREITEDPTLAGVRVVILTTFEIDEYVYQALRAGASGFLGKGVEPPVLVAGIRAVV  122
            G+ AT  +  DP L +VR+++LTTF+ DE V  ALRAGA GFL+K+ ++  L+A++ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDALLSPEATKGLI---RRFLESPTPVVSAAHPGVAELTARERELTVLVAEGLSNAEIA  179
            +GD+ LS+ A+K ++   RR   S+T V   A+   A LT RE ++ +  A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSIA  178

Query  180  DRLFLSPLTVKTHVNRAMTKLGSRDRAQLVVAAYRYGLAAPP  221
              LF+SP TVKTH+NRAMTKL +RDR+QLV  A+R GL   +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

214) O3I_021450 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 100/222 (46%), Positives = 154/222 (70%), Gaps = 5/222 (2%)

Query  9    IRVLIADDEALVRAGFRVLVESAPDLSVLGEAGNGGEAVRLARQLRPDVVLMDIRMPIMD  68
            I V++ DD+A++RAG+R ++E A ++ V+GEA++G  A  + R  RPDVVLMD+RMPI+D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GLEAMRHLAADAD--GPRVLIVTTFDQDEHVFQALRSGASGFLLKDSPPEQLLHAIRVVA  126
            G+ A   L AD+D  + R+L++TTFD DE+V+ ALR+GA GFL K + +E L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  AGDALLTPSITRRMISAFAR--RPAALTALPDGPAALTGREREVLEHVAAGRSNAEIAAT  184
             GD+ L+++ ++ ++S + R  R+A+   L    A+LT RE +V+   A G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  LHLSVATVKTHVGRLLAKLSVRDRAQLVVLAYESGIVTPGNR  226
            L +S ATVKTH+ R ++KL  RDR+QLV +A+ SG+V  +++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

215) Jden_1873 in NC_013174


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (503),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 100/228 (44%), Positives = 154/228 (68%), Gaps = 9/228 (3%)

Query  7    IKVAIVDDQQLLRAGFSMVIGSQPDLTVVAEAGDGRSALDTLRNLDVDVVLMDIRMPELD  66
            I V +VDDQ ++RAG+  ++  ++++ V++EA+DGRSA+  +R    DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GLAATAQLVEHWTRTRPD-TAPRIIILTTFDLDEYALEAIRAGASGFLLKDAPPEEMLNA  125
            G++ATA L     R+ PD  A RI++LTTFD DE  L A+RAGA GFL K A +E ++ A
Sbjct  61   GVGATAAL-----RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAA  115

Query  126  IRTVYSGDAVIAPSTTKRLLGRMITPLPTETLESSPQASTIASLTDRERDVMLLIAKGKS  185
            + +V  GD+ ++++++K +++ +     + T       +  A+LT+RE DV+L  A+G  
Sbjct  116  VEAVAKGDTSLSAGAAKTVVSDLRRRGRSAT--DVELIARTATLTHRETDVVLGAARGLD  173

Query  186  NTEIARELFVAEATVKTHVGRILQKFGARDRVQIVVAAYENGLVRPGE  233
            N  IAR+LF++ ATVKTH+ R + K+ ARDR Q+V  A+ +GLV  +E
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

216) SC1A6.11 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (503),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 150/218 (69%), Gaps = 8/218 (3%)

Query  7    VALVDDQALMRAGFRALLdaeegvevvgeaadgeqgvaLVRAQVPDVALVDVQMPVMSGI  66
            V LVDDQA++RAG+R++L+      +   A +      ++R+  PDV L+D++MP++ G+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFA-VIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATRRIAADPALAAVRVVILTNYGLDEYVFEALRAGASGFLLKDTEPADLLQAIDVVAHG  126
             AT  + ADP L AVR+++LT ++ DE V+ ALRAGA GFL K +++  L+ A++ VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  127  EALLSPSVTRTLIGEFVARPPDRSTA-----PGLDALTRREREVTALAARGLSNEEIAAH  181
            ++ LS++ ++T+++++  R  +RS++     +   +LT+RE +V   AARGL N  IA +
Sbjct  123  DTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  MVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLVA  219
            + ISP T KTH++RAMTKL ARDR+QLV +A+ SGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

217) SCATT_p11860 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 150/217 (70%), Gaps = 3/217 (1%)

Query  8    IRVLVADDQILIRAGVAALIRATPGMDVVGEAADGDEAVRLAQAHHPDVVLMDIRMPVLD  67
            I V++ DDQ +IRAG+ +++   +G+ V+GEAADG  A  + ++ +PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GVEATRRLLADDAPHRPHVLVLTTFDLDEYVYSALKAGADGFLLKDIPPQRLLSAVRTVA  127
            GV AT  L AD   +  ++LVLTTFD DE V +AL+AGADGFL K   ++ L++AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  EGNTLLDPHITRRLV-EAHTRPLPPPAVH-SPTLAPLTARESEVLSLVAKGLTNAEIADR  185
             G+T L +  ++ +V + + R  ++  V+  +  A LT RE++V+   A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  LMMSESTVKTHLNRTMTKLDLSSRAQAVVIAYETGLV  222
            L +S +TVKTHLNR+MTKL+   R+Q V IA+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

218) yxjL in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 150/217 (70%), Gaps = 3/217 (1%)

Query  8    IRVLVADDQILIRAGVAALIRATPGMDVVGEAADGDEAVRLAQAHHPDVVLMDIRMPVLD  67
            I V++ DDQ +IRAG+ +++   +G+ V+GEAADG  A  + ++ +PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GVEATRRLLADDAPHRPHVLVLTTFDLDEYVYSALKAGADGFLLKDIPPQRLLSAVRTVA  127
            GV AT  L AD   +  ++LVLTTFD DE V +AL+AGADGFL K   ++ L++AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  EGNTLLDPHITRRLV-EAHTRPLPPPAVH-SPTLAPLTARESEVLSLVAKGLTNAEIADR  185
             G+T L +  ++ +V + + R  ++  V+  +  A LT RE++V+   A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  LMMSESTVKTHLNRTMTKLDLSSRAQAVVIAYETGLV  222
            L +S +TVKTHLNR+MTKL+   R+Q V IA+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

219) SAV_1464 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (503),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 101/218 (47%), Positives = 156/218 (72%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQSLVRAGFKALLDAQPDIDVageaadgeeaLRKVRELRPDVVLMDIRMPFL  60
            MI V+L DDQ+++RAG++++L+ +++I V GEAADG  A+  +R  RPDVVLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRRITDDADLGHVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPDELLRAVRAV  120
            DG++AT  +  D+DL  V++++LTTF+ DE V+ A+R+GA GFL K ++++ L+ AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VQGDALLSPGVTRRLIse---faarskapaaadslaGLTEREREVMALVGFGLSNDEIGR  177
             +GD+ LS+G ++ ++S+    +  +         A LT+RE +V+   + GL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV  215
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

220) PFREUD_15220 in NC_014215


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (503),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 101/224 (46%), Positives = 153/224 (69%), Gaps = 13/224 (5%)

Query  1    MIRVLLADDQTMVRTGFEMILGVENDIEVVGQAADGRQAVSAAARLHPDVVLMDVQMPTM  60
            MI V+L DDQ+M+R+G+  IL  + +I V+G+AADGR A +     +PDVVLMD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAAT---REIVAAETARVIVLTTFDRDDYLFDALGAGASGFILKNSDPTELVAAVRAV  117
            DG++AT   R     ++ R++VLTTFD D+ ++ AL AGA GF+ K++D+  L+AAV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAEL----ARLTDREVEVLRALARGLSN  173
            A+GD+ LS++ +  V+  +      R   +++D EL    A LT+RE +V+ + ARGL N
Sbjct  120  AKGDTSLSAGAAKTVVSDL-----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  174  AEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQHGLVS  217
              IA +LF+S ATVKTH++  ++KL  RDR Q V+ A++ GLV+
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

221) B737_0112 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 3/219 (1%)

Query  1    MIRVLLADDQVLVRAGFRVLLETEDGFEVVGEAGDGEQAVAGAIEHHPDIVVMDVRMPGV  60
            MI V+L DDQ ++RAG+R +LE + G+ V+GEA+DG  A A     +PD+V+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITANPDLAGTKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLRALRVV  120
            DG+ AT  + A+PDL + ++LVLTTFD DE V  ALRAGA GFL K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ANGEALLAPTVTRRLIQEF--VGRPENRRIDTSAVREITDREREVLGLVAGGMSNDEIAA  178
            A+G++ L++  ++ ++ ++   GR+       +    +T+RE +V+   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVT  217
            +L IS AT +TH++R MTK+ ARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

222) RAM_00575 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 3/219 (1%)

Query  1    MIRVLLADDQVLVRAGFRVLLETEDGFEVVGEAGDGEQAVAGAIEHHPDIVVMDVRMPGV  60
            MI V+L DDQ ++RAG+R +LE + G+ V+GEA+DG  A A     +PD+V+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITANPDLAGTKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLRALRVV  120
            DG+ AT  + A+PDL + ++LVLTTFD DE V  ALRAGA GFL K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ANGEALLAPTVTRRLIQEF--VGRPENRRIDTSAVREITDREREVLGLVAGGMSNDEIAA  178
            A+G++ L++  ++ ++ ++   GR+       +    +T+RE +V+   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVT  217
            +L IS AT +TH++R MTK+ ARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

223) AMES_0111 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 3/219 (1%)

Query  1    MIRVLLADDQVLVRAGFRVLLETEDGFEVVGEAGDGEQAVAGAIEHHPDIVVMDVRMPGV  60
            MI V+L DDQ ++RAG+R +LE + G+ V+GEA+DG  A A     +PD+V+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITANPDLAGTKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLRALRVV  120
            DG+ AT  + A+PDL + ++LVLTTFD DE V  ALRAGA GFL K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ANGEALLAPTVTRRLIQEF--VGRPENRRIDTSAVREITDREREVLGLVAGGMSNDEIAA  178
            A+G++ L++  ++ ++ ++   GR+       +    +T+RE +V+   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVT  217
            +L IS AT +TH++R MTK+ ARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

224) AMED_0114 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 3/219 (1%)

Query  1    MIRVLLADDQVLVRAGFRVLLETEDGFEVVGEAGDGEQAVAGAIEHHPDIVVMDVRMPGV  60
            MI V+L DDQ ++RAG+R +LE + G+ V+GEA+DG  A A     +PD+V+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRITANPDLAGTKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLRALRVV  120
            DG+ AT  + A+PDL + ++LVLTTFD DE V  ALRAGA GFL K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ANGEALLAPTVTRRLIQEF--VGRPENRRIDTSAVREITDREREVLGLVAGGMSNDEIAA  178
            A+G++ L++  ++ ++ ++   GR+       +    +T+RE +V+   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVT  217
            +L IS AT +TH++R MTK+ ARDR+QLV +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

225) HMPREF9154_0505 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (503),  Expect = 6e-34, Method: Compositional matrix adjust.
 Identities = 95/224 (43%), Positives = 150/224 (67%), Gaps = 10/224 (4%)

Query  1    MIRVLLVDDQPLIRTGFKTILETEPGIEVAGEAGDGTRGVELALELRPDVVCMDVQMPRM  60
            MI V+LVDDQ++IR+G++ ILE ++GI V GEA+DG  +  +    RPDVV MD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIEATRELTSRG--CGSAVLILTTFDRDDFLFETLQAGASGFLLKTAEAEKLIEAVQIL  118
            +G+ AT  L +     +  +L+LTTFD D+ ++ +L+AGA GFL K+A++E LI AV+ +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  GRGEGLLSPQVTRRVIERFTAPRQEPHCPGRVA----AGVLTEREHDTLLHLARGLSNAE  174
            ++G+  LS+  ++ V+  +   R+  + +  V     ++ LT+RE D +L  ARGL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IAAEMFVSPETVKTHVSNILTKLGLRDRINAVIWAYENGLVPRS  218
            IA ++F+SP TVKTH++  +TKL  RDR + V  A+ +GLV R+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

226) Anacy_4188 in NC_019771


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  137 bits (502),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 141/207 (69%), Gaps = 4/207 (1%)

Query  4    MIRVLLVDDQGLIRQGLRALLELETDLEIVGEAENGEVAINLVAQLQPDVVLMDIRMPIM  63
            MI V+LVDDQ++IR GLR++LE ++++ ++GEA +G  A+ ++   +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGVAATKEIQKQFPLT--KILVLTTFDDDEYVKAALQNGAMGYLLKDTPSEELAVAIRAV  121
            DGV+AT  ++ +  L   +ILVLTTFD+DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  DKGYSQLGPGIVKKLVTQFLANAPISSS-SVPPSLAELTPREKEVLQLIATGASNREIAQ  180
             KG + L++G  K +V+++   +  ++   + +  A LT RE +V+   A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  ELYISEGTVKNHVTNILNRLNLRDRTQ  207
            +L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

227) Namu_4067 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (498),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 107/216 (50%), Positives = 155/216 (72%), Gaps = 7/216 (3%)

Query  8    IRVALVDDQALFRAGIRMVVDSQPDLQVVGEAADGRQGVDMVRASRPDVVLMDIRMPVLD  67
            I V LVDDQA++RAG+R +++ +++++V+GEAADGR +  ++R+SRPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GLAATAELLADPD--PPRVVMLTTFDLDEAAARAIRQGASGFLLKDADPEFLLAAIRTVH  125
            G++ATA L ADPD  + R+++LTTFD DE    A+R GA GFL K AD+E L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  agsaviaaaaTR----DLfsrfaasapapvpaafaELTQREREIFALAARGLSNAEIAAR  181
             G + ++A+A++    DL  R  +++   + A  A LT+RE ++   AARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  EFLSEATVKTHISRILGKLALRDRVQLVVFAYEHGL  217
             F+S ATVKTH++R + KL  RDR QLV +A+  GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

228) Krad_1998 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (498),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 105/224 (47%), Positives = 155/224 (70%), Gaps = 13/224 (5%)

Query  1    MIRVLLVDDHALIRVGFRLVLESAGDIEVVGEAGDGRTALEQAAALRPDVVLMDVRMPNL  60
            MI V+LVDD+A+IR G+R +LE AG I V+GEA+DGR+A+    + RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIDATARLVEARPE---ARVLILTTFDLDEYAFAALRAGASGFLLKDVAPVDLIGAVRT  117
            +G++ATA L  A P+    R+L+LTTFD DE  +AALRAGA GFL K   +  LI+AV +
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAGGEAVVSPRITRRMLELFAHRLPESGEVPRSDAVHPRLADLTPRELEVLRHIAGARS-  176
            VA G++ +S+  ++ ++  + +R   + +V     + +R A LT RE +V+  +++AR+ 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDV----ELIARTATLTHRETDVV--LGAARGL  172

Query  177  -NAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLAYETGL  219
             N  IA +LF+S ATVKTH+ R ++KL  RDR + V +A+ +GL
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

229) BN6_31720 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 103/222 (47%), Positives = 160/222 (73%), Gaps = 11/222 (4%)

Query  1    MIDVVVVDDQALLRGSFRVLVDSAPDLRvvgeagdgaaavsvvRETSPQVVLMDVRMPGM  60
            MIDVV+VDDQA++R+++R +++ A ++RV+GEA+DG +A +V+R + P+VVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATREL---SAFSSARVLILTTFDLDEYVYSALRAGASGFLLKDTPPAELLAAIRVV  117
            DG++AT  L   + +++ R+L+LTTFD DE V +ALRAGA GFL K + +  L+AA+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ADGDGLLSPSVTRRLIAEFARLPERRTV------RLTGVTDREREVLALIARGLSNTEIT  171
            A GD  LS++ ++ +++++ R   R +       R + +T+RE +V+   ARGL N  I+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  172  RELHLSVGTVKTHIGRLLHKLQARDRAQLVIAAYESGLVAPA  213
            R+L +S +TVKTH+ R + KL+ARDR+QLV  A+ SGLV  A
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

230) Caci_7658 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (498),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 95/210 (46%), Positives = 142/210 (68%), Gaps = 9/210 (4%)

Query  1    MIRILLVDDESLVRAGLRTILESAEDLRVVAEAEDGSQVVDALAAHRPDVVLMDVRMPRV  60
            MI ++LVDD++++RAGLR ILE A ++RV++EA DG      + + RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEALRRVQATPD--PPPVVMLTTFDLDAYIFEALRRGATGFLLKDTPPRDLISAMRVV  118
            DG+ A   ++A PD  +  +++LTTFD D  ++ ALR GA GFL K + +  LI+A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGDAMLSPPVTKRLLDHYTGLRVADRAEQAVKLL---AELTPRERDVLAELARGLSNAQ  175
            A+GD+ LS+  +K ++   ++LR  +R+   V L+   A LT RE DV+   ARGL N  
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  176  IGKSLFLSEATVKAHVSRVMAKLGVANRVQ  205
            I++ LF+S ATVK+H++R M+KL   +R Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

231) Celf_3516 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 143/219 (66%), Gaps = 8/219 (3%)

Query  1    MTRVVVADDQPVVLQGFAAILGSVPDLDVVGTAPDGRALVDLVARTAPDVAVVDVRMPVL  60
            M  VV+ DDQ+++  G+ +IL   +++ V+G A+DGR+   ++  + PDV ++D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAAT--VRVVAEHPGTRVLILTTFDLDEYVYDALRAGASGFLLKDVTAERLVDAVRLV  118
            DG++AT  +R  ++  + R+L+LTTFD DE V  ALRAGA GFL K   +E L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGSMLLGANVTRRLVEDFARRGRVPS-----TTLDALTPREHDVALAVARGLSNGEIAA  173
            A G   L+A  ++ +V D+ RRGR ++     +   +LT RE DV L+ ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  ELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEAGLLH  212
            +LFI+ ATVKTH++  + KL  RDR QLV     +GL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

232) SAV_4535 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 97/222 (44%), Positives = 145/222 (66%), Gaps = 4/222 (1%)

Query  6    IRVLIADDQMMVRQGFTVLLNTQPDIEVVGQAVDGLDAIAKVAELAPDVVLMDIRMPELG  65
            I V++ DDQ M+R G+  +L+ +++I V+G+A DG  A+A +    PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIQATG--RIAVDFPQVKVLVLTTFDLDEHVYDALRAGASGFLLKDASADQLAEAVRVVA  123
            G+ AT+  R   D+  V++LVLTTFD DE+V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDALLAPGITRRLIAEFSRLD-TTPRAPLKVRVGELTERETEVLALIAQGMSNAEIADR  182
             GD+ L++G ++ +++++ R + ++    L  R + LT+RET+V+   A+G+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLVRPAGY  224
            L ++  TVKTH+ R + KL  RDR Q   +A+ SGLV  A  
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

233) Franean1_7117 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (498),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 156/219 (72%), Gaps = 9/219 (4%)

Query  1    MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPST  60
            MI ++L DDQ+++R+++  +++ A+ + V+GEA+ G  A+++ R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRQIVADDGASGSRVLILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTI  120
            DG+ AT  + AD + ++ R+L+LTTF+ D +VL +LRAGA GFL+K + +++L+ A+ ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEALLSPGATRAVIT----RALSHPDAPAPERLASLTAREREVLRLIAAGRS--NQEI  174
            A G++ LS+GA+++V++    R+ S  D     R A+LT RE +V  +++A+R+  N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNVSI  177

Query  175  ADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGL  213
            A +L +SP T KTH+ R ++K+ ARDR +LV  A+ +GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

234) PACID_01460 in NC_019395


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 152/222 (69%), Gaps = 12/222 (5%)

Query  5    IRVLLVDDQSLVRSGFRMLIEAEDGMEVVGEASNGAEALDVLRRIPVDVALMDIRMPVMD  64
            I V+LVDDQ+++R+G+R ++E + G+ V+GEA++G  A+ V+R    DV LMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRIAASP-LDT-KVMILTTFDLDEYVYAGLKAGASGFLLKDARPAELLSAIRNVA  122
            GV AT  + A P L++ ++++LTTFD DE V A+L+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGEAVVAPSATKRLLEHVVPTLPNNPRESDE-----RLSVLTDREREVLVEIAKGATNSE  177
             G++ ++++A+K     VV+ L    R + +     R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAANLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLVS  219
            IA +L+++ +TVKTH+ R ++KL+ RDR  LV +A   GLV+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

235) Svir_26840 in NC_013159


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (501),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 150/218 (69%), Gaps = 8/218 (3%)

Query  23   VVLADDQDLVRAGFRVILSSDDGIEVVGEAGDGWEAVEVATRERADVVLMDVQMPKLDGL  82
            VVL DDQ ++RAG+R IL  D GI V+GEA+DG+ A  V    R+DVVLMD++MP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  83   EATRRLLGPAGAD-HPTKVIILTTFDREDYLFEALRAGASGFLLKNASPEDLIESVRIVA  141
             AT  L   A++D ++ ++++LTTFD ++ ++ ALRAGA GFL K+A +E LI +V  VA
Sbjct  63   GATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  142  RGDALLSPEVTRRVIA----RFSAPAVTGPTRRPSELTDREFEVLSLLAKGASNAEIARQ  197
            +GD+ LS+  ++ V++    R  +++      R + LT+RE +V+   A+G  N  IAR+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  198  LVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIVT  235
            L ++ +TVKTH++R +TKL+ RDR + V +A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

236) Nos7524_3973 in NC_019684


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (501),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 140/207 (68%), Gaps = 5/207 (2%)

Query  1    MITVLLVDDQSLIRQGLKALLELEPDLEIIGEAENGQMALELIAQLSPDVVLMDIRMPIM  60
            MI V+LVDDQ++IR GL+++LE ++++ +IGEA +G+ A+ +I    PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATKEIQKS--FSWVKVLVLTTFDDDEYVKAAVQHGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  ++    ++ V++LVLTTFD+DE V AA++ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  QKGYTQLGPGIVKKLLTQFQNMPPQTSPVP--PALAELTPREKEVLQLIASGASNREISQ  176
             KG T L++G  K ++++++     ++ V   +  A LT RE +V+   A G  N  I++
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  KLYISEGTVKNHVTNILNRLSLRDRTQ  203
             L+IS +TVK H+   + +L  RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

237) ACPL_5273 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (501),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 143/219 (66%), Gaps = 8/219 (3%)

Query  1    MIGVLIVDDDALVRAGLRAILGAQPGITVTGEAADGAEVVPAALRRRPDVVLMDVRMPHL  60
            MI+V++VDD+A++RAGLR+IL  ++GI V GEAADG    +     RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIQATRLLLDRFPVDAPRVLVVTTFANDEYVYTALQAGASGFLLKRARPEQIVEAVRVV  120
            DG+ AT  L     ++A R+LV+TTF  DE V +AL+AGA GFL K A +E ++ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDSLLFPAAIKSLAAAYAR-----PDGGL--RDAGLTGREAEVLTLMADGLSNAEIAT  173
            A+GD+ L ++A K++ +   R      D  L  R A LT RE++V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  RLFLGVETVKTHVGNILAKLGVRDRTQAVVTAYKSGFIT  212
             LF++  TVKTH+   ++KL  RDR Q V  A++SG++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

238) AORI_0014 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (500),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 107/220 (49%), Positives = 164/220 (75%), Gaps = 8/220 (3%)

Query  3    VIRVVLADDQLLVRSGFAALLRAETGITvvgeaddgeaavavvaetvpdvvLMDVRMPGL  62
            +I VVL DDQ ++R+G+ ++L  ++GI V+GEA DG +A AV+  + PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  63   DGIEATRRIVADERLSEVRVVMLTTFDLDEYVFDALRAGASGFLLKHTAPADLLQAVRVV  122
            DG+ AT  + AD  L+ VR+++LTTFD DE V+ ALRAGA GFL K + +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGDALLSPSVTRRLIAEFTARPSAS-----LPRADGSAFTEREHEVVQRVAQGMSNEEI  177
            A GD+ LS++ ++ +++++  R  ++     ++R+  +++T+RE +VV   A+G+ N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  178  AREFFISAATVRTHVSRAMSKVHARDRAQLVVFAYRSGLV  217
            AR++FIS+ATV+TH++RAM+K+HARDR+QLV +A+RSGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

239) Ccur_01320 in NC_013170


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (501),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 93/210 (45%), Positives = 142/210 (68%), Gaps = 7/210 (3%)

Query  55   RNGFKLILSSYDHVRVVGEASNGIEAYEQSLALRPQVVLMDIRMPVEDGIAATRKIVGDT  114
            R G++ IL   + +RV+GEA++G  A+    + RP+VVLMD+RMP+ DG++AT  + +D 
Sbjct  14   RAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  115  ALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAEPDDIVRAVRTVAAGDALIQPSITR  174
             L   R+LVLTTFD DE V  AL+AGA GF+ K A+++ ++ AV +VA GD+ + ++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  175  RLIETFVSSRPRTSAAAGGLVD----LTDREREILRFVARGMSNEEIADDLVISPATVKT  230
             ++  +   R R+++    L+     LT+RE +++   ARG+ N  IA DL ISPATVKT
Sbjct  133  TVVSDL-RRRGRSATDV-ELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  231  HLARIMGKLDAHDRAQLVVAAYESGLVQPG  260
            HL R M KL+A+DR+QLV  A+ SGLV+ +
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

240) Achl_3912 in NC_011886


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (500),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 148/219 (68%), Gaps = 5/219 (2%)

Query  7    ITVLLVDDQPLLRMGFRLILEGEDDLHIVGEASDGAEAVKLVRNLTPDVVLMDVRMPVLD  66
            I V+LVDDQ+++R G+R ILE + +++++GEA+DG  A  ++R   PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GIEATRAITAEG--SPARIIILTTFDVDEYAFAGLQAGASAFLLKDVAPSELIQAVRVVA  124
            G+ AT A+ A+   ++ RI++LTTFD DE  +A+L+AGA +FL K   +  LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGDAVVAPRVTQRLLETYVRGaaapapaaqapdpLLGDLTPRETEMLEAMAEGLSNAEIA  184
             GD+ +++  ++ ++    R + +++     +    + LT RET+++ + A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSIA  178

Query  185  HRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGLV  223
            +  F+S ATVKTH+ R +TKLH RDR Q V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

241) RSal33209_0854 in NC_010168


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  136 bits (500),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 152/222 (69%), Gaps = 7/222 (3%)

Query  3    ISVVLADDQAMVRAGFAALLNSQTDIEVLGQAGNGAEAVSLCAKLHPDVALLDVRMPELN  62
            I VVL DDQAM+RAG+ ++L+ +++I V+G+A++G  A ++    +PDV L+D+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAAKLILAG--WYYTKILMLTTFDIDDYVYDALSLGASGFLLKDALADELVSAVRIVA  120
            G+ A+  + A+      +IL+LTTFD D+ V  AL  GA GFL K A ++ L++AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGEALLAPSVTKRLIENFAKSRPRSAAN---KTRLNNLTDREREVLTLVGRGLSNQEIAA  177
             G++ L+++ +K ++ ++ + R RSA++    +R   LT+RE +V+   +RGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLVEPAN  219
             LFI+  TVKTH+++ +TKL+ RDR Q V +A+ +GLV+ A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

242) Krad_2599 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (497),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 99/215 (47%), Positives = 147/215 (69%), Gaps = 6/215 (2%)

Query  1    MCDDQAMIRAGFVTIIDAQADLEVVGECGDGRAAVDLAHELRPDVVVMDVRMPILDGIGA  60
            + DDQAMIRAG+  I++ +A++ V+GE +DGR+A  + +  RPDVV+MD+RMPILDG+GA
Sbjct  6    LVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGA  64

Query  61   TRLL-AGPDVEAPTKVLIVTTFNLDEYVYEALRAGASGFLLKDARPAQLLQGIRTVAAGT  119
            T  L A+PD++A  ++L++TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA G 
Sbjct  65   TAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  120  SLLAPEVTRQLVGRYASRIRPPQRAQ---EGSALTPRELQVLRLIADGLSNVEIAATLSL  176
            + L++  ++ +V+    R R++   +     ++LT RE +V+   A GL NV IA  L +
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFI  183

Query  177  SPETVKTYVSRLLTKLDLRDRVQAVVYAYRHGLVT  211
            SP TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  184  SPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

243) SGR_6998 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (497),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 96/223 (44%), Positives = 145/223 (66%), Gaps = 9/223 (4%)

Query  3    IRVMIADDHAMVREAFSVLLNAQPGIEVITTAVDGLEAVAKARELHPDVIVMDIRMPGLN  62
            I V++ DD+AM+R ++  +L+ ++GI VI  A DG  A A  R  +PDV++MD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIDATREITRQTDLPT-KILVLTTFNLDEYVYEALRAGASGFLLKNASGVELAEAVRIVA  121
            G++AT  +  + DL + +ILVLTTF+ DE V  ALRAGA GFL K+A +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGEALLSPEITKRLIAEFSRLSTSTKRPTQV----RIDELTHRETEVLALVAQGLSNAEI  177
             G++ LS+  +K +++++ R     + +T+V    R   LTHRET+V+   A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  178  AGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETGLVTPG  220
            A +L ++  TVKTH+ R + KL+ RDR Q   +A+ +GLV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

244) Bcav_4002 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 109/217 (51%), Positives = 159/217 (74%), Gaps = 3/217 (1%)

Query  3    IRAVVVDDQALVRSGLRALLERAEDIEVAGEADDGASGVRLVRELRPDVVLMDIRMPGVD  62
            I  V+VDDQA++R+GLR++LE   +I V GEA DG S+  ++R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRIVASPELRDVRVIVLTTFDDDELVLGAIRAGAAAFLLKDASPEdlraavrvva  122
            G+ AT  + A P+L  VR++VLTTFD+DE VL+A+RAGA +FL K A +E L AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdallapavtrtvlar--vaastGVDADATARLDRITDREREVLAAVARGLSNDEIAGE  180
             GD+ L+++ ++TV++     + ++ D +  AR   +T+RE +V+ + ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFLSPATARTYVSRLLTKLDARDRAQLVVLAYEAGLV  217
            LF+SPAT +T ++R +TKL+ARDR+QLV +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

245) AMIS_24030 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 95/204 (47%), Positives = 141/204 (70%), Gaps = 5/204 (2%)

Query  19   AGLRAVLSSDSTISVVGEAADGREAVTFGQELMPDVVLMDVRMPHEDGIAATRTL--SAT  76
            AGLR++L  D+ I V+GEAADGR A +  +   PDVVLMD+RMP  DG++AT +L   + 
Sbjct  15   AGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPD  73

Query  77   VPATRVLILTTFEDDDYVFGALNAGASGFLLKRTRPEQLIEAIHTVAAGESLLSPAITRT  136
            + A R+L+LTTF++D+ V++AL AGA GFL K + +E LI A+++VA G++ LS++ ++T
Sbjct  74   LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKT  133

Query  137  VID--RmavaappdpamaQRLRELTARERDVLERVARGLSNTEIASDLFVEESTVKTHVK  194
            V+   R    ++ D  +  R   LT RE DV+   ARGL N  IA DLF+  +TVKTH++
Sbjct  134  VVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLN  193

Query  195  RILAKMNLRDRVQAVIVAYETGLV  218
            R ++K++ RDR Q V +A+ +GLV
Sbjct  194  RAMTKLHARDRGQLVSIAFRSGLV  217

246) O5Y_14380 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 156/220 (71%), Gaps = 5/220 (2%)

Query  3    ITVLLVDDQELMRMGLNMVLEAHEDISVIGEAGDGaaavaaavaLKPDVVLMDVRMPIVD  62
            I V+LVDDQ ++R GL  +LE + +I VIGEA+DG +A A   + +PDVVLMD+RMPI+D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVKATEQILA-SGIES-RVLVMTTFDLDEHALGALRAGASGFLLKDTPPEDLVSAIRSVA  120
            GV AT  + A +++++ R+LV+TTFD DE+ L+ALRAGA GFL K + +E L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTRRLLSRFIVDGPAPRRDPVV--LDVLTEREREVLGHVATGLSNIEIAQQ  178
             GD+ +S+  ++ ++S +   G ++    ++     LT+RE +V+   A GL N+ IA++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGLVTPG  218
            L++S +T+K+H+ R +TKL+ RDR Q V +A+ +GLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

247) RER_31330 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 156/220 (71%), Gaps = 5/220 (2%)

Query  3    ITVLLVDDQELMRMGLNMVLEAHEDISVIGEAGDGaaavaaavaLKPDVVLMDVRMPIVD  62
            I V+LVDDQ ++R GL  +LE + +I VIGEA+DG +A A   + +PDVVLMD+RMPI+D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVKATEQILA-SGIES-RVLVMTTFDLDEHALGALRAGASGFLLKDTPPEDLVSAIRSVA  120
            GV AT  + A +++++ R+LV+TTFD DE+ L+ALRAGA GFL K + +E L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTRRLLSRFIVDGPAPRRDPVV--LDVLTEREREVLGHVATGLSNIEIAQQ  178
             GD+ +S+  ++ ++S +   G ++    ++     LT+RE +V+   A GL N+ IA++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGLVTPG  218
            L++S +T+K+H+ R +TKL+ RDR Q V +A+ +GLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

248) PAZ_c21160 in NC_017534


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

249) TIB1ST10_10315 in NC_017535


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

250) PAC1_10345 in NC_018707


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

251) PPA2028 in NC_006085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

252) TIA2EST22_09925 in NC_016512


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

253) TIA2EST36_09905 in NC_016511


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

254) TIA2EST2_09860 in NC_016516


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G +A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

255) XNR_4521 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (496),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 155/223 (70%), Gaps = 4/223 (1%)

Query  3    IRVIIVDDQGMVRAGFAALLSAQSDIDVVGEAADGRSGIEVSRKTHPDIVLMDVRMPEMD  62
            I V++VDDQ+M+RAG+ ++L  +++I V+GEAADGRS++ V R ++PD+VLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLTATRELLSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFLLKDSPPASLVSAVRV  122
            G+ AT  L  ++P+  +  ++++LTTFD D+ V  AL+AGA GFL K + + SL++AV  
Sbjct  61   GVGATAAL-RADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  IHGGNALLDPAVTRRFIEDIVrrrprprrdprL-QLNGLTPRETEVLELVARGLSNLEIA  181
            +  G++ L ++ ++  + D+ RR   +     + +   LT RET+V+   ARGL N+ IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  EQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLVKPGD  224
             +L ++  TVKTH++R ++KL  RDR+Q V  A+ SGLV+ ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

256) Xcel_1633 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 101/210 (49%), Positives = 146/210 (70%), Gaps = 3/210 (1%)

Query  33   RAGFRLILERAGIEVLGEAADGAQAVEQVAALRPDVVLMDVRMPHLDGIEATRRILARAG  92
            RAG+R ILE AGI V+GEAADG  A   + + RPDVVLMD+RMP LDG+ AT  + A ++
Sbjct  14   RAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPD  73

Query  93   -TAVRVIVLTTFDLDEYVYGAIRAGASGYLLKDVSPRGLVTAVRAVADGEAMLSPAVLTR  151
              AVR++VLTTFD DE V +A+RAGA G+L K   + +L++AV AVA G++ LS++    
Sbjct  74   LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKT  133

Query  152  MLDQYV--ARPPAGVALPPAIAALTDREREVARNVARGLSNAQIAARLFLSEATVKTYVS  209
            ++ +    +R++++V L +  A+LT+RE +V    ARGL N  IA  LF+S ATVKT ++
Sbjct  134  VVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLN  193

Query  210  RLLTKLGLRDRVQIAVLAYETGLVRVGERA  239
            R +TKL  RDR Q+  +A+ +GLV  +E++
Sbjct  194  RAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

257) KSE_65720 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 101/218 (47%), Positives = 148/218 (68%), Gaps = 3/218 (1%)

Query  6    VRVLIADDQALLRAGFRLLIDSAPDLAVAGEADNGERAVELARRLRPDVVLMDVRMPGTD  65
            + V++ DDQA++RAG+R +++ A ++ V GEA +G  A  + R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLEATRRIRADPAAAGTRVLVLTTFDLDEYVYAALCGGASGFLLKDILPADLLTALRVVA  125
            G+ AT  +RADP   + R+LVLTTFD DE V AAL +GA GFL K   +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGDALLAPAVTRRLIGEF--AGRHEPPPRLARELAGLTPREREVLRLVARGLPNPAVADH  183
             GD+ L+++ ++ +++++   GR      L    A LT RE +V+   ARGL N ++A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LELSVATVKTHVRRLLAKLHAHDRAQLVVIAYETGLVT  221
            L +S ATVKTH+ R ++KLHA+DR+QLV IA+ +GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

258) AORI_4123 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 152/223 (69%), Gaps = 4/223 (1%)

Query  1    MIEVLVVDDQDLVRAGFVALLRAAPGITVVGEAADGQEAVDLAARLRPDVVLMDIRMPGT  60
            MI+V++VDDQ ++RAG+ ++L   +GI V+GEAADG+ A  +    RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGVVATERILAAERD-RPTRVLVLTTFDLDEYVYAALRAGASGFLFKDVRAERLVAAIHT  119
            +GV AT   L A+ D  + R+LVLTTFD DE V AALRAGA GFL K   +E L+AA+++
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  IAAGEQLFAPSVMRRLIEAYANRPGGPTGAP-GPELDCLTARETEVLRLVGKGMTNGGIA  178
            +A G+  ++++  + ++     R  ++T+    +    LT RET+V+   ++G+ N +IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  GELVVSESTVKTHVNRAMTKLGLSSRAQIVALAYESGLVTPGA  221
             +L +S +TVKTH+NRAMTKL    R+Q+V++A+ SGLV  + 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

259) PACID_14200 in NC_019395


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 156/220 (71%), Gaps = 7/220 (3%)

Query  3    VLLVDDQKLVRTGFRLILSVEPDIEVVGEaadgrqavdaaarLQPDLVLMDVQMPVLDGI  62
            V+LVDDQ ++R+G+R IL  +++I V+GEAADGR A       +PD+VLMD++MP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  63   AATREITADS---PVKVVVLTTFDRDDYLFDALAAGASGFMLKNADADSLVAGLRQVHEG  119
            +AT  + AD+   +V+++VLTTFD D+ ++ AL AGA GF+ K+AD++SL+A++  V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  YALLAPEVTRRVIEARLGEGATGATASD--PRLELLTPREGEVVVQVAHGLSNAEIAAAL  177
             + L++  ++ V+   L   + +AT  +  +R   LT RE +VV+  A+GL N  IA  L
Sbjct  123  DTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  178  FVSEATVKTHISNSLTKLDLRDRVQLVAFAYEAGLIRVGE  217
            F+S ATVKTH++ ++TKL+ RDR QLV++A+ +GL+  +E
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

260) SCAB_42071 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 141/217 (65%), Gaps = 4/217 (1%)

Query  6    IRVLIADDQQMVRQGFSVLLDIQPDIDVVGQAVHGLDAIDKVAELAPDVVLMDIRMPELG  65
            I V++ DDQ M+R G+  +L+ +++I V+G+A +G  A+  +    PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATR--RITTERPHIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVA  123
            G+ AT   R   +   +R+LVLTTFD DE V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDALLAPGVTRRLIAEFSRLG-TAPRAPLKERVGDLTERETEVLSLIAQGLSNAEIAQS  182
             GD+ L++G ++ +++++ R G +A    L  R + LT+RET+V+   A+GL N  IA+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV  219
            L ++  TVKTH+ R + KL  RDR Q   +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

261) Amir_2737 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 150/220 (69%), Gaps = 2/220 (0%)

Query  7    VVLVDDQALVRAGFRVILGAEPDIEVVGEAGDGERAVELVAELAPDVVLMDVQMPVLDGI  66
            VVLVDDQA++RAG+R IL  +++I V+GEA+DG  A  ++    PDVVLMD++MP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATRRILGPAPAEHPVRVVVLTTFDREDYLFEALRAGASGFLLKNASPEDLVEAIRVVAR  126
             AT   L + P  ++VR++VLTTFD ++ ++ ALRAGA GFL K+A +E L+ A+  VA+
Sbjct  63   GATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  127  GDALLSPEVTRRVLarfagpapraapatapnrpaDLTDREYEVLVHLARGSSNAEIAARL  186
            GD+ LS+  ++ V++ +   +  A+      R A LT+RE +V++  ARG  N  IA  L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  187  HLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVVAPGQ  226
             ++ +TVKTH++R ++KL  RDR + V  A+  G+V  ++
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

262) REQ_31570 in NC_014659


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 149/220 (68%), Gaps = 3/220 (1%)

Query  3    ITVFIADDQAMVRQGFGALLGAQPDISVIGDAPDGRAAVTEVKRLRPDVVLMDVRMPEMN  62
            I V + DDQAM+R G+ ++L  +++I VIG+A+DGR+A + ++  RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAAREILAAAMEPPVRVLMLTTFDIDEYVYEALGIGASGFLLKDAPAEELIRAVRVVA  122
            G++A+  + A +   +VR+L+LTTFD DE V  AL  GA GFL K A +E LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPSVTKRLIEDVTrrraaprrrd--rQLETLTPREREVLELIAAGLSNVEIAER  180
             G++ L+++ +K ++ D+ RR  ++   +   +  TLT RE +V+   A GL NV IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLVTPG  220
            LF++  TVKTH+ + ++KL  RDR+Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

263) AMIS_26860 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 146/222 (66%), Gaps = 8/222 (3%)

Query  1    MIRILIVDNQPMIRAGIHAILASQNDMSVVGEAENGRIGVERARSLRPDVVLMDVRMPEL  60
            MI +++VD+Q+MIRAG+++IL  + ++ V+GEA +GR +    R+ RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATAELLDPRRAGE-RPPRVLMLTTFDIDDYVYAALRAGASGFLLKDTEPEELIQAV  119
            DG++ATA L   R   +  + R+L+LTTFD D+ V AALRAGA GFL K +++E LI AV
Sbjct  60   DGVGATAAL---RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  120  RVIAAGEALLSPSVTRRLIENFIGSQPVTPASTVL---NILTDREREVLRLMATGSSNAE  176
              +A G++ LS++ ++ ++ ++      +    ++     LT+RE +V+   A G  N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IAATLFIAEQTTKTHVSRILNKLGLRDRVHAVVFGYENGLVT  218
            IA  LFI+  T KTH++R + KL  RDR + V +++ +GLV 
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

264) TIIST44_02915 in NC_017550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 152/222 (69%), Gaps = 12/222 (5%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAATTTDPKLVE---TLSDREREVLTCVGEGLTNA  178
              GD+ ++++A++ ++  +  R    + ++TD  L+    TL++RE +V+   + GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR----GRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
             IA  L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

265) AMIS_34790 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 148/218 (68%), Gaps = 4/218 (1%)

Query  4    VSVLLADDHALMRESFRALLDASPGFTTVGEAGTGAEAVRLAGEHRPDVVLMDVRMPEMD  63
            + V+L DD+A++R ++R++L+  +G+  +GEA+ G  A  +    RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATR--RICAELESVRVLMLTTFDLDEYVYAALRAGASGFLVKDATAAELLNGIRLVA  121
            G+ AT   R  ++L++VR+L+LTTFD DE V AALRAGA GFL K A +  L+ ++  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGEALLAPRVTRRLIAAFTgpgggspagp-pvgLDAITDREREVLELIAKGLSNTEIAEH  180
             G++ L++  ++ +++ +   G ++          ++T+RE +V+   A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LYLGVGTVKTHIGRLLSKLGARDRAQLVITAYESGLVS  218
            L+++ +TVKTH+ R ++KL ARDR+QLV  A+ SGLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

266) SFUL_3263 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 150/220 (69%), Gaps = 4/220 (1%)

Query  4    IRVLIVDDQMMVREGFSVLLNAMPGITVVGEAVDGRDAIDKVAALFPDVVLMDIRMPGMN  63
            I V++VDDQ M+R G+  +L+  +GI V+GEA DGR A+  + +  PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIDATREIVAQ--VVDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  121
            G++AT  + A+  +   ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  SGEALLAPSVTRRLITEFSKLAEAPRQPAL-ARIGDLTERETEVLVLIAQGLSNAEIASH  180
             G++ L+++ ++ +++++ + + ++ +  L AR + LT+RET+V++  A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  220
            L+++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

267) SACTE_3070 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 146/220 (67%), Gaps = 4/220 (1%)

Query  6    IRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVDGRQAVSQVAALRPDVVLMDIRMPELN  65
            I V++VDDQ M+R G+  +L+  +GI V+GEA DGR A + + + RPDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATREIVaad--adaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  123
            G+ AT  + A       ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  SGEALLAPTVTRRLITEFSKIATAPRPPAM-ARIGDLTERETEVLVLIAQGLSNQEIASH  182
             G++ L++  ++ +++++ + + ++    + AR + LT+RET+V++  A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  222
            L+++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

268) SCAB_14341 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 104/221 (48%), Positives = 159/221 (72%), Gaps = 2/221 (0%)

Query  3    IRVLLADDQALLRGMLRRLVDNTPGMevageaadgaeaveLVRAQGADVVLMDIRMPGTD  62
            I V+L DDQA++R+ LR ++++ +G+ V GEAADG  A  ++R+  +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRTITADPALGEVKVLVLTTFEIDEYVAEAVRAGARGFIGKGADPEDLLAAIETVA  122
            G+ AT ++ ADP L  V++LVLTTF+ DE V  A+RAGA GF++K+AD+E L+AA+E+VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEPMLSAAATAALMGRFQAHAPRNWAKE-TERLAELTPREREMLVLVASGLTNDDISER  181
             G+  LSA+A+ ++++ ++ ++      E   R A LT RE ++++  A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLVQPGD  222
            L +S  TVKTH+NRAMTK+   +R+QLV+IA+ SGLV+ ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

269) Strvi_7243 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 157/219 (72%), Gaps = 3/219 (1%)

Query  3    IKVLLADDQALLRSAFRVLVDSEADMEVVGEASDGAQAVEIARTRGADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ +A++ V+GEA+DG  A  + R   +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMITEDPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGAEPDellaairiaa  122
            G++AT  +  DP L  VR+++LTTF+ DE V+ +LRAGA GFL+K+A+++ L+AA+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  ageallSPVATKGLIARFLAQGDGSGDEGAYDAARLDALTVREREVLVQVGGGLSNDEIA  182
             G++ LS+ A+K +++ +  +G ++ D      AR  +LT RE +V++  + GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI--ARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV  221
              L +SP TVKTH+NRAM+KL ARDR+QLV IA+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

270) YM304_05390 in NC_020520


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 154/218 (71%), Gaps = 8/218 (3%)

Query  1    MIRVLIADDQDLVRAGFRMILDATDGIDVVGEADNGRDAVTKAQHLRPDVCLFDIRMPEL  60
            MI V++ DDQ ++RAG+R IL+ + GI V+GEA +GR A +  +  RPDV L D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAT-ALIAGPDVAEPLNVVVITTFDLDEYVYGALQAGAIGFLLKNAAPELLVAAVRA  119
            DG++AT AL A+PD+ +++ ++V+TTFD DE V +AL+AGA GFL K+A +E L+AAV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  AANGDSLISPEITTRLLDHVVAPNAPSSLSE-----SPLTDRETEVVAAVARGLSNAEVA  174
             A+GD+ +S+  +  ++ ++     +++  E     + LT+RET+VV + ARGL N  +A
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  TELHVSVSTVKAHIAAAMSKLDARNRVELVIWAYEHGL  212
             +L +S +TVK+H+  AM+KL+AR+R +LV  A+  GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

271) Elen_2822 in NC_013204


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 94/207 (46%), Positives = 142/207 (69%), Gaps = 3/207 (1%)

Query  17   RSGFKLILMSYDGIDVVGEARDGHEAVELASRLHPDVVLMDIRMPRMNGIEATRAIRDDA  76
            R+G++ IL    GI V+GEA DG+ A  +    +PDVVLMD+RMP ++G+ AT A+R D+
Sbjct  14   RAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  77   ALENVHVLILTTFDLDEYVYDALAAGASGFLLKDAEPDEIASAVRVVAQGDALIEPSITR  136
             L+ V++L+LTTFD DE V  AL AGA GFL K A+++ + +AV  VA+GD+ + ++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  137  RLIETFvaarpaslggaaavaaglrTLTDREREILALVARGFTNDEIGSELFISPATVKT  196
             ++  +   R +  +    + A   TLT+RE +++   ARG+ N  I+ +LFISPATVKT
Sbjct  133  TVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  197  HLARIMAKLDAHDRAQLVVRAYEGGLV  223
            HL R M+KL+A+DR+QLV  A+ +GLV
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLV  217

272) AORI_7243 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 142/219 (65%), Gaps = 14/219 (6%)

Query  1    MITIMLVDDHPVVREGLRGMLEAEPDLSVVGEAGSGDEAVALSRVKQPDVILMDLRMPGL  60
            MI ++LVDD++++R GLRG+LE ++++ V+GEA+ G  A A+ R  +PDV+LMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVGATRKILADR--PGQRIVVLTTYETDADILRAVEAGASGYLLKDASRAELAGAIRAA  118
            DGVGAT  + AD    + RI+VLTT++ D ++L A+ AGA G+L K A    L +A+ A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  SRGETVLAP----SVAGKLVNRVRNPT-------APPLSAREIEVLRLVARGSTNADIGR  167
            ++G+T L++    +V + L  R R++T       ++ L+ RE +V+   ARG  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  TLHISEATVKTHLLRVFGKLDVSDRTAAVTTAMRLGLLG  206
             L IS ATVKTHL R   KL+  DR   V+ A R GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

273) AORI_8006 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 152/218 (70%), Gaps = 14/218 (6%)

Query  1    MVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIRLAEELRPDVVLMDVRMPVLDGV  60
            +V+VDDQ ++R G+R +L  +A+I V+GEA+DG  A+ +    RPDVVLMD+RMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EAT---KRIVEAGTARVLVMTTFDLDEYVYSALQGGASGFLLKDTQPDHLVSALRAVASG  117
             AT   +   +  + R+LV+TTFD DE V +AL++GA GFL K ++++ L++A+ AVA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  118  DAVVSPSVTRRLLDRFVGGGGKPMRDAAELDV------LTEREREVLVLIAKGLSNLEIA  171
            D+ +S++ ++ ++  +     +  R A+++++      LT+RE +V++  A+GL N+ IA
Sbjct  123  DTSLSAGAAKTVVSDLR----RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  172  ETLFLSEATVKTHVGRILSKLDLRDRVQAVVLAYETGL  209
              LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

274) SBI_02186 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 96/223 (44%), Positives = 155/223 (70%), Gaps = 2/223 (0%)

Query  3    IRVLLADDQTLLRATFRILIDSCedmevvaeaadgaeaaaLTSAHAPDVVVMDIRMPGTD  62
            I V+L DDQ+++RA +R +++      +   A + +  A + +++ PDVV+MD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR-PDVVLMDLRMPILD  60

Query  63   GLAATSAICTDPELSATRVLILTTFETDEYVARALRAGASGFLGKDVGADELLTGIRTVA  122
            G++AT+A+ +DP+L+A R+L+LTTF+ DE V  ALRAGA GFL+K  +++ L++++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGDSLLSPVATRALITRFlaapdpeaplapsellaslTAREREVMALAAEGKSNAEIAEV  182
             GD+ LS+ A++++++ +     + + +      A+LT RE +V+  AA G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV-RPAPP  224
            LF+SP TV+TH++RAM KL ARDR+QLV IA++SGLV R+  P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

275) PAGK_1940 in NC_021085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 150/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGERAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G  A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

276) HMPREF0675_5093 in NC_014039


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 150/219 (69%), Gaps = 6/219 (2%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA DG  A+ ++    PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMTSHPE---AKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT   + ++P+    +ILVLTTFD DE V +ALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGERAATITDPKLVETLSDREREVLTCVGEGLTNAEIA  181
              GD+ ++++A++ ++  +  R+G  A+ +       TL++RE +V+   + GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  ERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV  220
              L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

277) Sros_1684 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 148/222 (67%), Gaps = 18/222 (8%)

Query  1    MLRLMIVDDHPVVREGLRGMLEADPGITVVGEAASGDEA--VVRAGELRPDVILMDLRMP  58
            M+ +++VDD++++R GLRG+LE D+GI V+GEAA G  A  V+R++  RPDV+LMDLRMP
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGS--RPDVVLMDLRMP  57

Query  59   DGDGVSATG--RILAERPESRVIVLTTYETDQDIVRAVEAGAAGYLLKDTSRADLLAAIV  116
              DGV+AT+  R  ++    R++VLTT++ D++++ A+ AGA G+L K +    L+AA+ 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  117  SAARGETVLSPSVATRLVTRMR-----------APVSESLSPREAEVLSLVARGLTNAQI  165
            + A+G+T LS++ A  +V+ +R            + + +L+ RE++V+   ARGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  166  GKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGLLTR  207
            +++LFIS +TVKTHL R   KL   DR   V+ A+  GL+ R
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

278) SCH10.18c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 100/226 (45%), Positives = 144/226 (64%), Gaps = 10/226 (4%)

Query  9    VIRVLIADDQQMVRQGFTVLLNTQPDIEVIGQAVDGLDAVAKVAELAPEVVLMDIRMPEL  68
            +I V++ DDQ M+R G+  +L+ +++I VIG+A DG  A A +    P+VVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  69   GGIEATR--RITTATPEIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVV  126
            +G+ AT   R       +R+LVLTTFD DE V  ALRAGA GFL K A ++ L  AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  AAGDALLAPGITRRLIAEFSRLDDRPRAP----LKARVGELTERETEVLALIAQGLSNAE  182
            A GD+ L++G ++ +++++ R   R R++    L AR + LT+RET+V+   A+GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  183  IAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPAGY  228
            IA+ L ++  TVKTH+ R + KL  RDR Q   +A+ SGLV  A  
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

279) Strvi_8078 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 143/217 (66%), Gaps = 2/217 (0%)

Query  5    IRVLIADDQMMVRQGFTVLLNAEPDIEVVGQAVDGADAIDQVAELAPDVVLMDIRMPGVG  64
            I V++ DDQ M+R G+  +L+ +++I V+G+A DG  A+  +    PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRL-TEPAGATVKILVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVA  123
            G+ AT  L ++P   +V+ILVLTTFD DE V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDALLAPNITKRLIGEFSRVSAAAPRGPLRDRVGDLTERETEVLTLIAQGLSNAEIAAR  183
             GD+ L++  +K +++++ R + +A    L  R + LT+RET+V+   A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYETGLV  220
            L ++  TVKTH++R + KL  RDR Q   +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

280) Kfla_0630 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 95/219 (44%), Positives = 157/219 (72%), Gaps = 3/219 (1%)

Query  1    MTRLLIVDDEALVRAGLKMILESADDLQVVaeaedgadaaaMVREHRPDVVLMDIRMPRL  60
            M  +++VDD+A++RAGL+ ILE A+ ++V++EA DG  A A++R  RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATREIQALPE--PPKVVVLTTFDLDDYVFRALQAGASGFLLKDTPPRELVQAVRVV  118
            DG++AT  ++A P+  + +++VLTTFD D+ V+ AL+AGA GFL K + +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDAMLSPAVTRRLIGHFAADQRTDRQRLAKQRLSRLTDREVEVLVAVGRGLSNADIGR  178
            A GD+ LS++ ++ +++++    R+  +     R + LT+RE +V+++ +RGL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  SLFMSEATVKAHVSRVLVKLDATNRVQVAILAHEAGLLD  217
             LF+S ATVK+H++R + KL+A +R Q+  +A  +GL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

281) PALO_00860 in NC_021064


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 97/222 (44%), Positives = 150/222 (68%), Gaps = 12/222 (5%)

Query  5    IRLLLADDQQMVRAGFRLVLDAQPDMTVVGEANTGAEAVTLVDELSPDVVLMDIRMPILD  64
            I ++L DDQ M+RAG+R +L+ ++++ V+GEA  G  A +++    PDVVLMD+RMPILD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLGATEKIMVAHPE---ARILVLTTFDLDEYVHAALRAGASGFMLKDAGPTELLAAIRAV  121
            G+GAT  +  A+P+    RILVLTTFD DE V AALRAGA GF+ K A++  L+AA+ AV
Sbjct  61   GVGATAALR-ADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  RDGDSVVAPSATRRLIERFIPRQGEGAPTMTDPKLID---SLSDREREVLTCVGEGLTNA  178
              GD+ ++++A++ ++  +  R    + + TD  LI    +L++RE +V+   + GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR----GRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAERLYLAETTVKTHIGHILSKLSLRDRVSMVITAYDAGLV  220
             IA  L+++ +TVKTH+ + ++KL  RDR  +V  A+ +GLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

282) Npun_R2420 in NC_010628


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 89/207 (43%), Positives = 138/207 (67%), Gaps = 4/207 (1%)

Query  2    MIKVLLVDDQGLIRQGLRALLELESDLEIVGEAENGEQAINLVAEFQPDVVLLDIRMPIM  61
            MI V+LVDDQ++IR GLR++LE ++++ ++GEA +G  A+ ++   +PDVVL+D+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   DGVAATKEIQKR--FSKTKILVLTTFDDDEYVSAALQNGAMGYLLKDTPSEELAVAIRAV  119
            DGV+AT  ++    ++  +ILVLTTFD+DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  YKGYTQLGPGIVKKLLTQF-SNGTPIHSTPVPSTLNELTPREKEVLRLIATGASNREIAQ  178
             KG T L++G  K +++++   G +     + +    LT RE +V+   A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELYISEGTVKNHVTNILNTLNLRDRTQ  205
            +L+IS +TVK H+   +  L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

283) Xcel_0759 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (490),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 96/205 (47%), Positives = 145/205 (71%), Gaps = 4/205 (1%)

Query  10   VALVDDDALVRAGLSLILGGDPELRIVGEAADGVAAIELVRRERPDVVLMDIRMPRLDGL  69
            V LVDD+A++RAGL  IL  D+ +R++GEAADG +A+ ++R  RPDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  70   AATQRLVAAG--TRSRIIVLTTFDADAMVLEALQAGAAGFLLKDTPPERLvaavhaaaaG  127
            +AT  L A       RI+VLTTFD+D  VL AL+AGA GFL K + +E L+AAV+A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  EPTLSPTVTASLIASVAGSD-GGRRVQAVQRLADLTEREREVAVAVGRGLSNTEIAASLY  186
            + +LS+  + ++++ +   + ++  V+ + R A LT+RE +V ++ +RGL N  IA  L+
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  187  MGVATVKTHVSRVLAKLGVENRVQV  211
            ++ ATVKTH++R ++KL   +R Q+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQL  207

284) Kfla_5761 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  134 bits (490),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 152/219 (70%), Gaps = 9/219 (4%)

Query  1    MIRVLLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEAVTLTRDLRPDVVLMDIRMPST  60
            MI V+L DDQ+++R+++  +++ A+ + V+GEA+ G  A ++ R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRQICADD--ASSKVLILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTV  118
            DG+ AT  + AD    + ++L+LTTF+ D +VL +LRAGA GFL+K + +++L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEALLSPGATRAVITRALSRPDAPPPE-----RLASLTAREREVLRLVAAGRSNQEIA  173
            A G++ LS+GA+++V++  L R + ++ +     R A+LT RE +V+   A G  N  IA
Sbjct  120  AKGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  DDLVVSPLTAKTHVARILAKLGARDRVHLVIAAYEAGLL  212
             DL +SP T KTH+ R ++KL ARDR +LV  A+ +GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

285) nfa31210 in NC_006361


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 147/218 (68%), Gaps = 7/218 (3%)

Query  3    ITVLVVDDQELMRMGLKMVLGAHPDIEVIGEAENGAVAVSRARELRPDVVLMDVRMPVVD  62
            I V++VDDQ ++R GL+ +L  +++I VIGEA +G  A +  R  RPDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVTATTRILESGD--GCKVLVMTTFDLDEHVLGALRAGASGFLLKDTPPEDLVSAVRSVA  120
            GV AT+ +    D  + ++LV+TTFD DE+VL+ALRAGA GFL K + +E L++AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTKRLLDRLIADDPAGMRDAAVL---DVLTAREREVLEQIAAGRSNAEIAA  177
             GD+ +S+  +K ++  L   + ++  D  ++     LT RE +V+   A G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT-DVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELFLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGLV  215
            +LF+S ATVKTH+ R +TKL  RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

286) Amir_0513 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 145/220 (66%), Gaps = 22/220 (10%)

Query  11   VIRVLLVDDHPVVRQGVRGMLAPATDLEVVGEAASGDEAVRLVRADPPDVVLMDLRMPGG  70
            +I V+LVDD++++R G+RG+L   +++ V+GEAA G  A  ++R+  PDVVLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  71   DGVEATARI---GALS--RVVVLTTYETDADILRAVEAGAVGYLLKDASPEDLVAAVRAA  125
            DGV ATA +     L+  R++VLTT++ D ++L A+ AGA G+L K A +E L+AAV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  126  ARGETVLAPSVA----------GR------LVRRTPALSPREVEVLRLVGRGLSNAEIGR  169
            A+G+T L+++ A          GR      L+ RT++L+ RE +V+   +RGL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  170  QLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGLLGH  209
            +LFI+ ATVKTHL R  +KL+  DR   V+ A R GL+ +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

287) RER_21420 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 97/225 (44%), Positives = 153/225 (68%), Gaps = 13/225 (5%)

Query  4    IAVALIDDQQLVRAGFRMVIDSQPDLSVVVEASDGQQALTELAARHVDVVLMDVQMPKMD  63
            I V L+DDQ ++RAG+R +++ ++++ V+ EA+DG+ A++ + + + DVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRLLADPD--APKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDAIRTVH  121
            G+ AT  L ADPD  A +++VLTTFD DE V++A+RAGA GFL K   +E L+ A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  RGDAVIEARATRRL---LQHVGPLLEGSAPESQL---PEELTPREVEVLEAMAYGLSNSE  175
            +GD+ + A A++ +   L++ G     SA + +L      LT RE +V+ + A GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGR----SATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  176  IAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLVRRAD  220
            IA  + +S +TVKTH+ R ++K H+RDR Q V +AF+ GLV RA+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

288) SCI11.34 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 148/217 (69%), Gaps = 5/217 (2%)

Query  3    IRLLIVDDQELIRTGFRLFLQTQNDLEVVGEADDGHGALAQAAALRPDVVLMDIRMPRMD  62
            I +++VDDQ +IR+G+R +L+ + ++ V+GEA DG++A+A   + RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATSRLTASD--SPPRVLILTTYDLDEYVFGALRAGASGFLLKDASRDRLLEAIRVVH  120
            GV AT+ L A    ++ R+L+LTT+D DE V++ALRAGA GFL K A  + L+ A+  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGEALLSPSITRRLIEDYATRAAPVRPREAV--LAGLTPREREILLLVARGLSNPEIAAR  178
             G++ LS++ ++ ++ D   R+ +    E +   A LT RE +++L  ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVVTEATVKSHVGSMFAKLHLRDRAQAVVFAYENAIV  215
            L ++ ATVK+H+    +KLH RDR+Q V +A+ +++V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

289) SVEN_1521 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 95/217 (44%), Positives = 149/217 (69%), Gaps = 6/217 (2%)

Query  4    VRVVLADDERMVRTALRVILDAEPDLTVVGEASTGAEAVSVVRAERPDVVLMDVRMPEID  63
            + VVL DD+ M+R++LR IL+ ++++ V+GEA+ G  A +V+R+ RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIRATEQILAGMA-EPPRIVVVTTFENDAYVYDALRVGAAGFLLKRAAAEELVSAVRLVA  122
            G+ AT  + A+   ++ RI+V+TTF+ D  V  ALR GA GFL K A +E L++AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RSDSLLYPAAVRGLAAE-HARNRPPVAPPWVAR---LTEREAEVLRLVATGLTNAEIAGR  178
            ++D+ L ++A + + ++ + R R++     +AR   LT+RE++V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  MGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV  215
            + ++PATVKTH+   ++K  ARDR Q V +A+ SG+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

290) SBI_07804 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 101/220 (46%), Positives = 158/220 (72%), Gaps = 4/220 (1%)

Query  3    IKVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVEIARDRGADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  + R+  +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRMITQDPRLEDVRVVMLTTFEVDEYVVESLRAGASGFLGKGAEPDellaairiaa  122
            G++AT  +  DP L+ VR+++LTTF+ DE V+ +LRAGA GFL+K+A+++ L+AA+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  ageallSPVATKGLIAKFLAQGGGRDGESGAYDAARLDALTGREREVLVQVAGGLSNDEI  182
             G++ LS+ A+K +++ +  +  GR +       AR  +LT RE +V++  A GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR--GRSATDVEL-IARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AARLEVSPLTVKTHVNRAMAKLGARDRAQLVVISYETGLV  222
            A  L +SP TVKTH+NRAM+KL ARDR+QLV I++ +GLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

291) BN6_71380 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 99/221 (45%), Positives = 152/221 (69%), Gaps = 8/221 (3%)

Query  1    MIRVLLADDDSLVRGGLKALLHGESDIVVVGEVSNGRDAVVSALALRPDVVVMDIRMPVR  60
            MI V+L DD++++R+GL+++L+ +++I V+GE ++GR A     + RPDVV+MD+RMP+ 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRELMSAT--PRPRVLVLTTFDLDEVVDDAISAGADGFLLKRASPEELVAGIRTV  118
            DGV+AT  L +       R+LVLTTFD DE V  A+ AGADGFL K A +E L+A++ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGDAVISSSVTRRLFEA--HALRTPAD---RARTVRLTDREADVLRAMAEGLSNPEIAR  173
            A GD+ +S++ ++ +     +  R+++D    ART  LT+RE+DV+ + A GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  ALHLSVETVKTHVKHVLTKLEVRDRTQAVVWAYRTGFAYRN  214
             L +S  TVKTH+++ +TKL+ RDR Q V  A+R+G+  R 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

292) SCATT_52150 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 142/222 (64%), Gaps = 3/222 (1%)

Query  4    IRVLIADDQMMVRQGFTVLLNAEPGIEVVGQAVDGAEAVARTAELAPDVVLMDIRMPGVG  63
            I V++ DDQ M+R G+  +L+ ++GI V+G+A DG  A A      PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRITEPPD-ATAKVLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAHAVRVVA  122
            G+ AT  +   PD  + ++LVLTTFD DE V  ALRAGA GFL K A +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPNITKRLIAEFSRMT-GAPRAPLKARAGTLTERETEVLALIAHGLSNAEIAER  181
             G++ L++  +K +++++ R   +A    L AR++TLT+RET+V+   A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVVAEQTVKTHVGRILLKLNLRDRTQAAVFAYDTGLVRPAGY  223
            L ++  TVKTH+ R + KL+ RDR Q   +A+ +GLV  A  
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

293) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 142/222 (64%), Gaps = 3/222 (1%)

Query  4    IRVLIADDQMMVRQGFTVLLNAEPGIEVVGQAVDGAEAVARTAELAPDVVLMDIRMPGVG  63
            I V++ DDQ M+R G+  +L+ ++GI V+G+A DG  A A      PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRITEPPD-ATAKVLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAHAVRVVA  122
            G+ AT  +   PD  + ++LVLTTFD DE V  ALRAGA GFL K A +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPNITKRLIAEFSRMT-GAPRAPLKARAGTLTERETEVLALIAHGLSNAEIAER  181
             G++ L++  +K +++++ R   +A    L AR++TLT+RET+V+   A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVVAEQTVKTHVGRILLKLNLRDRTQAAVFAYDTGLVRPAGY  223
            L ++  TVKTH+ R + KL+ RDR Q   +A+ +GLV  A  
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

294) Sros_1910 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 98/224 (44%), Positives = 153/224 (69%), Gaps = 4/224 (1%)

Query  1    MIRVLLADDEAMIRAGVRAILAADPEIEVVAEAGDGREAIDLVLSHRPDVVLLDIRMPRM  60
            MI V+L DD+AMIRAG+R+IL  D+ I V++EA+DGR A+ ++ + RPDVVL+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAVAELRRVA--PGTAVVMLTTFGEDDYIARALGEGAGGFLLKSGDPRELLAGIHAV  118
            DG++A A LR  +   +  +++LTTF+ D+ +  AL  GA+GFL KS+D+  L+A+++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AEGAAYLSPRVAHRVITQLTG-GRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIAR  177
            A G + LS+  A  V+++L   GR +  V    + A+LT RE DV+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLYLVEGTVKAHVSAILTRLGARNRVQAAILAHEAGLLDSVEPP  221
             L++  +TVK+H++  +T+L AR+R Q   +A  +GL++  E P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

295) B005_0736 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 148/219 (68%), Gaps = 14/219 (6%)

Query  1    MIRVLLADDQALVRAGFGALLNSEPDIEVVAEAGDGDEAIRLARSTRPT-----------  49
            MI V+L DDQA++RAG+ ++L+ +++I V++EA+DG  A+ + R++RP            
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  50   DGLTATGRILADPALERTRIVILTTFDLDEYIFEALRSGASGFLVKDTEPRDLLQAVRVV  109
            DG+ AT+ + ADP L+  RI++LTTFD DE ++ ALR+GA GFL K +++  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  110  HAGEALLSPGITRRLIADFVKRPNRSPGPS--PRLNGLTDREREVLSLVGRGLSNEEIAG  167
              G++ LS+G ++ +++D+ +R   + +    +R   LT+RE +V+   +RGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ELVLSPATAKTHVSRAMVKLGVRDRAQLVVLAYETGLVT  206
            +L +SPAT KTH++RAM KL  RDR+QLV +A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

296) Riv7116_3100 in NC_019678


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 138/207 (67%), Gaps = 4/207 (1%)

Query  1    MISVILVDDQHLIRQGLKTLLELEPDLEIVGEAQNGQEAVAMVEKFQPDVVLMDIRMPLM  60
            MI V+LVDDQ +IR GL+ +LE ++++ ++GEA +G+ A A++   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATKEIKNK--FAQTKILVLTTFDDDEYIKAALQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  ++    +   +ILVLTTFD+DE + AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HRGYTQLGPGIVKKLLTQFPATTENPSPSP-PPILAELTKREKEVLSLIATGANNREIAQ  177
             +G T L++G  K +++++     +++     +  A LT RE +V+   A G +N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLYISEGTVKNHVTNILNRLELRDRTQ  204
             L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

297) Sros_4468 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  5    VRVLVCDDQALIRTGFATIIDAQPGLEVVGECGDGRTAVDLARRLNPDIVVMDVRMPVLD  64
            + V++ DDQA+IR+G+  I++ ++G+ V+GE +DGR+A  + R   PD+V+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRLAGAGVADPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLAPEVTRQLVGRYAARIRPAQAT---PAETALTPRELEVLRLIADGLSNSEIAAT  181
             G + L++  ++ +V+    R R+A      +  ++LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLVT  219
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

298) O5Y_10230 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (487),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 97/225 (44%), Positives = 153/225 (68%), Gaps = 13/225 (5%)

Query  8    IAVALIDDQQLVRAGFRMVIDSQPDLSVVVEASDGQQALTELAARHVDVVLMDVQMPKMD  67
            I V L+DDQ ++RAG+R +++ ++++ V+ EA+DG+ A++ + + + DVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLLADPD--APKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDAIRTVH  125
            G+ AT  L ADPD  A +++VLTTFD DE V++A+RAGA GFL K   +E L+ A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  RGDAVIEARATRRL---LQHVGPLLEGSAPESQL---PEELTPREVEVLEAMAYGLSNSE  179
            +GD+ + A A++ +   L++ G     SA + +L      LT RE +V+ + A GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGR----SATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  180  IAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLVRRAD  224
            IA  + +S +TVKTH+ R ++K H+RDR Q V +AF+ GLV RA+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

299) AARI_14220 in NC_014550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  133 bits (487),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 96/224 (43%), Positives = 154/224 (69%), Gaps = 8/224 (3%)

Query  7    IKVALVDDQLLVRSGFRMLINSQDDMEVIVEAGNGRDALAAPLMSQADVILMDVRMPEMD  66
            I V LVDDQ ++R+G+R +++ + ++ VI EA++GR A+A    S++DV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GIEATERL-LDPEKKAADGPKIIVLTTFDMDEYALRAIQAGASGFLLKDAPPEELLESVR  125
            G+ AT  L  DP+ +A    +I+VLTTFD DE  L A++AGA GFL K A +E L+ +V 
Sbjct  61   GVGATAALRADPDLNAV---RILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  126  TVNRGDAVIAPSTTRRLLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLSN  185
            +V +GD+ +++++++ ++ ++    ++  +  D +LIA   +LT RE +V    A GL N
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLR---RRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  186  PEIAEKLFLSEATVKTHVGHILAKLEARDRVQAVVIAYQTGVVT  229
              IA  LF+S ATVKTH+ + ++KL+ARDR Q V IA+++G+V 
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

300) B005_4088 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 109/227 (49%), Positives = 149/227 (66%), Gaps = 10/227 (4%)

Query  3    VSVLLVDDQPLVRAGFRMILETAPHLSVVGEASDGREALRRVRELLPDVVLMDLRMPGVD  62
            + V+LVDDQ+++RAG+R ILE A  + V+GEA+DGR A+  +R   PDVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVRATADILAWAAPLGHKVRVLALTTFDLDEYAIGALRAGATGFLLKDAPPSELIGAVEV  122
            GV ATA +  +A P  + VR+L LTTFD DE  ++ALRAGA GFL K A +  LI+AVE 
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VADGSAVIAPAVLRRL---LDRFSPLLPDVESEPETDGADPLTSREHEVLRLVARGWSNA  179
            VA G + ++++  + +   L R +    DVE  + T     LT RE +V+   ARG  N 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART---ATLTHRETDVVLGAARGLDNV  175

Query  180  EIAAHLFLGETTVKSHVGNILTKLGLRDRVQAVVHAYESGLV-RPGH  225
             IA +LF++ +TVK+H+   +TKL  RDR Q V  A+ SGLV R+ H
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

301) FraEuI1c_6591 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 147/217 (68%), Gaps = 5/217 (2%)

Query  1    MTRIVIADDDHLMRAGLVELVTVDPSIQVVGEAATGREAVTQTQRLRPDVVLMDVRMPDL  60
            M  +V+ DD+ ++RAGL  ++  D++I+V+GEAA GR A +  +  RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATREL--ATRVPETRVLILTTFEQDDYVFGALRAGASGFLLKRTRPEDLIAAVHTV  118
            DG++AT  L     +   R+L+LTTF+ D+ V++ALRAGA GFL K + +E LIAAV++V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDALLSPSVTRRVIDRLTR--QPVPDLAGTRALADLTPREREVLELMAQGLSNREIAR  176
            A GD+ LS++ ++ V+  L R  ++  D+      A LT RE +V+   A+GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  HLVVEESTVRTHAKRVLAKLGLRDRIQAVIFAYENGI  213
            +L +  +TV+TH +R ++KL  RDR Q V +A+ +G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

302) Cal7507_2351 in NC_019682


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 141/207 (69%), Gaps = 4/207 (1%)

Query  1    MIKVLLVDDQSLIRQGLRALLELEPDLEIVGEAENGESAIKLIAELQPHVVLMDIRMPIM  60
            MI V+LVDDQ++IR GLR++LE ++++ ++GEA +G SA+ +I   +P+VVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATQEIH--QRFSGIKVLVLTTFDDQEYVTAALQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  ++    ++++++LVLTTFD++E V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HKGYTQLGPGIVKKLLTQFstatltqsppt-ppslaELTPREKEVLRLIATGASNREISQ  177
             KG T L++G  K +++++     + +     +  A LT RE +V+   A G  N  I++
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLYISEGTVKNHVTNILNRLNLRDRTQ  204
             L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

303) Caci_7105 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 148/223 (67%), Gaps = 6/223 (2%)

Query  20   IRVILADDQPLIRSGLRVLINDAPDIEVVGEAGTGAEAVRLAAAHTPDVAVMDIRMPEMD  79
            I V+L DDQ++IR+GLR +++DA +I V+GEA+ G  A  +  +  PDV +MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  80   GIEATRRITESSD--TTRVVMLTTFDDDEYVYAALRAGASGFLVKDMALDSILDAVRVTA  137
            G+ AT  +   +D  + R+++LTTFD+DE V AALRAGA GFL K    +S++ AV   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  138  SGDAIIAPSVTRKLIAEFAIRPDPGATAPRRGDKALLDGVTDREREVLTLVGRGLSNGEI  197
             GD+ ++++ ++ +++++  R  +++     +  A L   T+RE +V+   +RGL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATL---THRETDVVLGAARGLDNVSI  177

Query  198  AEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAGLVAPS  240
            A +LFIS+AT K+H+ R  TKL ARDR QLV  A+ +GLV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

304) absA2; SCE8.19 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/225 (43%), Positives = 153/225 (68%), Gaps = 10/225 (4%)

Query  1    MIRVLLADDETIIRAGVRSILTTEPGIEVVAEASDGREAVELARKHRPDVALLDIRMPEM  60
            MI V+L DD+++IRAG+R+IL  ++GI V++EA+DGR A  + R  RPDV L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAAGEMRTTNPDTA---VVVLTTFGEDRYIERALDQGVAGFLLKASDPRDLISGVRA  117
            DG+ A++ +R+ +PD     ++VLTTF+ D  +  AL  G  GFL K++D+  LI++V A
Sbjct  60   DGVGATAALRA-DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VASGGSCLSPLVARRLMTELRRAPSPRSEVS-GERTTLLTKREQEVLGMLGA--GLSNAE  174
            VA G++ LS+  A+ ++++LRR   + ++V    RT+ LT RE +V  +LGA  GL N  
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNVS  176

Query  175  IAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAGLVKDAD  219
            IA+ L +  +T+KT ++   T+L+ R+R Q   IA+ +GLV+ A+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

305) XNR_3205 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 93/223 (42%), Positives = 143/223 (65%), Gaps = 10/223 (4%)

Query  7    VRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVRQVAALDPDVVLMDIRMPELS  66
            + V++ DDQ M+R G+  +L   ++I V+GEA +GR A   + +  PDVVLMD+RMP L 
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GIEATREIVAAD--AAARVLILTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVA  124
            G+ AT  + A     A R+L+LTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGDALLAPGVTRRLITEFSRLAERPQAPGP----GQYGELTERETEVLVQIAQGLSNAEI  180
             GD+ L++G ++ +++++ R   R +++      ++ + LT+RET+V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  181  ADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFAYEAGLVTPT  223
            A  LF++ +TVKTH++R + KL  RDR Q   +A+ +GLV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

306) Sked_36930 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 102/216 (48%), Positives = 156/216 (73%), Gaps = 2/216 (0%)

Query  3    IRVLLADDQALLRGTFRLLLDSVPDITvvgeaadgaeavRLARSAQADLVLMDIRMPGTD  62
            I V+L DDQA++R+ +R +L+  ++I V+GEAADG  A  + R++++D+VLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRQICADDALAGVKVLVLTTFETDELVVAALRAGASGFLGKGVDPAALIDAVRTVA  122
            G+ AT  + AD  L +V++LVLTTF+ DE V+AALRAGA GFL+K+ D+ +LI AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGEQLLSPAATRSLIervvqepepeppavvHGMSD-LTEREREITSLVAGGLSNTEIGQH  181
             G+  LS++A+++++  + +   +     + + +  LT+RE ++    A GL N  I+++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL  217
            LFISPATVKTH+NRAM K  ARDR+QLV +A+ +GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

307) SFUL_1734 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 105/221 (48%), Positives = 161/221 (73%), Gaps = 5/221 (2%)

Query  12   IKVLLADDQALLRSAFRVLVDSEPDMEVVGEAADGAQAVELARATGAGVVLMDIRMPGTD  71
            I V+L DDQA++R+++R +++ ++++ V+GEAADG  A  + R++ ++VVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  72   GLAATRMISADPALAAVRVVMLTTFEVDEYVVQALRAGASGFLGKGAEPEELLNAIRIaa  131
            G++AT  + ADP L AVR+++LTTF+ DE V+ ALRAGA GFL+K+A++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  132  ageallspaaTKGLIATFLAQGGSSGEGPDSAEYAERLAALTvrerevlvlvAGGHSNDR  191
             G++ LS++A+K +++ +  +G S+ +     E   R A+LT RE +V++  A G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATD----VELIARTATLTHRETDVVLGAARGLDNVS  176

Query  192  IAERLQVSPLTVKTHVNRAMAKVAARDRAQLVVIAYESGLV  232
            IA  L +SP TVKTH+NRAM+K+ ARDR+QLV IA+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

308) Franean1_3727 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 159/219 (73%), Gaps = 2/219 (0%)

Query  3    IRVLLADDQTLLRATFRILIDSCEDMEVVaeaadgheaiaaareHHPDVVLMDIRMPGTD  62
            I V+L DDQ+++RA +R +++   ++ V++EAADG+ A+A  R  +PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATAAICSDETLAATHVLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRTIA  122
            G++ATAA+ +D  L A ++L+LTTF+ DE V  AL+ GA GFL+K  +++ L++A+ ++A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGDALLSPAATRALIARFLATPEPTATARTNPAVLTTLTAREREVMVLVAEGYSNHDIAR  182
             GD+ LS++A++++++  L     +AT     A  +TLT RE +V++  A G  N  IAR
Sbjct  121  KGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQ  221
             L ISP T +TH++RAMTKL+ARDR+QLV IA++SGL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

309) Amir_4051 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 97/216 (45%), Positives = 147/216 (69%), Gaps = 6/216 (2%)

Query  14   DDQPLIRAGLGMVLGAQEDIEVVGEAEDGARALEVLSAVRADVVIMDIRMPVLDGVEATR  73
            DDQ++IRAGL  +L  + +I V+GEA DG  A+ V+ + R+DVV+MD+RMP+LDGV AT 
Sbjct  8    DDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATA  66

Query  74   RLSALPD--SPKVLVLTTFDTDEDAFAALRAGASGFLLKNSPPEDTLNAIRVIAAGDAVV  131
             L A PD  + ++LVLTTFD DE+ +AALRAGA GFL K++ +E  + A+  +A GD+ +
Sbjct  67   ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSL  126

Query  132  APRVTRRLLDRFAGRLDTAPAPAD--DRLDVLTEREREVLVLVARGLSNVELAERMHVAE  189
            ++  ++ ++  +  R + +++  +   R   LT+RE +V++  ARGL NV +A  + ++ 
Sbjct  127  SAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISP  185

Query  190  ATVKTHLGRVLTKLGLRDRVQAVVLAYELGLVRPGE  225
            ATVKTHL R +TKL  RDR Q V +A+  GLV  +E
Sbjct  186  ATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

310) Celf_0427 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 100/227 (45%), Positives = 151/227 (67%), Gaps = 7/227 (3%)

Query  1    MTTVLLVDDQALLRSGFRLVIESEPDLRVVGEAADGRVALDQVAALAPEVVLMDIRMPGM  60
            M  V+LVDDQA++R+G+R ++E ++++RV+GEAADGR A+  + +  P+VVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RIVAAHPGSRVLVLTTFDVDDLAFAALRAGASGFLLKTARPDELVDAIRTV  118
            DG+ AT   R  +   + R+LVLTTFD D+  +AALRAGA GFL K+A ++ L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGTSVVAPRVLRRMLDLFAPHLPTGGRAPAPDGQDPRLAALTPRELDVLRLVAEGASNV  178
            A G + +++   + ++    ++L   GR+++     +R A+LT RE DV+   A G  NV
Sbjct  120  AKGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIAYECGLAGSAAR  225
             IA +L +S ATVKTH+    +KL ARDR Q V IA+  GL   A +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

311) Snas_0645 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 150/222 (68%), Gaps = 5/222 (2%)

Query  1    MIRVLLADDQVLMRGGFRALLDAEDDISvvaeaangeeavSLAAEHVPDVALIDIQMPGT  60
            MI V+L DDQ ++R+G+R++L+ + +I V++EAA+G  A ++     PDV L+D++MP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   GGIEaarriaarPELASVRVVMLTNYGFDEYVYNALRAGASGFLVKDIEPAELLHAVRQA  120
            +G+ A+  + A P+L +VR+++LT ++ DE V  ALRAGA GFL K  ++  L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDAPLSPDVARRLMRDFASRPLSPNPVD----DERLTNREREVVVLAAQGLNNEEIAE  176
            A+GD++LS++ A+ ++ D+  R  S+  V+       LT+RE +VV+ AA+GL+N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGLITPKQ  218
             L ISP+T KTH++RAM KL  RDR QLV  A+ SGL+   +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

312) TIIST44_04900 in NC_017550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVAEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATQRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLI  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

313) SVEN_3239 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 154/221 (70%), Gaps = 11/221 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALEVLRSTAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVETTRRICSQPD--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLGAIRSVH  120
            GV +T  + ++PD  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFSPMLPSSGKEPEHKEL----GRLTDREREVMLLVAQGLSNGE  176
             GD+ +++++++ ++    + L   G+ + + EL    + LT+RE +V+L  A+GL N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV  217
            IA  L +S ATVKTH+ R +TKL  RDR Q+V +A+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

314) NOCYR_3286 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (482),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 152/223 (69%), Gaps = 17/223 (7%)

Query  3    ITVLVVDDQELMRMGLKMVLGAHPDIEVIGEAANG--ALAVTQASELKPDVVLMDVRMPV  60
            I V++VDDQ ++R GL+ +L  +++I VIGEAA+G  A+AV ++S  +PDVVLMD+RMP+
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGS--RPDVVLMDLRMPI  58

Query  61   VDGVTATTQIVEAG--HGSRVLVMTTFDLDEHALGALRAGASGFLLKDTPPEDLISAIRS  118
            +DGV AT+ +      ++ R+LV+TTFD DE+ L+ALRAGA GFL K + +E LI+A+ +
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  VAAGDAVVSPKVTKRLLDRMISENPGRTRDPGVLDV------LTAREREVLEQIAAGRSN  172
            VA GD+ +S+  +K     ++S+   R R +  +++      LT RE +V+   A G  N
Sbjct  119  VAKGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  173  AEIAAQLFLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGLV  215
              IA +LF+S ATVKTH+ R +TKL  RDR Q V +A+ +GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

315) Noca_1318 in NC_008699


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (482),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 148/220 (68%), Gaps = 9/220 (4%)

Query  7    VLLVDDDPLVRSALSLMLGGQSDIEVVGEAADGHEGVRLAAELRPDVVLMDIRMPRLDGL  66
            V+LVDD++++R++L  +L  +++I V+GEAADG+ +  +    RPDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   GATRELHARP--APPRVIVLTTFDADEHVVEALAAGADGFLLKDTAPPQIIEAIRKVVDD  124
            GAT  L+A P   + R++VLTTFD+DE+V+ AL AGADGFL K + +  +I A+  V  +
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  EPMLSPSVTRTLIRRLRDEPDaaadvaaartaeaQSRLALLTDRERDVALAVGRGLSNAE  184
            +  LS++ ++T++  LR    +A+DV         +R A LT+RE DV L+ +RGL N  
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELI------ARTATLTHRETDVVLGAARGLDNVS  176

Query  185  IAGDLYLSVPTVKAHVSRLFDKLQVTNRVQIAICVHDAGL  224
            IA DL++S +TVK+H++R   KL+  +R Q+      +GL
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

316) B446_20085 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (482),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 98/223 (44%), Positives = 144/223 (65%), Gaps = 4/223 (1%)

Query  22   VIRVLVADDQQMVRQGFTVLLNTKPDIEVVGQAVDGRDAVAKVGELVPDVVLMDIRMPEL  81
            +I V++ DDQ M+R G+  +L+  ++I V+G+A DGR A A +    PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  82   GGIEATRLITADH--PGIRVLVLTTFDLDEYVYEALRAGAAGFLLKDASADQLAEAVRVV  139
            +G+ AT  + AD    ++R+LVLTTFD DE V  ALRAGA GFL K A ++ L  AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  140  AAGDALLAPGITRRLIAEFSRLD-GSPRPPLRQRVGELTERETEVLALIAQGLSNAEIAG  198
            A GD+ L++G ++ +++++ R + ++    L  R + LT+RET+V+   A+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  199  RLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY  241
             L ++  TVKTH+ R + KL  RDR Q   +A+ SGLV  +  
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

317) Sfla_4659 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 108/221 (49%), Positives = 161/221 (73%), Gaps = 5/221 (2%)

Query  4    IKVLLADDQALLRSAFRVLVDSESDMHvvgeaadgaeavTLARSTRADVVLMDIRMPGTD  63
            I V+L DDQA++R+++R +++ +++++V+GEAADG  A ++ R++R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLTATRMISADPDLAGVRIVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNAIRVAA  123
            G+ AT  + ADPDL +VRI++LTTF+ DE V+ +LRAGA GFL+K+A++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGEALLSPVATKGLIASFLaqggsagegadaaeyaerlaalTGREREVLVQVAGGHSNDQ  183
             G++ LS+ A+K +++ +       G +A   E   R A+LT RE +V++  A G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  184  IADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  224
            IA  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

318) F750_2025 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 108/221 (49%), Positives = 161/221 (73%), Gaps = 5/221 (2%)

Query  4    IKVLLADDQALLRSAFRVLVDSESDMHvvgeaadgaeavTLARSTRADVVLMDIRMPGTD  63
            I V+L DDQA++R+++R +++ +++++V+GEAADG  A ++ R++R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLTATRMISADPDLAGVRIVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNAIRVAA  123
            G+ AT  + ADPDL +VRI++LTTF+ DE V+ +LRAGA GFL+K+A++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGEALLSPVATKGLIASFLaqggsagegadaaeyaerlaalTGREREVLVQVAGGHSNDQ  183
             G++ LS+ A+K +++ +       G +A   E   R A+LT RE +V++  A G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  184  IADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  224
            IA  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

319) Amir_6235 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 103/218 (48%), Positives = 151/218 (70%), Gaps = 7/218 (3%)

Query  1    MIRVLVVDDQEMVREGFSALLDAQPDITvvgaagdgaegvakvRALRPDVVLMDVRMPGV  60
            MI V++VDDQ M+R G+ ++L+ +++I V+G A+DG  + A +R+ RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATGMLADDPA----RVLVLTTFDLDDYVYEALRAGASGFLLKHAPARELLDAVRVV  116
            DG+ AT+ L  DP     R+LVLTTFD D+ V  ALRAGA GFL K A +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  ARGDALLAPSITKRLIEDFvrarparavrp--paLTALTGRETEVLLMVARGLSNAEVAR  174
            A+GD+ L+++ +K ++ D+ R   + +     +  ++LT RET+V+L  ARGL N  +AR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  GLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGLV  212
            +L ++  TVKTH++R +TKL  RDR+Q V  A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

320) AORI_7698 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 144/218 (67%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDHAMFRSGMRAVLDTQADFECVGEAADGREAVAQAASLRPDVAVLDVRMPKL  60
            MI V+L DD+AM+R+G+R++L+ +A++  +GEAADGR A A   + RPDV ++D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEAIMSAPG-NDTRVLVLTTYDSDEYVYRALRAGASGFLLKSLAPEELVSAMRVA  119
            DG++AT A+ + P+ N  R+LVLTT+D+DE V  ALRAGA GFL KS  +E L++A+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALIDPTVTRRLVSTF--ATSIepaaaepaeleRLTSREREVLLLVADASSNAEIAV  177
            A+GD+ + +  ++ +VS +             A    LT RE +V+L  A +  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLHVGEETVKTHVSRILAKLGLRDRVHAVVYAYRNGLV  215
             L ++  TVKTH++R ++KL  RDR + V  A+R+GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

321) B737_2814 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 153/220 (70%), Gaps = 7/220 (3%)

Query  3    VRVLLVDDEPLIRAGLRAIVDSEAGLSVVGEAADGAEVPGLVARLRPDVVLMDVRMPAVD  62
            + V+LVDD+++IRAGLR+I++ +AG+ V+GEAADG    +++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATTHLMSTVD-EPPKVIVVTTFENDDYVYDALVAGASGFLLKRARPEEIVAAIRTVV  121
            G+ AT+ L +  D ++ +++V+TTF+ D+ V  AL AGA GFL K A +E ++AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGESLLFPAAIRRLAAQ---HAPAPAGDGLA--SAGLTERERDVLRLVAAGLSNVEIASE  176
             G++ L ++A + + ++   ++ ++++  L   +A LT+RE DV+   A GL NV IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFVTPS  216
            L+++  TVKTH+   ++KL ARDR Q V  A+ SG+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

322) RAM_14440 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 153/220 (70%), Gaps = 7/220 (3%)

Query  3    VRVLLVDDEPLIRAGLRAIVDSEAGLSVVGEAADGAEVPGLVARLRPDVVLMDVRMPAVD  62
            + V+LVDD+++IRAGLR+I++ +AG+ V+GEAADG    +++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATTHLMSTVD-EPPKVIVVTTFENDDYVYDALVAGASGFLLKRARPEEIVAAIRTVV  121
            G+ AT+ L +  D ++ +++V+TTF+ D+ V  AL AGA GFL K A +E ++AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGESLLFPAAIRRLAAQ---HAPAPAGDGLA--SAGLTERERDVLRLVAAGLSNVEIASE  176
             G++ L ++A + + ++   ++ ++++  L   +A LT+RE DV+   A GL NV IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFVTPS  216
            L+++  TVKTH+   ++KL ARDR Q V  A+ SG+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

323) AMES_2813 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 153/220 (70%), Gaps = 7/220 (3%)

Query  3    VRVLLVDDEPLIRAGLRAIVDSEAGLSVVGEAADGAEVPGLVARLRPDVVLMDVRMPAVD  62
            + V+LVDD+++IRAGLR+I++ +AG+ V+GEAADG    +++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATTHLMSTVD-EPPKVIVVTTFENDDYVYDALVAGASGFLLKRARPEEIVAAIRTVV  121
            G+ AT+ L +  D ++ +++V+TTF+ D+ V  AL AGA GFL K A +E ++AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGESLLFPAAIRRLAAQ---HAPAPAGDGLA--SAGLTERERDVLRLVAAGLSNVEIASE  176
             G++ L ++A + + ++   ++ ++++  L   +A LT+RE DV+   A GL NV IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFVTPS  216
            L+++  TVKTH+   ++KL ARDR Q V  A+ SG+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

324) AMED_2842 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 153/220 (70%), Gaps = 7/220 (3%)

Query  3    VRVLLVDDEPLIRAGLRAIVDSEAGLSVVGEAADGAEVPGLVARLRPDVVLMDVRMPAVD  62
            + V+LVDD+++IRAGLR+I++ +AG+ V+GEAADG    +++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATTHLMSTVD-EPPKVIVVTTFENDDYVYDALVAGASGFLLKRARPEEIVAAIRTVV  121
            G+ AT+ L +  D ++ +++V+TTF+ D+ V  AL AGA GFL K A +E ++AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGESLLFPAAIRRLAAQ---HAPAPAGDGLA--SAGLTERERDVLRLVAAGLSNVEIASE  176
             G++ L ++A + + ++   ++ ++++  L   +A LT+RE DV+   A GL NV IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFVTPS  216
            L+++  TVKTH+   ++KL ARDR Q V  A+ SG+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

325) Kfla_2678 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 148/221 (67%), Gaps = 7/221 (3%)

Query  11   VLLVDDQDLVRAGFRMILSVEQDIEVVGEAADGEKAVELALDLRPDVVLMDVQMPGLDGI  70
            V+LVDDQ ++RAG+R IL  + +I V+GEAADG  A  +  + RPDVVLMD++MP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  71   AATQRIVAA---DAGKVVILTTFDRDDYLFESLGAGASGFLLKNTAPEDLVEAIQVVHSG  127
            +AT  + A    +A ++++LTTFD D+ ++ +L AGA GFL K++ +E L+ A++ V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  HALLAPEVTRRVIKRFAGGGERVYRPDLVA---ELTDREREVLGLIARGLTNTEIAGQLF  184
            ++ L++  ++ V+  +   G      +L+A    LT+RE +V+   ARGL N  IA +LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  185  VGEATVKTHVSRVLLKLGLRDRVQAVVFAYECGLVVPGDDA  225
            ++ ATVKTH++R + KL  RDR Q V +A+  GLV  ++++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

326) O3I_023090 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 92/221 (42%), Positives = 150/221 (68%), Gaps = 8/221 (3%)

Query  6    VITVLIVDDDPLVRTGLRAIMDAERDIEVVGEAQDGSEVLDRVSATRPDVVLMDVRMPTV  65
            +I V++VDD++++R+GLR+I++ + +I V+GEA DG   +  + ++RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  66   DGiaatrillaalt-DPPKVVVITTFENDSYVYDALRVGAAGFLLKRARPEEFTQAVRTV  124
            DG++AT  L A    ++ +++V+TTF+ D  V  ALR GA GFL K A +E +  AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  125  ATGDSVLFPSAIRALVA-----ARPPLPNSLLAQ-AKLTDRENEVLRAMASGLTNAEIAA  178
            A GD+ L ++A +++V+     +R++    L+A+ A LT+RE +V+ + A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  AMFLGVETVKTHVRNVLMKLRARDRTQAVITAYESGFITPG  219
             +F++  TVKTH+   + KL+ARDR Q V  A+ SG++  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

327) B446_20770 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 92/226 (41%), Positives = 155/226 (69%), Gaps = 11/226 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRATAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICSEPE--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPADLLTAIRSVH  120
            GV AT  + ++P+  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSAGQQPQHKEL----ERLTDREREVMVLVAQGLSNGE  176
             GD+ +++++++ ++    + L   G+ + + EL      LT+RE +V++  A+GL N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLVRAGGH  222
            IA  L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV  + H
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

328) Kfla_1135 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (479),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 89/207 (43%), Positives = 147/207 (72%), Gaps = 6/207 (2%)

Query  14   RAGLRLLIDNTDDLRVVGEASDGREALALAREHQPDVVLMDLQMPVMGGVETTAAIRADP  73
            RAGLR ++++++ +RV+GEA+DGR A+A+ R  +PDVVLMDL+MP+++GV +TAA+RADP
Sbjct  14   RAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  74   LLKDTPVVVLTTFDHdadvvdavqaGASGYLLKDLAADELRGAIRTAVTGGAPIAPKVAK  133
             L+   ++VLTTFD D +V+ A++AGA G+L K   ++ L +A+ +   G++++++  AK
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  134  LMMHRISRMPSRKVQEETL----AGLTARELDILAHVGRGLSNEEIGQALFLSPETARTY  189
             ++  + R  +R   +  L    A LT RE D++   +RGL N  I++ LF+SP T +T 
Sbjct  133  TVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTH  191

Query  190  VSRLLAKLGVRDRSQLVVLAHKAGLVD  216
            ++R ++KL  RDR+QLV +A ++GLV+
Sbjct  192  LNRAMTKLHARDRGQLVSIAFRSGLVN  218

329) PFREUD_21980 in NC_014215


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 145/217 (67%), Gaps = 6/217 (2%)

Query  5    ITVFLADDQELVRSGFRMLIDAEDDMEVVGEGVDGADTVRQIATLRPDVVLMDIRMPGMD  64
            I V L DDQ ++R+G+R +++ + ++ V+GE+ DG  +   I   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEAT---KQVVALDNGTKVLVLTTFDLDEYVFAALKAGASGFLLKDTRPADLLSAIRAV  121
            GV AT   +    L N+ ++LVLTTFD DE V+AAL+AGA GFL K + +  L++A+ AV
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AAGDSVVAPSATRRLLDHVAPTLPDHVG-EPDERLDVLTDREREVLVEVAKGATNAEIAT  180
            A GD+ ++++A++ ++ ++        + E   R   LT+RE +V++  A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  NLFMAEGTVKTHIGRLLAKLHCRDRVGLVLFAYETGL  217
            +LF++ +TVKTH+ R ++KLH RDR  LV +A+ +GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

330) ROP_65310 in NC_012522


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 147/223 (66%), Gaps = 9/223 (4%)

Query  3    ITVFIADDQAMVRQGFGALLASQPDISVIGDAPDGAVAVSEVKRLRPDVVLMDVRMPEMN  62
            I V + DDQAM+R G+ ++L  +++I VIG+A+DG  A + ++  RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAARVILSAGFD-PPVRVLMLTTFDVDDYVYEALSIGASGFMLKDAPAEELIRAVRVV  121
            G++A+   L A+ D  +VR+L+LTTFD D+ V  AL  GA GF+ K A +E LI AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ADGEALLAPTVTRRLIADVTSRRSTARRKPAAL----SALTPREREVLELIARGMSNTEI  177
            A G++ L++  ++ +++D+  RR         L    ++LT RE +V+   ARG+ N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  178  AERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLVTPG  220
            A  LF++  TVKTH+ + ++KL+ RDR+Q V +A+ SGLV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

331) Sros_5905 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (479),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 151/225 (68%), Gaps = 3/225 (1%)

Query  3    IRVLLVDDQPLLRTGFRLILEAEPDVTVVGEAGDGKAAQDQSRALMPDVVLMDIRMPGVD  62
            I V+LVDDQ+++R+G+R ILE ++++ V+GEA+DG++A    R+  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRIVREAVSGAHVPKVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRV  122
            G+ AT  +  ++  + +  ++LVLTTFD DE ++ ALRAGA GFL K   ++ L+ A+  
Sbjct  61   GVGATAALRADP--DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGDAIVAPSVTRRLLDRFGARLPSAHQQPTPARLDRLTEREMEVLRLIARGMSNAEIA  182
            VA GD+ ++++ ++ ++  +  R  SA +    AR   LT+RE +V+   ARG+ N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  AELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLITPGAIP  227
             +L +S +TVKTH+   +TKL  RDR Q V +A+ +GL+  +  P
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

332) SGR_3409 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  131 bits (479),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 147/220 (67%), Gaps = 4/220 (1%)

Query  6    IRVLIVDDQMMVREGFSVLLNAMPGISVVGEAVDGRQALAQVTALRPDVVLMDIRMPEMN  65
            I V++VDDQ M+R G+  +L+  +GI V+GEA DGR A+A + + RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATREIVARD--AEAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  123
            G+ AT  + A       ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  SGEALLAPTVTRRLITEFSKlaeaprppa-larIGDLTERETEVLVLIAQGLSNAEIASH  182
             G++ L++  ++ +++++ + + ++     +AR + LT+RET+V++  A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  222
            L+++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

333) AMIS_27430 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 146/218 (67%), Gaps = 5/218 (2%)

Query  4    IRVLLADDHALIRSALHMVLADAGDIEVAGEAQTGADAVRLSRELHPDVVLMDIRMPGLD  63
            I V+L DD+A+IR++L+ +L DAG I V GEA  G  A  + R  +PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRITAEP--GGPHVVVLTTFDDDEYVYGALRAGASGFLVKDMALEEIVTAVRVVA  121
            G+ AT  + A+P   + +++VLTTFD+DE V +ALRAGA GFL K    E +++AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  TGDALIAPSVTRRLIAMVARHPSPAPGGPV--PLNGITGRERQVLTLIGQGATNAEIAER  179
             GD+ ++++ ++ +++ + R+  +A +  +      +T RE +V+   ++G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  MHITTPTVKSYVGRLMTKLDARDRVQLVIVAYRTGLVT  217
            + I+ +TVK+ + R MTKL+ARDR QLV +A+R+GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

334) Celgi_1062 in NC_015671


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 101/230 (44%), Positives = 156/230 (68%), Gaps = 13/230 (5%)

Query  10   VIQVALVDDQQLVRAGFRMVIDSQPDLHVVLEAGDGAQAVHALDPASRTALGRVDVVLMD  69
            +I+V LVDDQ ++RAG+R +++ +++++V+ EA+DG  A   +  +      R DVVLMD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGS------RPDVVLMD  53

Query  70   VRMPQMDGLEATARIVARGTDDAPAPRVIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEE  129
            +RMP +DG+ ATA +  R+  D  A R++VLTTFD DE VLAA+RAGA GFL K A +E 
Sbjct  54   LRMPILDGVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSES  111

Query  130  MLAAIRTVHRGDAVIAPSSTRRLLEHLVTALPEQQEDDGANPARLAVADLTEREREVLLL  189
            ++AA+ +V +GD+ +++++++ ++ +L      +   D    AR   A LT+RE +V+L 
Sbjct  112  LIAAVEAVAKGDTSLSAGAAKTVVSDLRR--RGRSATDVELIAR--TATLTHRETDVVLG  167

Query  190  MARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVTAYEAGLV  239
             ARG  N  I++DLF++ ATVKTH+ R ++KL ARDR Q V  A+ +GLV
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

335) Ksed_04500 in NC_013169


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 149/221 (68%), Gaps = 14/221 (6%)

Query  5    IFLVDDQSLVRAGFRMVLDAQPDMSVVGEAPDGQSAVDQLKTIAADVVLMDIRMPRLDGI  64
            + LVDDQ+++RAG+R +L+ ++++ V+GEA+DG+SA   ++   +DVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRVLLGRDKHPGGAEPKVVVLTTFDMDEYAYAALEAGASGFLLKDAGPEELLAAIRAV  124
             AT  L +   +P+    +++VLTTFD DE   AAL AGA GFL K A++E L+AA+ AV
Sbjct  63   GATAALRA---DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  125  ASGDAVVAPSTTKRLLERFVPTLTPEVADVASPAEQQEYL--REVLTEREYEVFEAVAAG  182
            A GD+ ++++++K        T+ +++   + +A + E +     LT+RE +V  + A G
Sbjct  120  AKGDTSLSAGAAK--------TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARG  171

Query  183  LSNTEIAKELFVAEATIKTHIGRLLFKLGCRDRVQLVITAY  223
            L N  IA++LF++ AT+KTH+ R + KL  RDR QLV  A+
Sbjct  172  LDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

336) Aazo_0236 in NC_014248


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 140/207 (68%), Gaps = 4/207 (1%)

Query  1    MIKVLLTDDQSLIRQGLRALLELETDLEIVGEAENGEIAIHLVKQLQPDVVLMDIRMPII  60
            MI V+L DDQ++IR GLR++LE ++++ ++GEA +G  A+ +++  +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATKTIQTH--FPATKVLVLTTFDDDLYIKAALQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT +++++  + A ++LVLTTFD+D  + AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  DKGFSQLSPEIVKKLLTQFPTTAPDPVK-SIPPSLVELTPREKQVLRLIANGASNREIAH  177
             KG + LS+   K +++++   +  +    + +    LT RE +V+   A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  TLYISEGTVKNHVTNILSRLNLRDRTQ  204
             L+IS +TVK H+   +++L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

337) O5Y_11195 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (477),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 147/220 (67%), Gaps = 3/220 (1%)

Query  3    ITVFIADDQAMVRQGFGALLSAQPDISVIGDAPDGKIAVAEVARLRPDVVLMDVRMPEMN  62
            I V + DDQAM+R G+ ++L  +++I VIG+A+DG+ A A +   RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAARQILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKDAPAEELIRAVRVVA  122
            G++A+  + +     +VR+L+LTTFD D+ V  AL  GA GF+ K A +E LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGQALLAPTVTRRLIADV--TSrraaprarpaaLDALTPREREVLELIARGLSNVEIAER  180
             G++ L++  ++ +++D+   +R A+     A   +LT RE +V+   ARGL NV IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLVTPG  220
            LF++  TVKTH+ + ++KL+ RDR+Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

338) RER_23880 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (477),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 147/220 (67%), Gaps = 3/220 (1%)

Query  3    ITVFIADDQAMVRQGFGALLSAQPDISVIGDAPDGKIAVAEVARLRPDVVLMDVRMPEMN  62
            I V + DDQAM+R G+ ++L  +++I VIG+A+DG+ A A +   RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAARQILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKDAPAEELIRAVRVVA  122
            G++A+  + +     +VR+L+LTTFD D+ V  AL  GA GF+ K A +E LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGQALLAPTVTRRLIADV--TSrraaprarpaaLDALTPREREVLELIARGLSNVEIAER  180
             G++ L++  ++ +++D+   +R A+     A   +LT RE +V+   ARGL NV IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLVTPG  220
            LF++  TVKTH+ + ++KL+ RDR+Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

339) Snas_3359 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (477),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 141/218 (65%), Gaps = 4/218 (1%)

Query  5    IRVLICDDQALIRAGFATIIGAQPDLDVVGECADGRAAVELSRHLNPDIVVMDVRMPVLD  64
            I V++ DDQA+IRAG+  I+  ++++ V+GE ADGR+A  + R   PD+V+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRQLAGAGVEDPVKVLVVTTFNLDKYVYEALRAGASGFLLKDAPPAQLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ D  V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGAALLDPDVTRQLVGRYAARIRPAEDT---PDDTALTPRELEVLRHIANGLSNSEIAAT  181
             G + L ++ ++ +V+    R R+A D    +  ++LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGLAS  219
            L IS  TVKT ++R +TKL  RDR Q V  A+R GL +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

340) Snas_5595 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (477),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 144/217 (67%), Gaps = 4/217 (1%)

Query  1    MIRVLLADDENMVREGVKSILTTDAGIEVVAEAGNGREAVELARAHRPDVALIDIRMPVL  60
            MI V+L DD+ M+R G+++IL  DAGI V++EA++GR A  + R+ RPDV L+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGALAELRQAA--PATRCVMLTTFDEDEFIARALDAGAAGFLLKASDPRELIIGVRAV  118
            DG+GA A LR  +   A R ++LTTFD DE +  AL AGA GFL K++D+  LI +V AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGAAYLSPRVAGRVIAEF-DTDRLTRGTGAQRKVAELTPRENEVLGLIASGLSNQEIGR  177
            A G + LS+  A  V++++   +R + +     + A LT RE +V+   A GL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLHLTEGTVKAHVSAILQRLGVRNRVEAAIIGYQAGL  214
             L ++ +TVK+H++  + +L  R+R +   I++++GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

341) L083_6493 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 108/220 (50%), Positives = 145/220 (66%), Gaps = 3/220 (1%)

Query  3    ISVLLADDQHLVRAGFRSLLKRDKQIVVAGEAATGDEAVRTARTLRPDVVLMDIRMPGLD  62
            I V+L DDQ ++RAG+R++L  D  I V GEAA G  A    R  RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRIVLDPALPHCRVVILTTFETDEYVfaalaagasgflTKEVEPEGLRHAVRVVA  122
            G+ AT  +  DP L   R+++LTTF+ DE V+AAL AGA GFL+K  ++E+L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLSPSVTRRVVSRFAHRPVPVSPAP--DRLTQLTARELEVVRLVAEGLSNDEVARE  180
             G++ LS++ ++ VVS + +R  + +      R + LT RE +VV   A GL N  +AR+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVISPLTAKTHITRAIGKLGVRDRVQLVILAYREGLVGRP  220
            L ISP T KTH+ RA+ KL  RDR QLV +A+R GLV R+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

342) Tfu_0767 in NC_007333


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 149/219 (69%), Gaps = 4/219 (1%)

Query  1    MIRVLLADDQALVRAGFRALLDSAPDISvvaeaatgaeavrlavaERPDIALLDIRMPEL  60
            MI V+L DDQA++RAG+R++L+ A +I V++EAA G  A  +  + RPD+ L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAAERILADPRLSSTRVVILTTFDLDEYIFEALRLGASGFLVKDTEPEDLINGVRVV  120
            DG++A+  + ADP L++ R+++LTTFD DE ++ ALR GA GFL K +++E LI +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGEALLSPSVTRRVIAEY--AGrprrpapdrrlrdltdrereVVALVGE-GLSNEEIAA  177
            A+G++ LS++ ++ V+++    GR+              +    V L +  GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGLVA  216
             L +SPATVKTH++RAM+KL+ RDR+QLV +A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

343) Cfla_0278 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 150/217 (70%), Gaps = 4/217 (1%)

Query  8    VVVADDQPLVRAGLSTVIDTEPGLEVVGQAGDGATAVALAHELRPDVVCMDIRMPGTDGI  67
            VV+ DDQ+++RAGL  +++ ++G+ V+G+A+DG +A A+ +  RPDVV MD+RMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   TATRALCGPDVTDPIPVLVLTTFDVDEYLFGALEAGASGFLLKDAEPATLVEAVRSVAAG  127
             AT AL +    +++ +LVLTTFD DE +++AL AGA GFL K A++ +L+ AV +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  HGMLANAltrrvlrevvtrrrtQPVTA--ARASELLTPRELDILLLLAQGMSNEEIAREL  185
            +  L+ + ++ V+ ++  R R+       AR++  LT RE D++L  A+G+ N  IAR+L
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-LTHRETDVVLGAARGLDNVSIARDL  181

Query  186  YLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNGIVD  222
            ++  +TVK+HL RAM KL  R R Q V  A+++G+V+
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

344) FraEuI1c_2868 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 151/217 (70%), Gaps = 6/217 (2%)

Query  7    VVVADDQTLVRSGFAALLAAEPDIDVVGQAGTGADAVAEVTRTRPDVVLMDIRMPVLDGI  66
            VV+ DDQ+++R+G+ ++L  +++I V+G+A+ G  A A +  +RPDVVLMD+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATRRIRADPALAGVQVLILTTFDLDDYVYGALRAGASGFLLKGMEPTALVHAVHLVRDG  126
             AT  +RADP L +V++L+LTTFD D+ V +ALRAGA GFL K+ ++ +L+ AV+ V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  127  GALLAPSATRLLIDAQAHAPARRQETSMAL---AGNVTererevlvlvAEGLANADIADR  183
            ++ L+++A++ ++    +    R  T + L   ++ +T+RE +V++  A GL N  IA  
Sbjct  123  DTSLSAGAAKTVVSDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LSISPLTVKSHLSSLLAKHNLATRVQLVVLAYESGLV  220
            L ISP TVK+HL+  ++K +   R QLV +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

345) FraEuI1c_6816 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 149/218 (69%), Gaps = 5/218 (2%)

Query  1    MIRVVVADDQPLIRLGlrvlveteedlelvgeaeDGRTAVELVRRTRPDVVLLDIRMPVL  60
            MI VV+ DDQ++IR GLR ++E      +   A DGR+A  ++R +RPDVVL+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAA-DGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAALREITADPALHGTRVVMVTTFELDEYVFEALRGGASGFVLKDSEPADLLRAIRVV  120
            DG++A   + ADP L++ R++++TTF+ DE V+ ALR+GA GF+ K +++  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGESLLSPAVTRRVIEAFARRPVGPGAPDL----DGLTDREREVMGLVGHGLSNDEIAA  176
            A G++ LS++ ++ V+  + RR  ++   +L      LT+RE +V+   ++GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLVISPATARTHVSRVMVKLGARDRAQLAVLANQAGLV  214
             L ISPAT +TH++R M KL ARDR+QL  +A ++GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

346) SBI_01649 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 149/217 (69%), Gaps = 7/217 (3%)

Query  6    LTVLIADDEELTRTGLRALLSAKPDLEVVGEAADGAEVLPLVRTTRPDVVLMDVRMPGMD  65
            + V++ DD+ + R+GLR++L   +++ V+GEAADG   ++++R +RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATRQLRSTLE-DPPKVVVITTFESDEHVYDALRAGADGFILKRTPSQAIAHAIRLVA  124
            G+ AT  LR+  + ++ +++V+TTF++DE+V  ALRAGADGF+ K + S+++  A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGDSVLFPDAVRRLVA-----ARPLPPVGPAAGHAPLTARETEILRLMATGLSNPDIAGR  179
             GD+ L ++A + +V+     +R+   V   A  A LT RET+++   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LTVSLETVKTHVSNLLTKLGAQNRTQAVILAYESGLV  216
            L +S  TVKTH++  +TKL A++R Q V +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

347) O5Y_13300 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (476),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/208 (45%), Positives = 146/208 (71%), Gaps = 9/208 (4%)

Query  1    MITVALVDDHAAIRSGLAMILRQHDDIDVVAEAGDGASAITVTRTHQPDVVLMDVRMPGT  60
            MI V LVDD+A IR+GL  IL ++ +I V++EA+DG SA++V R  +PDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEAT---RQIIGTTRSRVLVLTTFDLDEYVFAALRAGASGFLLKTATADELTNAIRNV  117
            DG+ AT   R   +    R+LVLTTFD DE V+AALRAGA GFL K+A ++ L  A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGDAVLAPRAARALIGEFVQRAPKPTEPLGL----SELTDREREVLALLGTGMSNAELS  173
            A GD+ L++ AA+++++++ +R+  +T+ + L    + LT+RE +V+   + G+ N  ++
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATD-VELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  RELGVGAPTVKSHVSRVLAKLHLTSRVQ  201
            R+L ++++TVK+H++R ++KLH   R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

348) AORI_0941 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 147/218 (68%), Gaps = 3/218 (1%)

Query  1    MIRVLIADDQALLRGSFRVLVDSAPDLEVVGEASDGAEAAELAEKERPDVVLMDVRMPEL  60
            MI V++ DDQA++R+++R +++ A ++ V+GEA+DG  A  +    RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICASAATEGVHVLMLTTFDLDAYVYSALRAGASGFLLKDTPPAELLTAIRVV  120
            DG+ AT  + A +  ++V++L+LTTFD D  V +ALRAGA GFL K + +  L++A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEGLLAPSITRRLIAEFARLPEPGQRVA--ASLDNITTREREVLSLIARGLSNDEIAG  178
            A G+  L+++ ++ +++++ R   ++  V   A    +T RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  TLHLGLATVKTHIGHLLHKLAARDRAQLVIAAYESGLV  216
             L ++ ATVKTH+ + + KL ARDR+QLV  A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

349) PAZ_c00560 in NC_017534


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

350) TIB1ST10_00265 in NC_017535


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

351) PAC1_00265 in NC_018707


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

352) PAGK_0051 in NC_021085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

353) PPA0055 in NC_006085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

354) HMPREF0675_3055 in NC_014039


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

355) TIA2EST22_00260 in NC_016512


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

356) TIA2EST36_00270 in NC_016511


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

357) TIA2EST2_00255 in NC_016516


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 150/221 (68%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E + ++ V++EA++G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITASP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  + A P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGDAVVAPSATRRLLDHVVPTLPNDPKAADK-----RLSVLTDREKEVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R + LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

358) BN159_4044 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 152/221 (69%), Gaps = 11/221 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRETAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R +  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVETTRRICSDP--NPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAAIRAVH  120
            GV +T  + +DP  N+ ++L+LTTFD DE  +++L+AGA GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSTGKEPQHKEL----ERLTDREREVMVLVAQGLSNGE  176
             GD+ +++++++ ++    + L   G+ + + EL      LT+RE +V++  A+GL N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV  217
            IA  L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

359) AAur_4172 in NC_008711


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 144/221 (66%), Gaps = 6/221 (2%)

Query  5    VIKVLLVDDQPLLRMGFRLILEGEEDVHVVGEASDGIEAVRQVEALQPDVVLMDVRMPGM  64
            +I V+LVDDQ+++R G+R ILE + +++V+GEA+DG  A   + + +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   DGIEATKQITDSG--SDARVIILTTFDLDEYAFSGLQAGASAFLLKDVAPSELVHAVRLV  122
            DG+ AT  +      +  R+++LTTFD DE  +++L+AGA +FL K   +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ASGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRDPLLDELTPRETEILTTIAEGLSNAE  182
            A GD+ +++  ++ ++    R G  + +     R +    LT RET+++   A GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA---TLTHRETDVVLGAARGLDNVS  176

Query  183  IAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETGLV  223
            IA+ +F+S ATVKTH+ R ++KL+ RDR Q+V  A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

360) ARUE_c43020 in NC_018531


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  130 bits (475),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 144/221 (66%), Gaps = 6/221 (2%)

Query  5    VIKVLLVDDQPLLRMGFRLILEGEEDVHVVGEASDGIEAVRQVEALQPDVVLMDVRMPGM  64
            +I V+LVDDQ+++R G+R ILE + +++V+GEA+DG  A   + + +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   DGIEATKQITDSG--SDARVIILTTFDLDEYAFSGLQAGASAFLLKDVAPSELVHAVRLV  122
            DG+ AT  +      +  R+++LTTFD DE  +++L+AGA +FL K   +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ASGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRDPLLDELTPRETEILTTIAEGLSNAE  182
            A GD+ +++  ++ ++    R G  + +     R +    LT RET+++   A GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA---TLTHRETDVVLGAARGLDNVS  176

Query  183  IAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETGLV  223
            IA+ +F+S ATVKTH+ R ++KL+ RDR Q+V  A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

361) AMIS_41450 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 106/217 (49%), Positives = 156/217 (72%), Gaps = 4/217 (1%)

Query  5    VRVLLVDDQELVRAGLRALLERDPELTvvgeaadgdtavavaaaeRPDVVLMDLHMPGTS  64
            + V+LVDDQ ++RAGLR++LE D+ + V+GEAADG +A AV  + RPDVVLMDL+MP   
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVDAIRRITADPDMAAVRVVALTTYGTDEHLFAAIRAGAAGFLLKDSRPEELRSAVRLVA  124
            GV+A   + ADPD+ AVR++ LTT++ DE+++AA+RAGA GFL K + +E L +AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGDALLSPAVTRRVMDAAVGAAHRGVDT---TRLAVLSDRERDVLAEIAVGLANLEIAAK  181
             GD+ LS++ ++ V+      ++ + D    +R A L++RE DV+   A GL N+ IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LHLSHATVRTYVSRLLTKLDARDRAQLVVLAYETGLV  218
            L +S ATV+T ++R +TKL+ARDR+QLV +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

362) B737_7125 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 104/217 (48%), Positives = 158/217 (73%), Gaps = 1/217 (0%)

Query  1    MIRVMIVDDQEMIRVGLRTMLEAHPDIEVaaeagdgllalrllaKTPVDVVLMDIRMPGI  60
            MI V++VDDQ MIR GLR +LE +++I V +EA+DG  A+ ++  +  DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVETTRRIRRGHPAEEVRIVVLTTFDHDENVFAALRAGANGFLGKGVGPAELTTSILEV  120
            DGV +T  +R +   + VRI+VLTTFD DE+V+AALRAGA+GFL+K+ ++  L +++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aagggaltpaataalIDHVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAA  180
            A G+ +L+++A+ +++ ++ R + S  + E+     TLT RE ++V +   GLDN  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  LMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI  217
             + +SP TVKTH NRAMTK+ ARDR+QLV++AFR+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

363) RAM_37160 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 104/217 (48%), Positives = 158/217 (73%), Gaps = 1/217 (0%)

Query  1    MIRVMIVDDQEMIRVGLRTMLEAHPDIEVaaeagdgllalrllaKTPVDVVLMDIRMPGI  60
            MI V++VDDQ MIR GLR +LE +++I V +EA+DG  A+ ++  +  DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVETTRRIRRGHPAEEVRIVVLTTFDHDENVFAALRAGANGFLGKGVGPAELTTSILEV  120
            DGV +T  +R +   + VRI+VLTTFD DE+V+AALRAGA+GFL+K+ ++  L +++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aagggaltpaataalIDHVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAA  180
            A G+ +L+++A+ +++ ++ R + S  + E+     TLT RE ++V +   GLDN  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  LMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI  217
             + +SP TVKTH NRAMTK+ ARDR+QLV++AFR+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

364) AMES_7125 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 104/217 (48%), Positives = 158/217 (73%), Gaps = 1/217 (0%)

Query  1    MIRVMIVDDQEMIRVGLRTMLEAHPDIEVaaeagdgllalrllaKTPVDVVLMDIRMPGI  60
            MI V++VDDQ MIR GLR +LE +++I V +EA+DG  A+ ++  +  DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVETTRRIRRGHPAEEVRIVVLTTFDHDENVFAALRAGANGFLGKGVGPAELTTSILEV  120
            DGV +T  +R +   + VRI+VLTTFD DE+V+AALRAGA+GFL+K+ ++  L +++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aagggaltpaataalIDHVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAA  180
            A G+ +L+++A+ +++ ++ R + S  + E+     TLT RE ++V +   GLDN  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  LMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI  217
             + +SP TVKTH NRAMTK+ ARDR+QLV++AFR+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

365) AMED_7234 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 104/217 (48%), Positives = 158/217 (73%), Gaps = 1/217 (0%)

Query  1    MIRVMIVDDQEMIRVGLRTMLEAHPDIEVaaeagdgllalrllaKTPVDVVLMDIRMPGI  60
            MI V++VDDQ MIR GLR +LE +++I V +EA+DG  A+ ++  +  DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVETTRRIRRGHPAEEVRIVVLTTFDHDENVFAALRAGANGFLGKGVGPAELTTSILEV  120
            DGV +T  +R +   + VRI+VLTTFD DE+V+AALRAGA+GFL+K+ ++  L +++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aagggaltpaataalIDHVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLDNAEIAA  180
            A G+ +L+++A+ +++ ++ R + S  + E+     TLT RE ++V +   GLDN  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  LMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI  217
             + +SP TVKTH NRAMTK+ ARDR+QLV++AFR+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

366) AORI_6649 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 157/221 (72%), Gaps = 4/221 (1%)

Query  3    VRVLIADDQSLVRAGFRVLVESEDDMevvgeagdgataaalaeRLRPDVVLMDVQMPGTD  62
            + V++ DDQ+++RAG+R ++E + ++ V+GEA+DG +A A+    RPDVVLMD++MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEGIRRITANPELSAVRVLILTTFDTEEYAVAGITAGASGFLLKNTAPAQLLHGIRVVA  122
            G+ +   + A+P+L+AVR+L+LTTFD +E  +A++ AGA GFL K++ +  L+ ++  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGEELLAPGLTRRLIARLVTPARATVDDTVF---AELTAREREVVALVAEGLSNAEITAR  179
             G+  L++G ++ +++ L   +R++ D  ++   A LT RE +VV   A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LFISMATTKTHVSRALGKLGARDRAQLVAMAYQHGLVSPPE  220
            LFIS AT KTH++RA+ KL ARDR+QLV++A++ GLV+ +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

367) Kfla_1312 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 147/216 (69%), Gaps = 6/216 (2%)

Query  5    VLLADDQAMVRTGFRLILDSEPGLQVVGEAADGEQAVRLARELRPDVILMDIRMPLIDGL  64
            V+L DDQAM+R+G+R IL+ ++G++V+GEAADG  A  + R  RPDV+LMD+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   QATRLLAGPGVADPCRVVVVTTYDIDENVYAALRAGACGFLVKDAGPNLLVEAVRAAADG  124
             AT  L +    ++ R++V+TT+D DE+V AALRAGA GFL K A+++ L+ AV A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ESMVSPSVTARLLEHFTQAAAPRT-----ARPHPLTEREADVVRAVARGRTNGEITEELV  179
            ++ +S++ +  ++ ++ + + + T     AR   LT+RE+DVV + ARG  N  I+ +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  VSLSTVKSHLASAQRKLGLRNRTELAVWAWENRLVG  215
            +S +TVK+HL  A  KL  R+R +L   A  + LV 
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

368) Caci_7415 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 148/221 (67%), Gaps = 9/221 (4%)

Query  6    IRVLVCDDQELVRTGYATIFSAQPDMEVVGESANGLEAVETATRIRPDVVVMDIRMPLLD  65
            I V++ DDQ ++R+G   I+  ++++ V+GE+A+G  A       RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIQATRRL-AGPDVADPPKVLVVTTFNVDAYVYDAFRAGASGFLLKDAPPAEMVNGVRTV  124
            G+ AT  L A+PD+ ++ ++LV+TTF+ D  V  A+RAGA GFL K A +  ++ +V +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  125  ARGESLLAPAVTRTLIGRFAERLRPGDPARAAREAVTR--TLTPRELEVFELIAEGLSNA  182
            A+G++ L+++ ++T+++ +  R R++       E ++R  TLT RE +V    A GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDV----ELIARTATLTHRETDVVLGAARGLDNV  175

Query  183  EIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL  223
             IA  LFI+P TVKT ++R +TKL+ RDR Q V +A+R GL
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

369) Npun_F1776 in NC_010628


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 138/208 (67%), Gaps = 8/208 (3%)

Query  1    MIQILLVDDQHLIRQGLKSMLESNAEIQVIGEAENGQRALEQIPALQPDIVLMDVRMPVM  60
            MI+++LVDDQ +IR GL+++LE +A I+VIGEA +G+ A+  I + +PD+VLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVATTKAI--AQQYPDVKVLVLTTFDDDEYVFQAMRVGAKGYLLKDTEPDELMLAIRSV  118
            DGV++T A+    +   V++LVLTTFD+DE V+ A+R GA G+L K ++++ L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  YKGQTLLGPGLFEKALipipvpvpsvepppeL----AQLTPRELDVLRLIASGANNREIA  174
             KG+T L++G   K++++            EL    A LT RE DV+   A G +N  IA
Sbjct  120  AKGDTSLSAGA-AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  ESLFLSENTVKNYVTNILSRLSLRDRTQ  202
              LF+S  TVK  +   +++L  RDR Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

370) Rxyl_0160 in NC_008148


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 143/217 (66%), Gaps = 14/217 (6%)

Query  7    VRLLICDDHPVVRAGLRGMLAGEQDLEVAGEAANGREAVELARSLRPDLVLMDLRMPEMD  66
            + +++ DD++++RAGLRG+L  + ++ V GEAA+GR A  + R+ RPD+VLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GVAATE--RILAELSQTRVLVLTTYDSDADILRAVEAGASGYLLKDAPREELFAAIRAAM  124
            GV+AT   R  ++L+  R+LVLTT+D+D ++L A+ AGA G+L K A  E L+AA+ A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGESPLDP----AVASRLMRRVRTPPE-------NALSGREIEVLDLVAQGASNREIARQ  173
             G+++L +    +V S L RR R++ +        +L+ RE +V+   A+G  N  IAR+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  174  LWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII  210
            L IS +TVKTHL +   KL   DR   V+ A++ G++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

371) SCE126.07c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (474),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 153/221 (70%), Gaps = 11/221 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVETTSRICVDP--NAPKVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAAIRSVH  120
            GV +T+ +  DP  NA ++L+LTTFD DE  ++AL+AGA GF+ K   +  L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPATGQEPRQKEL----QRLTEREREVMVLVAQGMSNGE  176
             GD+ +++++++ ++    + L   G+ + + EL      LT+RE +V++  A+G+ N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV  217
            IA  L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

372) KSE_24870 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 102/224 (46%), Positives = 151/224 (68%), Gaps = 4/224 (1%)

Query  3    IRVLIVDDQAMVRAGFAALLNAQSDIDVVGDAADGRQAVEASGRTHPDVVLMDVRMPEMD  62
            I V++VDDQAM+RAG+ ++L+ +++I V+G+AADGR A      ++PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAARRLLDPPPGTAHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRV  122
            G+ A+  L   P    +  R+L+LTTFD D+ V  ALRAGA GFL K A +  LIAAV  
Sbjct  61   GVGATAALRADP--DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VAAGDALLAPSVTRRLIadfarnrpaprrdp-rlrlnGLTPRETEVLELIARGLSNQEIA  181
            VA GD+ L+++ ++ +++D+ R   ++       R   LT RET+V+   ARGL N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  182  AHLVLAEQTVKTHVGRILGKLDLRDRAQAVVLAYESGLVQPGER  225
             +L ++  TVKTH+ R + KL+ RDR+Q V +A+ SGLV+ +E+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

373) RER_29160 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 92/208 (45%), Positives = 145/208 (70%), Gaps = 9/208 (4%)

Query  1    MITVALADDHATIRSGLAMILRQHDDIDVVAEAGDGASAITVTRTHQPDVVLMDVRMPGT  60
            MI V L DD+A IR+GL  IL ++ +I V++EA+DG SA++V R  +PDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEAT---RQIIGTTRSRVLVLTTFDLDEYVFAALRAGASGFLLKTATADELTNAIRNV  117
            DG+ AT   R   +    R+LVLTTFD DE V+AALRAGA GFL K+A ++ L  A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGDAVLAPRAARALIGEFVQRAPKPTEPLGL----SELTDREREVLALLGTGMSNAELS  173
            A GD+ L++ AA+++++++ +R+  +T+ + L    + LT+RE +V+   + G+ N  ++
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATD-VELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  RELGVGAPTVKSHVSRVLSKLHLTSRVQ  201
            R+L ++++TVK+H++R ++KLH   R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

374) AORI_2824 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 152/220 (70%), Gaps = 7/220 (3%)

Query  8    IGVLLVDDEQLIRAGLRAIVASEPDLEVVGEASDGAEVPGLVSRFRPDVVLMDVRMPSVD  67
            I+V+LVDD+ +IRAGLR+I+  ++++ V+GEA+DG    +++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIRATTHLMSTMD-NPPKVIVVTTFENDDYVYDALLAGASGFLLKRAKPEEIVAAIRTVA  126
            G+ AT+ L +  D N+ +++V+TTF+ D+ V  AL AGA GFL K A +E ++AA+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  AGESLLFPAAIRRLAAQQANRGP----LDGLA-GAGLTERESEVLRLMAGGLSNVEIAGE  181
             G++ L ++A + + ++   RG     ++ +A  A LT+RE++V+   A GL NV IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LYLGVQTVKTHVGNVLAKLGARDRTQAVIKAYDTGFVTPA  221
            L+++  TVKTH+   ++KL ARDR Q V  A+ +G+V  A
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

375) RHA1_ro06478 in NC_008268


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 144/217 (67%), Gaps = 9/217 (4%)

Query  3    IADDQAMVRQGFGALLASQPDISVIGDAPDGVVAVSEVRRLRPDVVLMDVRMPEMNGLDA  62
            + DDQAM+R G+ ++L  +++I VIG+A+DG  A + +R  RPDVVLMD+RMP ++G++A
Sbjct  6    LVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGA  64

Query  63   ARIILSAGFD-PPVRVLMLTTFDVDDYVYEALSIGASGFMLKDAPAEELIRAVRVVADGE  121
            +   L A+ D  +VR+L+LTTFD D+ V  AL  GA GF+ K A +E LI AV  VA G+
Sbjct  65   T-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  122  ALLAPTVTRRLIADVTSRRSTARRKPAAL----SALTPREREVLELIARGMSNTEIAERL  177
            + L++  ++ +++D+  RR         L    ++LT RE +V+   ARG+ N  IA  L
Sbjct  124  TSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  178  FVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLVT  214
            F++  TVKTH+ + ++KL+ RDR+Q V +A+ SGLV 
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

376) BN6_54360 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 150/221 (68%), Gaps = 7/221 (3%)

Query  3    IRVLVCEDQELVRAGYNTIFSAQPDMEVVGEAADGRRAVEEALRLRPDVVVMDIRMPILD  62
            I V++ +DQ ++RAG   I+  ++++ V+GEAADGR A       RPDVV+MD+RMPILD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRL-AGPGVGTPAKVLMVTTFNVDEYVYEALKAGASGFLLKDAPPAELIKGVRTV  121
            G+ AT  L A+P++  + ++L++TTF+ DE V  AL+AGA GFL K A +  LI +V +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AAGESLVAPAVTRALIGHFAERLR-PTDTTHPAREHVRQTLARRELEVLVQIAAGLSNAE  180
            A G++ ++++ ++++++++  R R +TD    AR     TL++RE +V++  A GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART---ATLTHRETDVVLGAARGLDNVS  176

Query  181  IAEKLCITTETVKTYVSRILTKLDLRDRVQAVVLAYRVGLV  221
            IA  L I+  TVKT ++R +TKL+ RDR Q V +A+R GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

377) AORI_4764 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 141/218 (65%), Gaps = 5/218 (2%)

Query  7    IRVLLADDQRLLRHSLAIIIDATPDLVVVGQAEDGTQAVELARRLRPDVVLMDIRMPGQD  66
            I V+L DDQ ++R +L  I++  +++ V+G+A DG  A  + R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GILATKEISARPDLAGTRILVLSMFELDEYVYGALRAGASGFLLKDTEPDELITAVRRTH  126
            G+ AT  + A PDL + RILVL+ F+ DE V +ALRAGA GFL K ++++ LI+AV    
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  SGESLFAPAILTRLIAHY----VTApphhsppppAGLTQREIEILTYVGRGLSNTEIAET  182
             G++ ++++    ++++      +A   +  +  A LT+RE +++   +RGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LTIAVKTVKTHISRLLSKLSARDRAQLVITAYDLGLVA  220
            L I+  TVKTH++R ++KL ARDR+QLV  A+  GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

378) Sfla_3558 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 142/218 (66%), Gaps = 4/218 (1%)

Query  5    VRVLICDDQVLIRTGLATIIDAQPDMEVAGECGDGRTGVELAGKVRPDVVVMDIRMPVLD  64
            + V++ DDQ +IR+GL  I++ ++++ V GE +DGR++  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIAATRLLAGAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G++AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGAALLDPDVTRQLVGRYAARIRPTGGTD---PDIPLTPRELEVLRLIAEGLSNSEIAAS  181
             G + L ++ ++ +V+    R R++ + +       LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLVS  219
            L IS  TVKT ++R +TKL  RDR Q V  A+R GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

379) F750_3166 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (472),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 142/218 (66%), Gaps = 4/218 (1%)

Query  5    VRVLICDDQVLIRTGLATIIDAQPDMEVAGECGDGRTGVELAGKVRPDVVVMDIRMPVLD  64
            + V++ DDQ +IR+GL  I++ ++++ V GE +DGR++  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIAATRLLAGAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G++AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGAALLDPDVTRQLVGRYAARIRPTGGTD---PDIPLTPRELEVLRLIAEGLSNSEIAAS  181
             G + L ++ ++ +V+    R R++ + +       LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLVS  219
            L IS  TVKT ++R +TKL  RDR Q V  A+R GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

380) Strvi_5464 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 144/218 (67%), Gaps = 11/218 (5%)

Query  3    IRILVADDQHLVRAGFRMVLSAESDMEVVAEAADGASALSLARETRPDVCLVDIRMPPPD  62
            I +++ DDQ ++RAG+R +L  ++++ V++EAADG SA+++ R +RPDV L+D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEVTRRLAGGGHPGAPKVVVVTTFDLDEYVYTALSNGASGFLLKDAGPALLTEAVRAAV  122
            G+  T  L ++ +  A +++V+TTFD DE V +AL  GA GFL K A++  L  AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDAMVAPQITLRLLQHFTKARRRGASEP-------AEPLTDREEEVIQGIARGLTNPEI  175
            +GD+ +++  +  ++ ++   RRRG S         +  LT+RE +V+ G ARGL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  176  AAELYIAPSTVKTHLGSVQAKLGLRNRVEVAAWAFRSG  213
            A +L+I+P+TVKTHL    +KL  R+R ++ + AFRSG
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

381) SAV_4681 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 89/222 (41%), Positives = 151/222 (69%), Gaps = 3/222 (1%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTEVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVETTRRICSEP--NPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTAIRSVH  120
            GV +T  + ++P  N+ ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSAGKEPQFKELERLTDREREVMVLVAQGLSNGEIAAR  180
             GD+ +++++++ ++  +     SA     +     LT+RE +V++  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLVRAGGQ  222
            L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

382) Ndas_4922 in NC_014211


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 147/221 (67%), Gaps = 18/221 (8%)

Query  1    MIRVLIADDHPVVRDGLRGAFTAQDDIEVVGEAANGREAVELVGRLAVDVVLMDLRIPVL  60
            MI V++ DD++++R GLRG +  + +I V+GEAA+GR A  ++     DVVLMDLR+P+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGVGAIAVLSRERPD---VRVLVLTTFDSESDVLPAIEAGATGYLLKDASPDELLRGVRA  117
             GVGA A L R  PD   VR+LVLTTFD++ +VL+A+ AGA G+L K A ++ L+ +V A
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VHRGESVLAPTAVRHLMGQVRRPA-----------GQSLSDRELQVLGLVadgasnraaa  166
            V +G++ L++ A + +++++RR +             +L++RE +V+ L A  + +  + 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV-LGAARGLDNVSI  177

Query  167  aR-LFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLLG  206
            AR LFIS A++KTHL++   KL  RDR+  V+ A+R GL+ 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

383) FraEuI1c_4488 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 154/222 (70%), Gaps = 6/222 (2%)

Query  26   IRVLIADDEGLVRAGFRALVEAT--PDLTvvaeaadgvaavRESRRLRPDVVLMDIRMPV  83
            I V++ DD++++RAG+R+++E +    +   A++  + A +R SR   PDVVLMD+RMP+
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR---PDVVLMDLRMPI  58

Query  84   MNGLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRT  143
            ++G+ AT  + AD+   +  ILV+TTFD+DE V+ ALRAGA GF+ K +++E+L+AA+ +
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  144  VAAGDALLAPGVTRRLIAAF-VRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIA  202
            VA GD+ L++G ++ +++ +  R  ++    L + ++TLT+RE  V+   A G  N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  203  QALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLVAPG  244
            + L++S +TVKTH+ + ++KL ARDR+QLV  A+ SGLV  +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

384) Caci_6049 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 100/217 (47%), Positives = 151/217 (70%), Gaps = 1/217 (0%)

Query  1    MIRVLLADDQALVRAGFRALLEVQDgievageaadgaeaHRLAAELAPDVILMDIRMPGT  60
            MI V+L DDQA++RAG+R++LE + GI V GEAADG  A  +     PDV+LMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRLITADEKLSGVRILILTTFELDEYVFEAIRAGASGFLLKDTEPADLLRGLRAV  120
            DG+ AT  + AD  L++VRIL+LTTF+ DE V+ A+RAGA GFL K +++  L+ ++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEALLAPSVTRRLIAEFAVRSKRTGPNPAAEQIKALTEREREVLALVAAGLSNEEIAD  180
            A G++ L+++ ++ +++++  R++ +       +  +LT+RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  RLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL  217
             L +SP T KTH++R+M KL ARDR+QLV +A+ SGL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

385) SFUL_5079 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 142/221 (65%), Gaps = 3/221 (1%)

Query  5    IRAVIADDQMMVRQGFTVLLNAEPDIEVVGQAVNGLDAVAKVDELTPDVVLMDIRMPELG  64
            I  V+ DDQ M+R G+  +L+ +++I V+G+A +G  A A +    PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRI-TAREGSEVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVA  123
            G+ AT  + +  + + V++LVLTTFD DE V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDALLSPNITKRLIVEFSRTA-GAPRAPLKARIGDLTERETEVLSLIAAGLSNAEIAGQ  182
             GD+ LS+  +K ++ ++ R + +A    L AR + LT+RET+V+   A GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LTLAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLVRPAN  223
            L ++  TVKTH+ R + KL  RDR Q   +A+ SGLV  A+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

386) Caci_6963 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 97/224 (44%), Positives = 152/224 (68%), Gaps = 9/224 (4%)

Query  3    VRVLLVDDQPLMLVGL-GILIGDTDDLEVVAQAANGREAVRLVRELHPDVVVMDIRMPGM  61
            + V+LVDDQ+++  GL GIL  +  ++ V+++AA+GR A  ++R  +PDVV+MD+RMP +
Sbjct  2    IDVVLVDDQAMIRAGLRGIL--EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   DGIEATRQATAEPD--PPKILVLTTFDDDEYVYGALRAGASGFLLKSMALDAILDAIRVV  119
            DG+ AT    A+PD  + +ILVLTTFD+DE V +ALRAGA GFL KS   ++++ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AAGDALIAPSVTRRLIADFTAtpttpkphpeplehphQIAQITDREREVLALVGQGLSNA  179
            A GD+ ++++ ++ +++D+          +  +E   + A +T+RE +V+   ++GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLR----RRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  180  EIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESGLVPR  223
             IA  L+IS+AT KTH+ R  +KL+ARDR +L  IAF SGLV R
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

387) Chro_3053 in NC_019695


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 90/208 (44%), Positives = 137/208 (66%), Gaps = 9/208 (4%)

Query  1    MIQILVVDDQSLIRQGLKALLELDPELTVVGEAENGQLALQLAQELRPDVILMDIRMPLM  60
            MI++++VDDQ++IR GL+++LE D+ + V+GEA +G+ A+ + +  RPDV+LMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATREIL--QQLPQTKVLVLTTFDDDEYVKAAIAHGAMGYLLKDTPSEELAIAIHAV  118
            DGV+AT  +    +L   ++LVLTTFD+DE V AA+  GA G+L K + SE L  A++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HKGYTQLGPGIVKKLLVSPLSVTKPTPPPV-----LQELTPRELEILQLIASGANNREIA  173
             KG T L++G  K  +VS L     ++  V        LT RE +++   A G +N  IA
Sbjct  120  AKGDTSLSAGAAKT-VVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  QKLFISEGTVKNHVTNILNRLNLRDRTQ  201
            + LFIS +TVK H+   + +L+ RDR Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

388) RoseRS_3421 in NC_009523


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 89/210 (43%), Positives = 144/210 (69%), Gaps = 6/210 (2%)

Query  1    MIRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGDGRAAIEAVERLRPDVVLMDVRMPEM  60
            MI V+LVDDQ++IR G+  +LE ++++ V+G  +DGR+A+  +   RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTATRELH--RRFPDVGVIILTTFDDDEYIFEGLKAGARGYLLKDISSEEMAEAVRTV  118
            DGV AT  L+    +  V +++LTTFD+DE ++ +L+AGA G+L K   SE +  AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGEALIQPSIARKVVAEFSRLAAGSPPAPERSPLKLPAALTERELDVLKALARGMSNKE  178
            A+G++ + ++ A+ VV+++ R    + +A +   +   A+LT+RE DV+ + ARG+ N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  179  IAAALVITEGTVKTHISNILAKLDVRDRTQ  208
            IA  L I+ +TVKTH++  ++KL+ RDR Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

389) SBI_00409 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 140/218 (65%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQVLVRTGLVTIIDAQPDLEVVGECEDGQAAVDLAGRLRPEVVVMDVRMPVLD  64
            I V++ DDQ ++R+GL  I++ ++++ V+GE  DG++A  +    RP+VV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVPHPVKVLVVTTFNLDKYVYEALRAGASGFLLKEAPPSQLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ D  V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRRLVGTYVARIRPAEDT---SRDIPLTPRELEVLRLIADGFSNSEIAAA  181
             G + L +  ++ +V+    R R+A D    +R   LT RE +V+   A G+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGLVT  219
            L ISP TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

390) SHJG_1104 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 94/223 (43%), Positives = 151/223 (68%), Gaps = 9/223 (4%)

Query  3    IRVVLADDQPLVRAALQMVITDTADVQVVGEAKDGAEAVRLTGELTPDVVVMDIRMPGMD  62
            I VVL DDQ+++RA+L+ ++ D++ ++V+GEA DG  A  +     PDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLITTGA--GATRVVVLTTFDDDDYVYGALRAGASGFLVKDMALDDILAAVRIVA  120
            G+ AT  + +++   A R++VLTTFD+D+ V +ALRAGA GFL K    + ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIKEFADRPTAT----LPQRTELERITDREREVLTLVGKGLSNAEIA  176
             GD+ ++++ ++ ++ ++  R  ++    L  RT    +T+RE +V+   ++GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSIA  178

Query  177  DQLSISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVARSH  219
             +L IS AT KT L R ++KL+ARDR QLV +A+ +GLV R++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

391) SHJGH_0938 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 94/223 (43%), Positives = 151/223 (68%), Gaps = 9/223 (4%)

Query  3    IRVVLADDQPLVRAALQMVITDTADVQVVGEAKDGAEAVRLTGELTPDVVVMDIRMPGMD  62
            I VVL DDQ+++RA+L+ ++ D++ ++V+GEA DG  A  +     PDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLITTGA--GATRVVVLTTFDDDDYVYGALRAGASGFLVKDMALDDILAAVRIVA  120
            G+ AT  + +++   A R++VLTTFD+D+ V +ALRAGA GFL K    + ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIKEFADRPTAT----LPQRTELERITDREREVLTLVGKGLSNAEIA  176
             GD+ ++++ ++ ++ ++  R  ++    L  RT    +T+RE +V+   ++GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSIA  178

Query  177  DQLSISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVARSH  219
             +L IS AT KT L R ++KL+ARDR QLV +A+ +GLV R++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

392) Ndas_1477 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 147/227 (65%), Gaps = 10/227 (4%)

Query  3    VSVLLVDDQPLVRAGFRMILESAPHLSVVGEASDGREAVRATRGLLPDVVLMDVRMPGMD  62
            + V+LVDDQ+++RAG+R ILE A  + V+GEA+DGR A    RG  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRQIVSWARPLGHRVRVLALTTFDLDEYAVEVLRAGASGFLLKDAPPAELVSAVEV  122
            G+ AT  +  +A P  + VR+L LTTFD DE  +  LRAGA GFL K A +  L++AVE 
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  123  VADGAAAISPAVLNRLLDRFAPLLPSASPATE----PAEDTLTAREHEVLRLLARGWSNA  178
            VA G +++S++  + ++   + L   + +AT+    +   TLT RE +V+   ARG  N 
Sbjct  119  VAKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGLVRPGER  225
             IA +L ++ +TVK+H+   +TKL+ RDR Q V  A+  GLV  +E+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

393) Sros_5619 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 153/219 (70%), Gaps = 3/219 (1%)

Query  1    MIRVLVADDQALLRGSFRVLVDTAPDlttvgeagtgveavglaRSERPDVVLMDVRMPEM  60
            MI V++ DDQA++R+++R +++ A ++  +GEA+ G  A ++ R+ RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRICGSADTAGVRVLMLTTFDLDEYVYAALRAGASGFLLKDTPPGELLAAIRVV  120
            DG+ AT  + + +D  +VR+L+LTTFD DE V AALRAGA GFL K + +  L+AA+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEGLLAPTVTRRLIAEFAR--RPEPSQPLAGELGGVTGRERDVLALIARGLSNTEIAG  178
            A G+  L++  ++ +++++ R  R+     L +  + +T RE DV+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLRLSLATVKTHVGRLLSKLGARDRAQLVILAYETGLVS  217
            +L +S ATVKTH+ R ++KL ARDR+QLV +A+ +GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

394) Snas_0541 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 149/220 (68%), Gaps = 7/220 (3%)

Query  7    LLVVDDQTLVREALAGLLDAEPEFTVVGQAADGSEVPALARDSDPDIVIMDVRMPDVDGV  66
            +++VDDQ+++R +L G+L+ ++ + V+G+AADG    A+ R+S PD+V+MD+RMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATARLTRERPQ---SKVILLTTFDVDAYVYAGLRAGASGFLLKDSHAATLIAAVHTVAS  123
             ATA L R  P+    ++++LTTFD D  V A+LRAGA GFL K +++ +LIAAV++VA 
Sbjct  63   GATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  124  GNAVLSPWATSRLVSTFApllpeplatpprlK--ALTARERDVLSLTGRGLSNNEIATEL  181
            G++ LS+ A+  +VS +      +       +  +LT RE DV+  ++RGL N  IA +L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  182  GIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGLLRPSE  221
             I+  TVK+HL   MTKL+ RDR + V +A+ +GL+  +E
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

395) Rcas_1142 in NC_009767


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 90/210 (43%), Positives = 146/210 (70%), Gaps = 6/210 (2%)

Query  1    MIRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGDGRAAIEAVERLHPDVVLMDVRMPGM  60
            MI V+LVDDQ++IR G+  +LE ++++ V+G  +DGR+A+  +   +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTATRELR--RRFPDVGVIILTTFDDDEYVFEGLKAGARGYLLKDISSEEMAEAVRTV  118
            DGV AT  LR    +  V +++LTTFD+DE V+ +L+AGA G+L K   SE +  AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGMSNKE  178
            A+G++ + ++ A+ VV+++ R + SA      + ++++ +LT+RE DV+ + ARG+ N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVE--LIARTA-TLTHRETDVVLGAARGLDNVS  176

Query  179  IAAALVITEGTVKTHISNILAKLDVRDRTQ  208
            IA  L I+ +TVKTH++  ++KL+ RDR Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

396) Tbis_0951 in NC_014165


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 93/224 (42%), Positives = 151/224 (68%), Gaps = 9/224 (4%)

Query  1    MIRVFLVDDQELVRTGFRMVLNAQPDIEVVGEAGDGQAAIDALGEVEADVVLMDVRMPRM  60
            MI V LVDDQ ++R+G+R +L+ +++I V+GEA+DG++A+  +    +DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATRRICATP--GAPRVLILTTFDLDEYAFAAIKAGASGFLLKDVPPNELVNGIRVV  118
            DGV AT  + A P   A R+L+LTTFD DE  +AA++AGA GFL K   ++ L+ ++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HSGDAVVAPSTTRRL---LDRFAAHLPDGQ-AGRPELDALTAREREVLILVAKGLSNQEI  174
              GD+ +++++++ +   L R +    D +  +R    +LT RE +V++  A+GL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSI  177

Query  175  AERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLVSPGH  218
            A  L ++ ATVKTHL R ++KL+ RDR+Q +  A+ +GLV+ ++
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

397) SHJG_5317 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 146/218 (67%), Gaps = 14/218 (6%)

Query  8    VVVVDDHTVMRAGVLALLAGEDSIEIVGEAGDGRAALALVERYDPDVALVDLRMPVLDGV  67
            VV+VDD++++RAG+ ++L  + +I ++GEA+DGR+A+A++    PDV L+DLRMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   ATTTEIVARH--PRTRVLILTTYDTDADIERGVEAGAIGYLLKDTTREQLVDAVHAAARG  125
            ++T+ + A       R+L+LTT+D D ++  ++ AGA G+L K +  E L+ AV+A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  126  ETVLAPRVAEKLVARMRRPVHDP-----------LTDRETDVLDAVADGLTNAEIGRRLM  174
            +T L++  A  +V+ +RR  + +           LT+RETDV+ + A GL N  I+R L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  175  IAEATVKTHLLRLFAKLDVNDRTRAVVVALERGLLRRP  212
            I+ ATVKTHL R  +KL+  DR + V +A+  GL+ R+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

398) SHJGH_5081 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 146/218 (67%), Gaps = 14/218 (6%)

Query  8    VVVVDDHTVMRAGVLALLAGEDSIEIVGEAGDGRAALALVERYDPDVALVDLRMPVLDGV  67
            VV+VDD++++RAG+ ++L  + +I ++GEA+DGR+A+A++    PDV L+DLRMP+LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   ATTTEIVARH--PRTRVLILTTYDTDADIERGVEAGAIGYLLKDTTREQLVDAVHAAARG  125
            ++T+ + A       R+L+LTT+D D ++  ++ AGA G+L K +  E L+ AV+A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  126  ETVLAPRVAEKLVARMRRPVHDP-----------LTDRETDVLDAVADGLTNAEIGRRLM  174
            +T L++  A  +V+ +RR  + +           LT+RETDV+ + A GL N  I+R L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  175  IAEATVKTHLLRLFAKLDVNDRTRAVVVALERGLLRRP  212
            I+ ATVKTHL R  +KL+  DR + V +A+  GL+ R+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

399) ACPL_4239 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 144/218 (67%), Gaps = 7/218 (3%)

Query  5    IRVLIADDQTLLRDSFRVLLDSTPGFTVTGEAATGRDAARLALAHRPDVVLMDVRMPDLT  64
            I V++ DDQ+++R ++R +L+ + G+ V GEAA GR A  +  + RPDVVLMD+RMP L 
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATELICRQTD--DVRVLILTTFDLDEYVYGALRAGASGFLLKDTTAAGLIAAIRVVA  122
            G+ AT  +  + D   VR+L+LTTFD DE V +ALRAGA GFL K + + +LIAA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEALLAPTVTRRLIaa----ftaapprpapavaaHLTAREQQVLLLIARGRSNTEIAGQ  178
             G++ L++  ++ +++       +A      A +A LT RE +V+L  ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LRLSVPTVKTHVGRLLTKLAARDRAQLVVAAYESGLVT  216
            L +S +TVKTH+ R +TKL ARDR+QLV  A+ SGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

400) Bfae_11600 in NC_013172


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 101/221 (46%), Positives = 153/221 (70%), Gaps = 4/221 (1%)

Query  8    VRVLIVDDQSMIRGGFEALLGAQEGIEvvgtaadgagivdvvaRTRPDVVLMDIRMPHVG  67
            + V++VDDQ+MIR+G+ ++L  + GI V+G AADG +   V+  +RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GLEATREVLEMPG-AVPRIIMLTTFDADEYVFAALRAGASGFLLKDSTPEELVHAVRVVA  126
            G+ AT  +   P+    RI++LTTFD+DE V+AALRAGA GFL K + +E L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  DGQSLLAPPVTRALIADFVARPERSAGAD--ASLAVLTERELEVLRGVARGLANREIAAE  184
             G++ L++  ++++++D+  R   +++ +  A  A LT+RE +V+ G ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  LVMAEQTVKTHVSRILGKLMLRDRTQLVVAAYESGLVIPGE  225
            L ++  TVKTH++R + KL  RDR QLV  A+ SGLV  +E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

401) CMM_1271 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 97/223 (44%), Positives = 148/223 (67%), Gaps = 9/223 (4%)

Query  8    VRVLIVDDQALVRMGFRMVLDAEPGIEVVGEAADGRAAVERTGALAPDIVLMDVRMPGMD  67
            + V++VDDQA++R G+R +L+ ++GI V+GEAADGR+A     +  PD+VLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIDATAEIVARH--PATRVIVLTTFDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVA  125
            G++ATA + A     A R++VLTTFD DE  +A+LRAGA GFL K + +E L+ A+ AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  DGDAAISPRVTRRMIELLGPTMPatggaagtgegaaDPRLRPLTARELEVLTALAEGLTN  185
             GD+++S+  ++ ++  L     ++ +          +R   LT RE +V+ + A GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI------ARTATLTHRETDVVLGAARGLDN  174

Query  186  QEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCGLV  228
              IA  L++S +TVKTH+ R ++KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

402) AORI_1270 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 145/221 (66%), Gaps = 8/221 (3%)

Query  1    MIRVVLADDEAMIRAGVSAILAADAGIEVVAEAEDGRAAVEQTRATRPDVVLLDIRMPVM  60
            MI VVL DD+AMIRAG+ +IL  DAGI V++EA DGR+A    R++RPDVVL+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLKAAEEIR--RLLPDVGVIMLTTFGEDAYIERALGLGASGFLLKSGDPRELLGGIHAV  118
            DG+ A+  +R    L  V +++LTTF+ D  +  AL  GA GFL KS+D+  L+++++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGAAFLSPKVAQRVIARFSGNQVSRAEEAKALIGK---LTPREQEVLALLGSGLSNADI  175
            A G + LS+  A+ V++ +   + +R+     LI++   LT RE +V+   + GL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  176  AAKLFVVEGTVKAYVSTILNRLGARNRVQAAITAYEAGLVG  216
            A  LF+  +TVK+ ++  + +L AR+R Q    A+ +GLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

403) SACE_0956 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 152/218 (70%), Gaps = 10/218 (4%)

Query  1    MLLVDDEPLIRTGLRAVIEAEDDLRIVGEAADGAEVLPMVRRLRPDVVLMDVRMPAVDGI  60
            ++LVDD+++IR+GLR+++E + ++R++GEAADG   ++++R  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   RATTAV-LDAVADPPAIIVITTFEHDDHVYDALRAGASGFLLKRTRPEEIVQAIRIAAQG  119
             AT+A+  D+  ++  I+V+TTF+ D++V  ALRAGA GFL K + +E ++ A+   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  ESLLFpaairrlva--------rrapaarrpapTLTEREAEVLRLMAKGLSNTEIAGELF  171
            ++ L ++A + +V+                 ++TLT+RE++V+   A+GL N  IA +LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  172  IGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFVSPA  209
            I+  TVKTH+   ++KL ARDR Q V +A+ SG+V+ A
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

404) AMIS_65220 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 89/217 (42%), Positives = 148/217 (69%), Gaps = 3/217 (1%)

Query  1    MIRVALADDHELVRMGLRALIDREDDMTVVGEASGGLEAIQLLRREGVDVLLLDVRMPGI  60
            MI V L DD+ ++R GLR++++ + ++ V+GEA++G  A+ ++R    DV+L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIETLRRIQADPAIAGTPVIVVTTFEMDRYVFLALQAGAAGFILKDAVPHELARAIRVV  120
            DG+ +   ++ADP + +  ++V+TTF+ D  V+ AL+AGA GF+ K A ++ L  A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  SAGEAMLSPSVTRRVISLFAQ--QTAVDPALDPSLDELTEREREMVAWVATGFSNEEIGA  178
            + G++ LS++ ++ V+S + +  ++A D  L +    LT+RE ++V   A G+ N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ALFVSPATVRTHVSRAMLKLGARSRAQLVVIAVRVGL  215
             LF+SPATV+TH++RAM KL AR R+QLV IA R GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

405) NIES39_O03890 in NC_016640


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (466),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 137/207 (67%), Gaps = 6/207 (2%)

Query  2    MIRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAENGKVAVELALKLKPDVVLMDVRMPIM  61
            MI V+LVDDQ++IR GLR++LE  +++ ++GEA +G+ A  +    +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   DGVAAMRSLAEQQ--PEIKVLVLTTFDDDEYITQAMESGAKGYLLKDTPSDELAQAIRAV  119
            DGV+A  +L  +     +++LVLTTFD+DE +  A+ +GA G+L K + S+ L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  YQGYTQLGPGLFEKVMAA---KYKPSRDEPLPGYLQDLTPRELEVLRLIGKGYSNREIAQ  176
             +G T L++G    V++    + +++ D  L +    LT RE +V+   ++G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELFISERTVKNHVSSILSRLNLRDRTQ  203
            +LFIS  TVK H++  +++L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

406) SACE_7063 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 145/219 (67%), Gaps = 6/219 (2%)

Query  1    MVRVVLADDEAVIRAGVRAILSSDPEIEVVAEAADGRAAVDLVHRHRPDVAVLDIRMPVL  60
            M+ VVL DD+A+IRAG+R+IL  D+ I V++EAADGR+A  +++  RPDV ++D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEQLRG----TGTAVLIMTTFDEDDYITRALHGGASGFLLKTGDPRELVLGVRAA  116
            DG++AT  LR+     +  +L++TTFD D+ +  AL++GA GFL K++D+  L+ +V A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  ADGGAYLSPPVARRVIRDL-GGPRLSREVAARNRIEGLSERERQVLALVGAGLSNAEIAR  175
            A G++ LS+  A+ V+ DL    R + +V    R   L++RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RVHVVEGTVKAYVSAILNHLGFRNRVQAAILAYEAGLVD  214
             + +  +TVK+ ++  +  L  R+R Q   +A+ +GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

407) BN6_23870 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 147/220 (67%), Gaps = 6/220 (2%)

Query  11   VVLADDQDLVRAGFRVILGTEDDIEVVGEARDGLAAVEVVERLRPDVVLMDVQMPGVDGL  70
            VVL DDQ ++RAG+R IL  + +I V+GEA DG +A  V+   RPDVVLMD++MP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  71   EATRRILGPAGAEHPIKVVILTTFDREDYLFEALRAGASGFLLKNSSPEDLVESVRVVAR  130
             AT   L +    +++++++LTTFD ++ ++ ALRAGA GFL K++ +E L+ +V  VA+
Sbjct  63   GATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  131  GDALLAPEVTRRVIar----fatpgpptraarpaELTEREFEVLVHLARGASNAEIASAL  186
            GD+ L++  ++ V++       ++      AR A LT+RE +V++  ARG  N  IA  L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  187  YLGETTVKTHVSRILVKLRLRDRTHAVVYAYENGVVAPGH  226
            +++ +TVKTH++R + KL+ RDR + V  A+ +G+V  ++
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

408) SCAB_42051 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 91/223 (41%), Positives = 144/223 (65%), Gaps = 8/223 (3%)

Query  3    IRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVRRVRELSPDVVLMDIRMPELN  62
            I V++ DDQ M+R G+  +L+  ++I V+GEA +GR A   +R   PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATREIVASDD--GAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  120
            G+ AT  + A  D  + ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGEALLAPSVTKRLITEFSKLVQAPRPSAATQLA--YGELTDRETEVLVLIAQGLSNSEI  178
             G++ L+++ +K +++++ +     R+++  +L    + LT+RET+V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  179  AERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG  221
            A  L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

409) BLASA_1392 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 96/213 (46%), Positives = 145/213 (69%), Gaps = 6/213 (2%)

Query  3    IRVLVADDQDIVRAGLCMILDAQPGITVVGEAADGRRAIAMARSLRPDVCLLDIRMPDVD  62
            I V++ DDQ ++RAGL  IL+ ++GI V+GEAADGR A+A+ R+ RPDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRQLAGADIADPLAVVVITTFDLDEYVYGALKAGARGFLLKDAGAELLTQAVHAAA  122
            G+ AT  L +    +++ ++V+TTFD DE V +AL+AGA GFL K A++E L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDALIAPNITARLLSSFANSRSRSVPP----EPVEPLTPREEQVLLAAARGRTNSEIGD  178
            +GD+ +++  +  ++S +   R+RS            LT RE +V+L+AARG  N  I+ 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELSISLSTVKTHIAALMRKLNARNRVEIVMWAY  211
            +L IS +TVKTH+   M KL+AR+R ++V  A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

410) SCH10.31c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 103/225 (46%), Positives = 148/225 (66%), Gaps = 6/225 (2%)

Query  19   IRLLVVDDQYLVRTGLATLLRAAPGMEVVGEASDGAEAVVLAARTRPDVVLMDIRMPGLT  78
            I +++VDDQ ++R+GL  +L   +G+ V+GEA+DG  A  +   +RPDVVLMD+RMP L 
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  79   GIQATERILAQAVDPAPRILVLTTFDLDEYVYGALRAGASGFLLKDAGPERLLAAVTAVH  138
            G+ AT  + A++   A RILVLTTFD DE V +ALRAGA GFL K A++E L+AAV AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  139  GGDALFAPAVTRRLVEAFTRMTdtgradppdagppppalttltgrEAEVLQLVGRGLSNA  198
             GD+ ++++ ++ +V  + R        ++      +  +TLT RE++V+   +RGL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG-----RSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  199  EAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGLVTPG  243
              A  LFIS ATVKTHLNR+MTKL    R+Q V +A+ +GLV  +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

411) Psed_6227 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 150/219 (69%), Gaps = 4/219 (1%)

Query  1    MIRVLVVDDQAMVREGFAALLDAQPDMEVVGTAGDGRAALPVAATRHPDVVLMDIRMPEM  60
            MI V++VDDQAM+R G+ ++L+ ++++ V+G A+DGR+A++V    +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEAARLLLAQPD--PPKVVVLTTFDLDDYIFDALAAGASGFLLKHAPATDLLHAVRVV  118
            DG+ A+  L A+PD  + +++VLTTFD D+ ++ AL AGA GFL K A +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEALLAPEVTRRLIAHFVaarpdpaaagprpdrlaplTDRETEVLGLVARGLSNTEIA  178
            A G++ L++  ++ +++++   R  +A+      R A LT+RET+V+   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  DALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV  217
              L ++  TVKTH++R   KL  RDR+Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

412) Strop_1796 in NC_009380


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 154/220 (70%), Gaps = 8/220 (3%)

Query  11   IRILLADDHHLVRTGFRVILEVESDMHVVGEAADGERAVSMAGALRPDVVLMDVEMPRVD  70
            I ++L DD+ ++R+G+R ILE +++++V+GEAADG  A ++  + RPDVVLMD+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  71   GLEATRRIVADADRSNGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVV  130
            G+ AT  + AD+D  N+  +L+LTTFD D+ ++AALRAGA GFL K++ +E+L+AA+  V
Sbjct  61   GVGATAALRADPD-LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  ARGEGLIAPELTRRVIAAFARPGGEPTTTAVAL----SDLTPREHEVLVLVASGASNAEI  186
            A+G+  +++  ++ V++ + R G   ++T V L    + LT RE +V++  A G  N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  187  AANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV  226
            A +L ++ ATVKTH++R ++KL  RDR Q V +A+  G+V
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

413) VAB18032_10190 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 98/224 (44%), Positives = 155/224 (70%), Gaps = 16/224 (7%)

Query  17   VRILIVDDDALVRAGLSMILGGTPDLTVVGEAADGSEVMAATAACRPDVVLMDIRMPRLD  76
            + +++VDD+A++RAGL  IL + +++ V+GEAADG    A   + RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  77   GLAATELLRALP--KPPEVLVLTTFDADEHVLRALRAGAGGFLLKDTPPAEIvravrrva  134
            G++AT  LRA P  ++  +LVLTTFD+DE+VL ALRAGA+GFL K + +  ++ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  135  aGEATLSPTVTRTLIAHVTAGTAADPRRDRAA---HLL---AGLTERERAVAVALGRGRT  188
             G+++LS+  ++T+++++        RR+R+A   +L+   A LT+RE  V ++ +RG  
Sbjct  121  KGDTSLSAGAAKTVVSDL-------RRRGRSATDVELIARTATLTHRETDVVLGAARGLD  173

Query  189  NAEIAAELFMSVATVKAYVSRLLTRLDLNNRVQVALLVHDAGLV  232
            N  IA +LF+S ATVK+ ++R +T+L+  +R Q+  +   +GLV
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

414) AORI_7016 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 140/217 (65%), Gaps = 6/217 (2%)

Query  4    VKVLICDDQELVRVGMGMIVTSQDDLTVAGEATNGAEAVEAAEKLRPDLVLMDVRMPVLD  63
            + V++ DDQ ++R G+  I+  + ++ V GEA++G  A       RPD+VLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVAATE--RICRSLPDTRVLMITTFDLDEYAYAALRAGASGFLVKDAPADEILVAIRGVL  121
            GV+AT   R    L   R+L++TTFD DE   AALRAGA GFL K A ++ ++ A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  RGDSMVSPSVTKrlldryladdrdSGES---ARLETLTEREKDVLSLIARGLTNSEIAAK  178
            +GD+ +S++ +K ++      +R + +    AR  TLT+RE DV+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYIGETTVKTHVGRILSKLSLRDRVHAVVFAYESGLV  215
            L+I+ +TVKTH+ R ++KL  RDR + V +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

415) Caci_8412 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 151/220 (69%), Gaps = 8/220 (3%)

Query  21   IRIVLVDDQELLRTGFRMVLNSQPDMAVVGEAGDGQVALDLLTRLQADVVLMDVRMPRLD  80
            I +VLVDDQ ++R+G+R +L+ ++++ V+GEA+DG+ A+ ++   ++DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  81   GVAATREIVVRGERP----RVLMLTTFDLDEYAFTALKAGASGFLLKDVPPPDLLAAIRA  136
            GV+AT    +R++      R+L+LTTFD DE  ++AL+AGA GFL K   +  L+AA+ A
Sbjct  61   GVGAT--AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  137  VHSGEAVVAPSTTRRLLDKFapmlpsesepa-ppelTVLTDREHEVLLLVAQGMSNAEIA  195
            V  G++ +++++++ ++  +     S ++    +  + LT+RE +V+L  A+G+ N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  196  GKLFLSEATVKTHVGRILMKLGLRDRVQAVVLAYETGLVK  235
              LF+S ATVKTH+ R + KL  RDR Q V +A+ +GLV+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

416) KSE_33970 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 97/231 (42%), Positives = 149/231 (65%), Gaps = 13/231 (5%)

Query  3    IRVMLVDDQELLRTGFRMVLQSQGDIEIAAEAGDGQQAVEVLRTAEVDVILMDVRMPRLD  62
            I V+LVDDQ ++R+G+R +L+  G I + +EA+DG+ A  V+R +  DV+LMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVQATRRICLDEHGNPVENAPRVLILTTFDLDEYAFAALKAGASGFLLKDVPPTELVAAI  122
            GV AT  +    +++P  NA R+L+LTTFD DE  +AAL+AGA GFL K   +  L+AA+
Sbjct  61   GVGATAAL----RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  123  RSVHGGDAVVAPTTTRRMIDRFAEVLPTPASTPGSTVL----GPLTDREREVFLLVSQGL  178
             +V  GD+ +++ +++ ++      L   + ++    L    + LT+RE +V L  ++GL
Sbjct  117  EAVAKGDTSLSAGAAKTVVSD----LRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  179  SNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENGLVRAGETP  229
             N  IA  L +S ATVKTH+ R ++KL  RDR Q V +A+ +GLV  +E P
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

417) Kfla_3136 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (465),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 91/217 (42%), Positives = 149/217 (69%), Gaps = 5/217 (2%)

Query  5    ISVVVVDDEPLIRSGLRAIIDAEPDLTVVGEAGDGSEVLPLVRRTGADVVLMDVRMPAID  64
            I VV+VDD+++IR+GLR+I++ ++++ V+GEA+DG   ++++R + +DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIQATRLLLDGLD-PAPRVLVVTTFENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVA  123
            G+ AT  L  + D  A R+LV+TTF+ D+ V  ALRAGA GFL K + ++ +IAA+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  GSESLLFPEAIRGL--ALAHAEQQPRQFTGLARYD-LTEREQEVLRLMAKGLSNAEIATE  180
             +++ L + A + +   L +  + + +   +AR   LT+RE +V+   A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLGVQTIKTHVANLLGKLGARDRTQAVILAYESGFV  217
            L ++  T+KTH+   + KL ARDR Q V +A+ SG+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

418) CMN_01241 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  127 bits (464),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 96/223 (44%), Positives = 147/223 (66%), Gaps = 9/223 (4%)

Query  8    VRMLIVDDQALVRMGFRMVLDAEPGIDVVGEAADGRAAVQRTGELAPDIVLMDVRMPGMD  67
            + +++VDDQA++R G+R +L+ ++GI V+GEAADGR+A        PD+VLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIAATAEIVARH--PATRVIVLTTFDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVA  125
            G++ATA + A     A R++VLTTFD DE  +A+LRAGA GFL K + +E L+ A+ AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  DGDAAISPRVTRRMIELLgptmpptggaagtgegaaDPRLRPLTARELEVLTALAEGLTN  185
             GD+++S+  ++ ++  L     ++ +          +R   LT RE +V+ + A GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI------ARTATLTHRETDVVLGAARGLDN  174

Query  186  QEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCGLV  228
              IA  L++S +TVKTH+ R ++KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

419) AMIS_53890 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 106/217 (49%), Positives = 146/217 (68%), Gaps = 7/217 (3%)

Query  3    ITVVIADDQRMVRAGLRMVIETEPDMTVIGEAGDGAEAVALTRRMRPDVVLMDIAMPRQD  62
            I VV+ DDQ M+RAGLR ++E ++++ VIGEA+DG  A A+ R  RPDVVLMD+ MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   gltatgtllagaD--PPRIIVLTTFDTDENLHRALRAGASGFLLKVSSPEHLITAIRVVA  120
            G+ AT++L A++D  + RI+VLTTFD DE++  ALRAGA GFL K + +E LI+A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDSLLDPAVTTRVIAAFAGRPGPVPPPEL----GDLTPRETDVLRLIARGMSNGEIAAA  176
             GD+ L ++ +  V++ +  R  +    EL    + LT RETDV+   ARG+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LTVGEATVKTHVARVLMKLGLRDRVQAVVYAYESGLV  213
            L ++ ATVKTH+ R + KL  RDR Q V  A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

420) GPOL_c05490 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 144/217 (67%), Gaps = 16/217 (7%)

Query  10   ISIVVVDDHPVVRDGIRGMLEREPGMSVIGEAADGAEALTTIARLHPDVVLMDLRMPELD  69
            I +V+VDD++++R G+RG+LE ++G+ VIGEAADG  A++ I   +PDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GVGAIRVLRAE-NPDAPRILVLTTYDTDTDIRAAVDAGADGYLLKATPradliaavrraa  128
            GVGA   LRA+ + +A RILVLTT+D D ++ AA+ AGADG+L K++    LIAAV   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  129  aGQSVLDPSAAASLMSR--------------NRFEALTERECEVLRAVAGGGTNRQVAAE  174
             G++ L ++AA +++S                R  +LT+RE +V+ + A G  N  +A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LMISEATVKTHLLRLYPKLGVKDRAAAVRVAFERGLI  211
            L IS ATVKTHL R   KL  +DR+  V +AF  GL+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

421) BLASA_1050 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 152/223 (69%), Gaps = 5/223 (2%)

Query  3    VRVLLADDEALVRAGLRMILEAEADLEVVGESADGVEAVALCRQLRPDVALVDIRMPRLD  62
            + V+L DD+A++RAGLR ILE +A++ V+GE+ADG  A A+ R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIQAARRITAEPG-NGTAVVMLTTFDADEHLVEAIRAGATGFLLKSMPREQLVTAVRSAV  121
            G+ A+  + A+P+ N+  +++LTTFD+DE+++ A+RAGA GFL KS   E L++AV +  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  SGDSllapallrrllDDFV--GRagttpaaapgLVLLTPREEEVLRLVARGLSNAEIAAA  179
             GD+ L+++  + ++ D+   GR++T     +    LT RE +V+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LVLGEGTVKTHVARVLAKLGVRDRVQAVVLAYESGLV-RPGSP  221
            L ++ +TVKTH+ R ++KL  RDR Q V +A+ SGLV R+  P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

422) Krad_4263 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 152/216 (71%), Gaps = 3/216 (1%)

Query  16   VLLVDDDALVRAGLRMILSSADDIEVVGEAENGAQAVEGVAAHRPDVVLMDVRMPVMDGL  75
            V+LVDD+A++RAGLR IL  A+ I V+GEA +G  A   + + RPDVVLMD+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  76   TAAKAITERPQ--APSVVMLTTFDLDEYVFQALQAGATGFLLKDTPPRELVAAVRIVAAG  133
             A+ A+   P+  A  +++LTTFD DE V+ AL+AGA GFL K + +  L+AAV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  134  EAMLSPTVTRRLVGHYAADAVNPrrreaaerlttltererevlaCVGRGMSNAEVGKELF  193
            ++ LS+  ++ +V++    + ++   E   R +TLT+RE +V+   +RG+ N  ++++LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  194  MSEATVKTHVSRLLTKLQAHNRVQVAIVAHDAGLLD  229
            +S ATVKTH++R +TKL+A++R Q+  +A  +GL++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

423) liaR in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 140/218 (65%), Gaps = 14/218 (6%)

Query  1    MTRVLVVDDHPVVRGGLVGWLAAQPDLDVVAEASDGLEALAAVAEHRPDVVLMDLRMPRM  60
            M  V++VDD++++R+GL G L  ++++ V++EA+DG  A+A +   RPDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTATG--RIAAAHPDVRVLVLTTYDTDADIVRAVEAGATGYLLKDTPLPQLADAVRAA  118
            DGV AT+  R  +    VR+LVLTT+D D +++ A+ AGA G+L K +    L  AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGETVLAPPVAARLMSRMR-----APAVE------APTARELQVLAGVSRGLTNAEIGR  167
            A+G+T L++  A  ++S +R     A  VE      + T RE +V+ G +RGL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ELFIGEATVKTHLLRVFAKLGVDDRTRAVLVAVERGLL  205
            +LFI+ ATVKTHL R  +KL   DR + V +A   GL+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

424) Sked_29940 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 133/205 (65%), Gaps = 15/205 (7%)

Query  43   GIVGMLGVESDIEVVGEAEDGRQAVDLARTLSPDVVITDLRMPVLDGVGATREIVALP--  100
            G+ G+L  +++I V+GEA DGR A  + R   PDVV+ DLRMP+LDGVGAT  + A P  
Sbjct  16   GLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL  74

Query  101  GTVRVVVLTTYETDGEILRAVEAGATGYLLKDTPRAELVAGIREAARGQTVLTPSVATRL  160
             +VR++VLTT++ D E+L A+ AGA G+L K +    L+A++   A+G+T L+++ A  +
Sbjct  75   NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTV  134

Query  161  VS------------QVGSRADRLTPREVEVLRAVARGLSNAAVGHELFISETTVKTHLIR  208
            VS            ++ +R+  LT RE +V+ + ARGL N +++++LFIS +TVKTHL R
Sbjct  135  VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNR  194

Query  209  AFGKLGVNDRTHAVTVATDRGLLGQ  233
            A  KL   DR + V++A   GL+ +
Sbjct  195  AMTKLHARDRGQLVSIAFRSGLVNR  219

425) SCAB_27841 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 139/219 (64%), Gaps = 13/219 (5%)

Query  17   ISVLVVDDHPVVRDGLRGMFESAPGFRVLGEAANGTEAVELTAALDPDVVLMDLRMP---  73
            I V++VDD++++R GLRG++E A G+RV+GEAA+G  A  +  +  PDVVLMDLRMP   
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  74   GGGGVEAIRELTRRAARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTAVRAA  133
            G G+  A+R         ++LVLTT+D D + L+A+ AGA G+L K A  E L++AV A 
Sbjct  61   GVGATAALRA-DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  134  AEGRTVLSPAVASRLVTAVRSPRTPGSE--------PLSAREREVLALVARGTANREIAR  185
            A G T LS++ A  +V+ +R    ++++         L+ RE +V+   ARG  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  ELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGILG  224
            +LFIS ATVKTHL +  +KL  +DR+  V+ A+  G++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

426) AARI_07110 in NC_014550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 147/212 (70%), Gaps = 11/212 (5%)

Query  1    MKVLIVDDHATVRMGIRLVLQAAEDLEVVGEAADGRSAISMARALSPDVILMDLRMPVLD  60
            + V++VDD+A +R G+R +L+ A ++ V+GEAADGRSA+++ R+  PDV+LMDLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GIEATKALHG-----SCRVVVLTTFDDDQYLFGALQAGAHGFLLKSAEPQAIIMGVRAAG  115
            G+ AT AL++     + R++VLTTFD+D+ +++AL+AGA+GFL KSA+++++I +V A +
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  116  RGESVLDPQVTSRILA--RALAPEPGTAKL---PDGLTGREREVLDGLAEGLSNPQLAQR  170
            +G++ L +  +  +++  R  +  +    L      LT RE +V+ G A GL N  +A+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  171  LGIGQSTVKTHVSQVLAKLGVSTRLQAAKIAY  202
            L I+ +TVKTH+++ ++KL    R Q   IA+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

427) Bfae_25060 in NC_013172


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 148/219 (68%), Gaps = 4/219 (1%)

Query  1    MTRVGLIDDDSLVRAGLAMILGADPGIEVVGQGDDGAEAVTLVQKHRPDVLLMDVRMPKL  60
            M  V L+DD++++RAGL  IL  D+GI V+G++ DG  A ++++  RPDV+LMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATKAVSDLP--SPPKIIMLTTFDMDEYVFQALEAGASGFLLKDTPPQELARAVHVV  118
            DG++AT A+   P  ++ +I++LTTFD DE V+ AL AGA GFL K + ++ L  AV+ V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGDAMLSPTITRRMLSHFSEANPGSRQ-DRHPGLEQLTDRETEVLGAVGAGLSNAQIGM  177
            A GD+ LS+  ++ ++S++     ++ + +  +    LT+RET+V+ + + GL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLFMSEATVKAHVSKIFAKLDCTNRVQIAIIAHEAGLSD  216
             LF+S ATVK+H+++  +KL+  +R Q+  IA  +GL +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

428) SBI_04815 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 89/220 (41%), Positives = 144/220 (66%), Gaps = 14/220 (6%)

Query  6    VRVIVVDDHTVMRAGVVALLAGEDGIEIVGEAGDGRAALELVERYDPDVALVDLRMPVLD  65
            + V++VDD++++RAG+ ++L  + GI ++GEA+DGR+A+ ++    PDV L+DLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVGATAEIVARH--PRTRVLILTTYDTDQDIERGVEAGAIGYLLKDTTREQLADAIRSAA  123
            GVGATA + A       R+L+LTT+D D+++  ++ AGA G+L K +  E L  A+ + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  RGETVLAPRVAEKLIARMRRPVQDP-----------LTARETDVLNAVADGLTNAEIGKR  172
            +G+T L++  A  +++ +RR  + +           LT RETDV+ + A GL N  I++ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLLRRP  212
            L I+ ATVKTHL R  +KL+  DR + V +A+  GL+ R+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

429) Xcel_0239 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 91/224 (41%), Positives = 146/224 (66%), Gaps = 2/224 (0%)

Query  1    MITVVLADDHELVRSGLRLILEAQDDIQVLSEAADGEAALREVRRLRPDVALLDIQMPRM  60
            MI VVL DD+ ++R+GLR ILE + +I+V++EAADG +A+  +R  RPDV L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGLEVARAVVADTTAHT-RVVMLTTFDRDDYLYDALVAGASGFMLKSSPRAHLLHAVRTA  119
             G+  + A+ AD   ++ R+++LTTFD D+ +  AL AGA GF+ KS+    L+ AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQLAGLSPRERDVLQALARGESNAEIAG  179
            A G++ L ++ ++ +V    RR R+    +  A+ A L+ RE DV+ + ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  TLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGLVVPGDNA  223
             LF++ +TVKTH+   + KL  RDR Q V +++  GLV  ++++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

430) FraEuI1c_2398 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (463),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 142/218 (66%), Gaps = 5/218 (2%)

Query  7    VVIVDDQALVRSGFRMILAADGIDVVAEAADGGQAVDAVRRTCPDVVLMDIRMPEMDGLE  66
            VV+VDDQA++R+G+R IL   GI V++EAADG  A   +R + PDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  67   ATRRILGGRPIDAAAAPRVIILTTFDLDRYVYAALTAGASGFLLKDVSPEHLVAAVRLVR  126
            AT  +   R+     A R+++LTTFD D  V AAL AGA GFL K   +E L+AAV  V 
Sbjct  64   ATAAL---RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  MGDALLAPAITRRLVE--RFASRDSGAARLHRDLSALTPRELEVLEFLAQGLSNAELAAR  184
             GD+ L+++ ++ +V   R  +R +    L    ++LT RE +V+   A+GL N  +A  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  FQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGLIT  222
            + +S ATVKTH+ R ++KL+ RDR+Q V +A+ +GL+ 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

431) Sros_3519 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (463),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 99/224 (45%), Positives = 141/224 (63%), Gaps = 10/224 (4%)

Query  4    IRVMLVDDQELLRASLRTVLSADERIEVTHDVANGSDAIEVVRRHRLDVVLMDIRMPRMD  63
            I V+LVDDQ ++RA+LR +L  D  I V  + A+G  A+ V+R  R DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVAATAEIVRIAP---ATRVLMLTTFDDDELVVAAIRAGASGYLTKDVRPAALAQAVCDV  120
            GV+ATA + R  P   A R+L+LTTFD+DE V+AA+RAGA G+L+K   + +L  AV  V
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ASGTSALTPGVAATIL-DLVRQVPIRRTAAL----DGLTPREVEIFGLLARGRSNSEICA  175
            A G ++L++G A T++ DL R+        L      LT RE ++    ARG  N  I  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ELVLSENTVKSHVRAVLQKLDLRDRVHAVIHAYENGLVGRSDLP  219
            +L +S  TVK+H+   + KL+ RDR + V  A+ +GLV R++ P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

432) SCAB_67211 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 101/221 (46%), Positives = 156/221 (71%), Gaps = 5/221 (2%)

Query  3    IRVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAKEERADVVLMDIRMPGTD  62
            I V+L DDQA++R+++R +++ ++++ V+GEA+DG  A  + +  R+DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRLISADPtltrvrvvilttFEVDDYVVQSLRAGASGFLGKGAEPEELLNAIRVAA  122
            G++AT  + ADP L  VR+++LTTF+ D+ V+ +LRAGA GFL+K+A++E L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  GGDALLSPTATKGLIARFLAQPddsadgdrgaarsERLATLTGREREVLVQVAGGLSNDE  182
             GD+ LS+ A+K +++ +       + +  +     R ATLT RE +V++  A GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  183  IAERLEVSPLTVKTHVNRGMAKLGARDRAQLVVFAYESGLV  223
            IA  L +SP TVKTH+NR+M+KL ARDR+QLV +A+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

433) Franean1_3185 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 99/221 (45%), Positives = 144/221 (66%), Gaps = 7/221 (3%)

Query  1    MIRVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGV  60
            MI V+L DDQA++R GLR +++ + ++ VIGEA+DG  A   +   +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATAQITARH--PASRVLILTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNAIRTV  118
            DG+ ATA + A     A R+L+LTTFD D+ V+ +LRAGA GFL K A +  L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGDAVLGPTAARRLVDRFAALP-ADSGSDRAARPEIVHDLTEREREVFLLVARGYSNRE  177
            A+GD+ L++ AA+ +V  +     + ++ +  AR      LT+RE +V L  ARG  N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT---LTHRETDVVLGAARGLDNVS  176

Query  178  IAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLV  218
            IA  L +S  TVK H+ R ++KL+ RDR Q V +A+ SGLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

434) Sked_03540 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 99/224 (45%), Positives = 147/224 (66%), Gaps = 9/224 (4%)

Query  1    MTTVLLVDDQALIRMGLRLVIDSEPDLEVVGEASDGAVALDQVAALAPDVVLMDIRMPGV  60
            M  V+LVDDQA+IR GLR +++ ++++ V+GEA+DG  A+  + +  PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RVVAEHPAVRVLVLTTFDVDEYAFAALRAGASGFLLKSARPEELADAIRTI  118
            DG+ AT   R  ++  AVR+LVLTTFD DE  +AALRAGA GFL KSA +E L  A+ ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ASGSSVVAPRVVRRMLDLFAPHLPGGDDASPARPDEVAPVLRDLTPRETDVLRAVAEGLS  178
            A G + +++   + ++  +  +  ++ D       E+ +    LT RETDV+ + A GL 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDV------ELIARTATLTHRETDVVLGAARGLD  173

Query  179  NAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESGLV  222
            N  IA +L +S +TVKTH+   ++KL  RDR Q V +A+ SGLV
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

435) Strvi_8953 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 138/218 (64%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQVLVRTGLVTIIDAQRDLEVVGECGDGQTAVELAGRLRPEVVVMDVRMPVLD  64
            I V++ DDQ ++R+GL  I++   ++ V+GE +DG++A  +    RP+VV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPSQLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRQLVGTYAARIRPAEGP---PRDIPLTPRELEVLRLIANGLSNSEIAAT  181
             G + L +  ++ +V+    R R+A +    +R   LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLVT  219
            L IS  TVKT ++R ++KL  RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

436) Bcav_0102 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 148/218 (68%), Gaps = 4/218 (1%)

Query  1    MIRVLIADDQALIRGGFRSlldaeddvevvaeaadgaeavrlaaeTRPDVVLMDIRMPKL  60
            MI V++ DDQA+IR+G+R++L+  +   +   A + +    + + +RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRG-SRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIVADPRASGAHIVVVTTFELDEYVAEAIRAGASGFLVKDTEPAELvravrva  120
            DG+ AT  + ADP  ++ +I+V+TTF+ DE V  A+RAGA GFL K +++  L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aaGDALLSPTVTRRLLAQVAESTRAVKAVPGLDH---LTDREREVLVTVAEGLSNDEIAA  177
            A GD+ LS+  ++ +++++    R+   V  + +   LT+RE +V++  A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGLV  215
             LF+SP+TVKTH++R+MTKL ARDR+QLV  A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

437) BN6_00630 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 145/220 (66%), Gaps = 9/220 (4%)

Query  1    MIRVVLADDQVLVRAGFRLLLDTedgfevvgeagdgaealllaREHRPDVVVMDIRMPGV  60
            MI VVL DDQ ++RAG+R +L+  +   +   A++ +   ++ R  RPDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPIL  59

Query  61   DGLTATRDICAE--LPDVKVLVLTTFDVDQYVFEALRGGASGFLLKDADPVELLRALTVV  118
            DG+ AT  + A+  L  V++LVLTTFD D+ V+ ALR+GA GFL K AD+  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGDALLAPSVTRRLIEEFAARPEHRRPDPKAL----RELTAREREILALVAGGLSNDEI  174
            A+GD+ L+++ ++ ++ ++  R   R +    L      LT RE +++   A GL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  175  AEHLVISPATSRTHVSRVMTKLAARDRAQLVVLAYESGLV  214
            A +L ISPAT +TH++R MTKL ARDR+QLV +A+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

438) Noca_4902 in NC_008697


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 147/222 (67%), Gaps = 7/222 (3%)

Query  1    MIRVLLADDQSLLRTGFRMILGAEPDVEVVGEARDGEEAVALVDELLPDVVLMDLRMPNM  60
            MI V+L DDQ+++R+G+R IL  ++++ V+GEA DG  A A++    PDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RITAAHEAVRVVVLTTFDLDEYVYSSLRAGASAFLLKDAKEDQLVAAIRVA  118
            DG+ AT   R  +  +AVR++VLTTFD DE V ++LRAGA +FL K A  + L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLFSPSVTKRLIG----RFaapasapvaadlpaLTNREREVWELVARGLSNAEITE  174
            A G++ +S++ +K +++    R  +++   + A  ++LT+RE +V    ARGL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGLVQPGN  216
             L IS  T KTH+   + KLH R+R Q V +A+ SGLV+ ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

439) SFUL_5249 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 144/220 (66%), Gaps = 15/220 (6%)

Query  13   ITLVLADDHPVVRDGLRGMFTAEPGFEVLGEAADGVDALAVVERLDPDVVLMDLRMPGGG  72
            I +VL DD++++R GLRG++  ++G+ V+GEAADG  A+AV+    PDVVLMDLRMP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  73   GVAAIAELTRRGARS----QVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFAAVRA  128
            GV+A A L  R+       ++LVLTT+D D + L+A+ AGA G+L K A  E L+AAV A
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  129  AADGRSVLSPAVASRLMTRVRTPASPA--------DAPLSAREREVLVLVARGTTNREIA  180
             A G + LS++ A  +++ +R  + +A         A L+ RE +V++  ARG  N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  181  AELFISEATVKTHLTHIFAKLGTKDRAAAVAVGYDRGILG  220
             +LFIS ATVKTHL +  +KL ++DR+  V++++  G++ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

440) AS9A_2056 in NC_015564


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 153/218 (71%), Gaps = 7/218 (3%)

Query  3    ITILLVDDQELMRMGLRMIIDAHPDLKVISEAGNGREAVDEVRRSCPDIVLMDVRMPVLD  62
            I ++LVDDQ ++R GLR I++ +++++VI+EA++GR A   +R S PD+VLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATKQIVKSHCD---TRVLVMTTFDLDEHVLGALQAGASGFLLKDTPPEDLVSAIRVV  119
            G++AT  + +++ D    R+LV+TTFD DE+VL+AL+AGA GFL K + +E L++A+  V
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AAGDAVVSPKITRRLLDRFLAGEQVPSEEP--QQLSlltererevlelvAAGLSNLEIGS  177
            A GD+ +S+  ++ ++  +    + +++     + + LT+RE +V+   A GL N+ I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  TLHLSEATVKTHVGRVLSKLGVRDRVQAVVFAYENGLV  215
             L +S ATVKTH+ R ++KL  RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

441) Svir_39200 in NC_013159


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 144/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRVLIADDQDMVRAGFRMILGAQEDIEVVADVSDGVEAVRRARELRPDVCLLDIRMPGL  60
            MI V++ DDQ M+RAG+R IL  + +I V+++ +DG  A    R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVTRQLAGPGVADPLKVVVVTTFDLDEYVHAALQGGASGFLLKDAGPTLLIEAVRAA  120
            DG+  T  L +    ++++++V+TTFD DE V AAL++GA GFL K A++  LI AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALVSPQVTVRLLRHFGRKQRPDRS----TRAKELTGRELDVVRAAARGLTNSEIGA  176
            A+GD+ +S+  +  ++ ++ R+ R+       +R+  LT RE DVV +AARGL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNGIMD  215
            +L++S +TVKTHL     KL  R+R ++ + A R+G+++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

442) Snas_1740 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (457),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 152/220 (70%), Gaps = 7/220 (3%)

Query  5    ISVLVVDDQSLLRGSFTLLIDTEDDLRvvgeagtgveavdaaRRLLPDVVLMDVRMPDMN  64
            I V++VDDQ+++R+++  +++ + ++RV+GEA+ G  A    R   PDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRICGDPALSGVRVLMLTTFDLDEYVYSSLRAGASGFLLKDVPPTQLLHAIRVVA  124
            G+ AT  + +DP L++VR+L+LTTFD DE V ++LRAGA GFL K   +  L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  NGESLLAPSVTRRLVAEFVARPHESTVASTDL----AAVTEREREVLTLVARGLSNTEIA  180
            +G++ L+++ ++ +V+++  R +  + +  +L    A++T+RE +V+   ARGL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  181  ERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLVT  220
              L +S ATVKTH+ + + KL ARDR+QLV  A+ SGLV 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

443) Tcur_2302 in NC_013510


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 93/223 (42%), Positives = 151/223 (68%), Gaps = 2/223 (0%)

Query  3    VRVLLVDDQPLLRTGFKLILEAESDLTVVGEAGDGATAVELTRTMLPDVVLMDIRMPGMD  62
            + V+LVDDQ+++R+G++ ILE ++++ V+GEA+DG +A  + R   PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRIVREGAAAHDPRVLILTTFDLDEYVIEAVRAGASGFLLKDAPPEDLVSAIRIV  122
            G+ AT   +R ++  +  R+L+LTTFD DE V+ A+RAGA GFL K A +E L++A+  V
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGDAIVAPSVTRRLLDKFASRLPSMRQTppppGletlterereVLKHVARGLSNAEIAR  182
            A GD+ ++++ ++ ++  +  R  S  +    +   TLT+RE +V+   ARGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  ELVVSETTVKTHVGNVLAKLGLRDRVQAVVYAYETGMSRPGQN  225
            +L +S +TVKTH+   ++KL  RDR Q V  A+ +G+   +++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

444) L083_4826 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 6/219 (2%)

Query  8    IRVLIVDDDPLVRSGLAMILDSPDDVEVVGEAGDGAEVPTAVAAHRPDIVLMDIRMPRVD  67
            I V++VDD++++R+GL  IL+ ++ + V+GEA+DG    + + + RPD+VLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GLAATEALRGSGD--APEIIVLTTFDADEFVLRALRAGASGFLLKDTPPVEILNAVRKVA  125
            G++AT ALR+  D  A  I+VLTTFD+DE VL ALRAGA GFL K + +  ++ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGEATLSPTVTRRLIEHVTRPGDqrgaasrrqargrLDDLSERERDVALAVAQGKSNAEI  185
             G+++LS+  ++ ++ ++ R G                 L++RE DV L+ A+G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART---ATLTHRETDVVLGAARGLDNVSI  177

Query  186  STELFMSVATVKAYVSRLLVKLELNNRVQVALLVHDAGL  224
            + +LF+S ATVK+ ++R + KL+  +R Q+  +   +GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

445) MLP_39710 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 90/222 (41%), Positives = 148/222 (67%), Gaps = 4/222 (1%)

Query  1    MITVFLVDDQALVRSGFALLINAEDDLEVVGEAADGQQAVDALARQQVDVVLMDIRMPRM  60
            MI V LVDDQA++R+G+  +++ + ++ V+GEAADG+ A   +   + DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRCILGRPQ--PPKILILTTFDLDEYVYAGLQAGASGFLLKDARPTELLSAIRNV  118
            DG+ AT  + + P+  + +IL+LTTFD DE V A+L+AGA GFL K A +  L++A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDAVVAPSATRRLLEHVLPTLPATSPPSGPDSRLSVLTEREIDVLVEIADGATNAEIC  178
            A GD+ ++++A++ ++ + L     ++      +R + LT+RE DV++  A G  N  I 
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  QRLYLAEGTMKTHIGRLLSKLGIRDRVGLVLFAYETGLAPRA  220
            + L+++ +T+KTH+ R ++KL  RDR  LV +A+ +GL  RA
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

446) STH921 in NC_006177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 91/227 (41%), Positives = 149/227 (66%), Gaps = 16/227 (7%)

Query  4    IRVLLVDDHAILREGIRYLLSASGEVEVIGEAQDGVEALEMVEKLRPDAVLMDIAMPRMN  63
            I V+LVDD+A++R G+R +L  +G + VIGEA DG  A+ ++   RPD VLMD+ MP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATKELKKRHPDLP---VLILSMYDSEEYVLPILRAGAAGYVLKRAAAQELVSALKAV  120
            G+ AT  L+  +PDL    +L+L+ +D++E VL+ LRAGA G++ K A ++ L++A+ AV
Sbjct  61   GVGATAALRA-DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  TSGQVILHPDVARTVMDNLQAQESPQGPPVAPRGASEAQ--AQLAQLTEREREVLTLIAH  178
            + G+  L ++ A+TV+ +L+ +          R+A++ +  A+ A LT+RE +V+   A+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRG---------RSATDVELIARTATLTHRETDVVLGAAR  170

Query  179  GLTNQQIAERLFISIKTVQAHRANLMEKLDLHDAVELTKFAIKSGLL  225
            GL N  IA  LFIS  TV++H    M KL+ +D  +L  +A++SGL+
Sbjct  171  GLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

447) Caci_0175 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 141/216 (66%), Gaps = 8/216 (3%)

Query  14   LLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMGGV  73
            +++VDD++++R GLRG+++ + G+ V+GEA+DG  A+     S PDVVLMDLRMP ++GV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  74   EAIRRLRVEQ--PAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAG  131
             A   LR +    AVR+LVLTT+D + +VL+A+ AGA G+L K A  E LI AV A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  132  QPVLAP----TVAQRLMTRVQTPLA-EPAPPGDALTerelevlrlvASGTTNRETARKLF  186
            +  L++    TV   L  R +++   E  +   +LT+RE +V+   A G  N   AR LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  187  ISEATVKTHLLHAYAKFGVRDRAAAVAEAYKRGLLK  222
            IS ATVKTHL +A +K+  RDR+  V+ A++ GL++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

448) liaR in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 149/220 (68%), Gaps = 6/220 (2%)

Query  3    IRVVLADDQELVRAGLSMVITGLPDLEIVGEAGTGAEAVRLADEVRPDVVVMDIRMPGTD  62
            I VVL DDQ ++RAGL  ++ + +++ ++GEA+ G  A  +    RPDVV+MD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAITADS--PTPRVLILTTFDDDENVYASLRAGASGFLVKDMalvdiiaairvva  120
            G+ AT A+ AD+   + R+L+LTTFD+DE+V A+LRAGA GFL K      +IAA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  agdalIAPSVTRRLIEDFA--GRPAPARQH-RRLDGITGREREVLTLIGRGLSNSEIAEE  177
             GD+ ++++ ++ ++ D+   GR+A   +   R   +T RE +V+   +RGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LFIGPATAKTHVARLLTKLDARDRVQLVIAAYDAGLVSPS  217
            LFI+PAT KTH+ R +TKL+ARDR QLV  A+ +GLV+ +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

449) BN159_4195 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 93/220 (43%), Positives = 143/220 (65%), Gaps = 10/220 (4%)

Query  8    VVIADDQALVRTGFSLILSADGIDVVAEAADGEQALEAVRRTRPDLVLMDVRMPGLDGLE  67
            VV+ DDQA++R+G+  IL   GI V++EAADG  A+  +R +RPD+VLMD+RMP LDG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  68   ATRRILSGGVVPDP---PPRVLILTTYDLDRYVYAALTAGASGFLLKDVTPEHLVAAVRL  124
            AT     +++ +DP   + R+L+LTT+D D  V AAL AGA GFL K   +E L+AAV  
Sbjct  64   AT-----AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  125  ARSGDALLAPAITRRLVE--RFVSQDTRTAALHRDLSVLTPREVEVLQAVGTGLSNAELA  182
               GD+ L+++ ++ +V   R  ++ +    L    + LT RE +V+ + + GL N  +A
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  ERFTLSEATVKTHVARILSKLRLRDRAQAVVVAYETGLIT  222
              + +S ATVKTH+ R ++KL+ RDR+Q V +A+ +GL+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

450) AORI_6959 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 150/222 (68%), Gaps = 15/222 (6%)

Query  1    MLLVDDDPLVRTGLSMILSSTGDIEVVAEAGDGDEAVPKVTMHAPDVVLMDIRMRRMNGL  60
            ++LVDD++++R+GL  IL  +G I V++EA+DG  A + +    PDVVLMD+RM  ++G+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   TATAAVTALP--NPPKVLVLTTYDLDEYVFDALGAGASGFLLKEGSPQEIIDAVRVVAAG  118
             ATAA+ A P  N+ ++LVLTT+D DE V+ AL AGA GFL K + ++ +I AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  EAMLSPRTTRKLIGHFVATRTSPRRHRARAGL------GTLTERERQIVTAVAQGWTNAE  172
            ++ LS+ +++ +++++       RR R+ +++      +TLT+RE ++V + A+G  N  
Sbjct  123  DTSLSAGAAKTVVSDL------RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  173  IGSELHLSEATVKTHITRIFAKLDATNRVQLTIFAYEAGLVA  214
            I+ +L +S ATVKTH+ R  +KL+A +R QL  +A+ +GLV 
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

451) B737_2742 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 149/219 (69%), Gaps = 9/219 (4%)

Query  5    VLLADDEPLVRTGLRALLEQQGVPVVGEAADGGEVLAAVRRTRPDVVLMDVRMPGVDGIE  64
            V+L DD++++R+GLR++LE+ G+ V+GEAADG   +A +R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  65   ATRQVLAALA-DPPKILVVTTFDNDDYVHEALLAGASGFLLKRARKEEIAHAVRTVAAGE  123
            AT  + A    ++ +ILV+TTFD D+ V  AL AGA GFL K A  E +  AV +VA G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  124  SLLFPEAIRRLVI-----GRAAGGKH--TRAAKTLTRREAEVLRLIATGLSNQDIAAALV  176
            + L + A + +V      GR+A + +  +R+A TLT+RE++V+   A GL N  IA  L 
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTA-TLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  VSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVVKPGH  215
            +S  TVKTH+ +  TKL A +R+Q V IA+ +G+V+ ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

452) AMES_2741 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 149/219 (69%), Gaps = 9/219 (4%)

Query  5    VLLADDEPLVRTGLRALLEQQGVPVVGEAADGGEVLAAVRRTRPDVVLMDVRMPGVDGIE  64
            V+L DD++++R+GLR++LE+ G+ V+GEAADG   +A +R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  65   ATRQVLAALA-DPPKILVVTTFDNDDYVHEALLAGASGFLLKRARKEEIAHAVRTVAAGE  123
            AT  + A    ++ +ILV+TTFD D+ V  AL AGA GFL K A  E +  AV +VA G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  124  SLLFPEAIRRLVI-----GRAAGGKH--TRAAKTLTRREAEVLRLIATGLSNQDIAAALV  176
            + L + A + +V      GR+A + +  +R+A TLT+RE++V+   A GL N  IA  L 
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTA-TLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  VSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVVKPGH  215
            +S  TVKTH+ +  TKL A +R+Q V IA+ +G+V+ ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

453) AMED_2769 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 149/219 (69%), Gaps = 9/219 (4%)

Query  5    VLLADDEPLVRTGLRALLEQQGVPVVGEAADGGEVLAAVRRTRPDVVLMDVRMPGVDGIE  64
            V+L DD++++R+GLR++LE+ G+ V+GEAADG   +A +R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  65   ATRQVLAALA-DPPKILVVTTFDNDDYVHEALLAGASGFLLKRARKEEIAHAVRTVAAGE  123
            AT  + A    ++ +ILV+TTFD D+ V  AL AGA GFL K A  E +  AV +VA G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  124  SLLFPEAIRRLVI-----GRAAGGKH--TRAAKTLTRREAEVLRLIATGLSNQDIAAALV  176
            + L + A + +V      GR+A + +  +R+A TLT+RE++V+   A GL N  IA  L 
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTA-TLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  VSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVVKPGH  215
            +S  TVKTH+ +  TKL A +R+Q V IA+ +G+V+ ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

454) Noca_4896 in NC_008697


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 94/215 (44%), Positives = 148/215 (69%), Gaps = 6/215 (2%)

Query  6    VVVVDDQPLVRAGLARIIEADPSIELVGEAGDGQTAMALVLRLEPEIVLMDVRMPLLDGI  65
            VV+VDDQ+++RAGL  I+E D++I ++GEA+DG++A A++    P++VLMD+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  66   AATRKLHEAQ--SSARIIVLTTFGLDDYVIGALRAGAHGFVLKDAPPERLLEAIHEVGAG  123
            +AT  L+     ++ RI+VLTTF+ D+ V++ALRAGA+GF+ K A +E L+ A++ V+ G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  RGVIDPAVTLPVIRALGTRELRP---EVAARLADLTSRERDVLVLLAQGHSNAEIAARLV  180
               + ++ +  V+  L  R   +   E+ AR A LT RE DV++  A+G  N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  181  VGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAGVV  215
            ++ +TVKTH+ + ++KL  RDR Q V  AF +G+V
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

455) BN159_4207 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 91/223 (41%), Positives = 144/223 (65%), Gaps = 8/223 (3%)

Query  3    IRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVTKVRELTPDVVLMDIRMPELN  62
            I V++ DDQ M+R G+  +L+  ++I V+GEA +GR A + +R   PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATREIVAAD--GTARVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  120
            G+ AT  + A     + R+LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGEALLAPSVTRRLITEFSKLSEAPRAFTGAH--AAYGDLTERETEVLVLIAQGLSNAEI  178
             G++ L+++ ++ +++++ +     R+ T+ +  A  + LT+RET+V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  179  AERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  221
            A  L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

456) XC_3117 in NC_007086


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 6/218 (2%)

Query  1    MIRVCLVDDQTLVRQGIRSLLALDAGIEVVAEAADGRQAVEQIPQIQPDVVLMDMRMPVM  60
            MI V LVDDQ+++R G+R++L  DAGI V++EAADGR A   I   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGLEALQMLSRNGTLPPT--IILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTV  118
             G+ A   L  +  L +   ++LTTFD+D+ VLA+L+AGA G+L K    E L++A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLVQPAVTQRLLSGLEHMRNEFVSLD---RPDPLTDRETEILRLMASGFSNKEIAN  175
            A G++ + ++ ++ ++S+L +       ++   R   LT+RET+++   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  SLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV  213
             L ++ +T+K H++  ++KL  RDR + V  AF   LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

457) XCC1128 in NC_003902


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 6/218 (2%)

Query  1    MIRVCLVDDQTLVRQGIRSLLALDAGIEVVAEAADGRQAVEQIPQIQPDVVLMDMRMPVM  60
            MI V LVDDQ+++R G+R++L  DAGI V++EAADGR A   I   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGLEALQMLSRNGTLPPT--IILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTV  118
             G+ A   L  +  L +   ++LTTFD+D+ VLA+L+AGA G+L K    E L++A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLVQPAVTQRLLSGLEHMRNEFVSLD---RPDPLTDRETEILRLMASGFSNKEIAN  175
            A G++ + ++ ++ ++S+L +       ++   R   LT+RET+++   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  SLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV  213
             L ++ +T+K H++  ++KL  RDR + V  AF   LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

458) XCR_1350 in NC_017271


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 6/218 (2%)

Query  1    MIRVCLVDDQTLVRQGIRSLLALDAGIEVVAEAADGRQAVEQIPQIQPDVVLMDMRMPVM  60
            MI V LVDDQ+++R G+R++L  DAGI V++EAADGR A   I   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGLEALQMLSRNGTLPPT--IILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTV  118
             G+ A   L  +  L +   ++LTTFD+D+ VLA+L+AGA G+L K    E L++A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLVQPAVTQRLLSGLEHMRNEFVSLD---RPDPLTDRETEILRLMASGFSNKEIAN  175
            A G++ + ++ ++ ++S+L +       ++   R   LT+RET+++   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  SLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV  213
             L ++ +T+K H++  ++KL  RDR + V  AF   LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

459) xccb100_3213 in NC_010688


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 6/218 (2%)

Query  1    MIRVCLVDDQTLVRQGIRSLLALDAGIEVVAEAADGRQAVEQIPQIQPDVVLMDMRMPVM  60
            MI V LVDDQ+++R G+R++L  DAGI V++EAADGR A   I   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGLEALQMLSRNGTLPPT--IILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTV  118
             G+ A   L  +  L +   ++LTTFD+D+ VLA+L+AGA G+L K    E L++A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLVQPAVTQRLLSGLEHMRNEFVSLD---RPDPLTDRETEILRLMASGFSNKEIAN  175
            A G++ + ++ ++ ++S+L +       ++   R   LT+RET+++   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  SLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV  213
             L ++ +T+K H++  ++KL  RDR + V  AF   LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

460) RAM_14075 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 149/219 (69%), Gaps = 9/219 (4%)

Query  18   VLLADDEPLVRTGLRALLEQQGVPVVGEAADGGEVLAAVRRTRPDVVLMDVRMPGVDGIE  77
            V+L DD++++R+GLR++LE+ G+ V+GEAADG   +A +R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  78   ATRQVLAALA-DPPKILVVTTFDNDDYVHEALLAGASGFLLKRARKEEIAHAVRTVAAGE  136
            AT  + A    ++ +ILV+TTFD D+ V  AL AGA GFL K A  E +  AV +VA G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  137  SLLFPEAIRRLVI-----GRAAGGKH--TRAAKTLTRREAEVLRLIATGLSNQDIAAALV  189
            + L + A + +V      GR+A + +  +R+A TLT+RE++V+   A GL N  IA  L 
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTA-TLTHRETDVVLGAARGLDNVSIARDLF  182

Query  190  VSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVVKPGH  228
            +S  TVKTH+ +  TKL A +R+Q V IA+ +G+V+ ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

461) Snas_4575 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 99/226 (44%), Positives = 156/226 (70%), Gaps = 10/226 (4%)

Query  1    MIKVLLADDQSLLRLGFRAVLDKQPDLEVVGEAADGERAVAMTRALRPDVVLMDVRMPVM  60
            MI V+L DDQ+++R G+R++L+ ++++ V+GEAADG  A A+ R+ RPDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRILASG--SAARVLVLTTFDLDEYVFAALRAGASGFLVKDATPAELTggirvv  118
            DG+ AT  + A    +A R+LVLTTFD DE V+AALRAGA GFL K A +  L +++  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aagdaavapgvTRRLIERFAEHLPATERVPPGDD---RLNSLTEREHDVLVQVARGRSNQ  175
            A GD+++++G ++ ++     +L    R + + +   R  +LT+RE DV++  ARG  N 
Sbjct  120  AKGDTSLSAGAAKTVVS----DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  176  EIAELIHVSQATVKVHVGRILAKLGLRDRAQVIVFAYENGVVRPGE  221
             IA  + +S ATVK H+ R ++KL  RDR+Q++ +A+ +G+V  +E
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

462) SACTE_4648 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 143/220 (65%), Gaps = 13/220 (5%)

Query  10   VITLALVDDHPVVRDGLRGMFSSAPGFEVLGEAADGVAAVELVRRVDPDVVLMDLRMPGG  69
            +I + LVDD++++R GLRG++  A G+ V+GEAADG +A  ++R   PDVVLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  70   GGVAAIAEL---TRLGARSRVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTAVRA  126
            +GV+A A L     L A  R+LVLTT+D D + L+A+ AGA G+L K A  E L++AV A
Sbjct  60   DGVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  127  AADGRTVLSPAVASRLITRVRTPAAPGGE--------ALSTREREVLALVAKGTSNREIA  178
             A G T LS++ A  +++ +R  + ++ +        +L+ RE +V+   A+G  N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGILG  218
              LFIS ATVKTHL +  +KL A+DR+  V++++  G++ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

463) B737_5425 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 153/225 (68%), Gaps = 9/225 (4%)

Query  3    VRVLLVDDQPLMLVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMD  62
            + V+LVDDQ+++  GL  ++ D++ + V GEA+DGR A+ ++R  RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATR--RATAEPHPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVA  120
            G+ AT   RA ++ ++ ++LVLTTFD+DE V +ALRAGA GFL KS   ++++ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIADFagtagpaapepdtepaadSGLLAEITDREREVLALVGQGLSN  180
             GD+ ++++ ++ +++D+   + +A+       +      A +T+RE +V+   ++GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------ATLTHRETDVVLGAARGLDN  174

Query  181  TEIAERLVISAATAKTHVARLFAKLEARDRVHLAIIAFEAGLVPR  225
              IA  L IS+AT KTH+ R  +KL+ARDR +L  IAF +GLV R
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

464) RAM_27995 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 153/225 (68%), Gaps = 9/225 (4%)

Query  3    VRVLLVDDQPLMLVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMD  62
            + V+LVDDQ+++  GL  ++ D++ + V GEA+DGR A+ ++R  RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATR--RATAEPHPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVA  120
            G+ AT   RA ++ ++ ++LVLTTFD+DE V +ALRAGA GFL KS   ++++ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIADFagtagpaapepdtepaadSGLLAEITDREREVLALVGQGLSN  180
             GD+ ++++ ++ +++D+   + +A+       +      A +T+RE +V+   ++GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------ATLTHRETDVVLGAARGLDN  174

Query  181  TEIAERLVISAATAKTHVARLFAKLEARDRVHLAIIAFEAGLVPR  225
              IA  L IS+AT KTH+ R  +KL+ARDR +L  IAF +GLV R
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

465) AMES_5425 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 153/225 (68%), Gaps = 9/225 (4%)

Query  3    VRVLLVDDQPLMLVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMD  62
            + V+LVDDQ+++  GL  ++ D++ + V GEA+DGR A+ ++R  RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATR--RATAEPHPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVA  120
            G+ AT   RA ++ ++ ++LVLTTFD+DE V +ALRAGA GFL KS   ++++ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIADFagtagpaapepdtepaadSGLLAEITDREREVLALVGQGLSN  180
             GD+ ++++ ++ +++D+   + +A+       +      A +T+RE +V+   ++GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------ATLTHRETDVVLGAARGLDN  174

Query  181  TEIAERLVISAATAKTHVARLFAKLEARDRVHLAIIAFEAGLVPR  225
              IA  L IS+AT KTH+ R  +KL+ARDR +L  IAF +GLV R
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

466) AMED_5492 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 153/225 (68%), Gaps = 9/225 (4%)

Query  3    VRVLLVDDQPLMLVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMD  62
            + V+LVDDQ+++  GL  ++ D++ + V GEA+DGR A+ ++R  RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATR--RATAEPHPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVA  120
            G+ AT   RA ++ ++ ++LVLTTFD+DE V +ALRAGA GFL KS   ++++ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALIAPSVTRRLIADFagtagpaapepdtepaadSGLLAEITDREREVLALVGQGLSN  180
             GD+ ++++ ++ +++D+   + +A+       +      A +T+RE +V+   ++GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------ATLTHRETDVVLGAARGLDN  174

Query  181  TEIAERLVISAATAKTHVARLFAKLEARDRVHLAIIAFEAGLVPR  225
              IA  L IS+AT KTH+ R  +KL+ARDR +L  IAF +GLV R
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

467) Cwoe_4937 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (455),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 96/227 (43%), Positives = 144/227 (64%), Gaps = 9/227 (3%)

Query  1    MIRVVVADDMALVRGGMKMILEADPgvrvvgeaadgadaveQAIRTG-PDVAVMDIRMPH  59
            MI VV+ DD A++R+G++ ILE      +   A + +      IR + PDV +MD+RMP 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAF--AVIRGSRPDVVLMDLRMPI  58

Query  60   VDGIEATR--RLQQRMPDVRVLVVTTFHLDEYVHEALRAGASGFLLKDTAPDSLVDAVRT  117
            +DG+ AT   R +  +  VR+LV+TTF+ DE V  ALRAGA GFL K + ++SL+ AV +
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAAGDALLSPAVTRQLIEHYVQ--RPTPDAGLTGRLAELTPRELDVARLVARGMTNAEIA  175
            VA GD+ LS++ ++ ++ +  +  R++ D  L +R A LT RE DV    ARG+ N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  176  AELFLGEGTVKTHVTSILSKLALRNRTQIVVAAYESGLVELGRNELP  222
             +LF++ +TVKTH+   ++KL  R+R Q+V  A+ SGLV+  R E P
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN--RAEHP  223

468) XNR_3470 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 93/220 (43%), Positives = 149/220 (68%), Gaps = 9/220 (4%)

Query  4    IRVMLVDDQALLRTGFRMVLSAQPDMEVVAEASDGVEAIEALRSTATDVVLMDVRMPRLD  63
            I V+LVDDQA++R+G+R +L  ++++ V++EA+DG  A+  +R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVEATRRICAAE--NPPKVLILTTFDLDEYAFTGLRAGASGFMLKDVPPSELLTAIRSVH  121
            GV AT  + A    N+ ++L+LTTFD DE  +++LRAGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  SGDAVVAPSTTRRL---LDRFAPMLPDASAAPRHAGLDRLTGREREVMVLVAQGLSNGEI  178
             GD+ +++++++ +   L R +    D    +R A L +   RE +V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTH---RETDVVLGAARGLDNVSI  177

Query  179  AAHLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV  218
            A +L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

469) HMPREF9154_2484 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 91/223 (41%), Positives = 152/223 (69%), Gaps = 12/223 (5%)

Query  1    MIRVLLADDQSLVRSGFRMLIDSADDMETVGEVSNGADAVMVVKSQPVDVVLMDIRMPIM  60
            MI V+L DDQ+++R+G+R +++ A+ +  +GE ++G  A  V+++   DVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGTEAT---RQITELGGETKVLVLTTFDLDEYVFAALRNGASGFLLKDALPDDLLGAIRt  117
            DG  AT   R   +L +  ++LVLTTFD DE V+AALR GA GFL K A ++ L++A+ +
Sbjct  60   DGVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  vagggavvaptatRRLLDHVAPKLPAGKPRDD----SRLDGLTEREREVLMEVARGANNT  173
            VA G++ +++ A++ ++ ++  +   G++  D    +R   LT+RE +V++  ARG +N 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRR---GRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  174  EIGSRLYMAEGTVKTHIGRLLAKLQARDRVGLVLIAHECGLLD  216
             I+  L+++ +TVKTH+ R ++KL+ARDR  LV IA   GL++
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

470) SACTE_1590 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 107/225 (48%), Positives = 163/225 (73%), Gaps = 12/225 (5%)

Query  4    IKVLLADDQALLRSAFRVLVDSEPDMRvvgeaadgaeavelaRSTGVDVVLMDIRMPGTD  63
            I V+L DDQA++R+++R +++ ++++RV+GEAADG  A  + R++  DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLTATRTISADPELAGVRIVMLTTFEVDEYVVQALRAGAAGFLGKGAEPDELLNAIRIaa  123
            G+ AT ++ ADP+L +VRI++LTTF+ DE V+ ALRAGA GFL+K+A+++ L+ A+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  ageallspaaTKGLIATFLAQAPDADGDLGRSTAYSELL---DALTGREREVLVLVAGGH  180
             G++ LS++A+K +++ +  +        GRS++  EL+    +LT RE +V++  A G 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR--------GRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  181  SNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV  225
             N  IA  L +SP TVKTH+NRAM+KL ARDR+QLV IA+ SGLV
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

471) Snas_1903 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 146/225 (65%), Gaps = 8/225 (3%)

Query  5    IRVLVADDHLVVRTGFAELLGTQPDFSVVGIASDGAEAVMACRTATPDVVLMDVRMPNMD  64
            I V++ DD+ ++R+G+  +L  ++++ V+G A+DG  A    R + PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRIAATSE-ATPRVIILTTFDLDEYVYDALRAGASGFLLKDVTAERLFDAVRVVA  123
            G+ AT  + A ++  + R+++LTTFD DE V  ALRAGA GFL K   +E L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGEALLAPTVTRRLIGEFVQSKQPRPVAD----ARLASLTPRETEVLRLVAEGLSNPELA  179
             G++ L++  ++ +++++   ++ R+ +D    AR A+LT RET+V+   A GL N  +A
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  180  ARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGLVVPGGRP  224
              L +S  TVKTH++R + KL  RDR Q V  A+ SGLV  + +P
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

472) Caci_6980 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 141/221 (64%), Gaps = 14/221 (6%)

Query  6    IRVVLADDHTVMRAGVVALLASEPTITIVGEAGDGREAVELVERLGADVALLDLRMPVLD  65
            I VVL DD++++RAG+ ++L  ++ I ++GEA+DGR A  ++    +DV L+DLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVAATTEIVAGK--TGTRVLILTTYDTDAEIERAVEAGAIGYLLKDTTREQLVEAIRGAA  123
            GV+AT+ + A+    + R+L+LTT+D D E+  A+ AGA G+L K +  E L+ A+ + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  RGETVLAPRIAAKLVARMRQPA-----------PVVLTTREVDVLNGVADGLSNADIGKR  172
            +G+T L++  A  +V+ +R+ +              LT RE DV+ G A GL N  I++ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLLPRSE  213
            L I+ ATVKTHL R  +KL+  DR + V  A+  GL+ R+E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

473) ROP_02670 in NC_012522


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 156/218 (72%), Gaps = 7/218 (3%)

Query  3    ITVLLVDDQELMRMGLNMVLDAQDDITvvgeasdgaaavaavRKLEPDVVLMDVRMPVVD  62
            I V+LVDDQ ++R GL  +L+ + +I V+GEA+DG +A A +R   PDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVSATAQI-LESGVAS-RVLVMTTFDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVA  120
            GV+ATA +  ++++ + R+LV+TTFD DE+ ++ALRAGA GFL K + SE L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTRRLLSRFLDDGPAPLRDPEVLD---VLTEREREVLQLVATGLSNTEIAA  177
             GD+ +S+  ++ ++S +   G ++  D E++     LT+RE +V+   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSA-TDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGLV  215
            +LF+S +T+K+H+ R +TKL+ RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

474) Sros_8243 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 144/218 (67%), Gaps = 7/218 (3%)

Query  3    IKVLLADDQALVRAGFRSLLSRSKELTVVGEAATGDEAVRQARSTEPDVILMDIRMPGMD  62
            I V+L DDQA++RAG+R++L     + V+GEAA G  A    R++ PDV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATR--RILAERPATKVVILTTFDTDEHVFAALRAGASGFLTKEVAPAELRHavavva  120
            G+ AT   R  ++  A ++++LTTFD DE+V+AALRAGA GFL+K   +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  aGEALLSPSVTRRVVQQFAHRPAPVSGDGlavltvr----erevvrlvaeGLSNDQIAAK  176
             G++ LS++ ++ VV ++ +R  + ++  L   T      E +VV   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LVISPLTAKTHVTRALMKLNARDRAQLVILAYETGLVQ  214
            L ISP T KTH+ RA+ KL+ARDR+QLV +A+ +GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

475) CMS_2283 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (449),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 105/236 (45%), Positives = 149/236 (64%), Gaps = 24/236 (10%)

Query  1    MIRVVLVDDQSIVRAGFRVVLETAGGIEVVGEASGGREAVELVRRLAPDVVVMDVRMPGG  60
            MI VVLVDDQ+++RAG+R +LE AG I V+GEA++GR A  ++R   PDVV+MD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRAITGADAHADAKADTPARAPGDDPQGPAVLVATTFDLDEYVFGALEAGARGFV  120
            DG+ AT A+ +       +                +LV TTFD DE V++AL AGA GF+
Sbjct  60   DGVGATAALRADPDLNAVR----------------ILVLTTFDGDEEVLAALRAGADGFL  103

Query  121  LKDAEPEEFIQAVRALAEGRAALDGVTTRRVMDEFTRR-RVASAVH--PGVEVLTPREQD  177
             K A++E +I AV A+A G ++L + +++ V+ ++ RR R A+ V+  +    LT RE D
Sbjct  104  AKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETD  163

Query  178  IVRLLGD--GLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL  231
            +V  LG   GL N  I+  L I  +TVK+HL R MTKL +RDR Q V  ++RSGL+
Sbjct  164  VV--LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

476) Celgi_0782 in NC_015671


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (449),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 149/217 (69%), Gaps = 14/217 (6%)

Query  3    IRVLLADDHPVVRSGLAGLLAVETDVEVVGEAADGEHAVTLARALRPDLVLMDLRMPRLD  62
            I V+L DD++++R+GL G+L  ++++ V+GEAADG  A ++ R+ RPD+VLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GAAATA--RIVAEVPGTRVLVLTTYETDADILRAVEAGATGYLLKDTPRaelvagvraaa  120
            G +ATA  R  +++ + R+LVLTT++ D ++L A+ AGA G+L K +    L+A+V A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  rgeaalSPSVARRLVQQVR-----------GGHDERLTARETQVLAGVARGLSNAAIGQE  169
            +G+++LS++ A+ +V ++R            ++   LT RET+V+ G ARGL N +I+++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  170  LFIAEATVKTHLLRVFAKLGVDDRTRAVTAAMERGIL  206
            LFI+ ATVKTHL R  +KL   DR + V+ A   G++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

477) Strvi_8885 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 149/219 (69%), Gaps = 5/219 (2%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEIVAEAGDGVEALQAVRSTEVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ +++EA+DG  A+  +R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATR-LICERE-GAPKVIILTTFDLDEYAFSALKAGAGGFMLKDVPPAELLAAIRAVH  120
            GV AT  L  + +  A ++++LTTFD DE  ++AL+AGA+GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPggggsggRVRPELERLTDREREVVLLVAQGLSNGEIA  180
             GD+ +++++++ ++  +     ++ +     R     LT+RE +VVL  A+GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSIA  178

Query  181  ARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV  219
              L +S ATVKTH+ R +TKL+ RDR Q+V +A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

478) AS9A_3822 in NC_015564


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 90/224 (41%), Positives = 147/224 (66%), Gaps = 7/224 (3%)

Query  8    IRVALIDDQQLVRAGFRMVIDSQPDMSVVIEASDGDQGVREIARVGCDIVLMDVQMPRLN  67
            I V L+DDQ ++RAG+R +++ ++++ V+ EA+DG  +   I     D+VLMD++MP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIDATRRLTDMGD--TPKVVVLTTFDNDDYVMNAISAGASGFLLKDADPEQLLAAIRTVH  125
            G++AT  L    D  + +++VLTTFD D+ V+ A+ AGA GFL K AD+E L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  RGDAVMAPKATQKLLRHVGPLLRDGSDPGK-KRPSLPAELTPREVEILTAMGRGLSNSEI  184
            +GD+ +++ A++ +   V+ L R G  +      +  A LT RE +++ + +RGL N  I
Sbjct  121  KGDTSLSAGAAKTV---VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  185  AETFFVSEATVKTHVGRVLAKTQSRDRVQAVILAFQIGLVRPED  228
            A  +F+S ATVKTH+ R ++K ++RDR Q V +AF+ GLV   +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

479) O5Y_04650 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 141/219 (65%), Gaps = 3/219 (1%)

Query  1    MIDVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHG  60
            MIDV++ DDQ ++R G+  +L  ++ IRV+G+A  G  A+  +R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATREVLAE--FPATRVVVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSAVLTV  118
            DG+ AT  + A+  + A R++V+TTFD DE V+ AL +GA GFL K AD+E L +AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AEGGSVLSPRLTSRLIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIAD  178
            A G++ LS+  +  ++ ++ RR  ++      +    L+ RE DVV   ++GL+N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  SLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNVIA  217
             L +  +TVK+H++    KL+ R R Q+V  A+R+ ++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

480) RER_10300 in NC_012490


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 141/219 (65%), Gaps = 3/219 (1%)

Query  1    MIDVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHG  60
            MIDV++ DDQ ++R G+  +L  ++ IRV+G+A  G  A+  +R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATREVLAE--FPATRVVVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSAVLTV  118
            DG+ AT  + A+  + A R++V+TTFD DE V+ AL +GA GFL K AD+E L +AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AEGGSVLSPRLTSRLIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIAD  178
            A G++ LS+  +  ++ ++ RR  ++      +    L+ RE DVV   ++GL+N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  SLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNVIA  217
             L +  +TVK+H++    KL+ R R Q+V  A+R+ ++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

481) SCATT_p05290 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (451),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 148/218 (68%), Gaps = 6/218 (2%)

Query  1    MVLADDQELVRAGLSMVITGLPDLEIVGEAGTGAEAVRLADEVRPDVVVMDIRMPGTDGI  60
            +VL DDQ ++RAGL  ++ + +++ ++GEA+ G  A  +    RPDVV+MD+RMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATRAITADS--PTPRVLILTTFDDDENVYASLRAGASGFLVKDMalvdiiaairvvaag  118
             AT A+ AD+   + R+L+LTTFD+DE+V A+LRAGA GFL K      +IAA+  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  dalIAPSVTRRLIEDFA--GRPAPARQH-RRLDGITGREREVLTLIGRGLSNSEIAEELF  175
            D+ ++++ ++ ++ D+   GR+A   +   R   +T RE +V+   +RGL N  IA +LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  IGPATAKTHVARLLTKLDARDRVQLVIAAYDAGLVSPS  213
            I+PAT KTH+ R +TKL+ARDR QLV  A+ +GLV+ +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

482) nfa42530 in NC_006361


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (451),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 148/220 (68%), Gaps = 7/220 (3%)

Query  5    VLIADDQAMVRQGFGALLAAQPDISVVGDAPDGKVAVAEAKRLRPDVVLMDVRMPEMNGL  64
            V++ DDQAM+R G+ ++L  +++I V+G+A+DG+ A A  +  RPDVVLMD+RMP ++G+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   DAARAILAAGFDPPVRVLMLTTFDIDDYVYEALSIGASGFLLKDapaeelvravrvvaeG  124
            +A+ A+ A     +VR+L+LTTFD D+ V  AL  GA GFL K A +E L+ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  QALLAPTVTRRLIAEVTSRRAASRKPAPEL----AALTPREREVLELVARGMSNTEIAEA  180
            ++ L++  ++ +++++  RR +      EL    A+LT RE +V+   ARG+ N  IA  
Sbjct  123  DTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLVTPG  220
            LF++  TVKTH+++  +KL+ RDR+Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

483) Caci_7843 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (451),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 93/230 (41%), Positives = 151/230 (66%), Gaps = 15/230 (6%)

Query  1    MSRILIADDQALLRASLRSLVNGYDDCQVVGEAANGAQAVHMAAGLRPDLVLMDVRMPVL  60
            M  +++ DDQA++RA+LR+++++  + +V+GEAA+G  A  +  G RPD+VLMD+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RITAADPGVRVLILTTFDLDEYVYEGLLAGASGFLLKDSPPADLVTAIEVI  118
            DG+ AT   R  +   +VR+L+LTTFD DE V  +L AGA GFL K + +  L++A+E +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  RSGEALLTPAATRRLITEFVrsrrtpnratataattanaiappdpaLDGLTAREREVLTL  178
              G++ L+++A++ +++++ R  R++      A T              LT RE +V+  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART------------ATLTHRETDVVLG  167

Query  179  VARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRAYEGGLV  228
             ARG  N  I+ +LF+S +TVKTH++  ++KL ARDR+QLV  A+ +GLV
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

484) Kfla_4480 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (451),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 148/215 (69%), Gaps = 6/215 (2%)

Query  5    ILLADDQAMVRAGFRLILEREPDFEIVGEAEDGKRAVELAQQLRPDVTLMDIRMPLMDGL  64
            ++L DDQAM+RAG+R ILE ++++ ++GEA DG+ A  + +  RPDV LMD+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATRVLAGQGVAHPLRVLIVTTFDLDELVHEALRSGARGFLLKDAGPRLLVEAVHAAANG  124
            +AT  L ++   +++R+L++TTFD DE V  ALR+GA GFL K A++  L+ AV+A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ESLVSPSITTRLLAHF-----STTSGHVRSPRPALTDRELDAVKAVARGRTNAEISAELM  179
            ++ +S++ +  +++++     S+T  ++ +  ++LT+RE D V + ARG  N  I+ +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  ISLSTVKSHLASVQRKIAARNRTEIAVWAWEYGLM  214
            IS +TVK+HL     K+ AR+R ++   A   GL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

485) Micau_2264 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 146/217 (68%), Gaps = 1/217 (0%)

Query  5    VRVLLVDDQHLVRTGFRvileveddievvgeAADGQRAVSMATALRPDVVLMDVEMPVLD  64
            + V+LVDDQ ++R+G+R ILE  +   +   AADG+ A ++  + RPDVVLMD+ MP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGE-AADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEDLIDAVRVVA  124
            G+ AT  + AD+   +  +L+LTTFD D+ ++AALRAGA GFL K++ +E LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  RGEGLIAPALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADV  184
            +G+  ++++ ++ V+S + R G ++ D    A TA LT RE +V+   ARG  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  LHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV  221
            L ++ ATVKTH++R ++KL  RDR Q V +A+  G+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

486) ML5_2376 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 146/217 (68%), Gaps = 1/217 (0%)

Query  5    VRVLLVDDQHLVRTGFRvileveddievvgeAADGQRAVSMATALRPDVVLMDVEMPVLD  64
            + V+LVDDQ ++R+G+R ILE  +   +   AADG+ A ++  + RPDVVLMD+ MP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGE-AADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEDLIDAVRVVA  124
            G+ AT  + AD+   +  +L+LTTFD D+ ++AALRAGA GFL K++ +E LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  RGEGLIASALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLELVARGASNAEIADV  184
            +G+  ++++ ++ V+S + R G ++ D    A TA LT RE +V+   ARG  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  LHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV  221
            L ++ ATVKTH++R ++KL  RDR Q V +A+  G+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

487) RHA1_ro00150 in NC_008268


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 98/218 (45%), Positives = 156/218 (72%), Gaps = 7/218 (3%)

Query  3    ITVLLVDDQELMRMGLNMVLDAQDDITvvgeasdgaaavaavRTLEPDVVLMDVRMPVVD  62
            I V+LVDDQ ++R GL  +L+ + +I V+GEA+DG +A A +R   PDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVSATAQI-LESGVAS-RVLVMTTFDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVA  120
            GV+ATA +  ++++ + R+LV+TTFD DE+ ++ALRAGA GFL K + SE L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTRRLLAKFLDDGPGPLRDPEVL---DVLTEREREVLQLVATGLSNTEIAG  177
             GD+ +S+  ++ +++ +   G ++  D E++     LT+RE +V+   A GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSA-TDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGLV  215
            +LF+S +T+K+H+ R +TKL+ RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

488) Sros_6211 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 142/220 (65%), Gaps = 9/220 (4%)

Query  11   IRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLD  70
            I V++VDDQ+++R GL  IL  D+++ V+GEA +G  A ++ R  RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  71   GVGATREL--AATVPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVH  128
            GVGAT  L   + +   R+L L+TFD DE V++ALRAGA GFL+K + +E L AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  129  AGEAAVAPRLLTRLISTYVRAPHGTRPTPTGL----GELTPREVEVWRLMATGLDNTGIS  184
             G++++++     ++S   R  +G  +T   L    + LT RE +V    A GLDN +I+
Sbjct  121  KGDTSLSAGAAKTVVSDLRR--RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  185  RTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESGLVT  224
            R L IS +TVK  +     KL  RDR+Q V +A+ SGLV 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

489) Kfla_4492 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 97/225 (44%), Positives = 146/225 (65%), Gaps = 11/225 (4%)

Query  3    LKVLLADDQAMIRRGLRLILEDQPDITVVGEAADGAEAIELARRLRPDVCLVDIRMPKLD  62
            + V+L DDQAMIR GLR ILED ++I V+GEAADG  A+ + R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEVTRALAGPQVKDPIRVVVVTTFDLDEYVYGALRGGAAGFVVKDAGPALLVEAVRAAC  122
            G+  T AL +    +++R++V+TTFD DE V +ALR+GA GF+ K A++  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEALVSPSITLRLLSHLNATAPRGRGMPSPELSGRA-------LEVVRAIARGRTNQEI  175
            +G++ +S++ +  ++S+L     RGR+    EL +R+        +VV + ARG  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLR---RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  176  AAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENHLVSSPGD  220
            A +LFIS +TVK+HL    +KL  R+R ++   A  + LV+ + +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

490) Namu_0651 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 102/233 (44%), Positives = 149/233 (64%), Gaps = 14/233 (6%)

Query  3    ITVLLADDQPLIRLGFRMILEDTGDIEVIGEAADGRSATEQALTLRPDVVLLDIRMPGMD  62
            I V+L DDQ++IR G+R ILED+G I VIGEAADGRSA       RPDVVL+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRIMAADPQ---ARILVLTTFDLDEYAFAALRGGASGFLLKDAPVAELVHAIRVI  119
            G+ AT   + ADP+    RILVLTTFD DE  +AALR+GA GFL K A    L+ A+  +
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AQGHALVAPRITRLLLDAYAPQLPDPLAGDRPGPDRAVVGPGGSLTGREHEVLLLLARGR  179
            A+G++ +++  ++ ++     +       +R++ D  +++  ++LT RE +V+L  ARG 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR-------GRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  180  SNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYAYEHGLIGGNRPARP  232
             N  IA DL +S  TVK+H+   + KL+ R+R   V  A+  GL+  NR+ +P
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV--NRAEHP  223

491) Cwoe_3988 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 96/225 (43%), Positives = 149/225 (67%), Gaps = 9/225 (4%)

Query  9    VRVMLVDDDELVRRGLGLILSSDPTLELAGEaadgdvavrravHQRPDVVLMDVRMPVLD  68
            + V+LVDD+ ++R GL  IL  D+ + + GEAADG  A       RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GIAATRELIAR--VPAAKVVILTTFEEDDYVIGALRAGASGFLLKRSSPEDLRRAIHTVA  126
            G++AT  L A   + A ++++LTTF+ D+ V++ALRAGA GFL K + +E L  A+++VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  AGDALLSPSVTRRVIDRLVEQPVLRPSSD----ARLSELTPREQEVLLLMAQGLSNREIV  182
             GD+ LS++ ++ V+  L  +   R+++D    AR + LT RE +V+L  A+GL N  I 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  183  DALAVEETTVKSHVRRVLSKLGVRDRVHAVILAYESGLVSPGGRA  227
              L +  +TVK+H+ R ++KL  RDR + V +A+ SGLV+ + ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

492) AM1_0515 in NC_009925


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (450),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 134/207 (65%), Gaps = 10/207 (4%)

Query  1    MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVM  60
            MI V+LVDDQ+++R GL ++L+  +++ V+GEA +G+ A+      +PD++LMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATQAIRQQA--PQINILVLTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAV  118
            DGV+AT A+R ++    + ILVLTTFD+++ V  A+R GA G+L K + S+ L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HKGYTHFGPGLFEKMIT-------ATPTVEEPPELAELTPRETEVLALIAEGQSNREIAE  171
             KG T +++G    +++       ++  VE  +  A LT RET+V+   A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  ALYISERTVKNHVNSILKRLNVRDRTQ  198
             L+IS  TVK H+N  + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

493) BLASA_0884 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (449),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 94/215 (44%), Positives = 140/215 (66%), Gaps = 14/215 (6%)

Query  1    MLVVDDHPVVRGGLVGWLAAQPDLEVVGEAGDGLEALALVAEHAPDVVLMDLRMPRMDGV  60
            +++VDD++++R+GL G L  ++++ V+GEA+DG  A+A++    PDVVLMDLRMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   AATE--RIGVAHPSVRVLVLTTYDTDADIVRAVEAGATGYLLKDTPLPQLADAVRAAARG  118
            +AT   R +    +VR+LVLTT+D D +++ A+ AGA G+L K +    L  AV A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  ETVLAPPVAARLVSRMR-----APAVD------APTARELQVLSGVARGLTNAEIGRELF  167
            +T L++  A  +VS +R     A  V+      + T RE +V+ G ARGL N  I+R+LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  168  IGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL  202
            I+ ATVKTHL R  +KL   DR + V +A   GL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

494) Sros_7301 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  123 bits (449),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 144/217 (67%), Gaps = 3/217 (1%)

Query  3    IRILLADDEPLLRMAFTMVLEAQPDMEVVGEAGDGMEAVRLARRFRPDVVLMDVRMPGTD  62
            I ++L DD++++R ++  +LE ++++ V+GEA+DG  A  + R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATG--RIVRTCRQTRVLILTTFDLDEYAFAGLKAGASGFLLKNALPEELLAAIRNVA  120
            G+ AT+  R        R+L+LTTFD DE  +A+L+AGA GFL K+A +E L+AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAAVSPRITRRLLENFAHQLPTGGAPASAERLQRLTPREREVLIEVARGLSNTEIAAG  180
             GD+++S+  ++ ++ ++ ++  ++       R   LT RE +V++  ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LHLAEATVKTHLGRILLKLELRDRVQAVVFAYEARLI  217
            L ++ ATVKTHL R + KL+ RDR Q V +A+ + L+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

495) XNR_0561 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 94/207 (46%), Positives = 145/207 (71%), Gaps = 3/207 (1%)

Query  7    ITVLLVDDDPLLRAGLSFMLGGAGDLRVVGEAGDGREVPALVERLRPDVVLMDIRMPHVD  66
            I V+LVDD++++RAGL  +L +AG +RV+GEA+DGR   A++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GLTATERLRALPD--APEVVLLTTFHADEQVLRALRAGAAGFVLKDTPPGEIVAAVRRVA  124
            G+ AT  LRA PD  A  +++LTTF++DE+VL ALRAGA GF+ K + +  ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGDPVLSPAVTRQLIGQVAEDGAHtrrararerlatlaprereVALAVGRGASNAEIAAE  184
             GD  LS++ ++ +++++   G  +       R ATL+ RE +V L+ +RG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  185  LYLSVATVKAHVSRVLARLGLNNRVQI  211
            L++S ATVK+H++R +++L   +R Q+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

496) Isova_0632 in NC_015588


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 149/218 (69%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDQALVRGGFRALVDSEPDMTVVAEAATGDEAVARTLETLPDVVLMDVRMPGL  60
            MI V+L DDQA++R+G+R++++ ++++ V++EAA G  A A    + PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIVADPRAGGVHVVVVTTFELDEYVAEAIRGGASGFLVKDTEPadlvravrva  120
            DG+ AT  + ADP   +V+++V+TTF+ DE V  A+R+GA GFL K +++  L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  aagdallSPGVTRRLLARVADATRDVASPPGLDR---LTAREHEVLVEVAGGWSNEEIAR  177
            A GD+ LS+G ++ +++ +    R  +    + R   LT RE +V++  A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLYLSESTVKTHVSRVMTKLGARDRAQLVVAAYEGGVV  215
             L++S +TVKTH++R MTKL ARDR+QLV  A+ +G+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

497) Krad_2537 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 87/180 (49%), Positives = 125/180 (70%), Gaps = 14/180 (7%)

Query  62   RMPVLGGVEVLRRLRAQERFAAVRVVVLTTFDGDDEVVQAMAAGADGFLSKASDPDDILQ  121
            RMP+L+GV     LRA+  + AVR++VLTTFDGD+EV+ A+ AGADGFL+K++D++ ++ 
Sbjct  55   RMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIA  114

Query  122  AITSVASGDIALSQRALRAVVAGLPTPTPADDRAQRTgaggegavevaRLRARVELLTar  181
            A+ +VA GD +LS  A ++VV++L     +    +              L AR   LT R
Sbjct  115  AVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVE--------------LIARTATLTHR  160

Query  182  erdvvvavarGLDNTQIGEELFISPLTVKTHVSRAMTKLRVRDRAQLVAIAYRAGIANPP  241
            E DVV++ ARGLDN  I+ +LFISP TVKTH++RAMTKL+ RDR+QLV+IA+R+G+ N +
Sbjct  161  ETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

498) O3I_026495 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 146/223 (66%), Gaps = 17/223 (7%)

Query  3    ITVLVVDDQELMRMGLKMVLGAHPDIEVIGEaangaaavsraaELVPDVVLMDVRMPVVD  62
            I V++VDDQ ++R GL+ +L  +++I VIGEAA+G +A +      PDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVTATA--RIVEAGHGCRVLVMTTFDLDEHALGALRAGASGFLLKDTPPEDLISAIRSVA  120
            GV ATA  R     ++ R+LV+TTFD DE+ L+ALRAGA GFL K + +E LI+A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDAVVSPKVTKRLLDRLIAEDPARMRDPGVLEV--------LTAREREVLEQIAAGRSN  172
             GD+ +S+  +K ++  L      R R+ +  +V        LT RE +V+   A G  N
Sbjct  121  KGDTSLSAGAAKTVVSDL------RRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  173  AEIAEQLYLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGLV  215
              IA +L++S ATVKTH+ R +TKL  RDR Q V +A+ +GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

499) Bcav_1049 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 157/223 (71%), Gaps = 10/223 (4%)

Query  1    MIRVLLVDDQALLRTGFRLVLEAETDIevvgeaadgvvaeQMARSLHPDVVLMDVRMPVR  60
            MI V+LVDDQA++R+G+R +LE +++I V+GEAADG  A  + R+ +PDVVLMD+RMP+ 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIEATASIVAA--MPAVRVLILTTFDLDEYAFSGLRAGASGFLLKDTRPADLVDAIRTV  118
            +G+ ATA++ A   + AVR+L+LTTFD DE  +++LRAGA GFL K + +  L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ASGDAVVSPRITRRMLELFGEYLPQGGDRDTSASD--PRLAELTPRELEVLVAVAEGLSN  176
            A GD+ +S+  ++ ++   ++   +G  R ++  +  +R A LT RE +V+++ A GL N
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  177  LEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLAYETGLV  219
            + IA  + +S ATVKTH+ R ++KL  RDR Q V +A+ +GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

500) Kfla_4830 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 148/219 (68%), Gaps = 10/219 (4%)

Query  3    IRVALVDDQELVRVGLAMVVDATDDIQIVLQAADGAEAVARLAETTVDVVLMDVQMPRLD  62
            I V LVDDQ ++R GL  +++ ++ I+++ +AADG  A A +  +  DVVLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATR-LVTARE-NAPKVIVLTTFDLDEYAFAGLRAGASGFLLKDASADEVLHAIRAVH  120
            GV AT  L +  + NA +++VLTTFD DE  +A+LRAGA GFL K A ++ ++ A+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDSVLAPSTTRRMLDHLPTARAGHEAS--PLLQR---LTARERDVLLEIAHGHSNAETA  175
             GD+ L++++++ ++ +L   R G+ A+   L+ R   LT RE DV+L  A+G  N   A
Sbjct  121  KGDTSLSAGAAKTVVSDLR--RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  176  QRLFLSEATVKTHVAHLLAKLEVRDRVQAVIFAYENGLV  214
            + LF+S ATVKTH+ + ++KL+ RDR Q V +A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

501) SACE_1225 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 139/219 (64%), Gaps = 7/219 (3%)

Query  5    IRVVVVDDEPMVCAHLRTILGSAEDVEVVGDAQDGAAGVEAVVRLRPRVVLMDLRMPGVD  64
            I VV+VDD++M+ A LR IL  A ++ V+G+A DG ++   +   RP VVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLTAIERIAKLPEAPAV--VALTTFDADQYVLRALRAGASGFLVKSTPPEDLIGLVRVAA  122
            G+ A   +   P+  AV  + LTTFD+D+ VL ALRAGA GFL KS+ +E LI+ V   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGHTVLSLEATRRLVAA-SADEHGQRASALVR---DLTEREREVLACLGEGLSNAQIAER  178
             G+T LS  A++ +V+      ++     L+     LT+RE +V+   + GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLVSR  217
            LF+S ATVK H++R+MTKL+  +R Q   +A+ +GLV+R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

502) SVEN_3401 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 145/218 (67%), Gaps = 3/218 (1%)

Query  1    MIRVLIVDDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVAQVAALRPDVVLMDIRMPEL  60
            MI V++VDDQ M+R G+  +L   ++I V+GEA +GR A A + + RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIDATREIVaad--adaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVV  118
            +G++AT  + A       ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEALLAPTVTKRLITEFAKAPGSSPRPPAMAQIGelteretevlvlIAQGLSNAEIAD  178
            A G++ L++  +K +++++ +   S+     +A+ + LT+RET+V++  A+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  HLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEAGLV  216
            +L ++ +T+KTH++R + KL  RDR Q   +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

503) Ndas_4857 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 99/233 (43%), Positives = 152/233 (66%), Gaps = 19/233 (8%)

Query  1    MIRVLLVDDQPLVRTGVRALLERDEGIEVVAESQNGREALVDIDRHRPDVVLLDLQMPVM  60
            MI V+LVDDQ+++R+G+R++LE D GI V++E+ +GR A+  I   RPDVVL+DL+MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAVLRELGRRGGPAPGRSTNAHVDTSTDHGVRVVVLTTFGEDDNVFTALRLGASGFLL  120
            DG++    L  R++P               ++VR++VLTTF+ D++V++ALR GA GFL 
Sbjct  60   DGVGATAAL--RADPDL-------------NAVRILVLTTFDGDEEVLAALRAGADGFLA  104

Query  121  KDAGPRQLRDAVRTVAAGDALLSPGVTRRVIERL---ADTAVAPGSASRLDVLTGRERDV  177
            K A++  L  AV +VA GD+ LS+G ++ V+  L   + +A      +R   LT RE DV
Sbjct  105  KSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV  164

Query  178  LALVGRGMSNQEIGAALHLSPATARTHVGRLLAKlgvrdrvglvvvAYETGLV  230
            +   +RG+ N  I+  L +SPAT +TH+ R ++KL  RDR  LV +A+ +GLV
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

504) SGR_3294 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (447),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 92/215 (43%), Positives = 150/215 (70%), Gaps = 7/215 (3%)

Query  1    MLIADDEAMVRAGVRAILARDPHVEVVAEAGDGHEAIALTRAHRPDVVLMDIRMPGLDGL  60
            +++ DD+AM+RAG+R+IL  D+ + V++EA+DG+ A+A+ R+ RPDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   TAAARLHRES--ATVGLIMLTTFGQDEYVTRALEEGADGFLLKADDPRELLNGVRAVGAG  118
             A+A L+ ++   +V +++LTTF+ DE V  AL  GADGFL K+ D+  L+ +V AV+ G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  GAYLSPRVAGRVIAGMRAH-RAAHPHRSLAR---LTEREREVLAGLGAGLSNAEIASRLH  174
            ++ LS+  A  V++++R + R+A     +AR   LT+RE +V+ G + GL N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  175  LVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV  209
            +  +TVK+H++  ++KL AR+R +    A+ ++LV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

505) Tcur_4491 in NC_013510


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 150/222 (68%), Gaps = 1/222 (0%)

Query  1    MIRVMLVDDQELVRTGFRMVLDAQPDIEVVAEAGDGAQVVDLLRAHTTDVVLMDVRMPRV  60
            MI V+LVDDQ ++R+G+R +L+ +++I V++EA+DG     ++R+   DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIGALPAERRPRVIILTTFDLDEYAFAAIKAGASGFLLKDAGPAQLIEAIRAV  120
            DG+ AT  + A P     R+++LTTFD DE  +AA++AGA GFL K A++  LI A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HSGDAVVAPSTTRRLLDRFAVHLPDaeqqsaagalaaltarerEVLHLVARGLSNAEIAG  180
              GD+ +++++++ ++  +  +   A +    +  A+LT RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  RLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLVKRGQ  222
             L +S ATVKTH+ R +TKL  RDR Q V +A+ +GLV+R++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

506) BN6_50110 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 144/219 (66%), Gaps = 5/219 (2%)

Query  3    IRILIADDEALLRMAFSTVLEAQPDMTPVGEAADGDQAVRLARELSPDVVLMDVRMPGTD  62
            I +++ DD+A++R ++  +LE ++++  +GEAADG  A  + R   PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRQVVRACPR---TRVLILTTFDLDDYAFAGLRAGASGFLLKNTRPEELLTAIRDV  119
            G+ AT   +RA P     R+L+LTTFD D+  +A+LRAGA GFL K++ +E L++A+  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AAGDAVVSPRITRRLLESFRPHLPDGTRAERDKRLSRLSAREREVLVQVGRGLSNTEIAA  179
            A GD+ +S+  ++ ++  +R +   +T  E   R + L+ RE +V++  +RGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  TLHLAEATVKSHLGRILPKLELRDRIQAVIFAYESRLVH  218
             L ++ ATVK+HL R + KL+ RDR Q V +A+ S LV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

507) AMIS_66170 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 95/235 (41%), Positives = 144/235 (62%), Gaps = 29/235 (12%)

Query  1    MIRILLVDDHPVVRMGLRGMLDAEPDLTVIGEASSGSEGVALALAERPDIVLMDLRMPDG  60
            MI ++LVDD++++R GLRG+L+ ++++ VIGEA+ G  + A+  + RPD+VLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATAQILagqpraagagpagfgaaesgggSPVRVMVLTTYESDRDILRAIEAGASGY  120
            DGV ATA +                     + ++VR++VLTT+++D ++L A+ AGA G+
Sbjct  60   DGVGATAAL-----------------RADPDLNAVRILVLTTFDGDEEVLAALRAGADGF  102

Query  121  LLKDATPaeladavraaaRGETVLAPSVASTLVRQVRTPA-----------PPALSARET  169
            L K A +  L  AV A A+G+T L+++ A T+V ++R  +            ++L+ RET
Sbjct  103  LAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRET  162

Query  170  EVLKQVAAGLTNAEIGKRLFISEATVKTHLLRIFNKLGVADRTAAVTTAMRHGLL  224
            +V+   A GL N  I++ LFIS ATVKTHL R   KL   DR   V+ A R GL+
Sbjct  163  DVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

508) SCH10.16c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 90/224 (41%), Positives = 145/224 (65%), Gaps = 10/224 (4%)

Query  3    IRVLIADDQMMVREGFSVLLNAMPDIEVAGEAVNGREAVAKVRELSPDVVLMDIRMPELN  62
            I V++ DDQ M+R G+  +L+  ++I V GEA +GR A A +R   PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATREIVAAD--STSKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  120
            G+ AT  + A    ++ ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGEALLAPSITKRLITEFSKLSETPR---LMPSAQAAYGDLTDRETEVLVLIAQGLSNGE  177
             G++ L+++ +K +++++ + + ++    L++ + +    LT+RET+V++  A+GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDNVS  176

Query  178  IAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  221
            IA  L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

509) ACPL_6885 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 102/217 (48%), Positives = 152/217 (71%), Gaps = 6/217 (2%)

Query  3    ITVLLVDDQHLVRAGFRSLLRRGRDIEVVGEASTGDEAVRAARDLRPDVILMDIRMPGMD  62
            I V+LVDDQ ++RAG+R++L  + +I V+GEA+ G  A    R+ RPDV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATRTILAAE--STTRVIILTTFETDEYVfaalaagasgflTKEVDPDGLRTAVRVVA  120
            G++AT ++ A    ++ R+++LTTF+ DE V+AAL AGA GFL+K  D+++L +AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDALLSPSVTRRVVGQFTQYADKTPERD---RLTVLTDREREVVALVATGLSNDEIAAR  177
             GD+ LS++ ++ VV+++ + +  + + +   R + LT+RE +VV   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LVISPLTAKTHITRAITKLGVRDRVQLVIIAYQDGLV  214
            L ISP T KTH+ RA+TKL  RDR QLV IA++ GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

510) SACTE_0675 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 100/220 (46%), Positives = 152/220 (70%), Gaps = 11/220 (5%)

Query  3    VSVLLVDDEPLVRAGLRAVLEAQQDIevvgeaadgaavIPLVRRLTPDVIAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE + +I V+GEAADG + ++++R   PDV+ MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLRAVPQ--PPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT A LRA P+  + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ASGESLLFPAAVRQLAAEYGTSEARAAMD------RAALTERESAVLRLMARGLSNAEIA  174
            A G++ L ++A + + ++     +R+A D       A+LT+RE+ V+   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  AELVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGFVA  214
             +L ++  TVKTH++  ++KL ARDR Q V  A+ SG+V 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

511) SCAB_43741 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 146/215 (68%), Gaps = 10/215 (4%)

Query  3    IRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLD  62
            I V++ DDQ++IR+GLR +L+ ++GI V+GEAADGR A  + R  RPDV L D+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAT-RLVAGPDVADPLAVVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSA  121
            G+ AT  L A+PD+ +++ ++V+TTFD DE V +ALRAGA GFL K ++++ L  AV + 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  SEGEALIAPSVTVRLLQAFADVPAGRPVAQ-----PVSPVTAREEQVLLSVARGLTNTEI  176
            + G++ ++++ +  ++  +     GR+ ++       + +T RE +V+L+ ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLR--RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  177  ADALHISLSTVKTHLASLMAKLGARNRVEIAMWAY  211
            A  L IS +TVKTHL   M+KL AR+R ++   A+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

512) Nos7107_3580 in NC_019676


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 137/207 (67%), Gaps = 4/207 (1%)

Query  1    MIRVLLVDDQNLIRQGlkellklePDLEIVGEAENGAIAVDLAAKLQPDVVLMDIRMPIM  60
            MI V+LVDDQ +IR GL+ +L   +++ ++GEA +G  A  +    +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATQAIH--QNFGNIKILILTTFDDDEYVSAALQHGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT A++   ++  ++IL+LTTFD+DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  YKGYTQLGPGIVKKLLNQFPSGVQTQSE-PVPPSLTELTPREKEVLKLIATGASNREIAK  177
             KG T L++G  K +++++    ++ ++  + +  + LT RE +V+   A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELYISEGTVKNHVTNILNRLSLRDRTQ  204
            +L+IS +TVK H+   + +L  RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

513) AMIS_79770 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 147/218 (68%), Gaps = 7/218 (3%)

Query  6    IRVLVVDDQRMLRESFAVLLNVQPDIEVVGEASNGEEAVRQARDLNPDVIMMDVRMPILD  65
            I V++VDDQ M+R ++  +L+ +++I V+GEA++G  A    R+  PDV++MD+RMPILD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLKATRRILAHDP---GIKVLMLTTFDEDEYVHEAIRAGAKGFLLKDSSAHQLADAIRTT  122
            G+ AT   L  DP   ++++L+LTTFD DE V  A+RAGA GFL K + ++ L  A+ + 
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  VSGGAVLAPSVTNRLMEDFSQRSAVPALSS--ARLASLTNQEVRVLGLIARGMSNAEIAG  180
              G++ L+++ ++ ++ D+ +R+  ++     AR A+LT++E  V+   ARG+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  HLTVGEQTVKTHVSRILTKLNLRDRTQAAVVAYETGLV  218
            +L ++  TVKTH++R +TKL+ RDR Q   +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

514) FRAAL0524 in NC_008278


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 89/197 (46%), Positives = 133/197 (68%), Gaps = 5/197 (2%)

Query  11   VIAEAGTGAQAVRLARHLRPDVVLMDIRMPIMDGLEAMRIIAADPGTAATRVLVVTTFDQ  70
            VI+EA+ G  A  + R  RPDVVLMD+RMPI+DG+ A   + ADP+  A R+LV+TTFD 
Sbjct  28   VIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDG  87

Query  71   DEHVFAALRGGASGFVLKDTRPEDLLAAIRIVAAGDALLTPSVTRRLIAEFAQRPQRPVR  130
            DE+V+AALR+GA GF+ K + +E L+AA+  VA GD+ L+++ ++ +++++ +R  R+  
Sbjct  88   DEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDL-RRRGRSAT  146

Query  131  GeeltrltererevlvQV----AAGLSNSEIARRLFVGVTTVKTHVSRLLTKLGARDRAQ  186
            + EL   T    +   +V    A GL N  IAR LF++ +TVKTH++R +TKL ARDR+Q
Sbjct  147  DVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

Query  187  LVVAAYESGVAVPGAGP  203
            LV  A+ SG+   +  P
Sbjct  207  LVSIAFRSGLVNRAEHP  223

515) Isova_2915 in NC_015588


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 94/209 (45%), Positives = 140/209 (67%), Gaps = 11/209 (5%)

Query  22   RAGLGLILGGSPDLEVVGEAPDGAAAVELVTRLRPDVVLMDIRMPRLDGLEATRRLVAVG  81
            RAGL  IL   +++ V+GEA+DG +A  ++   RPDVVLMD+RMP LDG+ AT  L A  
Sbjct  14   RAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  82   --VPSRVIVLTTFDTDDMVLEALRVGAAGFLLKDTPPDRLvaavraaaaGEPTLSPSVTS  139
               + R++VLTTFD D+ VL ALR GA GFL K + ++ L+AAV A A G+ +LS++ + 
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  140  QLIAAVSQTSAPDGRRAAE----SRVAALTEREREVALAVARGLSNAEIAGELYMSVPTV  195
             +++ + +     GR A++    +R A+LT+RE +V L+ ARGL N  IA +L++S +TV
Sbjct  133  TVVSDLRRR----GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATV  188

Query  196  KTHVSRILTKLDAANRVQAAIVVHDAGLV  224
            KTH++R +TKL+A +R Q   +   +GLV
Sbjct  189  KTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

516) SGR_2250 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 145/220 (66%), Gaps = 3/220 (1%)

Query  6    IRAVIADDQMMVRQGFTVLLNAEPDIEVVGQAVNGLDAVAKVAELAPDVVLMDIRMPELG  65
            I  V+ DDQ M+R G+  +L+ +++I V+G+A +G  A A +    PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATRRI-TSAEGSAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVA  124
            G+ AT  + + ++ +AV++LVLTTFD DE V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGDALLSPNITKRLIVEFSRTA-GAPRPPLKARVGelteretevltlIAGGLSNAEISRQ  183
             GD+ LS+  +K ++ ++ R + +A    L AR + LT+RET+V+   A GL N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLVRPA  223
            L+++  TVKTH+ R + KL  RDR Q   +A+ SGLV  A
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

517) AMIS_79550 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 95/217 (44%), Positives = 150/217 (70%), Gaps = 6/217 (2%)

Query  4    ISLLLVDDQELLREGMAMVLGQAPGLRIVGEAgdgragallardlrpdVVLMDVRMPIMD  63
            I ++LVDDQ ++R G+  +L + +G+R++GEA+DGR++  + R+ RPDVVLMD+RMPI+D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRDIVTHC--PGTRVLILTTFDLDEYAFNGLRAGASGFLLKDAPSAELVAAVRTVA  121
            G+ AT  + ++    + R+L+LTTFD DE  + +LRAGA GFL K A S  L+AAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  GGEAVVSPRITRTLLDHYQGARTPAAGTTLV---DDLTAREREVLVAIGRGLSNPEIAGE  178
             G++ +S+  ++T++ + +    +A++  L+     LT RE +V+++ +RGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFLSESTVKTHVGRVLAKLGVRDRVHAVIWAHTHGLV  215
            LF+S +TVKTH+ R ++KL  RDR + V  A   GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

518) MLP_16340 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (444),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 97/224 (44%), Positives = 147/224 (66%), Gaps = 11/224 (4%)

Query  1    MIGVVLADDQALIRGGLRAILDAEPDIDVLaeaangreaaraareQCADVVLMDIEMPDV  60
            MI+VVL DDQA+IR+GLR+IL+ +++I V++EAA+GR A    R   +DVVLMD+ MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIDGIRLTAAARPEA-----KVLVLTTFDLDEYVFAALKAGASGFLLKTTPPAELAQAI  115
            +G+++   TAA R+++     ++LVLTTFD DE V+AAL+AGA GFL K++ +  L  A+
Sbjct  60   DGVGA---TAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  116  RVCHDGQMLFAPEVTRRLVDSYVRRRPTATGVP--EPLQCLTARELDVFLALAKGLSNAE  173
                 G+  +++  ++ +V    RR  +AT+V        LT RE DV L+ A+GL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IGARLYLGEATVKTHVTRILAKLGLRDRVQAVVLAYECGAVAPS  217
            I+  L+++ ATVKTH+ R ++KL  RDR Q V +A+  G V  +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

519) Caci_7812 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 95/224 (43%), Positives = 138/224 (62%), Gaps = 9/224 (4%)

Query  5    VLIADDQVLVRTGFRMILTANGIEVAGEASDGLEAVEAAARLKPDVVLMDIRMPNLDGLE  64
            V++ DDQ ++R+G+R IL   GI V GEA+DG  A       +PDVVLMD+RMP LDG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  65   AARRILAADP---AIRILMLTTFDLDKYVYDALAAGASGFLLKDVTPEHLVASVRLVDTG  121
            A+   L ADP   A+RIL+LTTFD D  V  AL AGA GFL K   +E L+A+V  V  G
Sbjct  64   AT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  122  DALLAPSITRRLVEKFAAPPAEDAGGAKASPAVHRDLAALTPREREILALMGRGLSNTEL  181
            D+ L+++ ++ +V  +       ++    + +     A+LT RE +++   +RGL N  +
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIART-----ATLTHRETDVVLGAARGLDNVSI  177

Query  182  AARLVLSEATVKTHVAHIFTKLSLRDRAQAVVVAYETGLVAPGD  225
            A  L +S ATVKTH+ +  TKL  RDR+Q V +A+ +GLV  ++
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

520) Cfla_2391 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 98/229 (43%), Positives = 155/229 (68%), Gaps = 13/229 (5%)

Query  7    VRVALVDDQQLVRAGFRMVIDSQPDLEVVLEAGDGAQAVRALDPAARNVTGPVDVVLMDV  66
            + V LVDDQ ++RAG+R +++ ++++ V+ EA+DG  A  A+  ++R      DVVLMD+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAF-AVIRGSRP-----DVVLMDL  54

Query  67   RMPTMDGLEATERIVARGTDDAPAPRVIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEEM  126
            RMP +DG+ AT  +  R+  D  A R++VLTTFD DE VLAA+RAGA GFL K A +E +
Sbjct  55   RMPILDGVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  127  LAAIRTVHRGDAVIAPSSTRRLLEHLVTalpgdapaatadpahqavaQLTEREREVLVLM  186
            +AA+ +V +GD+ +++++++ ++ +L       + +AT        A LT+RE +V++  
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGA  168

Query  187  ARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVVAYEAGLV  235
            ARG  N  I++DLF++ ATVKTH+ R ++KL ARDR Q V +A+ +GLV
Sbjct  169  ARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

521) Sros_4744 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 140/217 (65%), Gaps = 14/217 (6%)

Query  6    IRLMIVDDHPVVRDGLRGIFHGVPDIEVVAEAADGHQALAQTRATRPDVVLMDLRMPGLD  65
            I +++VDD++++R GLRGI+++ ++I V++EAADG+ A+A  R++RPDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVGAIERLRSEH--PEVHVIVLTTYDTDADVSRALAAGVAGYLLKDAPREELQAAVRTAA  123
            GVGA   LR++     V+++VLTT+D D +V  AL AG  G+L K A  E L AAV + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGGRILAQRITSQLLDGFGRKRRASP-----------SPRELEVLRLIARGAANKEVARA  172
             G+  L+   +  ++ ++ R+ R++            + RE +V+   ARG  N  +AR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI  209
            L+IS +TVKTHL++  +KL   +R+  V +A    L+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

522) Xcel_1619 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 142/218 (66%), Gaps = 4/218 (1%)

Query  5    VRVLVCDDQALIRTGFTTIIDAQPDLEVVGECGDGRTAVHLAGRLRPDVVVMDVRMPGLD  64
            + V++ DDQA+IR+G+  I++ ++++ V+GE +DGR+A  +    RPDVV+MD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVPDPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLDGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGSALLAPEVTRRLVG---RYASRVAPPEPAPADGPLTPRELDVLRLLAEGLSNAEIAAA  181
             G + L++  ++ +V+   R +   +  E  +  + LT RE DV+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGLVG  219
            L I+  TVKT ++R +TKL+ RDR Q V  A+++GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

523) REQ_33740 in NC_014659


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 90/222 (41%), Positives = 147/222 (67%), Gaps = 6/222 (2%)

Query  1    MIRVALVDDQQLVRAGFRMVIDSQPDLTVVLEASDGAAGVAELERTAADVVLMDVQMPHL  60
            MI V LVDDQ ++RAG+R +++ ++++ V+ EA+DG ++ A +  + +DVVLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRLTARDD--SPKVVVLTTFENDEYVMSAISAGASGFLLKDVPPEELLAAIRTV  118
            DG+ AT  L A  D  + +++VLTTF+ DE V++A+ AGA GFL K   +E L+AA+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HRGDAVIEARSTRKL---LQHVGPMLSDSAAPSLPEDMTPREIEVLEAMAHGLSNSEIAQ  175
             +GD+ + A +++ +   L++ G   +D    +    +T RE +V+ + A+GL N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  KFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLVRPQD  217
             + +S ATVKTH+ R ++K  +RDR Q V  AF+ GLV   +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

524) Sked_08490 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 93/229 (41%), Positives = 151/229 (66%), Gaps = 12/229 (5%)

Query  11   IRVAIVDDQQLLRAGFRMVIDSQPDLEVVVEAGDGAQAVRLLTDHPVDVVLMDVRMPTMD  70
            I V +VDDQ ++RAG+R +++ ++++ V+ EA+DG  A  ++ +   DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  71   GLVATAQLTALWEARGDEAPRIIVLTTFDLDEYALEAIRSGASGFLLKDAPPEEMLAAIR  130
            G+ ATA   AL+   + +A RI+VLTTFD DE  L A+R+GA GFL K A +E ++AA+ 
Sbjct  61   GVGATA---ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  131  TVHSGDAVIAPSttrrlldr---lvttlPEEQLVDSGQASAVDSLTEREREVLVLMARGR  187
            +V  GD+ +++++++ ++        +  + +L+         +LT+RE +V++  ARG 
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR-----TATLTHRETDVVLGAARGL  172

Query  188  ANQEIASDLFVAEATIKTHVGRILSKLGARDRVQAVVTAYETGLVRPGE  236
             N  IA DLF++ AT+KTH+ R ++KL ARDR Q V  A+ +GLV  +E
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

525) SAV_1988 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 142/210 (68%), Gaps = 3/210 (1%)

Query  16   RAGLSLMMGGAADIEIVGEAADGSEVEQLVDRTRPDVVLMDIRMPTLDGLAATELLRGRA  75
            RAGL  ++ +A+ I ++GEAADG     ++  +RPDVVLMD+RMP LDG++AT  LR+ +
Sbjct  14   RAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  76   D--APQVVVLTTFHADEQVLRALRAGAAGFVLKDTPPAQLLDAVRRVAGGDPVLSPAVTR  133
            D  A +++VLTTF++DE+VL ALRAGA GF+ K + +  L+ AV  VA GD  LS++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  134  QLMLHAAGGSPdtrratardriaaLNDREREVAVAVGRGGSNAAIAAELYMSVATVKTHV  193
             ++ +    +  +       R A+L +RE +V ++ +RG  N +IA +L++S ATVKTH+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  194  SRILAKLDLNNRVQIALLTYDAGLLEADGH  223
            +R ++KL+  +R Q+  +++ +GL++   H
Sbjct  193  NRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

526) F750_1047 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 100/220 (46%), Positives = 150/220 (69%), Gaps = 11/220 (5%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQDDIevvgeaadgaavIPLVNRLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE + +I V+GEAADG + ++++   RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRVVLRTVTD--PPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT   LR+  D  + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGETLLFPAAVRQLAAEYGTSKARAAMD------RAALTTREAAVLRLMARGLSNSEIA  174
            A G+T L ++A + + ++    ++R+A D       A+LT RE+ V+   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  AELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFVA  214
             +L ++  TVKTH++  ++KL ARDR Q V  A+ SG+V 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

527) O3I_027315 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 151/219 (69%), Gaps = 11/219 (5%)

Query  1    MITVLLVEDQALVRAGFRMVVDSQPDLCVIGEAGDGESGVAAAARLGPDVVVMDVRMPRL  60
            MI V+LV+DQA++RAG+R +++ ++++ VIGEA+DG S+ A      PDVV+MD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATRRLLASA--HPPKVLMLTTYDLDDYAVAAVRAGASGFLLKDAPPEQFLSAVRSV  118
            DG++AT  L A +  ++ ++L+LTT+D D+  +AA+RAGA GFL K A +E +++AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HAGDAVLAASTTRRLLDRL------APPIDPAARRLVATLTERETAVLRVLARGLSNAEI  172
              GD+ L+A++++ ++  L      A  ++  AR   ATLT+RET V+   ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR--TATLTHRETDVVLGAARGLDNVSI  177

Query  173  ATVLAVGEGTVKTHVRHILTKLGVRDRVQAVIVAHEAGL  211
            A  L ++ +TVKTH+ + +TKL  RDR Q V +A  +GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

528) VAB18032_23605 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 97/217 (45%), Positives = 152/217 (71%), Gaps = 3/217 (1%)

Query  3    VRVVIVDDQALVRAGFRMVLDSQPDLEVVGEAIDGADALRLLSRVEADVVVMDIRMPTMD  62
            + VV+VDDQA++RAG+R +L+ ++++ V+GEA DG  A+ ++    +DVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRLCADRPAGPPRVLVLttfdteadafaaLRAGASGFLLKNVPPEELLAAIRVVA  122
            GV AT  L AD    + R+LVLTTFD + + +AALRAGA GFL K+  +E L+AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  QGDSVVAPSITRRLLD--RFAGQLGTTPGEDPRLAQLTEREREILLLVAQGLANAEIAER  180
            +GD+ ++++ ++ ++   R  G+ +T     +R A LT+RE +++L  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  VHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV  217
            + ++ ATVKTH+ R ++KL+ RDR Q V +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

529) SCATT_48680 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 146/219 (67%), Gaps = 4/219 (1%)

Query  1    MTTVLVVDDQPLQRYGFRVLLESVPGTDVVGESAHGAEAVRMAAELRPDVVLMDIRMPGM  60
            M  V++VDDQ++ R G+R +LE  +G  V+GE+A+G  A  +    RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRHIVAAG--NRSRVLVLTTFDLDEYVYAALRAGASGFLLKDARPEELLAGIRAV  118
            DG+ AT  + A    N  R+LVLTTFD DE V AALRAGA GFL K A +E L+A++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AVGDAVIAPALTRRLLDAYIEPAARHLSDPAENPRLSALTGRELEILGAIAKGWTNSEIA  178
            A GD+ ++++ ++ ++   +   +R  +D    +R ++LT RE +++ + A+G  N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AHFVLSESTVKTHVGRVLAKIGARDRVQAVIFAYDIGLV  217
             ++ +S +TVKTH+ R ++K+ ARDR Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

530) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 146/219 (67%), Gaps = 4/219 (1%)

Query  1    MTTVLVVDDQPLQRYGFRVLLESVPGTDVVGESAHGAEAVRMAAELRPDVVLMDIRMPGM  60
            M  V++VDDQ++ R G+R +LE  +G  V+GE+A+G  A  +    RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRHIVAAG--NRSRVLVLTTFDLDEYVYAALRAGASGFLLKDARPEELLAGIRAV  118
            DG+ AT  + A    N  R+LVLTTFD DE V AALRAGA GFL K A +E L+A++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AVGDAVIAPALTRRLLDAYIEPAARHLSDPAENPRLSALTGRELEILGAIAKGWTNSEIA  178
            A GD+ ++++ ++ ++   +   +R  +D    +R ++LT RE +++ + A+G  N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSD-LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AHFVLSESTVKTHVGRVLAKIGARDRVQAVIFAYDIGLV  217
             ++ +S +TVKTH+ R ++K+ ARDR Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

531) Kfla_6941 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 149/222 (68%), Gaps = 9/222 (4%)

Query  1    MITVVLADDQELVRSGFAMILDAQPGIEVVGEAGDGTEAVELVRALRPEVALLDVRMPRT  60
            MI VVL DDQ ++R+G+  IL+ ++GI V+GEA+DG  A  ++R+ RP+V L+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAARAICAG---TSTKVIMLTTFDSDDYVYDALYAGASGFLLKDVRRDDLVHAVRVV  117
            DG++A+ A+ A+    + ++++LTTFD+D+ V  AL AGA GFL K    + L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGESLLAPSVTRRLIADLTRNRPRAGRVAEL----DALTSrereillllgrglSNAEIA  173
            A G++ L+++ ++ +++DL R R R++   EL     +LT RE +++L  +RGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  AALTVSEHTVKTHVSNTLTKLGLRDRVQAVIAAYETGLITPT  215
              L +S  TVKTH++ ++TKL  RDR Q V  A+ +GL+  +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

532) NOCYR_3983 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 93/220 (43%), Positives = 148/220 (68%), Gaps = 2/220 (0%)

Query  3    ITVLIADDQAMVRQGFGALLAAQPDISVIGDAPDGKVAVAEAKRLRPDVVLMDVRMPEMN  62
            I V++ DDQAM+R G+ ++L  +++I VIG+A+DG+ A A  +  RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAARAILAAGFDPPVRVLMLTTFDIDDYVYEALSIGASGFLLKDAPADELVRAVRVVA  122
            G++A+ A+ A     +VR+L+LTTFD D+ V  AL  GA GFL K A ++ L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGQALLAPTVTRRLIADVTSrraaarakp-apalaaltprerEVLELIAKGMSNTEIAEA  181
             G++ L++  ++ +++D+  R  +A      +  A+LT RE +V+   A+G+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVAEQTVKTHVSKVFAKLDLRDRAQAVVLAYESGLVTPG  221
            LF++  TVKTH+++  +KL+ RDR+Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

533) SCATT_p15210 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 157/219 (72%), Gaps = 5/219 (2%)

Query  4    LTVLLVDDEPLVRVGLRAVLEAQPdiavvgeaadgaaviPLVRQLRPDVVVMDVRMPLMD  63
            + V+LVDD++++R GLR++LE +++I V+GEAADG + ++++R  RPDVV+MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRTVLRTIA--APPKIVVVTTFENDEYVYGALRAGADGFLLKRSRPAEIVHGVRLV  121
            G+ AT + LR+ +   + +I+V+TTF+ DE V +ALRAGADGFL K + +  ++ +V  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AEGDSLLFPAAVRELAASYGRQHGNTAARTVMERAA-LTDREGEVLRLMARGLSNAEIAA  180
            A GD+ L ++A + + +   R+  +++   ++ R+A LT+RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  HLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFVS  219
            +L ++  TVK+H++  ++KL ARDR Q V  A+ SG+V+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

534) yxjL in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 157/219 (72%), Gaps = 5/219 (2%)

Query  4    LTVLLVDDEPLVRVGLRAVLEAQPdiavvgeaadgaaviPLVRQLRPDVVVMDVRMPLMD  63
            + V+LVDD++++R GLR++LE +++I V+GEAADG + ++++R  RPDVV+MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRTVLRTIA--APPKIVVVTTFENDEYVYGALRAGADGFLLKRSRPAEIVHGVRLV  121
            G+ AT + LR+ +   + +I+V+TTF+ DE V +ALRAGADGFL K + +  ++ +V  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  AEGDSLLFPAAVRELAASYGRQHGNTAARTVMERAA-LTDREGEVLRLMARGLSNAEIAA  180
            A GD+ L ++A + + +   R+  +++   ++ R+A LT+RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  HLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFVS  219
            +L ++  TVK+H++  ++KL ARDR Q V  A+ SG+V+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

535) Mic7113_6279 in NC_019738


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 86/207 (42%), Positives = 137/207 (67%), Gaps = 8/207 (3%)

Query  13   MIRILLVDDQGLIRQGLRALLELETDLEVVGEAENGQSAIALVETLHPDVVLLDIRMPVM  72
            MI ++LVDDQ++IR GLR++LE ++++ V+GEA +G+SA+A++   +PDVVL+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  73   DGVAVTREI--GQRFTDTKVLVLTTFDDEQYVAQALHYGAKGYLLKDTPSEELAAAIRAV  130
            DGV+ T  +  +  +   ++LVLTTFD+++ V  AL+ GA G+L K + SE L AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  YKGYTQLGPGLFEKAMpkvptpptnppD----GW-EQLTPREKEVLKLIAAGANNREIAE  185
             KG T L++G     ++ +     ++ D    ++   LT RE +V+   A G +N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  SLYISEGTVKNHVTRILNQLGLRDRTQ  212
             L+IS +TVK H+ R + +L  RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

536) Bcav_2822 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 91/225 (41%), Positives = 151/225 (68%), Gaps = 10/225 (4%)

Query  10   IRVAIVDDQQLVRAGFALVIDSQPDMEVVLEAGDGAQAARLLASHDVDVVLIDVRMPTLD  69
            I V +VDDQ ++RAG+  +++ ++++ V+ EA+DG  A  ++ +   DVVL+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GLAATQRILASPPPGGTAPKIVILTTFDLDEYVLAAIKAGASGFLLKDTPPEEMLAAIRT  129
            G++AT  +   + P+  A +I++LTTFD DE VLAA++AGA GFL K + +E ++AA+ +
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  130  VHAGDAVIAPSSTKRLIEHLAAVLPDEQKTPTTAL----DALTEREREVLVLIARGRTNT  185
            V  GD+ ++++++K ++ +L       + +    L     +LT+RE +V++  ARG  N 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLR---RRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  186  EIGADLFVAEATVKTHVGRILAKLGARDRVQAVVIAYETGLVAPG  230
             I+ DLF++ ATVKTH+ R ++KL ARDR Q V IA+ +GLV  +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

537) Haur_4778 in NC_009972


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 139/219 (64%), Gaps = 14/219 (6%)

Query  1    MIRVAIVEDQRIVREGLIAVLEDEATIEIVGEAANGQAALDLYAQELPDVVLMDLQMPVM  60
            MI V +V+DQ ++R GL ++LED A I ++GEAA+G++A+ +     PDVVLMDL+MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGPTAIGQLC--QRWPQAKVLVLTTYATDEFIWAALRAGAKGYLLKDASADELVSAIQAV  118
            DG  A + L         ++LVLTT+  DE + AALRAGA G+L K A ++ L++A++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGSTHLAPDIAAKLVAGVSN-----------PQPESLTPRELEVLHLLGRGRSNGEIAL  167
            A+G T L+++ A  +V+++             ++  +LT RE +V+   +RG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQLIS  206
            +L I+  TVK H++  + KL A +R + VSIA R  L++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

538) SCAB_10041 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 149/217 (69%), Gaps = 8/217 (3%)

Query  3    VSVLLADDQDMVRSSMRIMIDVEADLKVVGEASDGEAAIGMAARLRPDVVVMDIRMPRMD  62
            + V+L DDQ M+R+++R +++ +A+++V+GEA+DG +A+++    RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATRSIRSASSPPAV--LALTTFDLDEYLFGTLRAGAAGFVLKQDSAATLLEGIRAVA  120
            GV+AT ++R+ +   AV  L LTTFD DE ++++LRAGA GF+ K   + +L+ ++ AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  RGEGFVSPGPTRRLIE--RVSVPEDTPYQL---PAEVTRRERDVLALLGRAMSNTQIAHR  175
            +G+  +S+G+++ ++   R      T  +L    A +T+RE DV+   +R++ N  IA+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  176  LHIEESTVKYHVQNLLTKLDARTRVQAALIASRAGMV  212
            L I  +TVK H++  +TKL+AR R Q   IA R+G+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

539) SAV_7071 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  121 bits (441),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 154/221 (70%), Gaps = 5/221 (2%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavIPLVRQLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG + ++++R  RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLRTVD--RPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT A LR+     + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPASVRQLAAEHGDGGGNRAARAVMERAA-LTDREGEVLRLMARGLSNAEIAG  179
            A G++ L +++ + + ++    G + +   ++ R+A LT+RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  QLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG  220
            +L ++  TVK+H++  ++KL ARDR Q V  A+ SG+V  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

540) AMIS_69820 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 93/222 (42%), Positives = 149/222 (68%), Gaps = 8/222 (3%)

Query  3    IRVLLADDHALVRTGFRVILEMEDDITVVGEASDGAQATDLALSLRPDVVLMDVEMPGVD  62
            I V+L DD+A++R+G+R ILE + +I V+GEA+DG  A  +  + RPDVVLMD+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAT---RRIAAAGGPSVLILTTFDRDDYLFAALQAGASGFLLKNGTPEALTEAVRVIA  119
            G+ AT   R  +   +  +L+LTTFD D+ ++AAL+AGA GFL K++ +E+L  AV  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDALLAPAVTRRVIAGFTAPRQRTP---EPVVRLDELTPREHEVLVLLAGGATNAEIAT  176
             GD+ L+++ ++ V++++   R R++   E + R   LT RE +V++  A G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  GLRLGETTVKTHVSRVLMKLGARDRTQAVVLAYELGVVRPSQ  218
            +L ++ +TVKTH++R + KL ARDR Q V +A+  G+V  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

541) SCATT_p00120 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 146/220 (67%), Gaps = 4/220 (1%)

Query  3    IKVLLVDDQPLMRVAFNLVLESQPDLTVVGEAGDGAEAVRLARRLQPQVVLMDVRMPGVD  62
            I V+LVDDQ+++R ++  +LE ++++ V+GEA+DG  A  + R  +P+VVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATEEIITAC--PETRVLILTTFDLDEYAFAALRAGASGFLIKNALPEELLSAIRTVA  120
            G+ AT  + +       R+L+LTTFD DE  +AALRAGA GFL K+A +E L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  TGDAVVSPRVTRRLL-ETCAHQLPVPEGPSDTRLSPLTARERQILTEVAKGKSNSEIATD  179
             GD+ +S+  ++ ++ +   +  +  +    +R + LT RE +++   A+G  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LHLAEATVKTHLGRVLAKLGLRDRVQAVVFAYETRLVKPT  219
            L ++ ATVKTHL R ++KL  RDR Q V +A+ + LV+ +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

542) yxjL in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 146/220 (67%), Gaps = 4/220 (1%)

Query  3    IKVLLVDDQPLMRVAFNLVLESQPDLTVVGEAGDGAEAVRLARRLQPQVVLMDVRMPGVD  62
            I V+LVDDQ+++R ++  +LE ++++ V+GEA+DG  A  + R  +P+VVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATEEIITAC--PETRVLILTTFDLDEYAFAALRAGASGFLIKNALPEELLSAIRTVA  120
            G+ AT  + +       R+L+LTTFD DE  +AALRAGA GFL K+A +E L++A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  TGDAVVSPRVTRRLL-ETCAHQLPVPEGPSDTRLSPLTARERQILTEVAKGKSNSEIATD  179
             GD+ +S+  ++ ++ +   +  +  +    +R + LT RE +++   A+G  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LHLAEATVKTHLGRVLAKLGLRDRVQAVVFAYETRLVKPT  219
            L ++ ATVKTHL R ++KL  RDR Q V +A+ + LV+ +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

543) CMS_1730 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 150/215 (70%), Gaps = 7/215 (3%)

Query  6    IRVALVDDQALFRTGVRMLISSQPDLEFAGEAANGQEAVELARTERPDVILMDIRMPVMD  65
            I V LVDDQA++R+G+R ++  ++++   GEAA+G+ A  + R  RPDV+LMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIHATAEVLRTADASGERPPRVLVLTTFDLDEsaarairagasgFVLKDADPEFLLAAIR  125
            G+ ATA  LR+   ++  + R+LVLTTFD DE    A+RAGA GF+ K AD+E L+AA+ 
Sbjct  61   GVGATAA-LRAD--PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  126  TVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFA---SLTSREREIFVLAARGLSNAEI  182
            +V  G++ ++A+A++ ++ ++   +R+      +A   +LT RE ++ + AARGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAF  217
            A+  F+S ATVKTH++R ++KL  RDR QLV +AF
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

544) XNR_5271 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 144/220 (66%), Gaps = 6/220 (2%)

Query  1    MITVLLADDQRLVRAGFRSiledeegievvgeaadgeeavaaaralrPDVVLMDIRMPGT  60
            MI V+L DDQ ++RAG+R+ILED     +   A +         +  PDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR-PDVVLMDLRMPIL  59

Query  61   DGLEAARRITADPRLETVRVVILTTFDLDEYVYRALREGVTGFLVKDTEPEELAHAIRVA  120
            DG+ A+  + ADP L++VR+++LTTFD DE V  ALR G  GFL K +++E L  A+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALISPSVTRRLIAEFAGRVAPPPPD----PRLNALTDREREVLRLVAGGLTNDRIA  176
            A+GD+ +S++ ++ +++++  R + ++ D    +R  +LT+RE +V+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  ATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLAYESGLVS  216
              L +SPAT KTH++R MTKL  RDR+QLV +A+ SGLV+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

545) SVEN_3470 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 103/225 (46%), Positives = 146/225 (65%), Gaps = 19/225 (8%)

Query  3    IRVLLADDQALVRAGFRSLLGRAKTLTVVGEAASGEEA---VRQAALLEPDVVLMDIRMP  59
            I V+L DDQA++RAG+R++L  A  + V+GEAA G  A   +R +    PDVVLMD+RMP
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGS---RPDVVLMDLRMP  57

Query  60   GMDGIEATR--RVLAERPATRVIILTTFDTDEHVFEALRAGASGFLTKEVEPAELRRAVE  117
             +DG+ AT   R  ++  A R+++LTTFD DE+V+ ALRAGA GFL+K  ++  L  AVE
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  118  IVAAGDSLLSPGVTRRVIE------RFahrprpaaalhalTARENEVVRLVAEGRSNDEI  171
             VA GD+ LS+G ++ V+       R A      A   +LT RE +VV  ++ +R+ D++
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV--LGAARGLDNV  175

Query  172  AAA--LVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGLVSPS  214
            + A  L ISP T KTH++RA+TKL  RDR QLV  A+  GLV+ +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

546) B005_2367 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 95/217 (44%), Positives = 140/217 (65%), Gaps = 3/217 (1%)

Query  1    MIRVVLVDDQFVVRAGFRVMLEIAEDIEVVGECSDGPSAVELVERLRPDVVCMDVRMPGG  60
            MI VVLVDDQ ++RAG+R +LE   +I V+GE +DG SA  ++   RPDVV MD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATREILARSSGKPPAILVVTTFDLDEYVFKALEVGASGFILKDTPPDDLVEAVRRL  120
            DG+ AT  + A +  ++  ILV+TTFD DE V+ AL  GA GF+ K + ++ L+ AV  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ADGHGLVDHTVTRRVIAEFAK--RRSMNREVSEAHDLLTERELDIVRLLSRGMSNVEIAE  178
            A G+  +    ++ V++++ +  R + + E+      LT+RE D+V   +RG+ NV IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  SLTIEPSTVKSHLGRVMTKIGVRDRLQTVVWAYRNGV  215
             L I P+TVK+HL R MTK+  RDR Q V  A+R+G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

547) Cfla_3337 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 142/218 (66%), Gaps = 4/218 (1%)

Query  12   VLVVDDQPLIRQGIRAVLRGQPGVEVVGEAHDGHSAVRTARRLRPDVTLMDVQMPGMDGV  71
            V++VDDQ++IR G+R++L  ++G+ V+GEA DG+SA    R  RPDV LMD++MP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  72   EATRVICADDD-PPTSVVVLTMYDQDEHVFEALRAGARGLVLKDAPTSELVAAIHAAAAG  130
             AT  + AD D  +  ++VLT +D DE+V+ ALRAGA G++ K A +  L+AA++A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  131  DSLLSPSVTRRLIEEFAR--RPTVRMEATDGPAELTARERDVFRLLVQGLSTAEAAERLT  188
            D+ LS++ ++ ++ ++ R  R++  +E     A LT RE DV     +GL     A  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  189  LGDSTVKSHVQSLYRKLGVRDRVQAVIYAYEHGLVDRT  226
            ++ +TVK+H++    KL  RDR Q V  A+  GLV+R+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

548) SCAB_88801 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 90/211 (43%), Positives = 140/211 (67%), Gaps = 4/211 (1%)

Query  19   RSGFAALLSAQSDIDVVGEAPNGRVGVEVSRRTHPDVVLMDIRMPEMDGLEATRRLLDPP  78
            R+G+ ++L  +++I V+GEA++GR +  V R ++PDVVLMD+RMP +DG+ AT  L   P
Sbjct  14   RAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  79   RGVVHRPRVLMLTTFDIDDYVYEALHAGASGFLLKDAPVAELVQAVRVIAAGDALLAPSV  138
               ++  R+L+LTTFD D+ V  AL+AGA GFL K A    L+ AV  +A GD+ L+++ 
Sbjct  73   D--LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGA  130

Query  139  TRRLIEDMarrrpappgaarL-RLNGLTPREAEVLSLVAQGQSNTEIAARLVVAEQTVKT  197
            ++ ++ D+ RR  ++ +   + R   LT RE++V+   A+G  N  IA  L ++  TVKT
Sbjct  131  AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  198  HMTRLLAKLGARDRAQLVVFAYESGLVVPGE  228
            H+ R ++KL ARDR+QLV +A+ SGLV  +E
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

549) B737_8799 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDHAMFCSGMRALLDTQPDFTCVGEACDGREAVAETARLRPDVAVLDVRMPRL  60
            MI V+L DD+AM+ +G+R++L+ ++++  +GEA DGR A A     RPDV ++D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEAILAAPG-NDTRVLVLTTYDADEYVYRALRAGASGFLLKSLAPEELVAAMRVA  119
            DG++AT A+ A P+ N  R+LVLTT+D+DE V  ALRAGA GFL KS  +E L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALIDPSVTRRLVAKFATVlepaaaeppelarlTSREREVLLLLAGACS--NAEIAR  177
            A+GD+ + ++ ++ +V+ +     +A+         T  +RE  ++L++A +  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV  215
             L ++  TVKTH++R ++KL   DR + V  A+R  LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

550) RAM_45825 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDHAMFCSGMRALLDTQPDFTCVGEACDGREAVAETARLRPDVAVLDVRMPRL  60
            MI V+L DD+AM+ +G+R++L+ ++++  +GEA DGR A A     RPDV ++D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEAILAAPG-NDTRVLVLTTYDADEYVYRALRAGASGFLLKSLAPEELVAAMRVA  119
            DG++AT A+ A P+ N  R+LVLTT+D+DE V  ALRAGA GFL KS  +E L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALIDPSVTRRLVAKFATVlepaaaeppelarlTSREREVLLLLAGACS--NAEIAR  177
            A+GD+ + ++ ++ +V+ +     +A+         T  +RE  ++L++A +  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV  215
             L ++  TVKTH++R ++KL   DR + V  A+R  LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

551) AMES_8798 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDHAMFCSGMRALLDTQPDFTCVGEACDGREAVAETARLRPDVAVLDVRMPRL  60
            MI V+L DD+AM+ +G+R++L+ ++++  +GEA DGR A A     RPDV ++D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEAILAAPG-NDTRVLVLTTYDADEYVYRALRAGASGFLLKSLAPEELVAAMRVA  119
            DG++AT A+ A P+ N  R+LVLTT+D+DE V  ALRAGA GFL KS  +E L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALIDPSVTRRLVAKFATVlepaaaeppelarlTSREREVLLLLAGACS--NAEIAR  177
            A+GD+ + ++ ++ +V+ +     +A+         T  +RE  ++L++A +  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV  215
             L ++  TVKTH++R ++KL   DR + V  A+R  LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

552) AMED_8933 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  1    MIRVLLADDHAMFCSGMRALLDTQPDFTCVGEACDGREAVAETARLRPDVAVLDVRMPRL  60
            MI V+L DD+AM+ +G+R++L+ ++++  +GEA DGR A A     RPDV ++D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEAILAAPG-NDTRVLVLTTYDADEYVYRALRAGASGFLLKSLAPEELVAAMRVA  119
            DG++AT A+ A P+ N  R+LVLTT+D+DE V  ALRAGA GFL KS  +E L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGDALIDPSVTRRLVAKFATVlepaaaeppelarlTSREREVLLLLAGACS--NAEIAR  177
            A+GD+ + ++ ++ +V+ +     +A+         T  +RE  ++L++A +  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV  215
             L ++  TVKTH++R ++KL   DR + V  A+R  LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

553) SBI_04389 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 146/220 (67%), Gaps = 5/220 (2%)

Query  3    IRVLLADDQPLVRAALRMVITDTPDVEVVGEAGDGAEAVRLTGELAPDVVVMDIRMPGMD  62
            I V+L DDQ+++RA+LR ++ D+ ++ V+GEA+DG  A  +     PDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLITTGP--GTTRVVVLTTFDDDDYVYGALRAGASGFLVKDMALDDILAAVRVVA  120
            G+ AT  + ++P   + R++VLTTFD+D+ V +ALRAGA GFL K    + ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDALIAPSVTRRLIKEFaarpattpppr--aELGGITDREREVLTLVGSGLSNAEIADR  178
             GD+ ++++ ++ ++ ++  R  ++      A  + +T+RE +V+   + GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVAPS  218
            L IS AT KT L R ++KL+ARDR QLV +A+ +GLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

554) Tmar_1372 in NC_014831


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (440),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 145/218 (67%), Gaps = 6/218 (2%)

Query  63   VLVADDHAILRDGIRTLLEAQPDIAVVGEAADGREAVELARRLRPDVVLLDIGMPGMNGI  122
            V++ DD+A++R G+R +LE +++I V+GEAADGR A  + R  RPDVVL+D+ MP ++G+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  123  EATRAILKERPE---TRVLILSMHDNEEYIFPILEAGAAGYVLKRSAATELVSALRAVVQ  179
             AT A L+  P+    R+L+L+  D +E +++ L AGA G++ K + +  L++A+ AV +
Sbjct  63   GAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  180  GHTILHPDVAAKVVSGAARRQKGGGPQEGVPRRVDGLTERETEVLTLIAQGLTNQEIADR  239
            G+T L ++ A  VVS+  RR +++   E ++R    LT+RET+V+   A+GL N  IA  
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIAR-TATLTHRETDVVLGAARGLDNVSIARD  180

Query  240  LFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGLIS  277
            LFIS  TV++H +  M KL+ +D  +L   A+R GL++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

555) Sfla_5560 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (439),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 99/222 (45%), Positives = 151/222 (69%), Gaps = 11/222 (4%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQDDIevvgeaadgaavIPLVNRLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE + +I V+GEAADG + ++++   RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRVVLRTVTD--PPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVNAVRLV  120
            G+ AT   LR+  D  + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGETLLFPAAVRQLAAEYGTSKAHAAMD------RAALTTREAAVLRLMARGLSNSEIA  174
            A G+T L ++A + + ++    ++++A D       A+LT RE+ V+   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  AELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFVAPG  216
             +L ++  TVKTH++  ++KL ARDR Q V  A+ SG+V  +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

556) Cfla_2842 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (438),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 146/226 (65%), Gaps = 10/226 (4%)

Query  1    MTTVLLVDDQPLLRTGFRLVVESEPDLEVVGEAADGRVALSQVAGLAPDVVLMDIRMPGM  60
            M  V+LVDDQ+++R+G+R ++E ++++ V+GEAADGR A++ + G  PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATR--RIVAEHPDSRVLVLTTFDVDDLAFAALRAGASGFLLKSARPDELVDAIRTV  118
            DGV AT   R  ++    R+LVLTTFD D+  +AALRAGA GFL KSA ++ L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGTSVVAPRVLRRMLDLFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLRLIAEGA  178
            A G + +++   + ++  +  +   +A D +   RT+       LT RE DV+   A G 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTAT------LTHRETDVVLGAARGL  172

Query  179  SNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVVT  224
             N  IA +L +S +TVKTH+    +KL ARDR Q V IA+  G+V 
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

557) O3I_003085 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (438),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 145/219 (67%), Gaps = 9/219 (4%)

Query  5    IRVVVVDDEPLARSALTLILGGDPELALVGEAANGEQALAVVREQRPDLVLMDIRMPVRD  64
            I VV+VDD+++ R++L  IL  D+ + ++GEAA+G  A+AV+R  RPD+VLMD+RMP+ D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLDATRELLSRADPP----RVVVLTTFDADEMVLQALRIGAHGFLLKDTPPAEIVSAIKQ  120
            G++AT  L  RADP     R++VLTTFD+DE VL ALR GA+GFL K + +  +++A+  
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  121  VAAGKPMLSPSVTAQLIsvataapsadeaareparralavlTDREREIAEAIGRGLSNSD  180
            VA G   LS++ +  ++  +     +  A+        A LT+RE ++  + +RGL N  
Sbjct  119  VAKGDTSLSAGAAKTVV--SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  181  IAKELHLSVATVKSHISRLLTKLGAENRVQIAILVLTAG  219
            IA++L +S ATVK+H++R +TKL A +R Q+  + + +G
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

558) SBI_08121 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (438),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 144/217 (67%), Gaps = 8/217 (3%)

Query  12   IVLADDERMVRTALRAILSSEPDLEVVGEAGTGAEAIPLVHELRPDVVLMDVRMPEIDGI  71
            +VL DD+ M+R++LR+IL  ++++ V+GEA+ G  A+++++  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  72   RATERILATVPE--PPRVIVVTTFENDSYVYDALRAGASGFLLKRARADELVQAVRLVAR  129
             AT   L + P+  + R++V+TTF+ D  V  ALRAGA GFL K A ++ L+ AV  VA+
Sbjct  63   GATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  130  SDSLLFPaavralaaa-yaTGRDGQAQALRDR---LSEREAEVLRLMTTGLSNAEIADRL  185
            +D+ L ++A +++ +     GR +    L  R   L++RE++V+   + GL N  IA  L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  186  TVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFVK  222
             ++PATVKTH+   ++KL  RDR Q V  A+  G+V+
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

559) SCATT_p17130 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (438),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 92/216 (43%), Positives = 141/216 (66%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLVRTGLVTIIGAQPDMEVVGECADGRTAVDLARKAEPDVVVMDIRMPVLD  64
            I V++ DDQ ++R+GL  I+  ++++ V+GE ADGR+A  + R + PDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRLLAgvgvphpvkvlvvTTFNLDEYVYEALRVGASGFLLKDAPPARLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALR GA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPDVTRRLVGHYAARIRPAENT---SRDIPLTPRELEVLRLIAEGLSNSEIAAA  181
             G + L ++ ++ +V++   R R+A +    +R   LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILAKLQLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R ++KL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

560) yxjL in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (438),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 92/216 (43%), Positives = 141/216 (66%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLVRTGLVTIIGAQPDMEVVGECADGRTAVDLARKAEPDVVVMDIRMPVLD  64
            I V++ DDQ ++R+GL  I+  ++++ V+GE ADGR+A  + R + PDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLEATRLLAgvgvphpvkvlvvTTFNLDEYVYEALRVGASGFLLKDAPPARLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALR GA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPDVTRRLVGHYAARIRPAENT---SRDIPLTPRELEVLRLIAEGLSNSEIAAA  181
             G + L ++ ++ +V++   R R+A +    +R   LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILAKLQLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R ++KL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

561) BN159_7322 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 153/221 (70%), Gaps = 5/221 (2%)

Query  9    VTVLLVDDEPLVRAGLRAVLDAQPDIevvgeaadgaavIPLVRSLRPDVVAMDVRMPLLD  68
            + V+LVDD++++RAGLR++L+ +++I V+GEAADG + ++++R+ RPDVV MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GIEATRAVLRTVDD--PPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVNAVRLV  126
            G+ AT A LR+  D  + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  AEGESLLFPASVRQLAAEHGESGanpaara-ameraQLTEREAEVLRLMTRGLSNAEIAA  185
            A G++ L +++ + + ++    G +++        A LT+RE++V+   +RGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  RMVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG  226
             + ++  TVK+H++  ++KL ARDR Q V  A+ SG+V  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

562) Strvi_2207 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 145/222 (66%), Gaps = 12/222 (5%)

Query  1    MTTVLVVDDQQLQRYGFRVLLDSIPETEVVGEAGSGAEAVRKTAELRPDVVLMDVRMPGM  60
            M  V++VDDQ + R G+R +L+  +   V+GEA+ G  A       RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRIAETGGRSSV--LVLTTFDVDEYVHAALRAGASGFLLKDARPEELLAGIHAV  118
            DG+ AT  +    + ++V  LVLTTFD DE V AALRAGA GFL K A +E L+A+++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGDAVIAPALTRRILDEYARHVPARRGDPGED----PRVASLTEREREILVAIGKGWTN  174
            A GD+ ++++ ++ ++ +       RRG ++ D    +R A+LT+RE +++++ ++G  N
Sbjct  120  AKGDTSLSAGAAKTVVSDL-----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  175  GEIAARFVVAESTVKTHVGRVLAKIGARDRIQAVIFAYDRGL  216
              IA  + ++ +TVKTH+ R ++K+ ARDR Q V +A+  GL
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

563) Ndas_2190 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 147/218 (68%), Gaps = 7/218 (3%)

Query  1    MIAINLVDDEALIRAGLAALINAEDDMRVTGQADDGADVPDLVRRTRPDLVLMDVRMPRL  60
            MI + LVDD+A+IRAGL ++++ + ++RV G+A DG     ++R +RPD+VLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIQAtrtlhttlt-hpprVIVLTTFDNDDYVWGALRAGAHGFLLKRTPPEDILAAIRLA  119
            DG+ AT +L++    ++ R++VLTTFD D+ V +ALRAGA+GFL K + +E ++AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  HRGDTLLFPTALRHLaat-----qpaaptpaaravatLTQRESQTLTLMAQGLTNAEIAD  174
             +GDT L + A + + +      ++A+        ATLT+RE++ +   A+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RLFLGTETVKTHVSHILTKLGVRDRTQAVIAAYDSGLI  212
             LF++  TVKTH+++ +TKL  RDR Q V  A+ SGL+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

564) chiR in NC_006087


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 152/219 (70%), Gaps = 7/219 (3%)

Query  9    ILLADDQALVRLGFRMVLEAEPGLCVVGEAIDGVEAVRLAVETRPDVILMDVRMPALDGI  68
            ++L DDQA++R G+R +LE ++G+ V+GEA DG  A  +   +RPDV+LMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  69   EATRRIVAANPE---ARIIILTTFDLDEYAFGGLRAGASGFLLKDARPDDLTaairavaa  125
             AT   + A+P+    RI++LTTFD DE  +++LRAGA GFL K A ++ L AA+ AVA 
Sbjct  63   GATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  126  gdaaVSGRVTRAMLELFADRLPTTTESAAPGGDPAAALTPREREILLAIADGLTNGEIGA  185
            GD+++S+  +++++  +  R  ++T+    +   +A+LT RE +++L+ A GL N  I+ 
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIA--RTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  TFHLTESTVKTHVGRVLSKLHLRDRVHAVIFAYDNGLID  224
             + ++ +TVKTH+ R ++KLH RDR + V +A+ +GL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

565) Osc7112_5589 in NC_019729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 136/208 (66%), Gaps = 8/208 (3%)

Query  1    MIRILLVDDRHIIRRGIKSILECYSDMQVIGEAENGQEAIAQIPILQPDIVLMDIRMPVM  60
            MI ++LVDD+ +IR G+++ILE  ++++VIGEA +G+ A+A I   +PD+VLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATGAI--AQSYPDTKVLVLTTFDDDEYVSQAMRLGAKGYLLKDTEPDELALAIRAV  118
            DGV+AT+A+         ++LVLTTFD+DE V  A+R GA G+L K ++++ L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  YKGHTQLGPGLFEKALMTPAVTNPTVVSPPEL----EQLTPRELEVLRLIASGANNREIA  174
             KG+T L++G   K++++         +  EL      LT RE +V+   A G +N  IA
Sbjct  120  AKGDTSLSAGA-AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  QTLFLSENTVKNYVTNILSRLNLRDRTQ  202
            + LF+S  TVK  +   +++L+ RDR Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

566) Snas_2469 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 90/216 (42%), Positives = 145/216 (68%), Gaps = 10/216 (4%)

Query  5    VLLADDEALIRAGLAAIIdaeadlevvaeaadgvdavaLTKRHRPDVVLMDVRMPNVDGI  64
            V+L DD+A+IRAGL +I++  +   +   A +      + +  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPILDGV  62

Query  65   EATRQILRIPELSP-KIIVVTTFDNDDYVYEALRAGANGFLLKRTPPDDLLAGIRVVARG  123
             AT  +   P+L++ +I+V+TTFD D+ V  ALRAGA+GFL K + ++ L+A++  VA+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  DALLFPAAVRRLAAG--HTGRSTLD------AAGLTEREAEVLRLMARGLSNAEIAARLF  175
            D+ L ++A + + ++  + GRS+ D      +A LT+RE++V+   ARGL N  IA  LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  LSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFVS  211
            +S+ TVKTH+ + ++KL+ RDR Q V  A+ +G+V+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

567) CMM_1573 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (436),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 148/215 (69%), Gaps = 7/215 (3%)

Query  6    IRVALVDDQALFRTGVRMLISSQPDLEFAGEAANGQEAVELARAERPDVILMDIRMPVMD  65
            I V LVDDQA++R+G+R ++  ++++   GEAA+G+ A  + R+ RPDV+LMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIQATAEVLRAADARGERPPRVLVLTTFDLDEsaarairagasgFVLKDADPEFLLAAIR  125
            G+ ATA  LRA       + R+LVLTTFD DE    A+RAGA GF+ K AD+E L+AA+ 
Sbjct  61   GVGATAA-LRADPDLN--AVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  126  TVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFM---SLTSREREIFVLAARGLSNAEI  182
            +V  G++ ++A+A++ ++ ++   +R+      +    +LT RE ++ + AARGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAF  217
            A+  F+S ATVKTH++R ++KL  RDR QLV +AF
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

568) Ndas_1972 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 149/217 (69%), Gaps = 4/217 (1%)

Query  3    VRVVVADDQALVRMGLRVLLEGEADLELVGEAGDGGQAVELVRRLRPDVVLMDVRMPVVD  62
            + VV+ DDQA++R GLR +LE +A++ ++GEA+DG  A  ++R  RPDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEALRRIAGEEALAHTRVVVLTTFELDEYVFEALRAGASGFLIKDSDPQEMlaavraaa  122
            G+ A   + ++  L   R++VLTTF+ DE V+ ALRAGA GFL K +D++ ++AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  rgeallSPSVTRRVVAAFVSREPGGGrvprlevltererevvglvgegl---SNEEIAAR  179
            +G++ LS++ ++ VV+ +  R  ++  V  +   +   +   ++V  +     N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV  216
            L +SPAT +TH++RAM KL ARDR+QLV +AFR+GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

569) SVEN_5106 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (436),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 98/218 (45%), Positives = 144/218 (67%), Gaps = 4/218 (1%)

Query  1    MIKVLLADDETMIRAGVRAILATDPGIEVVAEAGDGHEAVALAREHRPDVVLLDIRMPRL  60
            MI V+L DD++MIRAG+R+IL  D+GI V++EA+DG+ A A+ R  RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGAAEELRA--AVPDTAVVMLTTFSEDAFVARALGSGVSGFLLKSGDPRELIagvrav  118
            DG+GA+  LRA   +    +++LTTF  D  V  AL +G  GFL KS+D+  LIA+V AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  agggaaLSPTVARRVIDTL-GGErftraarartrLEPLTGREREVVALLAAGLSNQEIAD  177
            A G+++LS+  A+ V+  L    R +      +R   LT RE +VV   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RMYVVEGTVKAHVSAVLARLGLRNRVQLAVLAYEAGLV  215
             +++  +TVK+H++  +++L  R+R QL  +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

570) Cwoe_0549 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 144/221 (66%), Gaps = 9/221 (4%)

Query  3    IRVVVADDQPIARQGLRMILESEPDLEVVGEAVDGLDAIGQVERRRPDLVLMDIRMPRMD  62
            I VV+ DDQ++ R GLR ILE ++++ V+GEA DG  A++ +   RPD+VLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRLRA---VTGVEVIVVTTFDLDEYVLDALRAGAVGFLVKDSAPERIVDAVRSVA  119
            G+ AT  LRA   + +V ++V+TTFD DE VL ALRAGA GFL K + +E ++ AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  RGDALISPEVTRRLLEQFVSAAPARAGDATL----AELTPRERDVLLGIAAGRSNAEIAA  175
            +GD+ +S+  ++ ++ ++   + + A D  L    A LT RE DV+LG A G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  LLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETGLVTPS  216
             L +  +TVK H+ R ++KL  + R Q V  A+ +GLV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

571) Caci_0683 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 96/225 (43%), Positives = 146/225 (65%), Gaps = 10/225 (4%)

Query  6    VVIADDQVLVRTGFRMILMSEGIDVVGEAANGEEALRVVRETRPDVVLMDIRMPGMDGLE  65
            VV+ DDQ ++R+G+R IL   GI V+GEAA+G  A+ V+R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  66   ATRLIMAENAAAITSAIDAPRETPRIIILTTFDLDQYVYAAITAGASGFLLKDVSPEHLV  125
            AT  + A+             ++ RI++LTTFD D+ V AA+ AGA GFL K   +E L+
Sbjct  64   ATAALRADPDL----------NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLI  113

Query  126  AAVHMVRAGDAMLAPAITRRLVERFAVPTVNPRTEALHKDLATLTPrerevlgllgrglS  185
            AAV+ V  GD+ L+++ ++ +V  +     ++    L    ATLT RE +V+   +RGL 
Sbjct  114  AAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLD  173

Query  186  NAELAARFHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGLIK  230
            N  +A  + +S ATVKTH+ R ++KL+ RDR+Q V +A+ +GL++
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

572) Isova_2431 in NC_015588


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 148/219 (68%), Gaps = 7/219 (3%)

Query  5    IRVALVDDQQLVRAGFRMVIDSQPDLEVVVEAGDGAQALRLLASHAVDVVLMDVRMPNLD  64
            I V LVDDQ ++RAG+R +++ ++++ V+ EA+DG  A+ ++ +   DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLSATARLTAADD--APRVIVLTTFDLDEYVLEAIRSGASGFLLKDAPPEEMLAAIRTVH  122
            G++ATA L A  D  A R++VLTTFD DE VL A+R+GA GFL K A +E ++AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDAVIAPSSTRRLLEHL--VGVLPAEGSTVGHPGldeltererevlvlMARGRSNAEIA  180
            +GD+ +++++++ ++ +L   G  +++   +++ +     E +  +    ARG  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGA--ARGLDNVSIA  178

Query  181  DELYVAEATVKTHVGRILAKLGVRDRVQAVVAAYEAGLV  219
             +L+++ ATVKTH+ R ++KL  RDR Q V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

573) MLP_00470 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 139/220 (64%), Gaps = 13/220 (5%)

Query  1    MIRVGIVDDDALVRAGLQAILSSAEDIEVVGEADDGAGVPELVQRHRPDVVVMDIRMPQV  60
            MI V +VDD+A++RAGL++IL  A +I V+GEA DG +   +++  RPDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRLVsdsdasrsdgggsgedRPPTRVLVLTTFQLDEHVFAAIEAGASGFLLKDT  120
            DG+ AT  L +D+D              + R+LVLTTF+ DE+V+AA+ AGA GFL K +
Sbjct  60   DGVGATAALRADPDL------------NAVRILVLTTFDGDEEVLAALRAGADGFLAKSA  107

Query  121  PPRELIEAVRVVADGDAMLSPAHTRALIERFADSGRDHRRTTARSLLESLSPREHEIAVA  180
             +  LI AV  VA GD+ LS++ +++++  +   GR        +   +L+ RE ++ ++
Sbjct  108  DSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLG  167

Query  181  VAEGLSNAEIGARLFCSEATVKTHLTRVFAKLQDTNRVRL  220
             A GL N  I+  LF S ATVKTHL R  +KL+  +R +L
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

574) SFUL_3050 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 151/217 (70%), Gaps = 3/217 (1%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMevvaeagdgaeaieiLRATAVDVVLMDVRMPRLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ ++R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAQP--NPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLSAIRSVH  120
            GV AT  + A+P  N+ ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFSPMLPSSEKEPKNKHIEKLTEREREVMLLVAQGLSNGEIAAH  180
             GD+ +++++++ ++  +     S+       +   LT+RE +V+L  A+GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV  217
            L +S ATVKTH+ R +TKL+ RDR Q+V +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

575) CMN_01550 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 148/215 (69%), Gaps = 7/215 (3%)

Query  6    IRVALVDDQALFRTGVRMLISSQPDLEFAGEAANGQEAVELARTEHPDVILMDIRMPVMD  65
            I V LVDDQA++R+G+R ++  ++++   GEAA+G+ A  + R  +PDV+LMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIQATAEVLRAADARGDRTPRVLVLTTFDLDEsaarairagasgFVLKDADPEFLLAAIR  125
            G+ ATA  LRA       + R+LVLTTFD DE    A+RAGA GF+ K AD+E L+AA+ 
Sbjct  61   GVGATAA-LRADPDLN--AVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  126  TVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFA---SLTSREREIFVLAARGLSNAEI  182
            +V  G++ ++A+A++ ++ ++   +R+      +A   +LT RE ++ + AARGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  183  AQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAF  217
            A+  F+S ATVKTH++R ++KL  RDR QLV +AF
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

576) Sros_3244 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (434),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 150/217 (70%), Gaps = 6/217 (2%)

Query  3    IRVLIADDQGMVRTGFTVFLDSQPDIEVVGEAADGREAVARVAELRPDVVLMDVRMPVMD  62
            I V++ DDQ+M+R+G+  +L+ +++I V+GEAADGR A A +   RPDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATRAI-LDGDGSPPKVLILTTFDLDDYVYEALRAGASGFLLKDASAQQlaeavrvva  121
            G++AT A+  D D ++ ++L+LTTFD D+ V  ALRAGA GFL K A ++ L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  ageallaPSVTRRLISEFARVGPRRPR----GRLDDITERETEVLALIAQGRSNQEIAEE  177
             G++ L+++ ++ ++S++ R G         +R   +T+RET+V+   A+G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETGLV  214
            L +S  TVKTH+ R ++KL+ RDR+Q +  A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

577) L083_3878 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 98/223 (44%), Positives = 148/223 (67%), Gaps = 7/223 (3%)

Query  19   VRVLVVDDQELVRAGFALIIDGRDDLAVVGEAGDGAQAVALTAALHPDVVLMDVRMPVLD  78
            + V++VDDQ ++RAG+  I+++  ++ V+GEA+DG  A A+  + +PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  79   GIEAAR--RIAASGSPARIIMLTTFDLDEPVLAALRAGASGFLLKDIRPGELADAIRVVA  136
            G+ A+   R  +  ++ RI++LTTFD DE VLAALRAGA GFL K   +  L  A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  137  RGEALLAPTVTRRL---LDRFaaappargpapelaVLSGRETEVLELVARALSNDEIAER  193
            +G++ L++  ++ +   L R + ++      +  A L+ RET+V+   AR+L N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  194  LHLSRATVKTHLSAILTKLGLRDRVQAVVLAYETGLV-RAGDP  235
            L +S ATVKTHL+  +TKL  RDR Q V +A+ +GLV RA +P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

578) Amir_2232 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (434),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 144/218 (67%), Gaps = 7/218 (3%)

Query  71   IGVVIADDQALLRGSFEVLVGSAPDLRVLGTAEDGEravavaarvrPDVVLMDVRMPNVD  130
            I+VV+ DDQA++R+++  ++  A ++RV+G A DG  A AV    RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  131  GIEATA--RICAAQAGVRVLILTTFDLDEYVYAALRAGASGFLLKDTPPADLLAAIRVVA  188
            G+ ATA  R  +   +VR+L+LTTFD DE V AALRAGA GFL K + +  L+AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  189  SGEALLSPSVTRRLITEF----aarpaarplpalDAVTAREREVLRLVAEGLSNTEITEA  244
             G++ LS++ ++ +++++     +      ++   ++T RE +V+   A GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  245  LHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLVT  282
            L +S +T+KTH+ R + KL ARDR+QLV  A+ SGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

579) HMPREF9154_0386 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 98/225 (44%), Positives = 143/225 (64%), Gaps = 12/225 (5%)

Query  3    IRVLLVDDQEMIRMGFRMVLGTAEGIEVVGEASDGDEVLDVLAEHPADVVLMDVRMPRID  62
            I V+LVDDQ MIR G+R +L  A GI V+GEA+DG   + V+    +DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIKATRRVMALED--PPHVLVLTTFDLDEYAYEALRAGASGFLLKDAPLEEVAAAIRHVH  120
            G+ AT  + A  D  + ++LVLTTFD DE    ALRAGA GFL K A  E + AA+  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  DGDAVVAPSTTRRLLSHFA----APEASSLAAPTNTAPLELLTPREREVLSLVARGLSNR  176
             GD+ +++++++ ++S++     ++    L A T T     LT RE +V+   ARGL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-----LTHRETDVVLGAARGLDNV  175

Query  177  EIADELVLSEGTVKVHVGHVLTKLDLRDRVQAVVLAYETGLIAPG  221
             IA +L +S +TVK H+ + +TKL+ RDR Q V +A+ +GL+  +
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

580) liaR in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 137/208 (66%), Gaps = 11/208 (5%)

Query  3    VRVLIVDDQALFREALATLLEVQPEIDVVGEAANGEEAVRLCAELSPDVALMDLRMPVLD  62
            + V++VDDQA++R +L  +LE ++ I V+GEAA+G  A  +     PDV LMDLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATARLRAEQ--PGVRVLALTTFDDDEDVFAALRAGAVGYLLKDVSSTRLVEALVAAQ  120
            G++ATA LRA+    +VR+L LTTFD+DE+V+AALRAGA G+L K   S  L+ A+ A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  RGESVLQPSvaaklvarvarlpaETPR----PSVTPLSDRELEVVRLLADGRS--NREIA  174
            +G++ L ++ A  +V+ + R    +      +  + L++RE +VV  L+ +R+  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV--LGAARGLDNVSIA  178

Query  175  KTLFLAEGTVKNLVTSVLSKLQVRDRTQ  202
            + LF++ +TVK  +   ++KL+ RDR Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

581) Bfae_05830 in NC_013172


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (434),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 147/208 (71%), Gaps = 7/208 (3%)

Query  25   IRVLVADDHPAVLSGLVALLDSAPDLAVVAQAGDGETALAAAREHRPDVVLTDVRMPGAT  84
            I V++ DD++ + +GL ++L+ A ++ V+++A+DG +A+A  R  RPDVVL D+RMP   
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  85   GIEITPALRE----TGAHVLVISGFDLDEYVlgalaagaDGYLVKTEDPQRILAAVRDVH  140
            G+  T+ALR      + ++LV++ FD DE VL+AL AGADG+L K+ D++ ++AAV  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  141  RGDAVLSAAATRAVVAELRGRASGHPAAGRSAVGPEPPFTRREEDVLALVAQGRTNQQIA  200
            +GD+ LSA+A+++VV++LR R  G++A++   ++  + +T+RE DV+   A+G  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR--GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  201  RELFVEVTTVKSHLSHALVKLQLDSRVQ  228
            R+LF+  +TVK+HL++A+ KL+   R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

582) Franean1_6351 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 85/202 (43%), Positives = 134/202 (67%), Gaps = 7/202 (3%)

Query  45   RVILESGGEIDVVGEASDGSQVVPLIRENTPDVVIMDIRMPRVDGLAAIREILADVA-DP  103
            R ILE +G I V+GEA+DG    ++IR + PDVV+MD+RMP +DG++A   + AD   ++
Sbjct  18   RGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNA  76

Query  104  PKILVLTTFELDDYVYEALRSGANGFLLKRARPAEIVQAVRTIVSSESLLFPEAIRYMAG  163
             +ILVLTTF+ D+ V  ALR+GA+GFL K A +  ++ AV ++  +++ L + A + + +
Sbjct  77   VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVS  136

Query  164  --KRPNREAHET---MRRAVLTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVL  218
              +R  R A +     R A LT+RE+DV+   + GL N  IA  L++++ TVK+H++  +
Sbjct  137  DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAM  196

Query  219  AKLGARDRTQAVIIAYESGFVE  240
            +KL ARDR Q V IA+ SG+V+
Sbjct  197  TKLHARDRGQLVSIAFRSGLVN  218

583) ACPL_7236 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 148/220 (68%), Gaps = 12/220 (5%)

Query  3    IRVLLADDHRLVRSGFRVILEMEDDITVVGEAADGATAVELALRLRPDVVLMDVEMPVMD  62
            I V+L DD+ ++R+G+R ILE + +I V+GEAADG +A  +    RPDVVLMD+ MP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAT---RRIAAQSGPSVLILTTFDSDDYLFAALQAGASGFLLKNGTPEALTEAVRVLA  119
            G+ AT   R  +  ++  +L+LTTFD+D+ ++AAL+AGA GFL K++ +E+L  AV  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDALLAPAVTRRVIAEFSAPRQRSPEPG-----VRLGELTPREHEVLVELaggatnaei  174
             GD+ L+++ ++ V++++   R+R+  +       R + LT RE +V++  A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  175  aaaLHLGETTVKTHVSRVLMKLGARDRTQAVVMAYEMGVV  214
            A  L ++ +TVKTH++R + KL ARDR Q V +A+  G+V
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

584) SBI_03056 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 146/220 (67%), Gaps = 6/220 (2%)

Query  39   IRLLVVDDDPLVRAGLRLMLGGASSGIEIVGEASDGAEVAALVDRHSPDVVLMDIRMPTV  98
            I +++VDD++++RAGLR +L    +GI ++GEA+DG    A++    PDVVLMD+RMP +
Sbjct  2    IDVVLVDDQAMIRAGLRGIL--EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  99   DGLTATEQLRQREP---APEVVVLTTFNADEHVLRALRAGAAGFVLKDTPPADLvaavrr  155
            DG+ AT  LR  +P   A  ++VLTTF++DE+VL ALRAGA GF+ K + +  L+AAV  
Sbjct  60   DGVGATAALRA-DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  156  vaaGEPVLSPTVTQQLIEHVAGSGRDARQERARALLDQLNDREREVAVAVGEGKSNAEIS  215
            VA G+  LS+  ++ ++ ++   GR A +    A    L +RE +V ++ + G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  216  AGLFMSVATVKTHVSRILTKLDLNNRVQIALLAHDAGLLE  255
             +LF+S ATVKTH++R +TKL+  +R Q+  +A  +GL++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

585) AMIS_26200 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 102/224 (46%), Positives = 157/224 (71%), Gaps = 13/224 (5%)

Query  3    IRVVLVDDQALVRAGFGMVLSAQADMevvgeagdgaealallaRTSADVVVMDIRMPVMD  62
            I VVLVDDQA++RAG+  +L  +A++ V+GEA+DG  A+A++  + +DVV+MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAGPD--GPRVLVLTTFDTDEDAFAALQAGASGFLLKNAPPEQLLDAIRVVA  120
            GV AT  + A+PD  + R+LVLTTFD DE+ +AAL+AGA GFL K+A +E L+ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGESVVAPRVTRTLLDRFSGQLTLPGRAD------ERLASLTDREREVLELVAAGLSNGE  174
             G++ +++  ++T++    ++L   GR+        R A+LT+RE +V+   A GL N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IAARLFVAEGTVKTHFGRILTKLELRDRVQAVVLAYEIGLVKPG  218
            IA  LF++ +TVKTH+ R +TKL+ RDR Q V +A+  GLV+ +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

586) ACPL_6868 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 90/201 (45%), Positives = 135/201 (68%), Gaps = 16/201 (7%)

Query  1    MIRILLVDDHPVVRMGLRGMLDAEPDLTVIGEASDGAEGAEIALRDRPDIVLMDLRMPGA  60
            MI ++LVDD++++R GLRG+L+ ++++ VIGEA+DG  +  +    RPD+VLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATGRILAGDP---GIRVMVLTTYESDRDILRAIEAGASGYLLKDaspadladavra  117
            DGV AT+  L +DP   ++R++VLTT+++D ++L A+ AGA G+L K A +  L  AV A
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aarGETVLAPSVASTLVRQVRTPA-----------PPALSARETEVLKLVAAGLTNADIG  166
             A+G+T L+++ A T+V ++R  +            ++L+ RET+V+   A GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  167  RRLFISEATVKTHLLRVFNKL  187
            R LFIS ATVKTHL R   KL
Sbjct  179  RDLFISPATVKTHLNRAMTKL  199

587) AMIS_16670 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 97/224 (44%), Positives = 150/224 (67%), Gaps = 12/224 (5%)

Query  1    MIKVLIADDQAMVRQGFGALLAAQPDLLvvgdaangadavtaaRELRPDVVLMDVRMPVM  60
            MI V++ DDQAM+R G+ ++L  ++++ V+G+AA+G  A +  R  RPDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRLAGGP-----KVLILTTFDLDDYVYEALRAGASGFLLKDAPADDLVTAVRVV  115
            DG+ AT  L ++P     ++L+LTTFD D+ V  ALRAGA GFL K A ++ L++AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  ASGEALLAPSVTRRLIAEFaarparnrprpVEL----NALTPRETDVLRLIARGRSNQEI  171
            A G++ L+++ ++ +++++  R     +  VEL     +LT RETDV+   ARG  N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  172  AADLVVAEQTVKTHIGKILGKLGLRDRAQAVVLAYETGLVAAGE  215
            A DL ++  TVKTH+ + + KL  RDR+Q V +A+ +GLV  +E
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

588) tcsR4 in NC_012590


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 145/209 (70%), Gaps = 4/209 (1%)

Query  1    MISVVLVDDEQALRRGIRFILEGAADIEVVAEASNGREGVARVLDLQPDVVLMDIRMPVM  60
            MI VVLVDD+  +R G+R ILE+A+ I V++EA++GR + A + + +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEAAGKLRASA--PDIPVVMLTAFDTDEFIVDALHAGAMGFLLKTIEPEGLVLAVRAA  118
            DG+ A++ LRA +    + +++LT+FD DE ++ AL+AGA GFL K+ ++E+L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ATGQQLLSPKALKNllalkrpepapaepealearpleGLSQRENEVAQLVAQGLDNQEIA  178
            A G+  LS+ A K +++  R    +A    L AR    L++RE +V    A+GLDN  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-LTHRETDVVLGAARGLDNVSIA  178

Query  179  GQLYVSVTTVKTHIKHILDKLGGTNRVHI  207
             +L++S +TVKTH+++ + KL + +R ++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQL  207

589) FraEuI1c_2245 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (432),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 154/221 (70%), Gaps = 4/221 (1%)

Query  1    MIRVLLADDQALVRTGFRLIVDNAPDMlvvgeagdgaeaatlaaelQPDVVLMDVRMPDV  60
            MI V+L DDQA++R+G+R I+++A ++ V+GEA+DG  A ++    +PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEGTRRIAADGA-NHTRILILTTFDLDEYVHASLQAGASGFLLKDTLATDLLSAIRVV  119
            DGV +T  + AD   N  RIL+LTTFD DE V A+L+AGA GFL K + +  L++A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  TRGDAVVAPSVTRRLIE--RYLGSGPARITPPADLQTLTEREREVLVLIARGLSNTEIAA  177
            ++GD+ ++++ ++ ++   R  G +++ +   A   TLT+RE +V++  ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGLVRPA  218
             ++++ +TVKTH++R ++KL+ RDR Q V  A+ SGLV  A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

590) SHJG_5550 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 149/222 (68%), Gaps = 3/222 (1%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAEPD--APKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGDLLAAIRAVH  120
            GV AT  + A+PD  A ++L+LTTFD DE  +++L+AGA GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSVGKEPQHKelerltererevmvlvAQGLSNGEIAAR  180
             GD+ +++++++ ++  +     S            LT+RE +V++  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLVRAGGH  222
            L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV  + H
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

591) SHJGH_5313 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 149/222 (68%), Gaps = 3/222 (1%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAEPD--APKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGDLLAAIRAVH  120
            GV AT  + A+PD  A ++L+LTTFD DE  +++L+AGA GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSVGKEPQHKelerltererevmvlvAQGLSNGEIAAR  180
             GD+ +++++++ ++  +     S            LT+RE +V++  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLVRAGGH  222
            L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV  + H
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

592) Sare_1782 in NC_009953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 152/220 (70%), Gaps = 8/220 (3%)

Query  11   IRVLLADDQHLVRTGFRVILEVEDDIHVVGEAADGERAVSMARALRPDVVLMDVEMPRVD  70
            I V+L DDQ ++R+G+R ILE + +I+V+GEAADG  A ++ R+ RPDVVLMD+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  71   GLEATRRIVADVDRPNGPAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVV  130
            G+ AT  + AD D  N+  +L+LTTFD D+ ++AALRAGA GFL K++ +E+L+AA+  V
Sbjct  61   GVGATAALRADPD-LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  ARGDGLIAPELTRRVIAAFAGPGGEPTTTAVAL----PELTPREHEVLVLVasgannaei  186
            A+GD  +++  ++ V++ +   G   ++T V L    + LT RE +V++  A G +N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  187  aaaLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV  226
            A  L ++ ATVKTH++R ++KL  RDR Q V +A+  G+V
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

593) CMN_00361 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 100/230 (44%), Positives = 151/230 (66%), Gaps = 18/230 (7%)

Query  20   IRVLLVDDQALVRAGIRVILESEDGIEVVGEAADGEQGVRLAAALAPDVICMDVQMPRVD  79
            I V+LVDDQA++RAG+R ILE + GI V+GEAADG  +  +  +  PDV+ MD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  80   GLEATRRIVADPSIRAG-VLMLTTFDREDYLFTALDAGASGFVLKSASPESLVEAVHVLA  138
            G+ AT  + ADP + A  +L+LTTFD ++ +++AL AGA GF+ KSA +ESL+ AV+ +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  139  RGDALLSPDVTRRVIE---RFGRGSGapdddaatpipaptiptdpRVQTLTDRELEVLRL  195
            +GD+ LS++ ++ V+    R GR++               +   +R  TLT+RE +V+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSA-------------TDVELIARTATLTHRETDVVLG  167

Query  196  LAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGIV  245
             A GL N  IA  L+++ ATVKTH++R + KL  RDR Q V +A+  G+V
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

594) KSE_63120 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 96/223 (44%), Positives = 151/223 (68%), Gaps = 3/223 (1%)

Query  3    VTVLLADDEDLMRAGLRMMLDTQPDLRVVGEAADGAQAVRLATELRPDVVLMDVRMPVLD  62
            + V+L DD+ ++RAGLR +L+ ++++RV+GEAADG  A  +    RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATAELSVRC--PGSRVLVLSTFESDayvfaavragaagfLLKRTPPEQLLDGIRTVA  120
            GV+ATA L       + R+LVL+TF++D  V+AA+RAGA GFL K + +E L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGEALLSPSVTRRVLAEFaraappppspavravLDRLTPREHQVLRLLGRGRSNPEIAAA  180
             G++ LS++ ++ V++++ R + ++    + A    LT RE +V+   +RG  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHGLVRPAPHA  223
            L+++ ATVKTH+ R + KL  R+R + V +AF  GLV  A H+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

595) SHJG_2698 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 154/219 (71%), Gaps = 7/219 (3%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavIPLVRQLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG + ++++R  RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLHTVAE--PPKILVVTTFEDDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT A L++ ++  + +ILV+TTF++DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPASVRRLAV---RYGDGarpapttpaharLTEREAEVLRLMARGLSNAEIAA  177
            A G++ L +++ + +     R G +A      +  A LT+RE++V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFME  216
             L +++ TVK+H++  ++KL ARDR Q V  A+ SG+++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

596) SHJGH_2462 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 154/219 (71%), Gaps = 7/219 (3%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavIPLVRQLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG + ++++R  RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLHTVAE--PPKILVVTTFEDDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT A L++ ++  + +ILV+TTF++DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPASVRRLAV---RYGDGarpapttpaharLTEREAEVLRLMARGLSNAEIAA  177
            A G++ L +++ + +     R G +A      +  A LT+RE++V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLVVGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFME  216
             L +++ TVK+H++  ++KL ARDR Q V  A+ SG+++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

597) BN6_36870 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 92/216 (43%), Positives = 143/216 (67%), Gaps = 9/216 (4%)

Query  8    VLLADDEPLFRGTVRVLLDAQPDLAVVGEAGTGREACALAARTAVDVVLMDVRMPEVDGV  67
            V+L DD++++R+ +R +L+ ++++ V+GEA+ GR A A+   +  DVVLMD+RMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   aatrr--itaapaaprVLVLTTFDEDEAVHEALRAGASGFLLKDAPPTRLLDAVRAVAAG  125
            +AT      +   A R+LVLTTFD DE V  ALRAGA GFL K A +  L+ AV AVA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  126  EALLAPSVTRRLIADFLARAPRP------DRLAGVTPRERDVLALITRGLSNREIEQRLH  179
            ++ L+++ ++ +++D+  R+  +       R A +T RE DV+   +RGL N  I + L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  VGRHTVKTHIGHLMAKLAARDRAQLVIAGYEAGLAD  215
            ++  TVKTH+ + M+KL ARDR+QLV  ++ +GL +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

598) GPOL_c48160 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 146/218 (67%), Gaps = 6/218 (2%)

Query  1    MIRIALIDDQPLFRGGIAMIIGSQPDMEVVTEESTAIGLATVVRTTRPDIVLMDVRMPGV  60
            MI + L+DDQ+++R+G+  I+  ++++ V+ E + + +  +V+R +RPD+VLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATADLIADLGDDAPKVLVLTTFDTDEaaasaiasgasgFVLKDAQPDFLLAAIRAV  120
            DG+ ATA L AD + +A ++LVLTTFD DE   +A+ +GA GF+ K A+++ L+AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VDGSQVVAASATRRLFETHRTRAGEPG-----PEYAQLTPREREILVRAAHGLSNAEIAA  175
              G   ++A+A++ +    R R+  +      +  A LT RE ++++ AA+GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  AEVLSEATVKTHISRILTKLALRDRVQLVVYAYDHGLV  213
               +S ATVKTH++R +TKL  RDR QLV  A+  GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

599) Krad_1981 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (431),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 95/227 (42%), Positives = 144/227 (64%), Gaps = 7/227 (3%)

Query  1    MTTVLLVDDQALLRMGFRLVIESEPDLEVVGEASDGAVALEQVRALAPEVVLMDIRMPGV  60
            M  V+LVDDQA++R G+R ++E ++++ V+GEA+DG  A+  +R+  P+VVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RIAAEHPSSRVLVLTTFDVDEYAFAALRSGASGFLVKSARPTELVDAIRIV  118
            DG+ AT   R  ++  + R+LVLTTFD DE  +AALR+GA GFL KSA +  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGLDHRLRSLTPRELDVLRCLAEGSSNA  178
            A G + +++   + ++    +++   +  A D  L  R  +LT RE DV+   A G  N 
Sbjct  120  AKGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGLVGPGER  225
             IA  L +S +TVKTH+   ++KL  RDR Q V  A+  GLV  +E+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

600) BN6_75050 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 143/220 (65%), Gaps = 11/220 (5%)

Query  1    MIKVLVVDDQEMVREGFSALLdaqadiavvgaagdgvaavaEVRRLRPDVVLMDVRMPEL  60
            MI V++VDDQ M+R G+ ++L+  +   +  AA++  A    +R  RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAV-IRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRLLADDP----VKVLVLTTFDLDDYVYEALRAGASGFLLKHAPARELLEAVRVV  116
            DG++AT  L  DP    V++LVLTTFD D+ V  ALRAGA GFL K A +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  ARGDALLAPSVTRRLIEDFVK----AQPVAVVRPARLSALTLRETEVLRLIATGLSNSEI  172
            A+GD+ L+++ ++ ++ D+ +    A  V ++  AR ++LT RET+V+   A GL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELI--ARTATLTHRETDVVLGAARGLDNVSI  177

Query  173  AALLVLAEQTVKTHVSRVLMKLGLRDRAQAVIAAYESGLV  212
            A  L ++  TVKTH++R + KL  RDR+Q V  A+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

601) B446_06600 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 99/223 (45%), Positives = 151/223 (68%), Gaps = 16/223 (7%)

Query  3    VTVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavIPLVRSLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG + ++++R+ RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRAVLRTVD--APPRILVVTTFEEDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT A LR+     + RILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPASVRRLAARYGDNHPPRGRLSE--------AGLTEREADVLRLMARGLSNA  172
            A G++ L +++ + + +    +   RGR +         A LT+RE+DV+   ARGL N 
Sbjct  120  AKGDTSLSAGAAKTVVS----DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  173  EMAARLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVT  215
             +A  L ++  TVK+H++  ++KL ARDR Q V  A+ SG+V 
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

602) Krad_1350 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (430),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 99/230 (44%), Positives = 157/230 (69%), Gaps = 10/230 (4%)

Query  14   IRVVLVDDQQLVRAGFRMVLDSQPDLQVVAEASDGADAVRVVAATPCDVVLMDVRMPGLD  73
            I VVLVDDQ ++RAG+R +L+ +++++V++EA+DG  A  V+ ++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  74   GIEATRRItgsgtagagpdagapKVVVLTTFDLDEYVVAAIGAGASGFLLKDAPPEELLA  133
            G+ AT      ++  A+PD  A +++VLTTFD DE V+AA+ AGA GFL K A +E L+A
Sbjct  61   GVGAT------AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIA  114

Query  134  AVRTVHSGDAVIAASSTRRLLQHVGPMLRagaaspaaaaqgvpaDLTPRELEVLECMAHG  193
            AV +V  GD+ ++A++++ +   V+ + R G ++      +  A LT RE +V+   A+G
Sbjct  115  AVEAVAKGDTSLSAGAAKTV---VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARG  171

Query  194  LSNGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYAAGLVQPGD  243
            L N  IA  + +S ATVKTH+ R ++K ++RDR Q V +A+ +GLV+ ++
Sbjct  172  LDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

603) ML5_4977 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 152/220 (70%), Gaps = 3/220 (1%)

Query  3    VRVMIVDDQALVRAGFRMVLGSQPDLEVVGEAIDGADALRVLDRVEADVVVMDLRMPTMD  62
            + V++VDDQA++RAG+R +L  ++++ V+GEA DG  A+ V+    +DVV+MDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAGSAGGGPRVLVLttfdteadafaaLRAGASGFLLKNVPPEELMAAIRVVA  122
            GV AT  + A++   + R+LVLTTFD + + +AALRAGA GFL K+  +E L+AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  QGDSVVAPSITRRLLD--RFAGQLGPAPTADPRLAQLTDREREVLLLVAQGLSNAEIAAR  180
            +GD+ ++++ ++ ++   R  G+ +      +R A LT+RE +V+L  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  VHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLVTPG  220
            + ++ ATVKTH+ R ++KL+ RDR Q V +A+ SGLV  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

604) Namu_0480 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 139/217 (65%), Gaps = 10/217 (4%)

Query  3    VRVVVVDDNELLRAGLVTVLTSDPDIEVVGQAADGPAGVRACREHRPDLVLMDVEMP--G  60
            + VV+VDD+ ++RAGL  +L  D++I V+G+AADG ++    R  RPD+VLMD+ MP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GDGIVATRRIVTDLPDVRVLILTMFDLDDYVVEALRAGAAGFLLKTTPPRDLIRSVRQCA  120
            G G  A+ R   DL  VR+L+LT FD D+ V+ ALRAGA GFL K++ +  LI +V   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGETTVGPTVMARLVDSYVGHQEPPPPGL------AELTGRELDVLRCLADGRSNAEIAG  174
             G+T++++   A+ V S + ++  ++ ++      A LT RE DV+   A G  N  IA 
Sbjct  121  KGDTSLSAGA-AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCGL  211
            +LF++ +TVKTH+ R ++KL  RDR Q V IA R GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

605) BN159_6638 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 91/208 (44%), Positives = 137/208 (66%), Gaps = 5/208 (2%)

Query  1    MIRVLVADDEPLIRAGIRMILTSADDIDVVAEAANGREAVETARSNAVDVALLDIRMPVM  60
            MI V++ DD+++IRAG+R IL  A+ I V++EAA+GR A    R++  DV L+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTALAELGRAAP---GVRVLILTTFGERDNVLRALGHGGAGFLLKDSAPQELIHAVRA  117
            DG+ A A L RA P   +VR+L+LTTF+  ++VL AL  G+ GFL K + ++ LI AV A
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  AAAGNAYLSPAATRHVVDTLASPAATLRGEEARRRLADLTERERDVLALLGEGLSNADAG  177
             A G++ LS++A++ VV  L   + +  + E   R A LT+RE DV+   + GL N   +
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ARLHMSEATVKTYVSRILTKLECENRVQ  205
              L +S ATVKT ++R +TKL+  +R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

606) SAV_4454 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 143/218 (66%), Gaps = 6/218 (2%)

Query  3    ISVVIADDQELVRSGFAMILDAQPDIevvgeagdgaaavaavRRTSPDVALLDIRMPGTD  62
            I VV+ DDQ ++R+G+  IL+ +++I V+GEA+DG +A A +R + PDV L+D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEACRQMCSSS---GVRAIMLTTFDADEYVYEALHAGASGFLLKDVRRDDLVHAVRVVA  119
            G+ A   + + +   +VR ++LTTFD+DE V  AL+AGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGESLVAPSVARRLIADYTRRGRRTAPVS--GRLDVLTARERETLLHLAHGLSNAEIAAA  177
             G++ ++++ A+ +++D  RRGR ++ V   +R   LT RE + +L  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  MVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGLVS  215
            + +S  TVKTH+   ++KL  RDR Q V  A+ +GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

607) Ndas_0782 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 145/219 (67%), Gaps = 4/219 (1%)

Query  1    MIRVLLADDEAMIRAGVRAILRSDPEIDVVAEAADGREAVDLVLSHRPDVALLDIRMPRM  60
            MI V+L DD+AMIRAG+R+IL  D+ I V++EAADGR A  ++ + RPDV L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATAEIRRVA--PGTAVVILTTFGEDSYISQALGGGASGFLLKAGDPRELIAGVHAV  118
            DG++ATA +R  +   +  +++LTTF+ D  +  AL +GA GFL K++D+  LIA+V+AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGAYLSPQVARQVIARFGGPraareaaa-varveeLTQREREVLALVGAGLSNADIAD  177
            A G++ LS+  A+ V++ +     +      +AR   LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLFLVEGTVKSYVSAILNRLEMRNRVQAAILAHEAGLVD  216
             LF+  +TVK+ ++  + +L+ R+R Q   +A  +GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

608) Sros_0277 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 143/219 (66%), Gaps = 17/219 (7%)

Query  6    IRLLIADDHPIVRDGIRGMFAGDPGFEVLAEAGDGAQAVELARALNPDVILMDLRMPKMD  65
            I +++ DD++++R G+RG++  D+G+ V++EA+DG  A  + R+  PDV+LMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVMAIKEL---ARLGVAARVLVLTTYDTDKDVLPAVEAGATGYLLKDTQRDDLIRAVRTA  122
            GV A   L   + L  A R+LVLTT+D D +VL+A+ AGA G+L K ++ + LI AV + 
Sbjct  61   GVGATAALRADPDLN-AVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ARGEAVLSPSVATRLLGQVR------------APADPLSARELEVLELIAQGTTNREVAA  170
            A+G++ LS++ A  +++++R            A +  L+ RE +V+   A+G  N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  RLFISEATVKSHLLHIYTKLGVNDRaaavavaFRRGLLD  209
             LFIS ATVK+HL +  TKL   DR+  V++AFR GL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

609) Cylst_1808 in NC_019757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (428),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 134/207 (65%), Gaps = 4/207 (1%)

Query  1    MIKVLLVDDQSLIRQGlkalleleadleIVGEAENGEMAVELVAELQPDVVLMDIRMPIM  60
            MI V+LVDDQ++IR GL+++LE  +   ++GEA +G  A  ++   +PDVVLMD+RMPI+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIR-VIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATREMHKR--FVGIKILVLTTFDNDEYVTAALQNGAMGYLLKDTPSEELAVAIRAV  118
            DGV+AT  ++    + +++ILVLTTFD DE V AAL+ GA G+L K + SE L  A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HKGYTQLGPGIVKKLLTQFSTMVSTQSPPA-PPSLVELTPREKEVLRLIATGASNREIAQ  177
             KG T L++G  K +++++     + +     +    LT RE +V+   A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELYISEGTVKNHVTNILNRLNLRDRTQ  204
            +L+IS +TVK H+   + +L+ RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

610) Franean1_1652 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 100/221 (46%), Positives = 146/221 (67%), Gaps = 7/221 (3%)

Query  1    MVVADDQALVRAGFRMILTADGIEvaadaadgaqavdavRRTRPDVVLMDIRMPVMDGLE  60
            +V+ DDQA++RAG+R IL   GI V ++AADG  A   +R +RPDVVLMD+RMP++DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  61   ATRRILSGTT-EAPRVIILTTFDVDQYVYAALTAGASGFLLKDVSPEQLVAAVRLVRAGD  119
            AT  + ++   +A R+++LTTFD D+ V AAL AGA GFL K   +E L+AAV  V  GD
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  120  ALLAPTITRRLVERFASPERVAAATHRDL----ATLTPRELEVLRFLARGLSNAELAARF  175
            + L++  ++ +V  +    R  +AT+ +L    ATLT RE +V+   ARGL N  +A  +
Sbjct  124  TSLSAGAAKTVVSDLRRRGR--SATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  QLSEATVKTHVARILGKLRLRDRVQAVVVAYETGLVTPGGR  216
             +S ATVKTH+ R + KL+ RDR Q V +A+ +GLV  + +
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

611) GPOL_c12550 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (428),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 143/220 (65%), Gaps = 4/220 (1%)

Query  3    IRVAIVDDQELVRLGLRMVLQAADGIEVVGEAADGDEAVALVEPCAPDVILMDVRMPRMN  62
            I V +VDDQ ++R GLR +L+ A GI V+GEAADG  A A++    PDV+LMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRQVVGHR--PSVRVLVLTTFDVDEYAFDAIRAGAAGFLLKDVRGAELvdavvava  120
            GV AT  + ++    +VR+LVLTTFD DE  + A+RAGA GFL K   +  L+ AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  rgdavMSPRITRALVDAYaatppartapa-pvpvDDLTERERQvvvavaRGLSNREIASE  179
            +GD+ +S+  ++++V        + T          LT+RE +VV++ ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LFVSETTVKSHVANILAKLNLRNRIHVVIYAYERDLVRRD  219
            LF+S +TVK+H+   ++KL+ R+R ++V  A+  +LV R 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

612) AARI_04150 in NC_014550


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 88/214 (42%), Positives = 139/214 (65%), Gaps = 4/214 (1%)

Query  1    MITVLIADDQPSVRRALRTFLETQPDIKVISEASSGPEAVTQARIRRPDVVLMDVRMPAG  60
            MI V++ DDQ+ +R +LR +LE +++I+VI+EA+ G  A +  R  RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATATLAGPDATDPIPVVVITTFDLDEYVFGALENGAIGFLLKDAPPTHIIDAVRAA  120
            DG+ ATA+L +    +++ ++V+TTFD DE V++AL  GA GFL K A +  +I AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ATGEGLVAPAVTRRVISEF---arrrapaaresadaDLTPREREVLAALAEGSSNAEIAE  177
            A G+  ++++ ++ V+S++   +R  +     +  A LT RE +V+ + A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QLFIEIGTVKTHVSSIILKLGVRDRVQAIVWAYQ  211
            +LFI  +TVKTH++  + KL  RDR Q +  A++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFR  213

613) DGo_CA0305 in NC_017790


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (428),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 144/220 (66%), Gaps = 10/220 (4%)

Query  1    MIRVLLADDHALFRQGLRSLLESEGMRVIGEAANGREAIRYAADTHPDVILMDIQMPELD  60
            MI V+L DD+A++R GLR++LE  G+RVIGEAA+GR A+    +++PDV+LMD++MP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVKATQSILEINPQ---ARVIMITMYRQDRYVFEAVKAGARGYILKDADATTLIDAITRV  117
            GV AT + L  +P+    R++++T +  D  V+ A++AGA G++ K AD+ +LI A+  V
Sbjct  61   GVGATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AGGEALLDADMAQNVLDDFRDKREELPSE-----KHADLNERETMILKLLAQGFSNQDIA  172
            A G++ L A+ A+ V+ D+R +R   +++     + A L +RET ++   A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIAN  212
              L IS  TV+ +L+   TKL+  +R Q    A+R G+ N
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

614) Psed_5706 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (427),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 105/219 (48%), Positives = 143/219 (66%), Gaps = 9/219 (4%)

Query  1    MTSVLVADDQEMVRTGFRLILGAEPGIEVVGEAGTGAEAVERARRLRPDVVLMDIRMPEL  60
            M  V++ DDQ M+R+G+R IL  ++GI V+GEA+ G  A    R  RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRALTADPD--PPRIVVVTTFDLDEYVYGALRAGACGFLLKDAGPRllveavraa  118
            DG+ AT AL ADPD  + RI+V+TTFD DE V +ALRAGA GFL K A++  L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aagdalvSPSVTVRLLRHLTTPAPRPTLPE------PLSPREIDVVRAVARGRTNAEIAA  172
            A GD+ +S++ +  ++ +L   +  +T  E       L+ RE DVV + ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  DLFVSLSTVKTHLTNVQAKLGARNRVEVAAWAWEHGLVS  211
            DLF+S +TVKTHL    +KL AR+R ++ + A   GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

615) Cseg_2097 in NC_014100


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (426),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 137/219 (63%), Gaps = 17/219 (7%)

Query  4    VMSVLIVDDHPLLREGVAAVLEAEPDIQVVGEAADGQDAIAQFKRLRPDVVLMDLQMPGV  63
            ++ V++VDD++++R G+ ++LE +++I+V+GEAADG+ A+A ++  RPDVVLMDL+MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGVEAIREIRAQA--PDARIIVLTTYAGDVRALSALRAGASGYLLKSSLRRELIDTIRAV  121
            DGV A   +RA++     RI+VLTT+ GD   L+ALRAGA G+L KS+    LI ++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  LGGQRYLHPEVAH--------------DIAVNAIAEPLSEREIDVLKRVANGAANKEIAR  167
              G+  L +  A               D+ + A +  L++RE DV+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHRRGIIA  206
             L +S  TVK H+    +KL+  DR Q V++A R G++ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

616) RHA1_ro05272 in NC_008268


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (427),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 141/221 (64%), Gaps = 5/221 (2%)

Query  6    IRVLLVDDQELVRSGLRRILRRKDGFVIVGECADGAEVPGAVVEHTPDVVLMDLRMKKVD  65
            I V+LVDDQ ++R+GLR IL    G+ ++GE ADG    + +    PDVVLMDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIRATRDLRSGAQ--PPPVLVLTTFDDDELLSGSLRAGAAGFILEDSPAEDLIRAVRTVA  123
            G+ AT  LR++++  +  +LVLTTFD+DE + ++LRAGA GF+   + +E LI AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  EGGACLDPAVTGRVLATYRTVAPSSDGGR--NHLTELTARELDVLALIGRGHSNSEIGRE  181
             G++ L ++ +  V++  R  + S+ +     + + LT RE DV+   +RG  N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIVSPGD  222
            L IS  TVK+H+ +   KL+ RDR+  +  AF  G+V+ ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

617) AMIS_49310 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 146/218 (67%), Gaps = 8/218 (3%)

Query  4    VRVLIVDDDPLVRAGLSMILSGGGDVRVVGQaadgaevpaavaeHQPDVVLMDIRMPGVD  63
            + V++VDD++++RAGL  IL ++G +RV+G+AADG    A +   +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GLTATERLRRRPE--APQVLVLTTFDADEFVLRALRVGASGFLLKDTPPGQIKEAVLRVA  121
            G+ AT  LR  P+  A ++LVLTTFD+DE VL ALR GA GFL K + +  +  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  QGEATLSPSVTRQLIAHVaadprpardqadELLNR---LSVREKEVAVLVAQGKSNAEIS  178
            +G+++LS++ ++ +++++    R       EL+ R   L+ RE +V +  A+G  N  I+
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  TDLYMSVATVKAHVSRVLTKLDLNNRVQIALLVHDAGL  216
             DL++S ATVK+H++R +TKL+  +R Q+  +   +GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

618) Ethha_1134 in NC_014828


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 85/200 (43%), Positives = 130/200 (65%), Gaps = 8/200 (4%)

Query  1    MIQVLIADDQTLMRDGLKTILELEPDIAVTGLAADGEEACAICDTRKPDVVLMDIRMPVM  60
            MI+V++ DDQ+++R GL+ ILE +++I V G AADG  A A+    +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATAAIKKRH--PSIAVLVLTTFDDDESIVQALKNGAIGYLLKDIEADRLIQTVRDA  118
            DGV+ATAA++      ++ +LVLTTFD+DE ++ AL+ GA G+L K  +++ LI +V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AQGQFTWPAMLAAKLTKHL-----CANVPALSGRLAALTGRERDVANLLAGGYTNRRIAQ  173
            A+G+ + +A  A  +  +L      A    L +R A+LT RE DV    A G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  MLYLSEGTVKNHVSSIYSKL  193
             L++S +TVK H++   +KL
Sbjct  180  DLFISPATVKTHLNRAMTKL  199

619) CMN_02028 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 91/221 (42%), Positives = 140/221 (64%), Gaps = 4/221 (1%)

Query  1    MIRIVLVDDQELFRGGVRVALDAQPDLEVVGEAGDGREGLAVIDEARPDVVLLDMRMPVM  60
            MI +VLVDDQ ++R+G+R  L+ ++++ V+GEA+DGR ++AVI  +RPDVVL+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLETVRALFDGTRDAPPRVIVLTTFALDRASATAIRGGASGFLLKDATPAFLAAAIRAV  120
            DG+ +  AL  +    + R++VLTTF  D    +A+R+GA GFL K A +  L AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HAGSAVLAPDELTQLFTS---DataapapvappaFRSLSAREKDVFGHVARGLSNAEVAA  177
              G + L+++    + +     + +A      +   +L+ RE DV    ARGL N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  LEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLVERA  218
              F+S +TVKTH++  ++KL  RDR QLV  A    LV+RA
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

620) Cwoe_0676 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 144/213 (68%), Gaps = 7/213 (3%)

Query  3    IRVVVADDQDLVRTGLVMILGAQPDLEVVGEAADGPGALDLATRLRPDVLLVDIQMPGLD  62
            I VV+ DDQ ++R+GL  IL  ++++ V+GEAADG +A+ +    RPDV+L+D++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEVTRRL-AGPDVADPMAVVVITTFDLDEYVLGALRAGARGFLLKDAGPELLVQAIHAA  121
            GV  T  L A+PD+ +++ ++V+TTFD DE VL+ALRAGA GFL K A++E L+ A++A 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ANGDALIAPNVTRRLLATFADQAPVVP----VQPIDPLTKREEEVLALVARGRTNAEIAT  177
            A+GD+ +++  ++ +++ +  ++        +     LT RE +V+   ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELFVGLSTVKTHVASLMTKLGARNRVEIAIWAY  210
            +LF++ +TVKTH+   MTKL AR+R ++   A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

621) Cwoe_5656 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 96/208 (47%), Positives = 148/208 (72%), Gaps = 4/208 (1%)

Query  8    IRVLLVDDDALVRSGLRMMLAGSERIEVVGEADDGRAVLAAVDRHRPDVVLMDIRMPQLD  67
            I V+LVDD+A++R+GLR +L ++  I V+GEA DGR+ +A +   RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIAATALLRAQP--SPPEVLVLTTFDADELVlralragaagfllKDTPPPEIVRAVELVA  125
            G++ATA LRA+P  ++  +LVLTTFD+DE VL ALRAGA GFL K + +  ++ AVE VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGEAMLSPVVTRKLIALVAGDSDAVAHQQQARERLATLSAREHEVALAVGRGCANADIAA  185
             G++ LS+  ++ +++ +   + + ++ +    R ATL+ RE +V L+ +RG  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI-ARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  ELHMSVATVKAHVSRLLAKLEVDNRVQI  213
            +L +S ATVK+H++R ++KL+  +R Q+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

622) Snas_5265 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 102/218 (47%), Positives = 157/218 (73%), Gaps = 6/218 (2%)

Query  1    MIRVALAEDQELVRTGFKLLLDSEDDIvvvgeaanggaavalaREEKPDVLLMDIQMPLV  60
            MI V L +DQ ++R+G++ +L+ + +I V+GEAA+G +A A+ R  +PDV+LMD++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATKLIVGDPDLDGVRVVMLTTfaadaklfaalragaSGYLVKDAEPHELLHGVRVV  120
            DG+ AT  + +DPDL++VR+++LTTF +D  ++AALRAGA G+L K A+++ L+ +V  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDGLLSASVTRRVIESF-----adttatdapdIDGLTDRETEVLGLVARGLSNAEIAG  175
            A+GD  LSA+ ++ V+  +     + T     +    LT+RET+V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYETGLV  213
             L +SPAT KTH+NR+MTKL ARDR+QLV +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

623) SCATT_p07270 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 93/202 (47%), Positives = 136/202 (68%), Gaps = 13/202 (6%)

Query  12   EPMVCVFLRTILGSAEDIEVVGEAHDGAAGVEAVLRSRPDVVLMDLRMPGMDGLAAIE--  69
            ++M+   LR IL  A +I V+GEA DG ++   +  SRPDVVLMDLRMP +DG++A    
Sbjct  10   QAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAAL  68

Query  70   RITALADPPRIVVLTTFDADQYVLRALRAGATGFLVKSTPPEELIGLVRTAAQGHTVLSP  129
            R  +  ++ RI+VLTTFD+D+ VL ALRAGA GFL KS+ +E LI+ V + A+G+T LS+
Sbjct  69   RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSA  128

Query  130  SAARRLVAASTDGLTARDRAR---ELV---GTLTEREVQVLAGLGAGLSNAQIAARLFLS  183
            +AA+ +V+    +L  R+R+    EL+   +TLT+RE +V+ G + GL N  IA  LF+S
Sbjct  129  GAAKTVVS----DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFIS  184

Query  184  EATVKGYVSRTLDKLGCVNRTQ  205
             ATVK  ++R++ KL   +R Q
Sbjct  185  PATVKTHLNRAMTKLHARDRGQ  206

624) SCAT_p1010 in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 93/202 (47%), Positives = 136/202 (68%), Gaps = 13/202 (6%)

Query  12   EPMVCVFLRTILGSAEDIEVVGEAHDGAAGVEAVLRSRPDVVLMDLRMPGMDGLAAIE--  69
            ++M+   LR IL  A +I V+GEA DG ++   +  SRPDVVLMDLRMP +DG++A    
Sbjct  10   QAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAAL  68

Query  70   RITALADPPRIVVLTTFDADQYVLRALRAGATGFLVKSTPPEELIGLVRTAAQGHTVLSP  129
            R  +  ++ RI+VLTTFD+D+ VL ALRAGA GFL KS+ +E LI+ V + A+G+T LS+
Sbjct  69   RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSA  128

Query  130  SAARRLVAASTDGLTARDRAR---ELV---GTLTEREVQVLAGLGAGLSNAQIAARLFLS  183
            +AA+ +V+    +L  R+R+    EL+   +TLT+RE +V+ G + GL N  IA  LF+S
Sbjct  129  GAAKTVVS----DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFIS  184

Query  184  EATVKGYVSRTLDKLGCVNRTQ  205
             ATVK  ++R++ KL   +R Q
Sbjct  185  PATVKTHLNRAMTKLHARDRGQ  206

625) B737_0968 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 151/221 (69%), Gaps = 10/221 (4%)

Query  1    MIRVLLADDQPLIRSGFRALLDVEDDIEVVAEAGDGGEAVRLALEHLPDIALVDVQMPGV  60
            MI V+L DDQ++IR+G+R++L+ + +I V++EA+DG  A  +     PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRiaahpalaavhvvilTNYGLDEYVFEALRAGAAGFLVKDIQPEDFLHAVRVA  120
            DG+ AT  + A+P L AV++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRKLID------RYVTQ-PLVPGAGLAELTNREREAVSLVARGLSNEEI  173
            A+GD+ L+++ ++ ++       R  T+  L++ +  A LT+RE + V   ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  174  AGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLVA  214
            A  + ISP T KTH+NRAM KLHARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

626) RAM_04945 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 151/221 (69%), Gaps = 10/221 (4%)

Query  1    MIRVLLADDQPLIRSGFRALLDVEDDIEVVAEAGDGGEAVRLALEHLPDIALVDVQMPGV  60
            MI V+L DDQ++IR+G+R++L+ + +I V++EA+DG  A  +     PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRiaahpalaavhvvilTNYGLDEYVFEALRAGAAGFLVKDIQPEDFLHAVRVA  120
            DG+ AT  + A+P L AV++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRKLID------RYVTQ-PLVPGAGLAELTNREREAVSLVARGLSNEEI  173
            A+GD+ L+++ ++ ++       R  T+  L++ +  A LT+RE + V   ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  174  AGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLVA  214
            A  + ISP T KTH+NRAM KLHARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

627) AMES_0967 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 151/221 (69%), Gaps = 10/221 (4%)

Query  1    MIRVLLADDQPLIRSGFRALLDVEDDIEVVAEAGDGGEAVRLALEHLPDIALVDVQMPGV  60
            MI V+L DDQ++IR+G+R++L+ + +I V++EA+DG  A  +     PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRiaahpalaavhvvilTNYGLDEYVFEALRAGAAGFLVKDIQPEDFLHAVRVA  120
            DG+ AT  + A+P L AV++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRKLID------RYVTQ-PLVPGAGLAELTNREREAVSLVARGLSNEEI  173
            A+GD+ L+++ ++ ++       R  T+  L++ +  A LT+RE + V   ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  174  AGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLVA  214
            A  + ISP T KTH+NRAM KLHARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

628) AMED_0971 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 151/221 (69%), Gaps = 10/221 (4%)

Query  1    MIRVLLADDQPLIRSGFRALLDVEDDIEVVAEAGDGGEAVRLALEHLPDIALVDVQMPGV  60
            MI V+L DDQ++IR+G+R++L+ + +I V++EA+DG  A  +     PD+ L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRRiaahpalaavhvvilTNYGLDEYVFEALRAGAAGFLVKDIQPEDFLHAVRVA  120
            DG+ AT  + A+P L AV++++LT ++ DE V+ ALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ARGDALLAPSITRKLID------RYVTQ-PLVPGAGLAELTNREREAVSLVARGLSNEEI  173
            A+GD+ L+++ ++ ++       R  T+  L++ +  A LT+RE + V   ARGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  174  AGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLVA  214
            A  + ISP T KTH+NRAM KLHARDR+QLV +A+ SGLV 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

629) Noca_3643 in NC_008699


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 146/219 (67%), Gaps = 8/219 (3%)

Query  1    MITVAIADDQPLVRSGLRMILEGEPDIEIvgeaadgadavalvtagaPDVLLLDVQMPEV  60
            MI V + DDQ+++R+GLR ILE +++I ++GEAADG  A A++ ++ PDV+L+D++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAMTEIEASE--SSTRVLMLTTFDLDEYVYQAMRAGAAGFLLKDMAGEDIVAAVRQV  118
            DG++A + + A    ++ R+L+LTTFD DE V  A+RAGA GFL K   +E ++AAV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AHGADALLAPAVTRRLVDRYTRERRRPPAPAL----DQLTPREHDVLRLIAAGLSNAEIA  174
            A G D+ L+++ ++ +V    R  R +    L      LT RE DV+   A GL N  IA
Sbjct  120  AKG-DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  175  AELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYESGLM  213
             +LFI+ +TVKTH+ R + KL+ RDR Q V +A+ SGL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

630) SAV_5624 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 144/220 (66%), Gaps = 6/220 (2%)

Query  4    VRVVLADDQQLIRTALRMVIADLADMDVVGEAANGEEAVRLADELRPDVVVMDIRMPGTD  63
            + VVL DDQ +IR++LR ++ D A++ V+GEAA+G  A  +    RPDVV+MD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRITEAP--GDVRILMLTTFDDDDYVYGALRAGASGFLVKDMGLDDILAAVRVVA  121
            G+ AT  +   P    VRIL+LTTFD+D+ V +ALRAGA GFL K  + + ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGDALIAPGVTRRLIQDF---VASPEQPrarrelteitererevltlvgtgltNTEIAER  178
             GD+ +++G ++ ++ D+     S+ +       + +T+RE +V+   + GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLVAPA  218
            LFIS AT KT L R ++KL+ARDR QLV IA+ +GLV  A
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

631) O3I_032020 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (424),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 147/217 (68%), Gaps = 2/217 (0%)

Query  3    ITVLIADDQAMVRQGFGALLAAQTDISVVGDAPDGKIAVAEAKRLRPDVVLMDVRMPEMN  62
            I V++ DDQAM+R G+ ++L  +++I V+G+A+DG+ A A  +  RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAARAILAAGFDPPVRVLMLTTFDIDDYVYEALSIGASGFLLKDAPAEELvravrvva  122
            G++A+ A+ A     +VR+L+LTTFD D+ V  AL  GA GFL K A +E L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  DGQALLAPTVTRRLIADVtsrrsaarakp-apalatltprEREVLELIAKGMSNTEIAET  181
             G++ L++  ++ +++D+  R  +A      +  ATLT RE +V+   A+G+ N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV  218
            LF++  TVKTH+++  +KL+ RDR+Q V +A+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

632) B737_3513 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 95/228 (42%), Positives = 145/228 (64%), Gaps = 18/228 (7%)

Query  3    VRVLVADDQHLMRAGLRGIVGTAADLTVIAEASTGLQAVDLARRERPDVVLMDIRMPDMD  62
            + V++ DDQ ++RAGLRGI+  A+ + VI+EA+ G  A  + R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLITASTD---VRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAAIRVIA  119
            G+ AT  + A  D   VR+L+LTTFD D+ V  ALR+GA+GFL K + +  L+AA+  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  SGDALLAPSITRRLIaefaarpeparpgtagapgpgfaetgaagpDPLASITDRERQVLA  179
             GD+ L+++ ++ +++++  R  +A      A                A++T+RE +V+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--------------ATLTHRETDVVL  166

Query  180  LVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYRA  227
              A GL N  IAR L I+P+T KTH+   +TKL+ARDR +LV  A+R+
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

633) RAM_18060 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 95/228 (42%), Positives = 145/228 (64%), Gaps = 18/228 (7%)

Query  3    VRVLVADDQHLMRAGLRGIVGTAADLTVIAEASTGLQAVDLARRERPDVVLMDIRMPDMD  62
            + V++ DDQ ++RAGLRGI+  A+ + VI+EA+ G  A  + R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLITASTD---VRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAAIRVIA  119
            G+ AT  + A  D   VR+L+LTTFD D+ V  ALR+GA+GFL K + +  L+AA+  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  SGDALLAPSITRRLIaefaarpeparpgtagapgpgfaetgaagpDPLASITDRERQVLA  179
             GD+ L+++ ++ +++++  R  +A      A                A++T+RE +V+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--------------ATLTHRETDVVL  166

Query  180  LVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYRA  227
              A GL N  IAR L I+P+T KTH+   +TKL+ARDR +LV  A+R+
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

634) AMES_3513 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 95/228 (42%), Positives = 145/228 (64%), Gaps = 18/228 (7%)

Query  3    VRVLVADDQHLMRAGLRGIVGTAADLTVIAEASTGLQAVDLARRERPDVVLMDIRMPDMD  62
            + V++ DDQ ++RAGLRGI+  A+ + VI+EA+ G  A  + R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLITASTD---VRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAAIRVIA  119
            G+ AT  + A  D   VR+L+LTTFD D+ V  ALR+GA+GFL K + +  L+AA+  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  SGDALLAPSITRRLIaefaarpeparpgtagapgpgfaetgaagpDPLASITDRERQVLA  179
             GD+ L+++ ++ +++++  R  +A      A                A++T+RE +V+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--------------ATLTHRETDVVL  166

Query  180  LVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYRA  227
              A GL N  IAR L I+P+T KTH+   +TKL+ARDR +LV  A+R+
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

635) AMED_3552 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (423),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 95/228 (42%), Positives = 145/228 (64%), Gaps = 18/228 (7%)

Query  3    VRVLVADDQHLMRAGLRGIVGTAADLTVIAEASTGLQAVDLARRERPDVVLMDIRMPDMD  62
            + V++ DDQ ++RAGLRGI+  A+ + VI+EA+ G  A  + R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLITASTD---VRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAAIRVIA  119
            G+ AT  + A  D   VR+L+LTTFD D+ V  ALR+GA+GFL K + +  L+AA+  +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  SGDALLAPSITRRLIaefaarpeparpgtagapgpgfaetgaagpDPLASITDRERQVLA  179
             GD+ L+++ ++ +++++  R  +A      A                A++T+RE +V+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--------------ATLTHRETDVVL  166

Query  180  LVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYRA  227
              A GL N  IAR L I+P+T KTH+   +TKL+ARDR +LV  A+R+
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

636) SGR_4105 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (424),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 150/217 (70%), Gaps = 3/217 (1%)

Query  5    IRVMLVDDQVLLRTGFRMVLAAQPDMevvaeagdgaeaieiLRSTAVDVVLMDVRMPRLD  64
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ ++R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRICAQQD--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAAIRSVH  122
            GV AT  + A+ D  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGDAVVAPSTTRRLLDRFSPMLPSGDKEPKNKHVGKLTEREREVMLLVAQGLSNGEIAAR  182
             GD+ +++++++ ++  +     S+       + + LT+RE +V+L  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV  219
            L +S ATVKTH+ R +TKL+ RDR Q+V +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

637) CMM_2066 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (425),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 91/221 (42%), Positives = 139/221 (63%), Gaps = 4/221 (1%)

Query  1    MIRIVLVDDQELFRGGVRVALDAQPDLEVVGEAGDGRQGLAVIDEVRPDVVLLDMRMPVM  60
            MI +VLVDDQ ++R+G+R  L+ ++++ V+GEA+DGR ++AVI   RPDVVL+D+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLETVRALFDGTRDAPPRVIVLTTFALDRASATAIRGGASGFLLKDATPAFLAAAIRAV  120
            DG+ +  AL  +    + R++VLTTF  D    +A+R+GA GFL K A +  L AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HAGSAVLAPDELTQLFTS---DATaapappappaFRSLSAREKDVFGHVARGLSNAEVAA  177
              G + L+++    + +     + +A      +   +L+ RE DV    ARGL N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  LEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLVERA  218
              F+S +TVKTH++  ++KL  RDR QLV  A    LV+RA
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

638) Strvi_3040 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (425),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 134/218 (62%), Gaps = 13/218 (5%)

Query  1    MIRILIADDHPVVREGLRGMLGAEPDLTVVGEADSGPRAEALCVSLRPDVVLMDLRMP--  58
            MI +++ DD++++R GLRG+L  ++++ V+GEA  G  A A+  + RPDVVLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  59   DGGGVESIARMTAAGLPSRVIVLTTYETDGDILRAVEAGAAGYLLKDMARAELAEAVRSA  118
            DG G  +  R  +   + R++VLTT++ D ++L A+ AGA G+L K      L  AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGETVLAPSVAARLMDQLRDR----------PERPRLSERETAVLRLVAQGCTNAEIGR  168
            A+G+T L+++ A  ++ +LR R          +  + L++RET V+   A+G  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  RLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL  206
             LFI+ +TVKTHL RA  KL   DR   V+ A R GL+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

639) Strvi_6965 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 141/219 (65%), Gaps = 8/219 (3%)

Query  17   IVLVDDERMVRTALRAILSSEPDLEVVGEAGSGAEAVPVVRELRPDVVLMDVRMPDVDGI  76
            +VLVDD+ M+R++LR+IL  ++++ V+GEA+ G  A +V+R  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  77   RATERILSTMA-DPPRVIVVTTFENDSYVYDALRAGASGFLLKRARAEDLVQAVRLVARS  135
             AT  + +    ++ R++V+TTF+ D  V  ALRAGA GFL K A +E L+ AV  VA++
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  136  DSLLFPaavralaaehaaaRGPDREASARALGER---LSEREAVVLRLMTDGLSNSEIAA  192
            D+ L   +  A  +  +  R  +R A+   L  R   L++RE+ V+   + GL N  IA 
Sbjct  123  DTSL---SAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  193  RMAVGPATVKTHVGAVLTKLGVRDRTQAVIAAYESGFVT  231
             + ++PATVKTH+   +TKL  RDR Q V  A+ SG+V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

640) Ndas_2024 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 139/218 (64%), Gaps = 13/218 (5%)

Query  10   VLIVDDDALVRGGLTMMLDGVHGIAVVGEARDGDEVLAAADAHRPDVVLMDLRMPRVDGI  69
            V++VDD+A++R+GL  +L++  GI V+GEA DG   +A   + RPDVVLMDLRMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  70   tatrr--lrartpppEVVVLTTFDTDENILYALRAGASGFLLKDTPPARIVDAVLRVAEG  127
             AT      +   +  ++VLTTFD DE++L ALRAGA GFL K + +  ++ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  EPILSASVTRRLMD------RTAVQAGSHERARTALARLSPREHEVALAVARGRTNAEIA  181
            +  LSA+ ++ ++       R+A +     R+ T    L+ RE +V L+ ARG  N  IA
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDNVSIA  178

Query  182  AQLYMSVATVKAHVSNVLAKLDMDNRTQIALLAHDAGL  219
             +L++S ATVK+H++  ++KL+  +R Q+  +A  +GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

641) Tbis_1846 in NC_014165


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 91/222 (41%), Positives = 141/222 (64%), Gaps = 10/222 (4%)

Query  3    IRVLLADDQPLLRTGFRLILEAEQDITVVGEAGDGATALEQARALLPDVVLMDIRMPGVD  62
            I V+L DDQ+++R+G+R ILE + +I V+GEA+DG +A+   R+  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRIVREQKGGHVPRVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRVV  122
            G+ AT   +R + + +  R+LVLTTFD DE ++ ALRAGA GFL K   ++ L+ A+  V
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGDAIVAPSVTRRLLDKFAALLPPADRQPTPAllerlterelevlrlI----AKGMSNA  178
            A GD+ ++++ ++ ++      L   +R +T   L   T    +    +    A+G+ N 
Sbjct  120  AKGDTSLSAGAAKTVVSD----LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  179  EIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLV  220
             IA +L +S +TVKTH+   +TKL  RDR Q V +A+ +GLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

642) FraEuI1c_2558 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (424),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 101/220 (46%), Positives = 147/220 (67%), Gaps = 20/220 (9%)

Query  42   IQVLVVDDHPVVRSGLVGMLASQPDLRVVGTAADG---YEAVARAGELRPDVVLMDLRMP  98
            I+V++VDD++++R+GL G+L  ++++RV+G AADG   + AV R++  RPDVVLMDLRMP
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAF-AVIRGS--RPDVVLMDLRMP  57

Query  99   RLDGVAAIE--RITAAGPDVAVLVLTTYdgdadivravaagaagYLLKDAPLETLAEAVR  156
             LDGV+A    R  +    V +LVLTT+DGD +++ A+ AGA G+L K A  E+L  AV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  157  AVARGETVLAPPVAARLASRLR-----------APDPVTLTRRETEVLAAVARGRTNAEI  205
            AVA+G+T L++  A  + S LR            +   TLT+RET+V+ + ARG  N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  206  GRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL  245
            +R+LFI+ ATVKTHL R  +KL+  DR + V+ A+  GL+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

643) DSC_06110 in NC_016147


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (424),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 141/218 (65%), Gaps = 6/218 (2%)

Query  1    MIRVCLVDDQNLVRQGIRSLLALDDGIEVVGEAADGRQAVELIPQLKPDVVLMDMRMPVM  60
            MI V LVDDQ ++R G+R++L  D GI V+GEAADGR A  +I   +PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGlealqalarlqqlPPS--IILTTFDDDQLVLAGLKAGARGYLLKDVSLEQLVGAIRAV  118
             G+ A  AL    +L +   ++LTTFD+D+ VLA+L+AGA G+L K    E L++A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGGSLVQPAVTQRLLSGLEHMRNEFFSLD---RPDPLTDRETEILRLMASGFSNKEIAN  175
            A G++ + ++ ++ ++S+L +       ++   R   LT+RET+++   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  SLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV  213
             L ++ +T+K H++  ++KL  RDR + V  AF   LV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

644) DR_0432 in NC_001263


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  116 bits (424),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 143/220 (65%), Gaps = 10/220 (4%)

Query  1    MIRVLLADDHALFRQGLRSLLESEGMRVIGEAANGREAVRYAADTQPDVILMDIQMPELD  60
            MI V+L DD+A++R GLR++LE  G+RVIGEAA+GR A     +++PDV+LMD++MP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVKATQSILEINPQ---ARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDAITRV  117
            GV AT + L  +P+    R++++T +  D  V+ A++AGA G++ K AD+ +LI A+  V
Sbjct  61   GVGATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGEALLDADMAQNVLDDFRDKREELPSE-----KHADLNERETMILKLLAQGFSNQDIA  172
            A G++ L A+ A+ V+ D+R +R   +++     + A L +RET ++   A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIAN  212
              L IS  TV+ +L+   TKL+  +R Q    A+R G+ N
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

645) BN6_29950 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (421),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 136/219 (63%), Gaps = 16/219 (7%)

Query  1    MIRVVIVDDHPVVRDGLRGMLaaagdvdvvgeaadgaeaeavvRAKNPDVVLMDLRMPGV  60
            MI VV+VDD++++R GLRG+L  AG   +   A + +    + R+  PDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPIL  59

Query  61   DGVTAIGRLRDFPA----RVLVLTTYDTDSDVLPAIKAGATGYLLKDTPREELFRAVRSA  116
            DGV A + LR  P     R+LVLTT+D D +VL+A++AGA G+L K +  E L+ AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  ARGEAVLSPSVATRLVGQVR-----------APTAEPLSEREVEVLGLIARGCTNREAAV  165
            A+G++ LS++ A  +V+++R            + +  L++RE +V+   ARG  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  166  RLFISEATVKTHLVHVYAKLGVKDRASAVAEAYERGLLG  204
             LFIS ATVKTHL +  +KL  +DR+  V+ A+  GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

646) B737_8329 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 136/220 (62%), Gaps = 16/220 (7%)

Query  1    MIRVMLVDDHPVVREGLRGMLEAEPDLTVVGEAGSGDEAVALDRVAVPDVVLMDLRMPGL  60
            MI V+LVDD++++R GLRG+LE ++++ V+GEA+ G  A A+ R + PDVVLMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVGATKRILREQP---GRRIVVLTTYETDADILRAVEAGASGYLLKDasraelanaira  117
            DGVGAT   LR +P   + RI+VLTT++ D ++L A+ AGA G+L K A    L  A+ A
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aarGETVLAPSVAGKLVNRVRN-----------PEPQPLSAREVEVLRLVAKGGTNADIG  166
             A+G+T L+++ A  +V+ +R            +    L+ RE +V+   A+G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  167  RALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLLG  206
            R L IS ATVKTHL R   KL   DR   V+ A    L+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

647) B737_9136 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 150/220 (69%), Gaps = 5/220 (2%)

Query  1    MIRVLIADDQEMVRMGFRMILDAQDDIEvvadvadgvsavskaRELRPDVCLLDIRMPGL  60
            MI V++ DDQ M+R G+R IL+ + +I V+++ ADG SA +  R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVARQL-AGPDVTDPLKVVVVTTFDLDEYVHTALRNGASGFLLKDAGPALLIEAVRA  119
            DG+  +  L A+PD+ ++++++V+TTFD DE V +ALR GA GFL K A++  LI AV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  ADRGDALVSPQITVRLLKHF--DGSGSAKRQVKPPSEPLTARELDVVKAAARGLTNTEIG  177
              +GD+ +S+  +  ++ ++   G +++  ++ + +  LT RE DVV +AARGL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  AELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGVVS  217
             +LF+S +TVKTHL    +K+ AR+R +  + A RSG+V+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

648) RAM_43415 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 136/220 (62%), Gaps = 16/220 (7%)

Query  1    MIRVMLVDDHPVVREGLRGMLEAEPDLTVVGEAGSGDEAVALDRVAVPDVVLMDLRMPGL  60
            MI V+LVDD++++R GLRG+LE ++++ V+GEA+ G  A A+ R + PDVVLMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVGATKRILREQP---GRRIVVLTTYETDADILRAVEAGASGYLLKDasraelanaira  117
            DGVGAT   LR +P   + RI+VLTT++ D ++L A+ AGA G+L K A    L  A+ A
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aarGETVLAPSVAGKLVNRVRN-----------PEPQPLSAREVEVLRLVAKGGTNADIG  166
             A+G+T L+++ A  +V+ +R            +    L+ RE +V+   A+G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  167  RALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLLG  206
            R L IS ATVKTHL R   KL   DR   V+ A    L+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

649) RAM_47550 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 150/220 (69%), Gaps = 5/220 (2%)

Query  1    MIRVLIADDQEMVRMGFRMILDAQDDIEvvadvadgvsavskaRELRPDVCLLDIRMPGL  60
            MI V++ DDQ M+R G+R IL+ + +I V+++ ADG SA +  R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVARQL-AGPDVTDPLKVVVVTTFDLDEYVHTALRNGASGFLLKDAGPALLIEAVRA  119
            DG+  +  L A+PD+ ++++++V+TTFD DE V +ALR GA GFL K A++  LI AV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  ADRGDALVSPQITVRLLKHF--DGSGSAKRQVKPPSEPLTARELDVVKAAARGLTNTEIG  177
              +GD+ +S+  +  ++ ++   G +++  ++ + +  LT RE DVV +AARGL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  AELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGVVS  217
             +LF+S +TVKTHL    +K+ AR+R +  + A RSG+V+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

650) AMES_8328 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 136/220 (62%), Gaps = 16/220 (7%)

Query  1    MIRVMLVDDHPVVREGLRGMLEAEPDLTVVGEAGSGDEAVALDRVAVPDVVLMDLRMPGL  60
            MI V+LVDD++++R GLRG+LE ++++ V+GEA+ G  A A+ R + PDVVLMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVGATKRILREQP---GRRIVVLTTYETDADILRAVEAGASGYLLKDasraelanaira  117
            DGVGAT   LR +P   + RI+VLTT++ D ++L A+ AGA G+L K A    L  A+ A
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aarGETVLAPSVAGKLVNRVRN-----------PEPQPLSAREVEVLRLVAKGGTNADIG  166
             A+G+T L+++ A  +V+ +R            +    L+ RE +V+   A+G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  167  RALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLLG  206
            R L IS ATVKTHL R   KL   DR   V+ A    L+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

651) AMES_9135 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 150/220 (69%), Gaps = 5/220 (2%)

Query  1    MIRVLIADDQEMVRMGFRMILDAQDDIEvvadvadgvsavskaRELRPDVCLLDIRMPGL  60
            MI V++ DDQ M+R G+R IL+ + +I V+++ ADG SA +  R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVARQL-AGPDVTDPLKVVVVTTFDLDEYVHTALRNGASGFLLKDAGPALLIEAVRA  119
            DG+  +  L A+PD+ ++++++V+TTFD DE V +ALR GA GFL K A++  LI AV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  ADRGDALVSPQITVRLLKHF--DGSGSAKRQVKPPSEPLTARELDVVKAAARGLTNTEIG  177
              +GD+ +S+  +  ++ ++   G +++  ++ + +  LT RE DVV +AARGL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  AELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGVVS  217
             +LF+S +TVKTHL    +K+ AR+R +  + A RSG+V+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

652) AMED_8457 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 96/220 (44%), Positives = 136/220 (62%), Gaps = 16/220 (7%)

Query  1    MIRVMLVDDHPVVREGLRGMLEAEPDLTVVGEAGSGDEAVALDRVAVPDVVLMDLRMPGL  60
            MI V+LVDD++++R GLRG+LE ++++ V+GEA+ G  A A+ R + PDVVLMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVGATKRILREQP---GRRIVVLTTYETDADILRAVEAGASGYLLKDasraelanaira  117
            DGVGAT   LR +P   + RI+VLTT++ D ++L A+ AGA G+L K A    L  A+ A
Sbjct  60   DGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aarGETVLAPSVAGKLVNRVRN-----------PEPQPLSAREVEVLRLVAKGGTNADIG  166
             A+G+T L+++ A  +V+ +R            +    L+ RE +V+   A+G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  167  RALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLLG  206
            R L IS ATVKTHL R   KL   DR   V+ A    L+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

653) AMED_9272 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 95/220 (44%), Positives = 150/220 (69%), Gaps = 5/220 (2%)

Query  1    MIRVLIADDQEMVRMGFRMILDAQDDIEvvadvadgvsavskaRELRPDVCLLDIRMPGL  60
            MI V++ DDQ M+R G+R IL+ + +I V+++ ADG SA +  R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVARQL-AGPDVTDPLKVVVVTTFDLDEYVHTALRNGASGFLLKDAGPALLIEAVRA  119
            DG+  +  L A+PD+ ++++++V+TTFD DE V +ALR GA GFL K A++  LI AV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  ADRGDALVSPQITVRLLKHF--DGSGSAKRQVKPPSEPLTARELDVVKAAARGLTNTEIG  177
              +GD+ +S+  +  ++ ++   G +++  ++ + +  LT RE DVV +AARGL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  AELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGVVS  217
             +LF+S +TVKTHL    +K+ AR+R +  + A RSG+V+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

654) AS9A_4410 in NC_015564


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 93/225 (42%), Positives = 148/225 (66%), Gaps = 12/225 (5%)

Query  1    MIRVAVVDDDPLVRTALAAILGTEPdlevvgeaddgvdvPALVQNCEPDVVLMDVRMPRI  60
            MI V +VDD++++R++L +IL  ++++ V+GEA DG    A+++   PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIEATQRIAAT---GGPRVLVITTFENDSYVYDALRAGAAGFLLKRAKPDVLITAIRTL  117
            +G+ AT  + A     + R+LV+TTF+ D  V  ALRAGA GFL K A ++ LI+A+ ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ATTDALLFPESIRRLAMQQTRGRHRASSTVNL-------TARESDVLRALARGRTNAEIA  170
            A  D+ L + + + + + + R R R+++ V+L       T RE+DV+ + ARG  N  IA
Sbjct  120  AKGDTSLSAGAAKTV-VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  171  AELYLSVETVKTHVGAILGKLGARDRTQAVIFAYESGLINVGENQ  215
             +L++S  TVKTH+   + KL ARDR Q V +A+ SGL+N +E+ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

655) Bcav_3541 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 94/225 (42%), Positives = 143/225 (64%), Gaps = 19/225 (8%)

Query  1    MISLLIVDDHPVVRDGLRSMFGADPRFEVVGEARDGAEA--VVAGERLRPDVILMDLRMP  58
            MI +++VDD++++R GLR+++  D+ + V+GEA DG  A  V+ G R  PDV+LMDLRMP
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMP  57

Query  59   GVDGVTAIGEL-TQRGVTA-RVLVLTTYDTDSDVLPAIEAGATGYLLKDAPRDELFRAVE  116
             +DGV A + L ++ ++ A R+LVLTT+D D +VL+A+ AGA G+L K A  + L+ AVE
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  117  AAAQGQAVLSPAVATRLMGQMRQPApeplsrrelevlel-----------vARGSTNRDA  165
            A A+G++ LS++ A  +++++R+ +  +     +                 ARG  N   
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  166  AKHLFISEATVKTHLLHAYAKLGVNDRAAAVATAFSRGYLQPRAE  210
            A++LFIS ATVKTHL +A +KL   DR+  V+ AF  G L  RAE
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG-LVNRAE  221

656) Mvan_5522 in NC_008726


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 132/219 (61%), Gaps = 8/219 (3%)

Query  5    VIAALLVDDQELVRSGLRRILRRKDGIAVVGECADGDEVPAAVAAYRPDVVVMDLRMKRV  64
            +I  +LVDDQ ++R+GLR IL    GI V+GE ADG    A + + RPDVV+MDLRM  +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   NGIEATRRLTAA---GGPPVLALTTFSDEELLSGVLRAGASGFVLKDSPAEELIRAVRAV  121
            +G+ AT  L A     +  +L LTTF ++E + + LRAGA GF+ K + +E LI AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ARGDGFLDPSVTARVLDTY----RTAAEEPVPEAVDDLTPRELDVLRLMAKGRSNSEIAD  177
            A+GD  L ++ +  V+       R+A++  +      LT RE DV+   A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKGIVA  216
            +L IS  TVK+H+ R   KL+ RDR+  +  A++ G+V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

657) SBI_05877 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 145/219 (67%), Gaps = 13/219 (5%)

Query  5    VLIADDHAVVRQGLRMILSLDDDIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDGI  64
            V++ DD+A++R GLR IL  D +I+V+GE+++GR A  + R   PDVVLMDL MP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   SATAEIR--QDLPEVEVVALTSALDDTMVMGAVRAGAIGFLLKNAEADELRSAVKGAAAG  122
            +ATA +R   DL  V ++ LT+  +D  V++A+RAGA GFL K+A+++ L +AV + A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  RIQVSPDATSRLMGQV--RAPSGPE--------QLTEREAEVLTMLARGKSNKEIARDLR  172
               +S++A+  +++++  R+ S+ +         LT+RE++V+   ARG  N  IARDL 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  173  IGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLVPAGE  211
            I+  TVKT +++ +TKL  + R Q    A +SGLV  +E
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

658) Deipr_0158 in NC_015161


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 142/218 (66%), Gaps = 10/218 (4%)

Query  9    MIRVLLVDDHALFRQGLRSLLESEGMRVIGEAANGREALRFAADTHPDVILMDIQMPELD  68
            MI V+LVDD+A++R GLR++LE  G+RVIGEAA+GR A+    +++PDV+LMD++MP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GVKATQNILEIDP---SAKVIMITMYRQDRYVFEAVKAGARGYVLKDADSSALLDAIRRV  125
            GV AT   L  DP   + +++++T +  D  V+ A++AGA G++ K ADS +L+ A+  V
Sbjct  61   GVGATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  126  AAGEALLNPDMAQNVLDDFRDKREELPQE-----KHNDLNERETMILKLLAQGFSNQDIA  180
            A G++ L+++ A+ V+ D+R +R   + +     +   L +RET ++   A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  181  LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI  218
              L IS  TV+ +L+   TKL+  +R Q    A+R G+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

659) PALO_10285 in NC_021064


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 142/221 (65%), Gaps = 12/221 (5%)

Query  5    IRVILVDDQSLVRSGFRMLIeaeddmevvaeaSSGVEALDVLRRMPVDVALMDIRMPQMD  64
            I V+LVDDQ+++R+G+R ++E  +   +    + G  A+ V+R    DV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEA-ADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRITESP-LDT-KVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVA  122
            GV AT  +   P L++ ++L+LTTFD DE V AAL+AGA GFL K A +  L++A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDAVVAPSATRRLLDHVVPTLPSDPKAADK-----RLAVLTDREREVLVEIAKGATNAE  177
             GD+ ++++A++     VV+ L    ++A       R A LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAK----TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  178  IAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLI  218
            IA+ L+++ +TVKTH+ R ++KL+ RDR  LV +A   GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

660) SACE_1660 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (421),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 91/222 (41%), Positives = 144/222 (65%), Gaps = 10/222 (4%)

Query  1    MTRILLAEDEQIVRAGLRKILESAGDLTVIAEAGDGAEAVTGVRRHAPDVVVMDIQMPRL  60
            M  ++L +D+ ++RAGLR ILE AG + VI+EA+DG  A + +R   PDVV+MD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRQITSLP--APPKILILTMFDFDANVYSAIEAGASGFLLKDARPEELINAIRVI  118
            DG++AT  + + P   + +IL+LT FD D +V +A+ AGA GFL K A +E LI A+  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGDAMLSPSVTRRLLSHFADRNSPRGPTAV----RGLDELTPRERQILSLVGGGLSNAS  174
            A GD+ LS++ ++ ++S++  R   R++T V    R    LT RE +++   + GL N S
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVS  176

Query  175  IAKTLGATESTVKGHVSRLLMKLDCENRVQLALIAHNAGIAS  216
            IA+ L  + +TVK H++R + KL+  +R QL  IA  +G+ +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

661) ACPL_6207 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 145/218 (67%), Gaps = 5/218 (2%)

Query  3    IRVLVADDQHLMRAGLRGIVDaaagltvvaeaaNGLQAVTLARRHCPDVVLMDIRMPELD  62
            I V++ DDQ ++RAGLRGI++ A+   +   A +G  A ++ R   PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAA-DGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRVITGD---TPARVLVLTTFDLDEYVYAALRAGASGFLLKDTAPADLHTAIRVVA  119
            G+ AT  + +D    + R+LVLTTFD DE V AALRAGA GFL K + +  L +A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDALLAPGVTRRLIAEFaarpgpvapgagvppgwaavtgRERQVLALVAEGLSNAEIGA  179
             GD+ L++G ++ +++++  R G  A +  + +  A++T RE +V+   A GL N  I+ 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  RLHITAGTAKTHVGSLLTKLDARDRVQLVVLAYRGGLV  217
             L I+++T KTH+   +TKL+ARDR QLV +A+R+GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

662) AORI_8019 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 150/220 (69%), Gaps = 6/220 (2%)

Query  1    MIRVLIADDQDMVRIGFRMILDAQDDIEvvadvadgvsavakaRELRPDVCLLDIRMPGI  60
            MI V++ DDQ M+R G+R IL+ + +I V+++ ADG SA A  R  RPDV L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEVTKQL-AGPDVSDPLKVVVVTTFDLDEYVHTALRNGASGFLLKDAGPALLIEAVRA  119
            DG+  T  L A+PD+ ++++++V+TTFD DE V +ALR GA GFL K A++  LI AV A
Sbjct  60   DGVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  120  AARGDALVS---PQITVRLLKHFDGGAVKRDVSPPSEPLTARELDVVKAAAKGLTNTEIG  176
             A+GD+ +S   ++  V  L++ + +A   ++ + +  LT RE DVV +AA+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  AELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSGVVD  216
             +LF+S +TVKTHL     K+ AR+R ++ + A RSG+V+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

663) Strvi_8942 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 142/219 (65%), Gaps = 13/219 (5%)

Query  8    VLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDGV  67
            V++ DD+A++R GLR IL  D  I+V+GE+++GR A  + R   PDVVLMDL MP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   SATAEIR--QDLPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNAVKAAAVG  125
            +ATA +R   DL  V ++ LT+  +D  V++A+RAGA GFL K+A+++ L  AV A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  126  QIHVSPAAISRLMGQV--REPSGPE--------QLTERETEVLTMLARGKANKEIAHDLR  175
            +  +S++A   +++++  R  S+ +         LT+RET+V+   ARG  N  IA+DL 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  IGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLVPAGE  214
            I+  TVKT +++ +TKL  + R Q    A +SGLV  +E
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

664) SCAB_39621 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 90/222 (41%), Positives = 147/222 (67%), Gaps = 3/222 (1%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQTVRTTEVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+  +R +  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAEQD--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAAIRAVH  120
            GV AT  + A+ D  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFAPMLPSTGSEPRHKelerlterereVMILVAQGLSNGEIAAR  180
             GD+ +++++++ ++  +     S+           LT+RE +V++  A+GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLVRAGGQ  222
            L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

665) Caci_8900 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (417),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 102/219 (47%), Positives = 152/219 (70%), Gaps = 6/219 (2%)

Query  3    IRVLIADDQAMVRAGFGALLAAQPDIevvgdaadgaqalaeaaaHQPDVVLMDVRMPVMD  62
            I V++ DDQAM+RAG+ ++L  +++I V+G+AADG  A+A   + +PDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAARRILAGAPE--RPRILMLTTFDLDDYVYAALRAGASGFLLKDAPAAELVHAVRVV  120
            G+ A+   L + P+    RIL+LTTFD D+ V AALRAGA GFL K A +  L+ AV  V
Sbjct  61   GVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGDALLAPSVTRRLIADFAAR-RPADQSGPVA-VAALTPRELDVLRLIARGLSNQEIAG  178
            A GD+ L+++ ++ +++D+  R R+A +   +A  A+LT RE DV+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGLVT  217
            +L ++  TVKTH++R ++K   RDR+Q V +A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

666) Amir_4260 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 103/221 (47%), Positives = 150/221 (68%), Gaps = 6/221 (2%)

Query  1    MISVVLVDDQAVVRAGFRVILDSEDDLRvvgeaadgagavdlvaRLKPDVVCMDVRMPGG  60
            MI VVLVDDQA++RAG+R IL+ + ++RV+GEAADG +A  ++   +PDVV MD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGltatrritttla-DPPPVLVVTTFDLDEYVFGALEAGASGFVLKDCDPEDLVSAIRRL  119
            DG+ AT  + +    ++  +LV+TTFD DE V++AL AGA GF+ K  D+E L++A+  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AAGQGLLDQAVTRRVIGEFARRAPLPAVDPAV---EDLLTAREKEVVVLLAEGRSNVEIA  176
            A G+  L  + ++ V++++ RR+  +A D  +      LT RE +VV+  A G  NV IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGR-SATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  EALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGLAAR  217
              LFI P+TVK+HL RAMTK+ ARDR Q V  A+++GL  R
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

667) MTES_0211 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (417),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 130/200 (65%), Gaps = 4/200 (2%)

Query  7    IRVLVADDQAIVREGLATVLALLPDVEVVGTAADGEEAVALAVQRHPDVVLMDLRMPRLD  66
            I V++ DDQA++R GL  +L   +++ V+G AADG  A A+    +PDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GVAATARLVVD--VPSAAVLVLTTFADDESIVAALTAGAKGYLTKDAGRAELAAAVRSVA  124
            GV+ATA L  D  + +  +LVLTTF +DE ++AAL AGA G+L+K A+   L AAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  RGQAIFSAEVGATIVDSLTRPRPTTSPGEGLAARFPRLTRREIDVLALLVEGCTNAEIAE  184
            +G++ +SA  + T+V  L R R  ++ +  L AR + LT+RE DV+     G  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  185  RLFVEVSTVKTHVIALFAKL  204
             LF+  +TVKTH+    +KL
Sbjct  180  DLFISPATVKTHLNRAMTKL  199

668) MODMU_0226 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 103/225 (46%), Positives = 160/225 (72%), Gaps = 7/225 (3%)

Query  7    IRVVLVDDQQLVRAGFRMVIDSQPDLTvvgeagdgaaavdlvrgTAADVVLMDVRMPGTD  66
            I VVLVDDQ ++RAG+R +++ ++++ V+GEA+DG +A  ++RG+ +DVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GIAATAQVTALPD--PPRVVVLTTFDLDEYVVAAIGAGASGFLLKDAPPEEMLAAVRTVH  124
            G++ATA + A PD  + R++VLTTFD DE V+AA+ AGA GFL K A +E ++AAV +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGDSVIAASSTRRLLQHVAPMLRGSAGTTTAQADPRALAELTPREKEVLVLMAYGASNTE  184
             GD+ ++A++++ +   V+ + R + ++T  +  +R+ A LT RE +V++  A G  N  
Sbjct  121  KGDTSLSAGAAKTV---VSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVS  176

Query  185  IAARLFVSEATVKTHVGRVLGKTGSRDRVQAVVLAYRTGLVAPAD  229
            IA  LF+S ATVKTH+ R + K  +RDR Q V +A+R+GLV  A+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

669) CMS_2124 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 91/209 (44%), Positives = 135/209 (65%), Gaps = 9/209 (4%)

Query  2    GFRMVLDAEPGIEVVGEAADGRAAVQRTGELAPDIVLMDVRMPGMDGIDATAEIVARH--  59
            G+R +L+ ++GI V+GEAADGR+A        PD+VLMD+RMP +DG++ATA + A    
Sbjct  16   GLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL  74

Query  60   PATRVIVLTTFDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRM  119
             A R++VLTTFD DE  +A+LRAGA GFL K + +E L+ A+ AVA GD+++S+  ++ +
Sbjct  75   NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTV  134

Query  120  IELLGPTMPatggaagtgegaaDPRLRPLTARELEVLTALAEGLTNQEIAGRLFLSESTV  179
            +  L     ++ +          +R   LT RE +V+ + A GL N  IA  LF+S +TV
Sbjct  135  VSDLRRRGRSATDVELI------ARTATLTHRETDVVLGAARGLDNVSIARDLFISPATV  188

Query  180  KTHVGRVLAKLEVRDRVQAVILAYDCGLV  208
            KTH+ R ++KL+ RDR Q V +A+  GLV
Sbjct  189  KTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

670) Snas_0607 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (415),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 148/219 (68%), Gaps = 7/219 (3%)

Query  3    IRVTVADDQAMVRSGLRFILEDQPDITVVGEAADGVEAIELARRVRPDVCVVDIRMPRLD  62
            I V + DDQAM+R+GLR ILED ++I V+GEAADG  A+ + R  RPDV ++D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAVTRALAGPGVVDPLRVLIVTTFDLDEYVYGALRGGAVGFVLKDAGPVLLVEAVRAAN  122
            G++ T AL +   ++++R+L++TTFD DE V +ALR+GA GF+ K A++  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGNALISPSITLRLLSHL---APGAGEPEPDHR---LSDRELEVVRAIAIGRTNQEVAAE  176
             G++ +S++ +  ++S+L   + +A + E   R   L++RE +VV + A G  N  +A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LFISLSTVKSHVSSIQAKLGARNRVAIAAWAWEHRVVDR  215
            LFIS +TVK+H++   +KL AR+R  + + A    +V+R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

671) SAV_2438 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 143/217 (66%), Gaps = 9/217 (4%)

Query  12   VVVADDQTVVREGIVMLLGLL--PGIEVVGAAGDGHEAVKLVAELNPDVVLMDLRMPRCD  69
            VV+ DDQ+++R G   L G+L  +GI V+G A+DG+ A  ++    PDVVLMDLRMP  D
Sbjct  4    VVLVDDQAMIRAG---LRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GVEATRRIRAEH--PGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVESVL  127
            GV AT  +RA+    + +++VLTT+ +DE +++ALRAGA G+L+K A+++ ++ AVE+V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  SGDAGLSPSIQrrllerlseperGQAASSEVP--DGLTAREAEVLVLIAEGLSNHEIARR  185
             GD++LS++  + ++  L    R+ +    ++    LT RE++V++  A GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  LHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV  222
            L +S ATVKTH+N   +K   +DR+Q V  A+  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

672) Amir_4001 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 139/215 (65%), Gaps = 4/215 (1%)

Query  5    VLIADDQTLVRTGFRLILDAEDDIEVVAEAPDGEAAVRLARQLRPDVTLMDLRMPKVDGI  64
            V++ DDQ+++R+G+R IL+ + +I V++EA+DG +A  + R  RPDV LMDLRMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   RATELLAGPGVPDPLRVVVVTIYDLDENLHAALRAGACGFLLKDAGPRLLVEAVHVAARG  124
             AT  L +    +++R++V+T +D DE++ AALRAGA GFL K A++  L+ AV+  A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ESLVSPQITTRLLRDF---ARDGGprtrpttptpLTARELDVALAVARGGTNAEIAQRLS  181
            ++ +S+  +  ++ D+   +R +      +  + LT RE DV L+ ARG  N  IA+ L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  182  ITLSTVKSHLTSVQQKLGARNRTEVAIRMWEDGLV  216
            I+ +TVK+HL     KL AR+R ++       GLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

673) Cfla_0857 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 94/214 (44%), Positives = 142/214 (67%), Gaps = 4/214 (1%)

Query  7    VVLVDDQALLRAGIATILSAHPGIDVVGEAGTGAQALDVVRATRPDVVCMDVQMPDMDGL  66
            VVLVDDQA++RAG+  IL  ++GI V+GEA+ G  A+ V+R++RPDVV MD++MP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATRRIVADPGLHAA-VVVLTTFNREDYLVEALHAGAVGYLLKTSRPEQLTEAVLSAAAG  125
             AT  + ADP+L+A  ++VLTTF+ ++ ++ AL+AGA G+L K++ +E L  AV + A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  126  EGLLSPEvtraviar--avaerrparpapqpvvpLTEREQDVLALVARGLNNDEIAAELV  183
            +  LS+  +++V++     +              LT+RE DV+   ARGL+N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  184  VSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHGL  217
            +S ATVKTH++  ++KL  RDR Q V  A   GL
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

674) Sfla_3481 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 149/220 (68%), Gaps = 9/220 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMevvaeagdgaeaveILRSTAVDVVLMDVRMPRLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A  ++R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRIRARTD--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLSAIRSVH  120
            GV AT  +RA  D  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFSPMLPSGRKEPQDKHVEK---LTGREREVMMLVAQGLSNGEI  177
             GD+ +++++++ ++   S +   GR   +   + +   LT RE +V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  178  AARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV  217
            A  L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

675) SGR_1854 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (414),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 95/227 (42%), Positives = 149/227 (66%), Gaps = 11/227 (4%)

Query  2    VIRVLVADDQAVVRTAFSGLLNTQDDIEVVGEAEDGEQA--VLRAAELRPDVALLDIRMP  59
            +I V++ DDQA++R+++ G+L+ + +I V+GEA DG  A  V+R++  RPDV L+D+RMP
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGS--RPDVVLMDLRMP  57

Query  60   RLSGIDAARGIVAESG-GATRALMLTTFGLDEYVYDALTAGASGFLLKDATFPELLHAVR  118
             L G++A+ ++ A+++  A R L+LTTF+ DE V  AL AGA GFL K A    L+ AV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  119  VVAGGHALLAPEITGRLIAEFTRQRVSAPP----PRSVDGLTAREVEVLVLIARGLSNAD  174
             VA G++ L++  +  +++++ R+  SA      +R+   LT RE +V++  ARGL N  
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVS  176

Query  175  IADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLVAAGTRP  221
            IA  L I+  TVKTH+NR  +K+  RDR+Q V +A+  GLV  + +P
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

676) F750_3250 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 149/220 (68%), Gaps = 9/220 (4%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMevvaeagdgaeaveILRSTAVDVVLMDVRMPRLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A  ++R++  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRIRARTD--PPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLSAIRSVH  120
            GV AT  +RA  D  + ++L+LTTFD DE  +++L+AGA GF+ K   +  L++A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFSPMLPSGRKEPQDKHVEK---LTGREREVMMLVAQGLSNGEI  177
             GD+ +++++++ ++   S +   GR   +   + +   LT RE +V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  178  AARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV  217
            A  L +S ATVKTH+ R +TKL  RDR Q+V +A+ +GLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

677) SACTE_4995 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (414),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 137/217 (64%), Gaps = 8/217 (3%)

Query  1    MVVADDQAIVREGIVMLLGLL--PGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCD  58
            +V+ DDQA++R G   L G+L  +GI V+G A DG  A A++    PDVVLMDLRMP  D
Sbjct  4    VVLVDDQAMIRAG---LRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  59   GVEATRRIRKEH--PRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVM  116
            GV AT  +R +      +++VLTTF +D+ +++AL+AGA G+L+K A +E ++ A++AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  117  SGEAGLSPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAEGLSNREIAR  176
             G+++LS+   + ++  +      ++   L +     LT RE++V++  A GL N  IAR
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR-TATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ALHVSAATVKTHINNLFAKTGARDRTQAVRYAYGRGL  213
             L +S+ATVKTH+N   +K  ARDR Q V  A+  GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

678) Noca_2635 in NC_008699


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 93/206 (46%), Positives = 140/206 (68%), Gaps = 14/206 (6%)

Query  5    IRVVLVDDHAVIRAGLEQLLSGTADIEVVGTAADGAEALDVVRRIRPDVVLMDLQMPKVD  64
            I VVLVDD+A+IRAGL  +L +++ I V+G AADG  A+ V+R  RPDVVLMDL+MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVAATRAIMAE-GL-GVDVLVLTSFSDSERIIAALDAGAVGYLLKDADPEDVLQGIRAVS  122
            GV+AT A+ A+ +L +V +LVLT+F + E ++AAL AGA G+L K AD+E ++ ++ AV+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGESPIHPKAARALLGV--RAGSPQVQ---------LTSRETEVLTLVREGLANKQIARR  171
            +G++++ + AA+++++   R G +  +         LT RET+V+     GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  172  LDISERTVKAHLTSAFARIGVADRTQ  197
            L IS  TVK+HL  A +++   DR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

679) Sros_8800 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 93/213 (44%), Positives = 138/213 (65%), Gaps = 10/213 (4%)

Query  3    IRVLLADDQAMIRASLRIILEDQPDITVVAEAGDGVEAIEQARRTRPDVCLVDIQMPRLD  62
            I V+L DDQAMIRA+LR ILED ++I V++EA+DG  A+   R +RPDV L+D++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEVARALADAPP----RVVMVTTFDLDEYVYGALRCGAAGFVLKDAGPILLVEAVRAAY  118
            G+  + AL   P     R++++TTFD DE V +ALR GA GF+ K A++  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  SGDALISPTITLRLLRHLADRGARAKARMP----AQPLTARETEIVQAIARGRTNQEIAD  174
             GD+ +S+  +  ++ +L  RG R+ + +     +  LT RET++V + ARG  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG-RSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ELFISLSTVKGYVSGIMAKLGVRSRVKIVAWAW  207
            +LFIS +TVK  ++  M+KL  R R ++V+ A 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

680) Xcel_2601 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 95/226 (43%), Positives = 159/226 (71%), Gaps = 9/226 (3%)

Query  10   IRVALVDDQQMVRAGFRMVIDSQPDMTVVAEAGDGVEALRVLGALPVRADVVLMDVRMPR  69
            I V LVDDQ M+RAG+R +++ ++++ V++EA+DG  A+ V+ +   R+DVVLMD+RMP 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRG--SRPDVVLMDLRMPI  58

Query  70   Mdgltataa--ltsgadaPRVVVLTTFDIDEYVLEAIRSGASGFMLKDAPPEEMLGAIRT  127
            +DG+ ATAA    ++ +A R++VLTTFD DE VL A+R+GA GF+ K A +E +++A+ +
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  128  VHAGDAVIAPSSTRRLLEHLVtalptpapdtppspahaaLATLTDREREVLELMARGRSN  187
            V  GD+ +++++++ ++ +L     +++     + +    ATLT+RE +V+   ARG  N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDN  174

Query  188  TEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYETGVVHPG  233
              IA DLF++ ATVKTH+ R ++KL+ARDR Q V +A+ +G+V+ +
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

681) L083_6108 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 147/219 (68%), Gaps = 14/219 (6%)

Query  6    VIKLLIVDDHPVVRDGLRGMFAGDTRFavlgeaadgaealavaRTVDPDVVLMDLRMPGM  65
            +I +++VDD++++R GLRG++  D+ + V+GEAADG  A+AV R   PDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  66   DGVTTIRALRRQ-GFRA-RVLVLTTYDTDSDVLPAIKAGATGYLLKDTPREELFRAVCAA  123
            DGV +  ALR + ++ A R+LVLTT+D D +VL+A++AGA G+L K +  E L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  HRGESVLSPAVAGRLMGEVRSPAREP-----------LSQRELEVLGLIAQGCSNRETAT  172
             +G++ LS++ A  +++++R  +R +           L++RE +V+   A+G  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLFISEATVKTHLLHAYAKLGVRDRAAAVATAFERGLLG  211
             LFIS ATVKTHL +A +KL  RDR+  V+ AF  GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

682) BN159_3034 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 93/211 (45%), Positives = 140/211 (67%), Gaps = 13/211 (6%)

Query  1    MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVALARKLRPDLVLMDVQMPRL  60
            MI V++ +DQ+ +RAGL  IL   ++I V+GEAADG  A A+ R  RPD+VLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRQVVAER-LADV--LVLTTFDLDEYVFGALRAGASGFLLKNTEARQLLDAVRTV  117
            DGV+AT  + A+  L  V  LVLTTFD DE V++ALRAGA GFL K++++  L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGEGLIAPAVTRRLIAEFAAGPARAPRTDPAV-----LESLTRREREVLSCLGEGLSNS  172
            A G+  ++++ ++ +++++     R  R+   V       +LT+RE +V+   + GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  173  DIARRLDMAEATVKTHVSRLLGKLELRSRVQ  203
             IAR L ++ ATVKTH++R + KL+ R R Q
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

683) Cwoe_2472 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 140/221 (64%), Gaps = 5/221 (2%)

Query  1    MIRVALVDDQAIVRAGLARILSPADGFDVVAECADGQEAVERLPALRPDVVLMDVRMPRL  60
            MI V LVDDQA++RAGL  IL  A G+ V++E ADG+ A   + + RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATARLRDADDPAAV--LVLTTFGEDDVLWGAIEAGAAGFVLKDSSAEELIaavrav  118
            DG++ATA LR   D  AV  LVLTTF+ D+ + +A+ AGA GF+ K + +E LIAAV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  agggaWFDPGVAPRVLDHYRRLVAPAAregtrlelltereHDVLRLM--ARGATNAEIAA  176
            A G++ + +G A  V+ + RR   +A+         T  +++   ++  ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  TLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGVIAPG  217
             LF++ ATVKTH+    +KL+ RDR+  +  A+  G++  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

684) Snas_3676 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 95/217 (44%), Positives = 139/217 (65%), Gaps = 9/217 (4%)

Query  1    MIRVLLVDDQRLIRAGLRMLCEPAADIEVVGEADGGQAAVRLAGELCPDLVLMDLRMPGM  60
            MI V+LVDDQ +IRAGLR + E  A+I V+GEA +G++A  +     PD+VLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATQ--RILAERPSTRVVALTTFDDDDHLYPALAAGACGFLVKDTSPNELLEAIRKA  118
            DG+ AT   R  ++  + R++ LTTFD+D+++ +AL AGA GFL K + ++ L+ A+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGDTPFSAGVVKRIVDSAVRARASVPT-----ATLPKLTTREREVLALVGAGYANVDIA  173
            A GDT++SAG  K +V S +R R+  +T     A  + LT RE +V+   + G  NV IA
Sbjct  120  AKGDTSLSAGAAKTVV-SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  ERLHLGVTTVKTHIASLMTKTGCSNRVRLAVLAVRSG  210
              L ++ +TVKTH+   MTK    +R +L  +A RSG
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

685) Gobs_1030 in NC_013757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 92/215 (43%), Positives = 138/215 (65%), Gaps = 14/215 (6%)

Query  5    VLVVDDHPVVRGGLVGWLDAQPDLTVVGEASDGLEALAMVASLDPDVVLMDLRMPRMDGV  64
            V++VDD++++R+GL G L+ ++++ V+GEA+DG  A+A++ +  PDVVLMDLRMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AAIERLAGTH--PGVRVLVLTTYDTDADIVRAVAAGATGYLLKDAPLPQLADAVRAAARG  122
            +A   L +     +VR+LVLTT+D D +++ A+ AGA G+L K A    L  AV A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  ETVLAPPVAARLVS-----------rlrapaaeaptareleVLAGVARGLTNAEIGRELF  171
            +T L++  A  +VS               + + + T RE +V+ G ARGL N  I+R+LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  172  IGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL  206
            I+ ATVKTHL R  +KL   DR + V +A   GL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

686) Snas_0178 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 92/214 (43%), Positives = 143/214 (67%), Gaps = 3/214 (1%)

Query  7    SVLLVDDDPMVRNGLRMVLRADPGIVVVGEAGNGRQAVDQARELRPDVVLMDLQMPVMDG  66
             V+LVDD++M+R GLR +L  D+GI V+GEA++GR A    R  RPDVVLMDL+MP++DG
Sbjct  3    DVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDG  61

Query  67   VAATRELRGLPDAPAV--LVLTTFHLDTYILDALGAGASGYLLKDIPPTEIARAVQMAAA  124
            V+AT  LR+ PD  AV  LVLTTF+ D  +L AL AGA G+L K   +  +  AV+  A 
Sbjct  62   VGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  125  GESVFSSSVTRSLVQRVASPATDPkieaaraalaaltererevaaavaagksnaaiaseM  184
            G++ +S++ ++++V  +   +  +      A  A+LT+RE +V  + A G  N +IA ++
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  185  FMSEATVKTHVSRILTKTRSQNRVQIALTVYRAS  218
            F+S ATVKTH++R +TK ++++R Q+    +R++
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

687) SBI_05157 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 143/218 (66%), Gaps = 5/218 (2%)

Query  3    IRVVVADDQELVRSGFVMILDAQPDMevvaeagdgaaaieavRRHSPDVALLDIRMPGTD  62
            I VV+ DDQ ++R+G+  IL+ ++++ V++EA+DG +A+  +R   PDV L+D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATGTICQETD---CRVIMLTTFDSDEYVHDALHAGASGFLLKDVRRDDLVHAVRVVT  119
            G+ AT+++  + D    R+++LTTFD+DE V  AL+AGA GFL K    + L+ AV  V+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDSLLAPSVARRLVADFVRRPRETAAPR-SDRLAVLTARERETLQLLGRGLSNAEIAAE  178
             GD+ L+++ A+ +V+D+ RR R ++      R A LT RE + +   +RGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVVSEHTVKTHVSNVLTKLGLRDRIQAVICAYETGLVT  216
            L +S  TVKTH++  +TKL  RDR Q V  A+ +GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

688) VAB18032_22885 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 151/220 (69%), Gaps = 10/220 (4%)

Query  12   VRILLADDQPLLRTGFRMVLGAEPDLDIvaeagdgaeaveLSRRLLPDVVLMDIRMPRMD  71
            + ++L DDQ+++R+G+R +L  ++++ +++EA+DG  A  + R   PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  72   GVSATRAI-VDARL-PVRVLILTTFELDEYVVGGLRAGASGFLSKDVPAEDLITAIRTVA  129
            GV+AT A+  D+ L +VR+L+LTTF+ DE V+++LRAGA GFL+K   +E LI+A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  130  AGDAVVAPRILRRLLDRFADVLPDPAASPPKAL----STLTDREREVLGQVARGLSNAEI  185
             GD+ +++   + ++   +D+     ++    L    +TLT+RE +V+   ARGL N  I
Sbjct  121  KGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  186  ARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESGLV  225
            AR L +S +T+KTH+   +TKL  RDR Q V +A+ SGLV
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

689) Snas_2557 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 93/224 (42%), Positives = 154/224 (69%), Gaps = 6/224 (2%)

Query  3    ITVLIADDQAMVRAGFAALLNAQSDIDVVgeaangllalelSRQHHPDVVLMDVRMPEMD  62
            I V++ DDQAM+RAG+ ++L+ +++I V+GEAA+G  A+ + R  +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRLLGGNETEYRPKVLMLTTFDIDDYIYEALRIGASGFLLKDSPPDDLTAAVRVI  122
            G+ AT  L ++ + +   ++L+LTTFD D+ +  ALR GA GFL K + ++ L AAV  +
Sbjct  61   GVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGEALLAPSVTRRLIAEFARTRPKatats---atlasltDRETEILTLIARGLSNREIA  179
            A G++ L+++ ++ +++++ R R ++++     A  A+LT+RET+++   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  180  GRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVCAYETGLVTAGED  223
              L ++  TVKTH+ R  +KL  RDR+Q V  A+ +GLV  +E+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

690) MLP_38530 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 84/205 (41%), Positives = 133/205 (65%), Gaps = 13/205 (6%)

Query  1    MIRIILVDDHPLVREGIRGMLAGFDDIEVVGQGASGPEGVALATKLSPDLVLMDLRMPGG  60
            MI ++LVDD++++R G+RG+L +  +I V+G++A G  + A+     PD+VLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTATRQLTAS---GTARVMVLTTYESDEDILRAIEAGATGYLLKDIapgalatairaa  117
            DGV AT  L A     + R++VLTT+++DE++L A+ AGA G+L K   + +L +A+ A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  aRGETVLAPSVQSALLSRMRQPG---------PRVPTLSPQEIAVLAGAAQGKTNAAIGT  168
            A+G+T L+++   +++S +R+ G         +R +TL+ +E  V+ GAA+G  N +I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  SLHISETTVKTYLGRAYEKLGVGDR  193
             L IS +TVKT L RA  KL   DR
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDR  204

691) AORI_1695 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (413),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 143/219 (66%), Gaps = 14/219 (6%)

Query  1    MISLLIVDDHPVVRDGLRGMFSADPRFEVLgeagdgeeaiaagVKLRPDVILMDLRMPRI  60
            MI +++VDD++++R GLRG++  D+ + V+GEA+DG  A+A     RPDV+LMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTAIEEL-AKRGVTS-RILVLTTYDTDSDVLPAIQAGATGYLLKDAPRDELFRAVEAA  118
            DGV A   L A  ++ + RILVLTT+D D +VL+A++AGA G+L K A  + L+ AVEA 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AEGKAMLSPSVATRLMGQMRQPA-----------SGPLSQRELEVLELIAQGTTNREAAK  167
            A G + LS++ A  +++++R+ +           ++ L++RE +V+   A+G  N   A+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  RLFISEATVKTHLLHVYAKLGVNDRAAAVATAFSQGYLT  206
             LFIS ATVKTHL +  +KL   DR+  V+ AF  G + 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

692) ACPL_6805 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 89/199 (45%), Positives = 131/199 (66%), Gaps = 8/199 (4%)

Query  1    MIRVLLVDDQQLIRAGLRMLLDAEPGMEVIGEAGDGRTAIALAAQLVPDVIVMDLRMPGV  60
            MI V+LVDDQ +IRAGLR +L+ ++G+ VIGEA+DGR+A+A+     PDV++MDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATSRIMADR--PAIRILVLTTFGDDDHLYPALQAGACGFLLKDAPPTDLLNGIRQA  118
            DG+ AT+ + AD    A+RILVLTTF++D+++ +AL+AGA GFL K A +  L+ ++   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGESPFSQEvlrrlvrravharPEPP-----ARIDGLTTREQEVLDLVAEGLTNTEIAE  173
            A G++++S    + +V    +    +      AR   LT RE +V+   A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  RLHIGVTTVKTHITALMTK  192
             L I+ +TVKTH+   MTK
Sbjct  180  DLFISPATVKTHLNRAMTK  198

693) chiR in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 141/207 (69%), Gaps = 5/207 (2%)

Query  1    MIRVLVAEDQSAVRAGLVLILRSAPDIDVVGEAADGEQAVALARELRPDLVLMDVQMPRL  60
            MI V++ +DQ+ +RAGL  IL   ++I V+GEAADG  A A+ R  RPD+VLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRRVVAE-NLADV--LVLTTFDLDEYVFGALRAGACGFLLKNTEARQLLEAVRTV  117
            DGV+AT  + A+ +L  V  LVLTTFD DE V++ALRAGA GFL K++++  L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGEGLISPAVTRRLIAEFAAKPVREPGPDPVI-LDVLTRREREVLSCLGRGMSNAEIAA  176
            A+G+  +S++ ++ +++++  +     + + +     LT+RE +V+   +RG+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLDMAEATVKTHVSRLLGKLELRSRVQ  203
             L ++ ATVKTH++R + KL+ R R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

694) Snas_1960 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 94/220 (43%), Positives = 139/220 (64%), Gaps = 5/220 (2%)

Query  1    MIRVVVVDDEPMVCAHLRTILGSANDIEVIDTALDGAAGVEAVVRHRPDVVLMDLRMPGV  60
            MI VV+VDD++M+ A LR IL  A  I VI+ A DG ++   +   RPDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAIERIAKLPE--PPKVVALTTFDADHYVLRALRAGAMGFLVKSTPPEDLIGLVRVA  118
            DG+ A   +   P+  + +++ LTTFD+D+ VL ALRAGA GFL KS+ +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHVVLSPVAARRMVAA--SADEQSTRDELRSLVGELTERETEVLARLGEGLSNAEIGK  176
            A G+  LS+ AA+ +V+     +  +T  EL +  + LT+RET+V+   + GL N  I++
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLYLSEATVKGYVSRLLLKLGCDNRTQAGLLARDAGLTDR  216
             L++S ATVK  ++R + KL   +R Q   +A  +GL +R
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

695) Cha6605_5393 in NC_019697


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 128/195 (66%), Gaps = 9/195 (4%)

Query  1    MITLLLVDDQNLIRQGLKALLELEPDLQVVGEAENGEVAIECAKTLAPNVILMDIRMPVM  60
            MI ++LVDDQ +IR GL+++LE +++++V+GEA +G  A+   +   P+V+LMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTATREIC--RQFPKVNILVLTTFDDDTYVAAAIKYGAKGYLLKDTPSEEIAAAIRAV  118
            DGV AT  +    ++  V ILVLTTFD+D  V AA++ GA G+L K + SE + AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  DRGYTHLAPGMLAKAMSGQVAKPTTA-----LPAEVNELTPRELEVLKLIAKGASNREIA  173
             +G T L++G  AK++ +++ +   +     L A    LT RE +V+   A+G  N  IA
Sbjct  120  AKGDTSLSAGA-AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  174  QVLYISEGTVKNHVT  188
            + L+IS +TVK H+ 
Sbjct  179  RDLFISPATVKTHLN  193

696) STAUR_6623 in NC_014623


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 86/207 (42%), Positives = 130/207 (63%), Gaps = 6/207 (2%)

Query  1    MINIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRM  60
            MI++VLVDD+A+IR G+R++LE  ++++V+GEA+DG  A   +R   PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   TGLEALRAMRREA--PERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRV  118
             G+ A  A+R ++     R+++LTTFD D  V+ ALRAG  GFL K    + L  A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ANGETLLPPGVAERVQRGFTEVPQEFPHAEL---PEGLTRRELEVMRLIARGLSNREIAT  175
            A+G+T L++G A  V  ++    +   + EL      LT+RE +V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  VLGTAEGTVKNQTSNILAKLGVRDRTR  202
             L  + +TVK + +  ++KL  RDR +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

697) AS9A_3081 in NC_015564


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 90/223 (41%), Positives = 143/223 (65%), Gaps = 11/223 (4%)

Query  4    MIRVLLVDDDALVRSGLALMLGADPSIEIAGQSPDGAHAVQAVAECRPDVVLMDIRMPVM  63
            MI V+LVDD+A++R+GL  +L  D++I + G+++DG  A   +   RPDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGLTAIEQLRKNGPDPA---IIVLTTFDTDAHVLRALRLGADGFLLKDTPPRDILDAIRR  120
            DG+ A   LR + PD     I+VLTTFD D +VL ALR GADGFL K + +  ++ A+  
Sbjct  60   DGVGATAALRAD-PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  121  AAQGEPVLSPAVTRRLVDHV-TRSEEIPEYERRSQTARQALDTLTererevalavaaGMS  179
             A+G+  LS++ ++ +V ++  R+    + E  ++TA     TLT+RE +V L+ A G+ 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA-----TLTHRETDVVLGAARGLD  173

Query  180  NSEAGNALHLSIPTVKTYMSRVLAKLHCENRVQVAILVHDAGL  222
            N   +  L +S +TVKT ++R ++KLH  +R Q+  +   +GL
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

698) GPOL_c03880 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 97/207 (47%), Positives = 134/207 (65%), Gaps = 4/207 (1%)

Query  1    MTTILIADDHAAIRAGLRMMLEPAEGIDVIGEATDGDQAITGARDLRPDVVLMDVRMPGT  60
            M  +++ DD+A IRAGLR +LE A GI VIGEA+DG  A++  R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIRATEVIVGE---GICPVVVLTTFDLDEYVFGALRAGASGFLLKTASAEVIIdavrav  117
            DG+ AT  + ++       ++VLTTFD DE V++ALRAGA GFL K+A +E +I AV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  vrgdaaLSPEITRRVVDAVRttpggsptpppptALDDLTARERDVLRCLGEGLANAEIAS  177
             +GD++LS+  ++ VV  +R    ++      +    LT RE DV+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  TLFITEATVKTHVSRVLMKLGLESRVQ  204
             LFI+ ATVKTH++R + KL    R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

699) BN6_40820 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (411),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 97/224 (44%), Positives = 145/224 (65%), Gaps = 7/224 (3%)

Query  1    MTRVVIADDQLLVRTGFRMILTADGIDVVGEATTGAEAVDAVRRTRPDVVLMDIRMPELD  60
            M  VV+ DDQ ++R+G+R IL   GI V+GEA+ G  A   +R +RPDVVLMD+RMP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GLEATRRILTGAP--GEPRVVILTTFDLDHYVYaalsagasgfllKDVTPEHLVSAIRMV  118
            G+ AT   L + P     R+++LTTFD D+ V AAL AGA GFL K   +E L++A+  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  RAGDALLAPTITRRLVERFAHRDTGVVHRDL----ASLTPRELEVLRLLAQGLSNAELAA  174
              GD+ L++  ++ +V  + +R+ +  + +L    A+LT RE +V+   A+GL N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RLHLSEATVKTHVARILAKLDLRDRVQAVIVAYETGLVSPTAPA  218
             L +S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV+ +  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

700) SBI_04470 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  113 bits (412),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 142/221 (65%), Gaps = 6/221 (2%)

Query  1    MTTVAIADDQAMQRFGFRMLLESQDDMALVGEAETGSAAVRLCAELQPDVVLMDIRMPGL  60
            M  V + DDQAM R G+R +LE + ++ ++GEA  G +A  +    +PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATR--RIVASGGRTRVLILTTFDLDEYAHAGLRAGASGFLVKDARPEELLAGIRAV  118
            DG+ AT   R  +     R+L+LTTFD DE   A+LRAGA GFL K A +E L+A++ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ATGDAVVAPALTRRLLDRYAHHLPAPDASTADGTDPRLAALTGREREVLTAIGRGWTNGE  178
            A GD+ ++++ ++ ++    ++     ++T     +R A+LT RE +V+ + +RG  N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR---GRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  179  IAQRLVVAESTVKTHVGRILAKIGGRDRVQAVIFAYDTRLV  219
            IA+ L ++ +TVKTH+ R ++K+ +RDR Q V +A+ + LV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

701) CMM_1242 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 102/223 (46%), Positives = 158/223 (71%), Gaps = 8/223 (3%)

Query  6    IRVAVVDDHPVVRGGlaallaSADDIDVVGQAADGKAAVELAIAERPDVVLMDLRMPVLD  65
            I V +VDD++++R+GL ++L  A+ I V+G+AADG++A  +  + RPDVVLMDLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVGATARIREEA--PDVRVLVLTTYETDASILTAIEAGASGYLLKAAPEEEIlagvrava  123
            GVGATA +R ++    VR+LVLTT++ D  +L+A+ AGA G+L K+A  E ++A+V AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  rgevalapaiaaalV---RQVGRpaagpa--tptptLSPRETEVLALVAAGRTNARIARE  178
            +G+ +L+++ A ++V   R+ GR+A++    + T+TL+ RET+V+   A G  N  IAR+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLLPAAARP  221
            L ++PATVKTHL +   KL   DR + V++A   GL+  A +P
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

702) yxjL in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 84/202 (42%), Positives = 135/202 (67%), Gaps = 9/202 (4%)

Query  22   ILDSEADLTVVGDAGTGRAALEVAAATDPDVVLMDVRMPDMDGIAATAELVARDPVRP-R  80
            IL+ +A++ V+G+A+ GR+A+ V  ++ PDVVLMD+RMP +DG++ATA L A   + + R
Sbjct  20   ILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVR  78

Query  81   VLVLTTFEDDDYLFRSLRAGASGFALKRADPDELIDAIRVVARGTSLVLPDLTRRLIATH  140
            +LVLTTF++D+ ++ +LRAGA GF  K AD++ LI A+  VA+G +  L+  + + + ++
Sbjct  79   ILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDT-SLSAGAAKTVVSD  137

Query  141  APSRARGTAAL------PELTGREADVLRLVAGGLSNAEIAAELHLSRETVKTHVSSVLL  194
               R+R+++ +      + LT RE+DV+   A GL N  IA +L +S  TVKTH++  + 
Sbjct  138  LRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMT  197

Query  195  KLGARDRTQAVIAAYERGFMAR  216
            KL ARDR Q V  A+  G++ R
Sbjct  198  KLHARDRGQLVSIAFRSGLVNR  219

703) MLP_51320 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 138/210 (66%), Gaps = 8/210 (3%)

Query  4    VVRVLIADDEALLRTGLRMLLDGASGIEVVAEASDGDQAVELARATRPDVVLMDIRMPRR  63
            ++ V++ DD+A++R+GLR +L++A GI V++EA+DG  A  + R++RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   NGLDAARELASD----GMAVVMLTAFDTDDFILDALQAGAAGFLLKDTEPADLVDAVLRA  119
            +G++A+  L +D    ++ +++LT+FD D+ +L AL+AGA GFL K +++  L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AEGDLRLSPAVLARLVT-LAGAGRSPDRPAPARIDPLTRLTNREQAVAERVSRGLTNAEI  178
            A GD  LS++    +V+ L   GRS+       I   + LT+RE  V    +RGL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSA--TDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  179  ARELHVGLATVKTHLVNINTKLGTTNRVQV  208
            AR+L ++ ATVKTHL    TKL + +R Q+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQL  207

704) ACPL_2513 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (406),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 146/217 (68%), Gaps = 5/217 (2%)

Query  3    VRVLIVDDQALVRVGFRMIIEARDDLQVVGEAGDGEQALRLAAQTRPDVVLMDVRMPGMD  62
            + V++VDDQA++R G+R I+E   +++V+GEA+DG  A+ +   +RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLAATARLTALPD--APRVIMLTTYDLDESLYAALRAGASGFLLKDVRPGDLAEAIRVVA  120
            G++ATA L A PD  A R+++LTT+D DE + AALRAGA GFL K   +  L  A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  RGEallaptatrrllDRFVAADMTPPGADV--RLDRLTAREREVLELLGRGASNAEIATR  178
            +G++ L++ A++ ++  +   + ++ + ++  R   LT RE +V+   +RG  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LTVTEATVKTHVSAVLRKLDVRDRVQAVVLAYDLGVV  215
            L ++ ATVKTH++  + KL+ RDR Q V +A+  G+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

705) O3I_029550 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 95/206 (47%), Positives = 140/206 (68%), Gaps = 5/206 (2%)

Query  3    IRVLIADDHAAIRAGLRMILDAEDDIevvgeaadgdvavSQAKALRPHVVLMDVRMPGVD  62
            I V++ DD+A IRAGLR IL+ + +I V+GEAADG  A +  ++ RP+VVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GITATERVTAD---GLAKVLILTTFDLDEYVFRTLRAGASGFVLKSSSGQALIDAVRTVA  119
            G+ AT  + AD      ++L+LTTFD DE V+ +LRAGA GF+ KS+ +++LI AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDGVLAPEVTRAVISAFAAVNPDAAQPEPDG-LADLTEREREVLDCLGDGLSNAQIAGK  178
             GD  L++  +++V+S +      A++ E  +  A LT+RE +V+   + GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFIGETTVKTHVSRVLTKLGVRSRVQ  204
            LFI+ +TVKTH++R +TKL  R R Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

706) MTES_1795 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 99/217 (46%), Positives = 148/217 (69%), Gaps = 5/217 (2%)

Query  6    VLLVDDHAMMRAGFRTILSLEDDITVVGEAATGREAISAAAELRPDVICMDVQMPDMDGL  65
            V+LVDD+AM+RAG+R IL  + +I V+GEAA GR A++     RPDV+ MD++MP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  66   EATRLLTADPDSDAA-ILIVTTFDRDDYlfaalsagasgfllKNAGPEELVSAVRIVGAG  124
             AT  L ADPD +A  IL++TTFD D+ ++AAL AGA GFL K+A++E L++AV  V+ G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  DALLAPEVTRRVIARFASGGAPEPAASVRPPLSLAEPLTERESEVLKLVAEALSNAEIAA  184
            D+ L++  ++ V++ +   G +     +   ++ +  LT+RE++V+   A +L N  IA 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVEL---IARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  185  RLFIGEATVKTHVSNVLQKLGARDRVQAVVLAHRHGL  221
             LFI+ ATVKTH++  + KL ARDR Q V +A R GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

707) Asphe3_39540 in NC_015145


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 96/219 (44%), Positives = 142/219 (65%), Gaps = 5/219 (2%)

Query  7    INVLLVDDQPLLRMGFRLILEGEEDLSIAGEASDGAEAVRLARELNPDVVLMDVRMPVLD  66
            I+V+LVDDQ+++R G+R ILE + ++ + GEA+DG  A  + R   PDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   gieatra--iaaagssariiiLTTFDVDEYAFAGLQAGASAFLLKDVAPSELIQAVRVVA  124
            G+ AT A    +  ++ RI++LTTFD DE  +A+L+AGA +FL K   +  LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGDAVVAPRVTQRLLETYVRGAELPVRpapapdplladlTPRETEMLEAMAEGLSNAEIA  184
             GD+ +++  ++ ++    R +  +        +  A LT RET+++ + A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT--DVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  185  HRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGLV  223
            +  F+S ATVKTH+ R +TKLH RDR Q V  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

708) Sros_0074 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 94/217 (44%), Positives = 138/217 (64%), Gaps = 14/217 (6%)

Query  3    VRLVIVDDHPVVRDGLRGMFVEQADLEVVGEAEDGERGLAVALRERPDVVLTDLRMPGLG  62
            + +V+VDD++++R GLRG++ E+A++ V+GEA DG  ++AV    RPDVVL DLRMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GAKFIGLL--AERVPSARVLVLTTYDGDDDVLPALTAGAIGYLLKDSPreevfravraaa  120
            G    + L     + + R+LVLTT+DGD++VL+AL AGA G+L K +  E ++ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  LGETVLSP----AVAARLLNRVRTPAPAE-------LSGRERTVLALVARGSTNKEAAAA  169
             G+T LS+    +V + L  R R+++  E       L+ RE  V+   ARG  N   A  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  170  LFISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL  206
            LFIS +TVKTHL +  TKL   DR+  V++A+  GL+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

709) Amir_2010 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 131/195 (68%), Gaps = 5/195 (2%)

Query  15   RGGIRLILESDPDLRVVAEAPDGSDVLDLVERHRPDVVLTDVQMPGVDGLEVVRRVTALP  74
            R+G+R ILE D+++RV++EA+DG   + ++   RPDVVL D++MP +DG+     + A P
Sbjct  14   RAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  75   DAPAV--VVLTTFDLDEYVHSALRGGATGFLLKDTPPRDLVRAVHVVARGEAMISPGVTR  132
            D  AV  +VLTTFD DE V +ALR+GA GFL K + +  L+ AV+ VA+G++ +S+G ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  133  RLLLEF--AAEPDGRTEARRRLSGLTPREREVAEAVGRGASNAGIARELFLSESTVKVHI  190
             ++ ++   + +    E   R + LT RE +V  + +RG  N +IAR+LF+S +TVK H+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  191  GRIMAKLDAANRTQV  205
             R M+KL+A +R Q+
Sbjct  193  NRAMTKLHARDRGQL  207

710) KTR9_3279 in NC_018581


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 142/219 (65%), Gaps = 10/219 (4%)

Query  3    ITVVIADDQAMVRQGFSALLAAQPDLSVLGDAADGVEAVEVCRRVRPDVVLMDVRMPRKD  62
            I VV+ DDQAM+R G+ ++L  ++++ V+G+AADG  A  V R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLWAAEQILASSSEPPTRVLMLTTFDIDDYVYEALRIGASGFLLKDAPadelvravrvva  122
            G+ A+  + A +   + R+L+LTTFD D+ V  ALR GA GFL K A ++ L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  ageallaPSITRRLITEVTANRRRPSRDDKLD------TLTPREREVLDLVADGKSNAEI  176
             G++ L+++ ++ +++++   RRR      ++      TLT RE +V+   A G  N  I
Sbjct  121  KGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  177  GADLFVTEQTVKTHVSSLLNKLRLRDRAQAVVFAYENGI  215
            + DLF++  TVKTH++  + KL+ RDR+Q V +A+ +G+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

711) MycrhN_3651 in NC_016604


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (406),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 132/216 (62%), Gaps = 14/216 (6%)

Query  7    VLLVDDHPVVREGLRGMIDAEADLTVVGEAGSGAEAITMAESLCPDVVLMDLRMPDVDGV  66
            V+LVDD++++R GLRG+++ +A++ V+GEA+ G  A+++  +  PDVVLMDLRMP +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   TATE--RILAVLPETRIVVVTTYESDTDILRAVEAGATGYLLKDVSRTQLADAVRDAARG  124
             AT   R  + L   RI+V+TT+++D ++L A+ AGA G+L K      L  AV   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  KTVLAPAVADRLVRFVRQ-----------PVPAALSTREVEVLGLVATGRTNAEIGRELH  173
             T L+++ A  +V  +R+           +  A+L+ RE +V+   A G  N  I+R+L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  174  ISEATVKTHLLRTFNKLGVSDRTAAVTTAMSMNLLT  209
            IS ATVKTHL R+  KL   DR   V+ A    L+ 
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

712) Snas_5262 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 145/221 (66%), Gaps = 8/221 (3%)

Query  1    MADDEAMIRAGVRAILASDPDIEVVAEAADGREAVEAVRKHRPDMALLDIRMPKMDGLSA  60
            + DD+AMIRAG+R+IL  D++I V++EAADGR A   +R  RPD+ L+D+RMP +DG++A
Sbjct  6    LVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGA  64

Query  61   AAEIRRIAPEVG---VIILTTFGEDEYIARALGDGASGFLLKSGDPRELiagihavaaga  117
            +A + R  P++    +++LTTF+ DE +  AL  GA GFL KS+D+  LIA+++AVA G 
Sbjct  65   TAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  118  aFLSPQVAQRVIAELARGSGGGKLSRAATARTKIDKLTDREREVLALVGAGCSNAEIAKR  177
            + LS+  A+ V+++L R    G+ +      ++   LT+RE +V+   + G  N  IA+ 
Sbjct  124  TSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LHVVEGTVKAYVSAILTRLEVRNRVQAAIIAYEAGLVTDDE  218
            L +  +TVK+ ++  +T+L+ R+R Q   IA+ +GLV   E
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

713) MODMU_3752 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 100/219 (46%), Positives = 152/219 (70%), Gaps = 3/219 (1%)

Query  8    VRVLVCDDQALVRGGYVTILGADPCLevvgeaadggaavTLAQELRPDVVVMDIRMPVLD  67
            + V++ DDQA++R+G   IL  D+ + V+GEAADG +A ++ +  RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLAGPGVAEPVKVLVVTTFHLDEYVYEALRAGASGFLLKDARPAELVAAVRTVA  127
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+AAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  AGEALLAPAVTRGLVGHFGDRVRapapaeevlpaaiaalTPREVEVLRLVAAGLSNAEIA  187
             G++ L+++ ++ +V+++  R R+ ++++  L A  A+LT RE +V+   A GL N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  188  TELVLSPETVKTFVSRILTKLSLRDRVQAVVLAHRIGLV  226
             +L +SP TVKT ++R +TKL  RDR Q V +A R GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

714) Ndas_0346 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 142/220 (65%), Gaps = 16/220 (7%)

Query  1    MIRVLLVDDHPVVREGIRGMLAAEADLTVVGEAASGPEA--VVRTAELEPDVVLMDLRMP  58
            MI V+LVDD++++R G+RG+L  +A++ V+GEAA G  A  V+R +   PDVVLMDLRMP
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMP  57

Query  59   GGDGVEATG--RISAERPGAHVLVLTTYDTDADILRAVEAGATGYLLKDTPraelaeavr  116
              DGV AT+  R  ++  + ++LVLTT+D D ++L A+ AGA G+L K +    L  AV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  117  aaargeTVLTGRLAGRLFTGMRRRGEPA---------AVLSPREVEVLRLASEGRTNAAI  167
            A A+G+T L++  A  + +++RRRG +A         A L+ RE +V+  A+ G  N +I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  168  GRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL  207
            +R L ISP+TVKTHL R   KL   DR   VS A+R GL+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

715) ACPL_3849 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 142/218 (66%), Gaps = 10/218 (4%)

Query  3    VRVLLVDDQPLIRAALQMVISEAPDLevvgeagnggeavRLAAELRPDLVVMDLRMPGMD  62
            + V+LVDDQ++IRA+L+ ++ +A ++ V+GEA++G  A  +    RPD+V+MDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRIAGQT-----RVLVLTTFDDDENVHRALRAGASGFLVKDMALDDILDAVRVVA  117
            G+ AT  + ++      R+LVLTTFD+DE+V  ALRAGA GFL K    + ++ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  118  AGDALLAPGVTRRLLQEFa----rrpavaaprapEGLTDREVEVLAEVGRGRSNPEIAAD  173
             GD+ L++G ++ ++ ++         V        LT+RE +V+   +RG  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  174  LHITVATVKTYVSRLLAKLGARDRIQLVIIAYDAGLVT  211
            L I+ ATVKT ++R ++KL ARDR QLV IA+ +GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

716) Caci_6705 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 107/249 (43%), Positives = 146/249 (59%), Gaps = 32/249 (12%)

Query  1    MVKVLIVDDQVLIRAGMAAILRAAPGYEVVGEACDGVEAVTMAALTEPDVVLMDIRMPDM  60
            M+ V++VDDQ +IRAG+ +IL   +G  V+GEA DG  A ++   + PDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATRAILGSGRENLPRILILTTFDMDQYVYEALRAGADGFVLKDTPPERLLAALKAV  120
            DG++AT A+ +    N  RIL+LTTFD D+ V  ALRAGADGF+ K + +E L+AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ADGDTLFSSTVTRRLVQAYVTATgldgepqgpgpgpgpgpvatpapglvpRSRRPDGPss  180
            A GDT +S+  ++ +V                                  R R   +   
Sbjct  120  AKGDTSLSAGAAKTVVSDL-------------------------------RRRGRSATDV  148

Query  181  aeraalaalttreTDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAV  240
               A  A+LT RETDV+   A GL N  IA  L +S +TVKTHLNRAM+KL+   R+Q V
Sbjct  149  ELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLV  208

Query  241  VLAYESGLV  249
             +A+ SGLV
Sbjct  209  SIAFRSGLV  217

717) Celf_3679 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 94/225 (42%), Positives = 144/225 (64%), Gaps = 11/225 (4%)

Query  1    MTRVLLADDHAAIRAGLRLLLEQGGIEVVGEAADGQAAITNARALRPDVVLMDVRMPGVD  60
            M  V+L DD+A IRAGLR +LE++GI V+GEAADG++A++  R+ RPDVVLMD+RMP +D
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GIEATRVITRE-GLADV--VALTTFDLDEYVLGMLRAGAVGFLLKTTGAAALVDAVQRVA  117
            G+ AT  +  + +L  V  + LTTFD DE VL+ LRAGA GFL K++++ +L+ AV+ VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  118  AGDGVLAPEVTRRlladlvaaapaadtptaapgaggvhaaavaSLTARERDVLACLGAGM  177
             GD  L++  ++        +  +     + ++++    A  A+LT RE DV+   + G+
Sbjct  121  KGDTSLSAGAAK--------TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  178  SNAELADALVITEATAKTHVSRVLAKLGCASRVQAAIVAVEAGVV  222
             N  +A  L I+ AT KTH++R ++KL    R Q   +A  +G+V
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

718) Kfla_2450 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 73/174 (42%), Positives = 118/174 (68%), Gaps = 10/174 (5%)

Query  48   STRPDVVLMDLRMPRRDGVSATGAIVSGH--PATKVLVLTTYDTDSDILHAVEAGAAGYL  105
            ++RPDVVLMDLRMP  DGV+AT+A+ ++    A ++LVLTT+D D ++L A+ AGA G+L
Sbjct  44   GSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFL  103

Query  106  LKDTPHAELLDGIRAASRGETVLAPPVAARLMSRLRTPA-APAAVQP-------SPRELE  157
             K +    L+ ++ A ++G+T L++  A  ++S LR  + +++ V+        + RE +
Sbjct  104  AKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETD  163

Query  158  VLAAVARGLSNAEIGRELFIGEATVKTHLQRLFSKLDVDDRTRAVTVAIERGLL  211
            V+ + ARGL N  I+R+LFI+ ATVKTHL+R  +KL+  DR + V++A+  GL+
Sbjct  164  VVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

719) Snas_3639 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (404),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 142/208 (69%), Gaps = 7/208 (3%)

Query  3    IRVLIADDQPIVRTGLTMLLDAQPDIEVVGAAADGREAVRLALQLRPDVGLFDIRMPLMD  62
            I V++ DDQ+++R+GL  +L+ +++I V+G AADGR A  +    RPDV L D+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRL-AGPDVTDPLPIVVITTFDLDEYVHEALKAGARGFLLKDAGPALLTQAIHAA  121
            G+ AT  L A+PD+ +++ I+V+TTFD DE V  AL+AGA GFL K A++  L  A++A 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ADGNALIAPSVTVRLIAAF-AQTHTSPPPQPIER---LTAREEEVLVSVAQGRTNNEIAS  177
            A G++ ++++ +  +++ +  + +++   + I R   LT RE +V+++ A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELYITQSTVKAHLASLMRKLGARNRVEV  205
            +L+I+ +TVK+HL   M KL AR+R ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

720) Gbro_2730 in NC_013441


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  111 bits (403),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 146/216 (68%), Gaps = 8/216 (3%)

Query  5    IMLVDDDPLVRSglrlllggDAELSIVAEAADGQEALERQSADPVDMVLMDLRMPRMDGI  64
            ++LVDD++++R+GLR +L  DA + +++EAADG+ A+    +   D+VLMDLRMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AATAALKQLAD--PPNVIVLTTFDADDYVVRALAVGADGFLLKDTPPDEIVHAIKSVLAG  122
            +ATAAL+  +D  +  ++VLTTFD+D+ V+ AL  GADGFL K + ++ ++ A+ +V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  RPALSPSVTAALIKQVVDGGGVRSAQAAQ---RAESLTERERDVAVELARGASNAEIAER  179
              +LS++ + +++ ++   G  RSA   +   R+ +LT+RE DV +  ARG  N  IA  
Sbjct  123  DTSLSAGAAKTVVSDLRRRG--RSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LYMSLATVKAHISHIFTKLDATNRVQVAICMHDAGL  215
            L++S ATVK+H+++  TKL+A +R Q+      +GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

721) ACPL_1915 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 147/222 (67%), Gaps = 8/222 (3%)

Query  1    MIKVLIADDQAMVRQGFGALLAAQPdvlvvgdaadgaaavtaaRELNPDVVLMDIRMPVM  60
            MI V++ DDQAM+R G+ ++L  ++++ V+G+AADG +A +  R   PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRLAGGP-----RILILTTFDLDDYVYEALRAGASGFLLKDAPAADLVQAVRVV  115
            DG+ AT  L ++P     RIL+LTTFD D+ V  ALRAGA GFL K A +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  AAGEALLAPSVTRRLIadfaarpradrprpVA--LNALTPRETEVLRLIARGRSNQEIAA  173
            A G++ L+++ ++ +++D+  R R+     +     +LT RET+V+   ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  DLVVAEQTVKTHVGRILMKLALRDRAQAVVFAYETGLVAAGE  215
            DL ++  TVKTH+ R + KL  RDR+Q V +A+ +GLV  +E
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

722) B737_1272 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 4/219 (1%)

Query  1    MIKVVLADDEAMMRAGVAAILAADPGIEVVAEAADGRSAVSQVLATRPDVVLLDIRMPGL  60
            MI VVL DD+AM+RAG+ +IL  D+GI V++EAADGRSA + + ++RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGAAAEIR--RLLPATGVIMLTTFGEDEYIERalglgaggfllKSGDPRELLSGIHAV  118
            DG+GA+A +R    L A  +++LTTF+ DE +  AL  GA+GFL KS+D+  L+++++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGAAFLSPKVAQRVIARL-SGGQLaraaaareriaaLTPREREVLTLLGSGLSNADIAA  177
            A G + LS+  A+ V++ L   G+ A       R A+LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGLVG  216
             +F+  +TVK+H++  + +L A++R Q    A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

723) RAM_06485 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 4/219 (1%)

Query  1    MIKVVLADDEAMMRAGVAAILAADPGIEVVAEAADGRSAVSQVLATRPDVVLLDIRMPGL  60
            MI VVL DD+AM+RAG+ +IL  D+GI V++EAADGRSA + + ++RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGAAAEIR--RLLPATGVIMLTTFGEDEYIERalglgaggfllKSGDPRELLSGIHAV  118
            DG+GA+A +R    L A  +++LTTF+ DE +  AL  GA+GFL KS+D+  L+++++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGAAFLSPKVAQRVIARL-SGGQLaraaaareriaaLTPREREVLTLLGSGLSNADIAA  177
            A G + LS+  A+ V++ L   G+ A       R A+LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGLVG  216
             +F+  +TVK+H++  + +L A++R Q    A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

724) AMES_1271 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 4/219 (1%)

Query  1    MIKVVLADDEAMMRAGVAAILAADPGIEVVAEAADGRSAVSQVLATRPDVVLLDIRMPGL  60
            MI VVL DD+AM+RAG+ +IL  D+GI V++EAADGRSA + + ++RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGAAAEIR--RLLPATGVIMLTTFGEDEYIERalglgaggfllKSGDPRELLSGIHAV  118
            DG+GA+A +R    L A  +++LTTF+ DE +  AL  GA+GFL KS+D+  L+++++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGAAFLSPKVAQRVIARL-SGGQLaraaaareriaaLTPREREVLTLLGSGLSNADIAA  177
            A G + LS+  A+ V++ L   G+ A       R A+LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGLVG  216
             +F+  +TVK+H++  + +L A++R Q    A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

725) AMED_1278 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 149/219 (69%), Gaps = 4/219 (1%)

Query  1    MIKVVLADDEAMMRAGVAAILAADPGIEVVAEAADGRSAVSQVLATRPDVVLLDIRMPGL  60
            MI VVL DD+AM+RAG+ +IL  D+GI V++EAADGRSA + + ++RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGAAAEIR--RLLPATGVIMLTTFGEDEYIERalglgaggfllKSGDPRELLSGIHAV  118
            DG+GA+A +R    L A  +++LTTF+ DE +  AL  GA+GFL KS+D+  L+++++AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGAAFLSPKVAQRVIARL-SGGQLaraaaareriaaLTPREREVLTLLGSGLSNADIAA  177
            A G + LS+  A+ V++ L   G+ A       R A+LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  KMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGLVG  216
             +F+  +TVK+H++  + +L A++R Q    A+ +GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

726) Mesil_1051 in NC_014212


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 139/215 (65%), Gaps = 14/215 (6%)

Query  6    ILIADDHPIVRAGLVGLLSTQEGFQVVGEASSGLEAVQMADALRPNVVLMDLRMPGMGGT  65
            +++ DD++++RAGL G+L  + G++V+GEA+ G  A  +  + RP+VVLMDLRMP ++G 
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  66   AATRAIRSR--FPEVQVLVLTTYDTDTEIVRAIEAGAIGYLLKDVPREELYKAIYASAHG  123
            +AT A+R+   +  V++LVLTT+D D E++ A+ AGA G+L K    E L  A+ A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  ESVLSPPVAARLLG----RMRAPSD-------ESLSTRELEVLSLVAKGLSNKEIARELK  172
            ++ LS+  A  +++    R R+++D        +L+ RE +V+   A+GL N  IAR+L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  173  ISEATVKTHLLHTFGKLGVDDRTAAVTVALERGIL  207
            IS ATVKTHL ++  KL   DR   V++A+  G++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

727) Mlut_21900 in NC_012803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 155/223 (70%), Gaps = 8/223 (3%)

Query  9    VRVALVDDQALIRSGLAMLVDSQPDLTVVAEagsgreavasvsvagadvvLMDVRMPEMD  68
            + V LVDDQA+IR+GL  +++ ++++ V++EA+ GR A A +  + +DVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GIEATRALLRRPD--APRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAAIRTVH  126
            G+ AT AL   PD  A R++VLTTFD DE  + A+ AGA GFL K A +E L+AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  RGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAANL  186
            +GD+ +++++++ +++++  R      RSA   E  A  A+LT RE +V++  A+G  N+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR-----GRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  187  EIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLVQ  229
             IA +L +S ATVKTH+ R ++KL ARDR Q V IA R+GLV+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

728) SCATT_26700 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 146/218 (67%), Gaps = 6/218 (2%)

Query  3    IRVLIADDQTMIRESFAILLNAQPDIevvgeagdgeeavravaeLGPDVVLMDIRMPRLD  62
            I V++ DDQ+MIR ++  +L+ +++I V+GEA+DG  A   +    PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRITGDGD-AAAKVLVLTTFDLDEYVYEALRAGASGFLLKTSSAHQLADAVRTVH  121
            G+ AT  + +D D  A ++LVLTTFD DE V  ALRAGA GFL K++ ++ L  AV +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  EGGALLAPTVTRRLIQEFSRLGGKPAPRRE---RVGDLTERETQVLCLIAQGLSNLEIAG  178
             G++ L++  ++ ++ ++ R  G++A   E   R + LT+RET+V+   A+GL N+ IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELVISEQTVKTHVSRILIKLGLRDRTQAAVFAYETGLV  216
            +L IS  TVKTH++R + KL  RDR Q   +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

729) liaR in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 146/218 (67%), Gaps = 6/218 (2%)

Query  3    IRVLIADDQTMIRESFAILLNAQPDIevvgeagdgeeavravaeLGPDVVLMDIRMPRLD  62
            I V++ DDQ+MIR ++  +L+ +++I V+GEA+DG  A   +    PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRRITGDGD-AAAKVLVLTTFDLDEYVYEALRAGASGFLLKTSSAHQLADAVRTVH  121
            G+ AT  + +D D  A ++LVLTTFD DE V  ALRAGA GFL K++ ++ L  AV +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  EGGALLAPTVTRRLIQEFSRLGGKPAPRRE---RVGDLTERETQVLCLIAQGLSNLEIAG  178
             G++ L++  ++ ++ ++ R  G++A   E   R + LT+RET+V+   A+GL N+ IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ELVISEQTVKTHVSRILIKLGLRDRTQAAVFAYETGLV  216
            +L IS  TVKTH++R + KL  RDR Q   +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

730) Dgeo_2486 in NC_008010


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 134/206 (66%), Gaps = 12/206 (5%)

Query  3    ITLALVDDQPLMRFGLSSLFETDDDFEVVGEAGNGADAVRLVQDLRPDVVLMDVQMPELD  62
            I + LVDDQ+++R GL +++E D ++ V+GEA++G  A  ++++ RPDVVLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVRATARIR-ELGLPS-RVLILTTFDTEGYVLDGIRAGASGYLLKDMRPTELFDVVRRVA  120
            GV ATA +R + +L + R+L+LTTFD +  VL ++RAGA G+L K   +  L+  V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGELFIQPSVASKYLHLLTTRQLGAEH---------LSPREEDVLRLLARGLSNKAIARD  171
             G+  + ++ A   +  L  R  +A +         L+ RE DV+   ARGL N +IARD
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  172  LAISESTVKNHVKSILAKMQVRNRTE  197
            L IS +TVK H++  ++K++ R+R +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

731) AMIS_39230 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (400),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 116/171 (68%), Gaps = 3/171 (1%)

Query  37   PDVILMDVRMPGVDGLTATARLTAGP--NPPRVLVLTTFHQDAYVFQALRAGASGFLLKD  94
            PDV+LMD+RMP +DG+ ATA L A+P  N+ R+LVLTTF+ D  V+ ALRAGA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  95   SEPAELVAGIRTVAAGEAMLSPAVTRRLIDAF-ATGAVAETPEPDPRLGALTPRERDVLA  153
            +++  L+A++ +VA G++ LS++ ++ ++  +   G  A   E  +R ++LT RE DV+ 
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  154  GIARGRSNAEIGEELGIGVGTVKTHVNALLAKLGVRDRVQATIVAYDVGLV  204
            G ARG  N  I+ +L I+ +TVKTH+N  ++KL  RDR Q   +A+  GLV
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

732) Cwoe_0615 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (400),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 90/222 (41%), Positives = 144/222 (65%), Gaps = 16/222 (7%)

Query  5    VSLLIVDDHPVVRDGLRGMFNGDERFDVLGEAGDGAEAVERAQALSPDVVLMDLRMPGTD  64
            + +++VDD++++R GLRG+++ D  + V+GEA+DG  A    ++  PDVVLMDLRMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GV---TAIRQLAEIAPHVHVLVLTTYDTDAEVLPAIEAGATGYLLKDAPRDELLRAVSAA  121
            GV   +A+R  +++ + V++LVLTT+D D EVL+A+ AGA G+L K A  + L+ AV A 
Sbjct  61   GVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ARGEAVLAPSVATRLLGRVR-----APDGE------PVTDREREVLALVAQGATNREAAR  170
            A+G++ L+++ A  +++ +R     A D E       +T+RE +V+   A+G  N   AR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  RLFISEATIKTHLLHVYAKLGVNDRaaavaaaYDRGLLRPGD  212
             LFIS AT+KTHL +  +KL   DR+  V+ A+  GL+  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

733) O159_15460 in NC_022438


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (400),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 151/219 (69%), Gaps = 6/219 (2%)

Query  9    ILLADDQALVRLGFRMVLEAEPDLCvvgeavdgveavRLAAQTRPDVILMDVRMPALDGI  68
            ++L DDQA++R G+R +LE ++++ V+GEA DG  A  +   +RPDV+LMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  69   EATRRIVAANPE---ARIIILTTFDLDEYAFGGLRAGASGFLLKDARPDDLTaairavaa  125
             AT   + A+P+    RI++LTTFD DE  +++LRAGA GFL K A ++ L AA+ AVA 
Sbjct  63   GATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  126  gdaaVSGRVTRAMLELFADRLPTTESAAPGDDPAAALTPREREILLAIADGLTNGEIGAT  185
            GD+++S+  +++++  +  R   + +       +A+LT RE +++L+ A GL N  I+  
Sbjct  122  GDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  FYLTESTVKTHVGRVLSKLHLRDRVHAVIFAYDNGLVDR  224
            ++++ +TVKTH+ R ++KLH RDR + V +A+ +GLV+R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

734) O3I_032545 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 92/215 (43%), Positives = 136/215 (64%), Gaps = 6/215 (2%)

Query  5    VLVVDDQDLFRAAFSLILDADPGITVVGEAADGLEAIDKADSLAPDVVVMDVRMPRLDGV  64
            V++VDDQ ++RA++  IL+ D+GI V+GEAADG  A+    +  PDVV+MD+RMP LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AAT---RRICARTSAKVLVLTMFDLDEYVYDALQAGASGFLLKDLRREELIDAVRVVNAG  121
            +AT   R      + ++LVLT FD DE V  AL+AGA GFL K    E LI AV  V  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  122  EALLAPTVTRRLIAELSHRGSPRPeltrrldeltererdtlre--lARGLSNAELAAALT  179
            ++ L++  ++ ++++L +RG +  ++       T  +R+T      ARGL N  +A  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  VSEHTVKTHVSSVLSKLGLRDRAQAVVFAYEAGLV  214
            +S  TVKTH++  ++KL  RDR+Q V +A+ +GLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

735) Namu_0544 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 140/208 (68%), Gaps = 7/208 (3%)

Query  3    IRVLIADDQPIVRTGLTMLLDAQPGIDVVGAAADGREAVRLALQLRPDVGLFDIRMPLMD  62
            I V++ DDQ+++R+GL  +L+ ++GI V+G AADGR A  +    RPDV L D+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLL-AGPDVTDPLPIVVITTFDLDEYVHGALKAGARGFLLKDAGPALLTQAIHAA  121
            G+ AT  L A+PD+ +++ I+V+TTFD DE V +AL+AGA GFL K A++  L  A++A 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ADGDALIAPSVTVRLLAAFAQAPTSPPRQPL----EPLTAREEEVLVTVAQGRTNSEIAS  177
            A GD+ ++++ +  +++ + +   S+    L      LT RE +V++  A+G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  QLFITSSTVKAHVASLMRKLGARNRVEV  205
            +LFI+++TVK+H+   M KL AR+R ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

736) Snas_0625 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (400),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 89/220 (41%), Positives = 142/220 (65%), Gaps = 8/220 (3%)

Query  3    ITVLLADDDPLARTGLRTLVSAQPDIDVIAEAADGTQVLPLVRRLRPDVVLMDVRMPDMD  62
            I V+L DD+++ R+GLR ++  +++I VI+EAADG   ++++R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLRRDLT-EPPKVVVITTFENDEYVFDALRAGANGFVLKRAPATEIAHAIRTVA  121
            G+ AT  LR D   ++ +++V+TTF+ DE V+ ALRAGA+GF+ K A +  +  A+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  SGDALLFpeairalaaa------rpappgnphgpiaLTAREAEVLRLMATGLSNQDIATH  175
             GD+ L + A +++ +        ++         +LT RE++V+   A GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  176  LTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGFVTPG  215
            L +S  T+KTH+   +TKL A +R Q V IA+ SG+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

737) HMPREF9154_0526 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 99/217 (46%), Positives = 143/217 (66%), Gaps = 4/217 (1%)

Query  1    MIRVVLVDDQAVVRAGFRVLLEEHGDIavvgeaaggreavavvareHPDVVCMDLRMPAG  60
            MI VVLVDDQA++RAG+R +LE+ G I V+GEAA+GR A AV+   +PDVV MDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATRQIVASRQDGSPAVLVVTTFDLDADVFGALEAGADGFILKDCEPEELVDAVRRL  120
            DG+ AT  + A  +  +  +LV+TTFD D +V++AL AGADGF+ K  ++E L+ AV  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGYGLVDHTVTRRVIAEFARRHAPAGNTTEIRK---LTARELEIVKLLAAGMSNAEIAT  177
            A G   +    ++ V++++ RR  +A +   I +   LT RE ++V   A G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELVVETSTVKSHLTRILPKIGARDRVQVVVWAHRNGL  214
            +L +  +TVK+HL R + K+ ARDR Q+V  A R+GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

738) AORI_2759 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 148/219 (68%), Gaps = 8/219 (3%)

Query  5    VLIVDDEPLLRAGLRSLLDNQPDLTvvgeagdggevvdLVRRTHPEVVLMDVRMPGVDGI  64
            V++VDD++++RAGLR++L++ +++ V+GEA+DG     ++R ++P+VVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRRLLAEIP-DPPKVLVITTFDNDDYVYDALLAGASGFLLKRARKEEFAHAIRTIAAG  123
             AT  L A+   ++ ++LV+TTFD D+ V  AL AGA GFL K A  E +  A+ ++A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  ETLLFPDAIRRMVT-----ARPAPS-GLAPRPSSLTKRETEVLRLIATGKSNVDIAAELV  177
            +T L ++A + +V+     +R+A    L +R ++LT RET+V+   A G  NV IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  178  ISLETVKTHVGNIFGKLGAANRSQAVVFAYETGIVAPGH  216
            IS  TVKTH+     KL A +R+Q V +A+ +G+V  ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

739) SGR_204 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 86/206 (42%), Positives = 131/206 (64%), Gaps = 14/206 (6%)

Query  13   ILVADDHTVMRAGVVALLADEPTIDIVGEAEDGRAAVALTERLEPDVVLMDLRMPVLDGT  72
            +++ DD++++RAG+ ++L +++ I ++GEA DGR+A A+     PDVVLMDLRMP+LDG 
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  73   SATARIVAGP--SRTRVLILTTYETDAEIERAVEAGAIGYLLKDATRDQLVEAVHSAARG  130
            +ATA + A+P  +  R+L+LTT++ D E+  A+ AGA G+L K A  + L+ AV++ A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  131  ETvlaprvaar-----------lvarmrrpapvTLTPREVDVLGAVADGLSNVEIGRRLV  179
            +T L++  A                    +   TLT RE DV+ + A GL NV I+R L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  IAEATVKTHLLRVFAKLDVADRTHAV  205
            I+ ATVKTHL R  +KL+  DR + V
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLV  208

740) SBI_02254 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 89/220 (41%), Positives = 139/220 (64%), Gaps = 12/220 (5%)

Query  3    IRVVVADDQELVRAGFAMILAAQPGIEVVAESGDGFEAVGAARAHRPDVVLLDIRMPGMD  62
            I VV+ DDQ ++RAG+  IL  ++GI V++E++DG  A +  R+ RPDVVL+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEAARIICAE---TACRVIMLTTFGQDGYLFDALRAGASGFLLKDVRRDDLVHAVRMVA  119
            G+ A+  + A+    A R+++LTTF+ D  ++ ALRAGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDSLLAPSVTRTLIAAF-----TSGAVVPPPRTERLDVltareretlrllGCGLSNAEI  174
             GD+ L+++ ++T+++ +     ++  V   +RT  L   T RE + +   + GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATL---THRETDVVLGAARGLDNVSI  177

Query  175  AAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV  214
            A  L +S  TVKTH++  +TKL  RDR Q V  A+ +G+V
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

741) Celf_1092 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 108/226 (48%), Positives = 151/226 (67%), Gaps = 15/226 (6%)

Query  1    MIRVLLVDDQALIRMGFRLLIDSTDDLEVVGEAQDGQSAIEQVAALRPDVVLMDVRMPGV  60
            MI V+LVDDQA+IR G+R +++ ++ + V+GEA DG+SA+  + + RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   NGIDATA--RIVETHPATRVLVLTTFDLDEYAFAALRAGASGFllkdaapadlaaaVRTV  118
            +G++ATA  R      A R+LVLTTFD DE  +AALRAGA GFL K A +  L AAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPH----PRLAGLTPREVEVLREVAEG  174
            A G++ +SA  ++ ++     +L      RGR A +    +R A LT RE +V+   A G
Sbjct  120  AKGDTSLSAGAAKTVVS----DLR----RRGRSATDVELIARTATLTHRETDVVLGAARG  171

Query  175  LSNGEIADRLFLSEATVKTHVGRILAKLrvrdrvqavvvaYETGLV  220
            L N  IA  LF+S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV
Sbjct  172  LDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

742) Tpau_0647 in NC_014158


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 151/218 (70%), Gaps = 7/218 (3%)

Query  1    MIRVGVVDDQAMFRSGLSMLIDSQADMENIGEAADGVEACALVRDKRPQVLLMDVRMPNI  60
            MI V +VDDQAM+R+GL  +++ +A++  IGEAADG  A A++R+ RP+V+LMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATAQIMTEPDPPA--IIMLTTFDHDeavarameagaagFLLKESQPQFVLAAIRDv  118
            DG+ ATA + ++PD  A  I++LTTFD DE V  A+ AGA GFL K ++++ ++AA+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aagnmvvaasaaRHLFAHPRPSTAPHRPVEF----GRLTEREQQIFVRAAEGLSNAEIAE  174
            A G+  ++A+AA+ + ++ R    +   VE+    + LT+RE ++ + AA GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  KEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV  212
              F++ +TVKTH++R +TKL  RDR QLV  A R GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

743) Isova_0847 in NC_015588


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 140/219 (64%), Gaps = 9/219 (4%)

Query  1    MTRVLIVDDDPMVRRLLTAVLRGQGIDVVGEATDGDEVPAAVDAHRPDVVLMDLHMRRVG  60
            M  V++VDD++M+R  L ++L + GI V+GEA+DG    A + + RPDVVLMDL+M  ++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GLDAIRALRRRTDPPAV--IALTSFGSDDTVVAALDAGAQGFLGKDDDPDRIANHVRQVa  118
            G++A  ALR   D  AV  + LT+F++D+ V+AAL AGA+GFL+K  D++ +   V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  agagaldhgaagaVIRHLEGGRRLDGRRA---EALARLEQLTDREREVASYLPHGLSNPE  175
             G  +L  GAA +V+ +L   RR  GR A   E +AR   LT+RE +V    ++GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLR--RR--GRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  176  IARLTFLADSTVKVHLSRAMNKLGLTSREQLAVLVDRAG  214
            IAR  F++ +TVK HL+RAM KL    R QL  +  R+G
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

744) Tfu_1403 in NC_007333


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 93/210 (45%), Positives = 141/210 (68%), Gaps = 11/210 (5%)

Query  1    MVRVVVAEDQAAVRAGLVMILETDPGITVVAEAADGQEAVDTCLRLRPDVALMDVRMPRR  60
            M+ VV+ +DQA +RAGL  ILE D+GI V++EAADG+ A       RPDV LMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGISATQELAA----AGIDVLVLTTFDLDEYVfgalragaagfllKDVEAADLLKAVHTV  116
            DG++AT  L A     ++ +LVLTTFD DE V++ALRAGA GFL K  ++  L+ AV++V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  ARGEGMIAPAVTRRLINEFAATRPREQEKADPAILER---LTPREREVLACIGEGLSNQQ  173
            A+G+  ++++ ++ +++++   R R +  +D  ++ R   LT RE +V+   + GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IARRLYITETTAKTHVSRILTKLDLRSRVQ  203
            IAR L+I+ +T KTH++R +TKL+ R R Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

745) Snas_3714 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 135/207 (66%), Gaps = 4/207 (1%)

Query  1    MIRTLIVDDDALVRLGLCDLLDDEPDITVVAQAADGKSAVAQAERHRVDVALMDVRMPGM  60
            MI  ++VDD+A++R GL ++L+D ++I V+++AADG+SA A     R DV LMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATARLRALPE--PAQVIALTTFDLDEYVYDMIAAGAAGFLLKDTDPGEIIRAIRVV  118
            DG++ATA LRA P+  + +++ LTTFD DE V   + AGA GFL K +D+  +I A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDAMLHPAAARRLIERYHRAARPRA-TAVRHRVDRLTPRETDVLRHLALGATNAEIAA  177
            A GD+ L ++AA+ ++   +R +R+ +   +  R   LT RETDV+   A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  SLSMRESTVKAHVTRILATLDVTNRVQ  204
             L +  +TVK+H+ R ++ L+  +R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

746) SC3D11.12 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 140/221 (64%), Gaps = 15/221 (6%)

Query  16   VISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAAGGTEAVERAAALDPDVVLMDLRMPGG  75
            +I +++VDD++++R GLRG++E A G+RV+GEAA+G  A     +  PDVVLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  76   SGVAAIRELTRRGARA----RVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDDLFTAVR  131
             GV+A   L  R+       R+LVLTT+D D + L+A+ AGA G+L K A  + L++AV 
Sbjct  60   DGVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  132  AAAQGRTvlspavasrlvsavrapKTPGAE--------PLSAREREVLALVARGTSNKEI  183
            A A+G T LS++ A  +VS +R    ++++         L+ RE +V+   ARG  N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  184  ARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGILG  224
            AR+LFIS ATVKTHL +  +KL   DR+  V+ A+  G++ 
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

747) SHJG_2716 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 143/219 (66%), Gaps = 7/219 (3%)

Query  1    MIRVLVVDDEALIRTGFQRILAAADDIEVVGAVSGGQ-ALRTVREKRPDVVLLDIRMPDV  59
            MI V++VDD+A+IR+G++ IL  A+ I V+G  ++G+ A+  +R  RPDVVL+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  60   DGLTVLGEIRRLREPPVVAM--LTTFDMDEYVETALRSGAAGFLLKDTDPEALPLAVQSL  117
            DG+   + +R   +   V +  LTTFD DE V +ALR+GA GFL K +D+E+L  AV+++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGGTVLSPKVTRTVVDGYLSAGAPERPPKALAR---LTGREREVLLLMAEGLSNAEIAS  174
            A+G+T LS+  ++TVV +    G +      +AR   LT RE +V+L  A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RMHLSTGTVKDHVSAILTKLEVSGRVQAALFAQRAGLLA  213
             + +S +TVK H++  +TKL+  +R Q   +A R+GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

748) SHJGH_2480 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 143/219 (66%), Gaps = 7/219 (3%)

Query  1    MIRVLVVDDEALIRTGFQRILAAADDIEVVGAVSGGQ-ALRTVREKRPDVVLLDIRMPDV  59
            MI V++VDD+A+IR+G++ IL  A+ I V+G  ++G+ A+  +R  RPDVVL+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  60   DGLTVLGEIRRLREPPVVAM--LTTFDMDEYVETALRSGAAGFLLKDTDPEALPLAVQSL  117
            DG+   + +R   +   V +  LTTFD DE V +ALR+GA GFL K +D+E+L  AV+++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGGTVLSPKVTRTVVDGYLSAGAPERPPKALAR---LTGREREVLLLMAEGLSNAEIAS  174
            A+G+T LS+  ++TVV +    G +      +AR   LT RE +V+L  A GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  RMHLSTGTVKDHVSAILTKLEVSGRVQAALFAQRAGLLA  213
             + +S +TVK H++  +TKL+  +R Q   +A R+GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

749) CMM_0404 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/223 (42%), Positives = 144/223 (65%), Gaps = 8/223 (3%)

Query  19   VRVLLVDDQALVRAGIRVILESEDgievvgeaadgeegvRLAAALAPDVICMDVQMPRVD  78
            + V+LVDDQA++RAG+R ILE  +   +   A +      + ++  PDV+ MD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGS-RPDVVLMDLRMPILD  60

Query  79   GLEATRRIVADPTIGAA-VLMLTTFDREDYLFTALDAGASGFVLKSASPESLVEAVHVIA  137
            G+ AT  + ADP + A  +L+LTTFD ++ +++AL AGA GF+ KSA +ESL+ AV+ +A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  138  RGDALLSPDVTRRVIERFGRGPADAASTAPIPTIPTDPRVATLTDRELEVLRLLAEGLAN  197
            +GD+ LS++ ++ V+  + R    A+    I      +R ATLT+RE +V+   A GL N
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI------ARTATLTHRETDVVLGAARGLDN  174

Query  198  AEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGIV  240
              IA  L+++ ATVKTH++R + KL  RDR Q V +A+  G+V
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

750) Namu_0608 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 138/203 (68%), Gaps = 5/203 (2%)

Query  24   EDDIEVVADLDGGVKAVEVVRLRRPDVVIADVRMPGMDGVELTRRIVEDPHRTGNPPKVL  83
            + +I V+++  +G  A  V+R  RPDVV+ D+RMP +DGV  T  +  DP+   N+ ++L
Sbjct  23   DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL--NAVRIL  80

Query  84   VLTTFHVDEAVYAALRAGATGFVLKDAAPTELvaavravaaGEAWLDPAVARQLIDEFA-  142
            VLTTF+ DE V AALRAGA GF+ K A +  L+AAV AVA G++ L ++ A+ ++ ++  
Sbjct  81   VLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRR  140

Query  143  -SHTPADLPGPSELQALTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKLG  201
             +++++D+   +   +LT RE +V++  A+GL N  I+ +L ++ +T KTH+NR   KL 
Sbjct  141  RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLH  200

Query  202  LRDRAQAVAMAYKSGLL-RPEDP  223
             RDR+Q V++A++SGL+ R+E+P
Sbjct  201  ARDRGQLVSIAFRSGLVNRAEHP  223

751) VAB18032_02010 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 93/223 (42%), Positives = 149/223 (67%), Gaps = 16/223 (7%)

Query  5    VRLLIVDDHPVVRDGLRGMFTGDPGFEVVgeaadgaealalaaRHRPDVVLMDLRMPGMD  64
            + +++VDD++++R GLRG++  D+G+ V+GEAADG  A+A+    RPDVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVTAIGRLVRSG---STAKVLVLTTYDTDADVLPAIEAGATGYLLKDAPRDELVRAVRAA  121
            GV A + L R++   ++ ++LVLTT+D D +VL+A+ AGA G+L K A  + L+ AV A 
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ARGESVLSPAVAGRLMGRL----RAPAE-------EPLSQRELEVLTLVARGSTNREAAA  170
            A+G++ LS++ A  +++ L    R++++         L++RE +V+   ARG  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  QLFISEATVKTHLLHVYAKLGVNDRaaavavaYDRGLLTPGGR  213
            +LFIS ATVKTHL +  +KL   DR+  V++A+  GL+  + +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

752) ACP_2113 in NC_012483


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 141/218 (65%), Gaps = 17/218 (7%)

Query  10   IRILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMN  69
            I +++VDD+ ++R GL ++L+  +G+ VI+EA+DG  A+A+ R  +PD+ +MDLR+P ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GVEAITRIREES--PGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAAIRSVH  127
            GV A + +R ++   + RI+VLTTFDGDE++  AL+AGA G+L K+ D++ L AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  AGKSRIP-----TVVAE-RLAERMS--------GSELTARELDVLRLIVQGRSNREIAAD  173
             G + ++     TVV++ R   R +         + LT RE DV+    +G  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  174  LHISEATVKTHINNLLSKLGVSDRTQAATTALQRGLVH  211
            L IS ATVKTH+N  ++KL   DR Q  + A++ GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

753) SCAB_18251 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (398),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 86/211 (41%), Positives = 143/211 (68%), Gaps = 3/211 (1%)

Query  27   RAGLTFMLGGADDIEIVGEAADGDEVDALVDRTRPDVVLMDIRMPTVDGLTATERLRTRA  86
            RAGL  +L +A+ I ++GEAADG    A++  +RPDVVLMD+RMP +DG+ AT  LR+ +
Sbjct  14   RAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  87   D--GPQVVVLTTFHADDQVLRALRAGAAGFVLKDTPpadivdavrrvaagdpvLSPAVTR  144
            D  + +++VLTTF++D++VL ALRAGA GF+ K + +  ++ AV  VA GD  LS++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  145  RLMAHAADGAPGTRHDTARARLAVLNDREREVAVAVGRGASNAEIAAELFLSVATVKTHV  204
             ++++    + ++ +    AR A L +RE +V ++ +RG  N  IA +LF+S ATVKTH+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  205  SRVLAKLGLNNRVQIALLTYDAGLPEDDGHS  235
            +R ++KL   +R Q+  +++ +GL +   H+
Sbjct  193  NRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

754) Tpau_1874 in NC_014158


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 106/216 (50%), Positives = 150/216 (70%), Gaps = 9/216 (4%)

Query  3    VTVVLADDHAAIRAGLRLLLESSGEVEVIGEAADGAAALRQAKALRPDVVIMDVRMPRVD  62
            + VVL DD+A IRAGLR +LE +G + VIGEAADG +A+   ++ RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATAHVVAETD---AAVLVLTTFDLDDYVlgalaagasgfllksaggDELIRGVQAVA  119
            G++ATA + A+ D     +LVLTTFD D+ VL+AL AGA GFL KSA+++ LI +V+AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDAVLDPKVTRAVITSLPAP-PTAVHPDL----SSLTGRERDVLAGLGAGLSNYQIARR  174
             GD+ L +  +++V++ L     +A + +L    ++LT RE DV+ G + GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LEIGEATVKTHVSRVLMKLGVQSRVQAAVIAAQSGL  210
            L I+ ATVKTH++R + KL  + R Q   IA +SGL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

755) BN159_2192 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 97/216 (45%), Positives = 141/216 (66%), Gaps = 7/216 (3%)

Query  6    VLVVDDQTLIRTGFRLILTARGIevageaadgaeavSLARELKPDVVLMDIRMPTMDGLE  65
            V++VDDQ++IR+G+R IL   GI V GEAADG  A ++ R  +PDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  66   ATRRVLQQSPD---CRVLMLTTFDLDHYVYTALSIGASGFLLKDVTPEHLAAAVRLVNSG  122
            AT   L+  PD    R+L+LTTFD D+ V +AL  GA GFL K   +E L AAV  V  G
Sbjct  64   AT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DALLAPSITRRLVE---RFasaaptpapptslsaltpRELEVLTLLGRGLSNTELAEHLT  179
            D+ L+++ ++ +V    R + +A      +  ++LT RE +V+   +RGL N  +A +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSEATVKSHVARIFSKLALRDRAQAVVLAYETGLVK  215
            +S ATVK+H+ R  +KL  RDR+Q V +A+ +GLV+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

756) BN159_2047 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 84/195 (44%), Positives = 131/195 (68%), Gaps = 3/195 (1%)

Query  16   RAGLSLMMGGADDIEIVGEASDGAEVEELVERSRPDVVLMDIRMPSMDGLTATERLRGRP  75
            RAGL  ++ +A+ I ++GEA+DG     ++  SRPDVVLMD+RMP +DG+ AT  LR+ P
Sbjct  14   RAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  76   D--APQVVLLTTFHADEQVLRALRAGAAGFVLKDTPPaeiveavrrvaaGDPVLSPTVTR  133
            D  A ++++LTTF++DE+VL ALRAGA GF+ K + +  ++ AV  VA GD  LS+  ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  134  QLMEHaaggaadtrrtrardrvaaLNDREREVAVAVGRGLSNAEIATGLFMSVATVKTHV  193
             ++ +    +  +       R A+L +RE +V ++ +RGL N  IA +LF+S ATVKTH+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  194  SRILTKLDLNNRVQI  208
            +R +TKL+  +R Q+
Sbjct  193  NRAMTKLHARDRGQL  207

757) Kfla_4301 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 86/202 (43%), Positives = 133/202 (66%), Gaps = 5/202 (2%)

Query  21   SLEMMLDGAHGIAVVGQAADGDEVPAAVDAHFPDLVLMDLRMPRVDGIVATRRVRARK--  78
            +L  +L++A GI V+G+AADG    A + +  PD+VLMDLRMP +DG+ AT  +RA    
Sbjct  16   GLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL  74

Query  79   NPPEVVVLTTFDTDENVLHALRAGASGFLLKDTPPAQIVEAVRRVAAGDPILSPAITRRL  138
            N+  ++VLTTFD DE+VL ALRAGA GFL K + +  ++ AV  VA GD  LS++ ++ +
Sbjct  75   NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTV  134

Query  139  ME--RaatqadahtqaqeaLSRLSPREYDVMLAVARGKANAEIAAELFMSVATVKAHISH  196
            +   R   ++ ++ +     + L+ RE DV+L+ ARG  N  IA +LF+S ATVK+H+++
Sbjct  135  VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNR  194

Query  197  ILTKLEVSNRTQIALLAHDAGL  218
             +TKL+  +R Q+  +A  +GL
Sbjct  195  AMTKLHARDRGQLVSIAFRSGL  216

758) SCAB_75551 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 138/222 (63%), Gaps = 21/222 (9%)

Query  13   VVVADDQASVREGLSLMLDLLPDIDVVGSAADGRQVLDLVAELSPDAVLLDLHMPVMDGI  72
            VV+ DDQA +R GL  +L+  ++I V+G AADGR  + ++    PD VL+DL+MP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  73   EATRRLTAEH--PEVAIVVLTTYADDRSVLDALRAGARSYLTKDADRMHIAATLHSAAAG  130
             AT  L A+     V I+VLTT+ +D  VL ALRAGA ++L+K AD   + A++++ A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  131  LSVLHPQVQATLLAAASGTAVSD--RPARKLPD--------GLTRREAEILTLIAQGLNN  180
                    +++L A+A+ T VSD  R +R   D         LT+RE++++   A+GL+N
Sbjct  123  --------DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  181  AEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL  222
              IA  LF+S  TVKTH+NR  +K ++RDR+     A R GL
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

759) Sare_1603 in NC_009953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 91/216 (43%), Positives = 147/216 (69%), Gaps = 4/216 (1%)

Query  32   VLIVDDDPLVRAALSMIIGGAPDLVVVGEATDGTEvpaavaacapdvvLMDIRMPRLDGL  91
            V++VDD++++RA+L  I+ +A ++ V+GEA+DG    A + +  PDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  92   AATEELRSAP--NPPEVLVLTTFDADEQVLRALRAGAGGFLLKDTAPAEIVHAVRRVAAG  149
            +AT  LR+ P  N+  +LVLTTFD+DE+VL ALRAGA+GFL K + +  ++ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  150  ETMLSPTVTRQLVAHVTGAVGVDPrrqrarrqlatlSEREREVAIALGQGRSNAEIAGEL  209
            +T LS+  ++ +V+++    G  +       + ATL++RE +V ++ ++G  N  IA +L
Sbjct  123  DTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  210  FMSVATVKAYVSRLLVKLDLNNRVQVALLVHDAGLV  245
            F+S ATVK+ ++R + KL+  +R Q+  +   +GLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

760) DIP0091 in NC_002935


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 142/219 (65%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSDLSPEQRQGLSLITRREMDVLLCVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFVHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +  ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

761) Kfla_1977 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 141/213 (67%), Gaps = 6/213 (2%)

Query  8    ILIADDQERVRIGFRLILDSQPDMQVVaeaadgaealraIRTHRPDIVLTDIRMPHVDGL  67
            +++ DDQ  +R G+R IL+ +++++V++EAADG  A+  IR  RPD+VL D+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   ELTRQVTAATFGVPVKVIVITTFEVDEYVHTALQHGASGFLLKRSGPNLLVEAVRAAVSG  127
              T  + A     +V+++V+TTF+ DE V +AL+ GA GFL K ++++ L+ AV A   G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  DTLISPQVTVRLLEQLRHR-RSGP----LPDKAALTDREREITMLVGRGLSNAEIATELF  182
            DT +S+  +  ++ +LR+R RS+     ++  A+LT+RE ++ +  +RGL N  IA +LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  183  ISVGTVKTHVANIQRKLSARSRVGIAAWAWQTG  215
            IS +TVKTH+     KL AR R  + + A ++G
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

762) Cyan7425_1401 in NC_011884


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 135/206 (66%), Gaps = 6/206 (2%)

Query  6    IRLLLVDDQQIIRQGLRSLLEAKPDLEVVGEAENGQQAVLQVAALHPDVVLMDVRMPIMD  65
            I ++LVDDQ +IR GLR++LE  +++ V+GEA +G+ A   + + +PDVVLMD+RMPI+D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVAATRLI--GQQFPQTRVLVLTTFDDDEYVSRSMQLGARGYLLKDTHSDDLAAAIRAVH  123
            GV+AT  +  + ++   R+LVLTTFD+DE V  +++ GA G+L K ++S+ L AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  RGYTQMGPGLLEKAIap---pavsstppplppelagltpREREVLSLIVAGASNREIAEA  180
            +G T +++G     ++     + S+T   L +  A LT RE +V+     G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LYISERTVKNHISRILSQLHLRDRTQ  206
            L+IS  TVK H++R +++LH RDR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

763) SCAH10.19 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 84/198 (43%), Positives = 131/198 (67%), Gaps = 6/198 (3%)

Query  16   RAGLSLMLGGAEDVEIVGEAADGDEVVALVDRTRPDVVLMDIRMPGTDGLTATERLRSRP  75
            RAGL  +L +A ++ ++GEAADG    A++  +RPDVVLMD+RMP  DG+ AT  LR+ P
Sbjct  14   RAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  76   D--APQVVVLTTFHADEQVLRALRAGAAGFVLKDTPPAEILHAVRRVAAGDPVLSPAVTR  133
            D  A +++VLTTF++DE+VL ALRAGA GF+ K + +  ++ AV  VA GD  LS++ ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  134  RLMEQAAGTAPDarharrtrararVDTLNDREREVAVAVGRGMANADIASHLFMSVATVK  193
             ++ +    +     A      AR  TL +RE +V ++ +RG+ N  IA +LF+S ATVK
Sbjct  133  TVVSDLRRRGRS---ATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVK  189

Query  194  AHVSRILAGLDLDNRVQI  211
            +H++R ++ L+  +R Q+
Sbjct  190  THLNRAMTKLHARDRGQL  207

764) SHJG_8602 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 137/221 (62%), Gaps = 7/221 (3%)

Query  5    VVVADDQTLVRTGFRMIIDAREDLEVVGEASDGREAVRLTRELAPDVVLMDVRMPVLDGI  64
            VV+ DDQ+++R+G+R I++   ++ V+GEA+DGR A  + R   PDVVLMD+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   Qatrr--iaasgsrariLVLTTWDVDAHVVAALRAGASGFLLKDIRPGELVDAIRVTARG  122
             AT      +  +  RILVLTT D D +V+AALRAGA GFL K   +  L+ A+   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DALLAPSVLSRV---LDRFLRTTPDPAPPPSLKDLSAREREVLTLIGQALSNAEIAERLR  179
            D+ L+++    V   L R  R++ D    +    L+ RE +V+   +++L N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSEATVKNHVTAVLRKLNLRDRVQAVVAAYDHGLV-RPRRP  219
            +S ATVK H+   + KL+ RDR Q V  A+  GLV R+ +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

765) SHJGH_8362 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 137/221 (62%), Gaps = 7/221 (3%)

Query  5    VVVADDQTLVRTGFRMIIDAREDLEVVGEASDGREAVRLTRELAPDVVLMDVRMPVLDGI  64
            VV+ DDQ+++R+G+R I++   ++ V+GEA+DGR A  + R   PDVVLMD+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   Qatrr--iaasgsrariLVLTTWDVDAHVVAALRAGASGFLLKDIRPGELVDAIRVTARG  122
             AT      +  +  RILVLTT D D +V+AALRAGA GFL K   +  L+ A+   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DALLAPSVLSRV---LDRFLRTTPDPAPPPSLKDLSAREREVLTLIGQALSNAEIAERLR  179
            D+ L+++    V   L R  R++ D    +    L+ RE +V+   +++L N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSEATVKNHVTAVLRKLNLRDRVQAVVAAYDHGLV-RPRRP  219
            +S ATVK H+   + KL+ RDR Q V  A+  GLV R+ +P
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

766) Strvi_0505 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 95/224 (43%), Positives = 144/224 (65%), Gaps = 7/224 (3%)

Query  9    IRVLIADDQVMVREGFSVLLNAQPDIEVVGEAVDGRQAIAQVAALRPDVVLMDIRMPELN  68
            I V++ DDQ M+R G+  +L+ +++I V+GEA DGR A+A + + RPDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GLEATREIVaad--adaKVLVLTTFDLDEYVYQALRSGASGFLLKDASARQlgeavrvva  126
            G+ AT  + A       ++LVLTTFD DE V  ALR+GA GFL K A +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  ageallaPTVTKRLITTFSRIGEAAGLGGPLPSPQGRLAELTERENEVLVLVAQGCSNAE  186
             G++ L++  +K +++ + R G +A  +  L +   R A LT+RE +V++  A+G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT-DVELIA---RTATLTHRETDVVLGAARGLDNVS  176

Query  187  IAERLIVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  230
            IA  L+++ +TVKTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

767) FraEuI1c_4286 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 94/227 (42%), Positives = 141/227 (63%), Gaps = 13/227 (5%)

Query  1    MIRVVIVDDQAIVRTGLARIFGAEDGFDVVAECADGAQAVATVTRLRPDLVLMDVRMPRL  60
            MI VV+VDDQA++R+GL  I+  + G+ V++E ADG  A A +   RPD+VLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRQLCAAPE--PPPVLALTTFDEDEVLWGVIEAGAQGFVLKDSTAEDLLaaarvv  118
            DG+ AT  L A P+  +  +L LTTFD DE + + + AGA+GF+ K + +E L+AA   V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aaggaWFDPAVAPRMMRAYRGAVASRRREAARLDL------LTAREHDVLRLLARGQVNA  172
            A G++ + ++ A  ++   R     R R A+ ++L      LT RE DV+   ARG  N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLR----RRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  173  EIAQALRVSPGTVKSHIGAIFEKLGVRDRAAAIVFAFDHGIVRPGQD  219
             IA+ L +SP+TVK+H+     KL  RDR+  + +AF  G+V  +++
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

768) Micau_2938 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 143/218 (66%), Gaps = 6/218 (2%)

Query  10   VRILLADDQPLLRTGFRMVLGAeddldvvgeagdgve-avelSRRLLPDVVLMDIRMPRL  68
            + ++L DDQ+++R+G+R +L   +   +   A++    AV  + R  PDVVLMD+RMP L
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMPIL  59

Query  69   DGVAATRAI-VSARL-PVRVLVLTTFEQDEHVVGSLRAGAGGFLTKDVPAEDLVAAIRTV  126
            DGV+AT A+   + L +VR+LVLTTF+ DE+V+++LRAGA+GFL+K   +E L+AA+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  AAGGAVMSPRILRRLLDRF-AQVlpdpaaaparaleplTDREREVLTHMARGLSNAEIAR  185
            A G++ +S+   + ++  +  +  +            LT+RE +V+   ARGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  LLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGLV  223
             L +S +TVKTH+ + +TKL+ RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

769) ML5_5451 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 143/218 (66%), Gaps = 6/218 (2%)

Query  10   VRILLADDQPLLRTGFRMVLGAeddldvvgeagdgve-avelSRRLLPDVVLMDIRMPRL  68
            + ++L DDQ+++R+G+R +L   +   +   A++    AV  + R  PDVVLMD+RMP L
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMPIL  59

Query  69   DGVAATRAI-VSARL-PVRVLVLTTFEQDEHVVGSLRAGAGGFLTKDVPAEDLVAAIRTV  126
            DGV+AT A+   + L +VR+LVLTTF+ DE+V+++LRAGA+GFL+K   +E L+AA+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  AAGGAVMSPRILRRLLDRF-AQVlpdpaaaparaleplTDREREVLTHMARGLSNAEIAR  185
            A G++ +S+   + ++  +  +  +            LT+RE +V+   ARGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  LLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGLV  223
             L +S +TVKTH+ + +TKL+ RDR Q V +A+ +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

770) CD31A_0101 in NC_016799


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

771) CDBH8_0096 in NC_016800


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPALVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

772) CDCE8392_0054 in NC_016785


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

773) CDHC02_0097 in NC_016802


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (393),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPALVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

774) CDHC03_0062 in NC_016787


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

775) CDHC04_0058 in NC_016788


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

776) HMPREF9154_1454 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (392),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 136/208 (66%), Gaps = 3/208 (1%)

Query  10   IRVLIADDQPLQRAGQALILESADDIHVVAEAGNGEQAISLARTHRPDVVLMDVRMPgig  69
            I V++ DDQ++ RAG   ILE A+ I+V++EA++G  A+++ R  RPDVVLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   gieatgi--itRDLPGTRVIVLTTFDLDEYAFGSLRSGASAFLLKSTQPEGLVDAVRIVH  127
            G+ AT+      DL + R++VLTTFD DE  +++LR+GA +FL KS+++E+L+ AV  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  SGTAVVDPRLTRQLIDHYLQRIDEPATGKREQALAVLTPRERDVFYAIARGLTNSEISSG  187
             G + + +  ++ ++ +  +R   ++        A LT RE DV  + ARGL N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  188  LHLAPSTVKSYINTIFAKLGVRDRVHAV  215
            L ++P+TVK+ +N   +KL  RDR + V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLV  208

777) O3I_033395 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 77/172 (45%), Positives = 109/172 (64%), Gaps = 4/172 (2%)

Query  49   PQVVLMDLRMPVLDGIEATRAITSTPDAPAV--LVLTTFHEDTAVQEALAAGASGFLLKH  106
            P+VVLMDLRMP+LDG+ AT A+ + PD  AV  LVLTTF+ D  V  AL AGA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  107  AAPADLVQAVRCCAAGDGWLDPAIVGSVLGALRRAGpravtapaaltaltarereVLVLM  166
            A +  L+ AV   A GD  L ++   +V++ LRR G  A        + T  +RE  V++
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  167  ALGRS--NAEISAELFISPATTRTHVAHVIAKTASRDRTQAVVLAYQSGLMT  216
            + +R+  N  I+ +LFISPAT +TH+ + ++K  +RDR Q V +A++SGL+ 
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

778) Sare_4860 in NC_009953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 145/218 (67%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRAAVGLAGRLHpdvvvmdvrmpvLD  64
            I V++ DDQA+IR+G+  I++ ++++ V+GE +DGR+A ++    +PDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIGATRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVA  124
            G+GAT  L +    N+V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGAALLAPEVTRQLVGRYAARIRPAEDS---SSEIPLTPRELEVLRLIADGLSNSEIAAT  181
             G + L++  ++ +V+    R R+A D    +    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLVT  219
            L IS  TVKT ++R +TKL+ RDR Q V  A+RSGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

779) Lxx14540 in NC_006087


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 98/224 (44%), Positives = 150/224 (67%), Gaps = 7/224 (3%)

Query  3    IRVALVDDQALFRAGVRMLVSSQEDLefageaangaegveLVRQTNPDVVLMDIRMPVMD  62
            I V LVDDQA++RAG+R ++  + ++   GEAA+G  +  ++R + PDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATGEIVGHAAREGRTPPRVVVLTTFDLDEaaarairggaSGFVLKDAEPEFLLAAIR  122
            G++AT+ + +++  +   + R++VLTTFD DE    A+R+GA GF+ K A++E L+AA+ 
Sbjct  61   GVGATAALRADPDLN---AVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  123  TVHAGNAVIAAGATQNLFERFST-GRAAQPVP--AEFASLTSREREIFALAARGLSNAEI  179
            +V  G++ ++AGA++ +   +   GR+A  V   A  A+LT RE ++   AARGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  180  AGSEFLSEATVKTHISRILGKLGLRDRVQMVVYAFEHGLNREAE  223
            A   F+S ATVKTH++R + KL  RDR Q+V  AF  GL   AE
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

780) MODMU_4222 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 150/221 (68%), Gaps = 4/221 (1%)

Query  9    VRVLLVDDQTLVRAGFRALLDSEPGIEVVGEavdgdqavaqavatvpdvvLMDVRMPRVD  68
            + V+LVDDQ+++RAG+R++L+ ++GI V+GEA DG  A A   ++ PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GLAATARITGDARLSRTRVVVLTTFELDEYVFGALRAGASGFLLKDIEPVALIEAVRLVH  128
            G++ATA + +D+ L+  R++VLTTF+ DE V++ALRAGA GFL K  ++ +LI AV  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  129  DGQALLAPQVTRRLIEayvatgpappvpapppdaarladltpREREVLGLVGRGMSNHEI  188
             G++ L++  ++ ++            ++     AR A LT RE +V+   +RG+ N  I
Sbjct  121  KGDTSLSAGAAKTVVS---DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  189  AEHLVLSPLTAKTHVSRLFLKLGARDRAQLVVTAYETGVVS  229
            A +L +SP T KTH++R   KL ARDR+QLV  A+ +G+V+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

781) SVEN_7311 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 144/216 (67%), Gaps = 4/216 (1%)

Query  12   VVLADDQPLVRTALRMVIGDTadlvvvgeaadgaeavrvaaETGADVVVIDLRMPGTDGI  71
            VVL DDQ+++R++LR ++ D++  V+   A + +    +   + +DVV++DLRMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIR-GSRPDVVLMDLRMPILDGV  62

Query  72   EATRLITEGP--TGARVVVLTTFDDDDHVYGALHAGASGFLVKDMALDDILAAVRVVAAG  129
             AT  +  +P   + R++VLTTFD+D++V +AL+AGA GFL K    + ++AAV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  130  DALIAPGVTRRLIKEFTDrprtapavp-rrraEGITDREREVLTLVGRGLSNTEVAAELH  188
            D+ +++G ++ ++ ++  R R+A  V    R+  +T+RE +V+   +RGL N  +A +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  189  ISVATAKTYVTRLLAKLNARDRVQLVIIAYEAGLVS  224
            IS AT KT + R ++KL+ARDR QLV IA+ +GLV+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

782) SCATT_49000 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (390),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 98/217 (46%), Positives = 140/217 (65%), Gaps = 7/217 (3%)

Query  3    VRVVLADDEAMVRGALRAILECEPDLTvageaasgaevvPLVRQVRPDVVLMDVRMPEVD  62
            + VVL DD+AM+R++LR+ILE ++++ V GEAA G    +++R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATERLVSSMTVPP-RILVVTTFENDAYVYQALRAGAAGFLLKRADAGQLVSAVRLVA  121
            G+ AT  L +   + + RILV+TTF+ D  V  ALRAGA GFL K AD+  L++AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGDCLLFPAAVGRLAARY-----APAEGAGrrlrerlterecevlrlMARGLANGEIAAR  176
             GD  L ++A   + +       ++++         LT+RE +V+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LRVGPETVKTHVARVLAKLGARDRTQAVITAYESGFV  213
            L ++P TVKTH+ R ++KL ARDR Q V  A+ SG+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

783) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (390),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 98/217 (46%), Positives = 140/217 (65%), Gaps = 7/217 (3%)

Query  3    VRVVLADDEAMVRGALRAILECEPDLTvageaasgaevvPLVRQVRPDVVLMDVRMPEVD  62
            + VVL DD+AM+R++LR+ILE ++++ V GEAA G    +++R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATERLVSSMTVPP-RILVVTTFENDAYVYQALRAGAAGFLLKRADAGQLVSAVRLVA  121
            G+ AT  L +   + + RILV+TTF+ D  V  ALRAGA GFL K AD+  L++AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGDCLLFPAAVGRLAARY-----APAEGAGrrlrerlterecevlrlMARGLANGEIAAR  176
             GD  L ++A   + +       ++++         LT+RE +V+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LRVGPETVKTHVARVLAKLGARDRTQAVITAYESGFV  213
            L ++P TVKTH+ R ++KL ARDR Q V  A+ SG+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

784) Cwoe_0356 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 102/222 (46%), Positives = 147/222 (67%), Gaps = 13/222 (5%)

Query  3    IRTLLVDDQALVRGGFRLILESAPSIDVVGEACDGAEAVALARTARPDVVLMDVRMPQLD  62
            I  +LVDDQA++R+G+R ILE A +I V+GEA DG  A A+ R +RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIDATA--RIVAAEPATKVIILTTFDLDEYVFAALRAGASGFMLKDVRPAQlvdavhvva  120
            G++ATA  R  +   A ++++LTTFD DE V+AALRAGA GF+ K   +  L+ AV+ VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  ggdallaPSATRRLLDRFAGELPGDERPLPDLR------DLTERELDVLRLVAQGLSNAE  174
             GD+ L+++A++ ++    ++L    R+  D+        LT+RE DV+   A+GL N  
Sbjct  121  KGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  LAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDVGLAK  216
            +A  L +S ATVKTH++  + KL  RDR Q V +A+  GL +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

785) Psed_3179 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 82/193 (43%), Positives = 123/193 (64%), Gaps = 3/193 (1%)

Query  38   VVGAASDGAEAVALAERLDPDVVLMDLRMPRCDGVEATRLLRERR--PGVRVVVLTTYSD  95
            V+G A+DG  A A+     PDVVLMDLRMP  DGV AT  LR      +VR++VLTT+ +
Sbjct  28   VIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDG  87

Query  96   DRSVLDALRAGARGYLTKDAGGPEIREALRRVLDDRAAIDPAVQHHLLEALAG-GRPEPV  154
            D  VL ALRAGA G+L+K A++  +  A+  V  + +++ ++    ++  L   GR+   
Sbjct  88   DEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATD  147

Query  155  PVAPQRPAGLTAREAEVLTLVAEGLSNAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQA  214
                 R A LT RE++V+   A GL N  IAR L +S +TVK+H+N+ ++K++ARDR+Q 
Sbjct  148  VELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

Query  215  VAFAYRNGLVAPP  227
            V++A+R+GLV  +
Sbjct  208  VSIAFRSGLVNRA  220

786) CDB402_0057 in NC_016783


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 143/219 (66%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILSRHPR---IHIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    ++I++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFAHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +A ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

787) Gbro_3475 in NC_013441


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 99/217 (46%), Positives = 140/217 (65%), Gaps = 8/217 (3%)

Query  14   IRVLLVDDQELIRTGLRRILRVRDGFHIVGECADGSEVPAAVAEHSPDVVVMDLRMRNVD  73
            I V+LVDDQ +IR+GLR IL    G++++GE ADG    A +    PDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  74   GITATSMLAALND--PPPVLVLTTFDDDKllsgalragaagFILKDSPAESLIWAVRAVV  131
            G+ AT+ L A  D  +  +LVLTTFD+D  + +ALRAGA GF+ K + +ESLI AV AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  132  RDGAFLDPAVTGRVLTGYRRSTTGD-----IATPDELTERETDVLRLVARGRTNAEIAAG  186
            ++++ L ++ +  V+++ RR   +      IA    LT+RETDV+   ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  187  LGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHSLV  223
            L IS  TVK+H+N+  TKL+ RDR+  +  AF  +LV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

788) Sros_1746 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 96/215 (45%), Positives = 150/215 (70%), Gaps = 4/215 (1%)

Query  1    MLVDDQALLRAGFRMVLGAQPDIrvvaeagdgaaaveaarsaevdvvLMDVRMPVMDGVE  60
            +LVDDQA++RAG+R +L  +++IRV++EA+DG +A    R++  DVVLMD+RMP++DGV 
Sbjct  5    VLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  61   ATRLICAAGE--RPRVLILTTFDLDDYAFAALKAGASGFLLKDVPPSDLISAIHSVHSGD  118
            AT  + A  +    R+L+LTTFD D+  +AAL+AGA GFL K   +  LI+A+++V  GD
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  119  AVVAPSTTRRLLERFAVHLPSPGVVEQAA-LGGLTAREREVLVLVARGLSNMEIADRLDL  177
            + +++++++ ++  +  +  S+  VE  A  + LT RE +V++  ARGL N+ IA  L +
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFI  183

Query  178  AEATVKTHLGRVLAKLGLRDRAQVVVYAYESGLVT  212
            + ATVKTHL R ++KL  RDR+Q+V  A+ SGLV 
Sbjct  184  SPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

789) SGR_6267 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 96/221 (44%), Positives = 149/221 (68%), Gaps = 9/221 (4%)

Query  3    FTVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavLPLVNRLRPDVVAMDVRMPLMD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG + ++++   RPDVV MD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRLVLRTVP--HPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLV  120
            G+ AT   LR+ P  ++ +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  V
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPAAVRQLAAEY-----GtdkaraaldraaltereaaVLRLMARGLSNAEIAA  175
            A G++ L ++A + + ++      ++         A+LT+RE+ V+   ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  ALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFVAPG  216
             L ++  TVKTH++  ++KL ARDR Q V  A+ SG+V  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

790) SVEN_5029 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 92/211 (44%), Positives = 142/211 (68%), Gaps = 12/211 (5%)

Query  3    VRVVVAEDQSAVRAGLVLILGSAPDIEVVGEAADGERAVALARELRPDLVLMDVQMPRMD  62
            + VV+ +DQ+ +RAGL  IL  A +I V+GEAADG  A A+ R  RPD+VLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVTATGIVTSE-GLADV--LVLTTFDLDEYVFGALRAGASGFLLKNADARELIEAVRTVA  119
            GV AT+ + ++ +L  V  LVLTTFD DE V++ALRAGA GFL K+AD+  LI AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  RGEGLIAPAVTRRLIAEFaapsrparpaGGTDPGVL---DALTPRERQVLSKLGEGLSNA  176
            +G+  ++++ ++ +++++       R  ++TD  ++    +LT RE +V+   + GL N 
Sbjct  121  KGDTSLSAGAAKTVVSDL-----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  177  EIAVRLDMAEATVKTHVSKVLGKLELRSRVQ  207
             IA  L ++ ATVKTH+++ + KL+ R R Q
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

791) Sros_3251 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 120/175 (69%), Gaps = 3/175 (1%)

Query  48   RPDVVLMDVRMPGVDGIEATR--RIVRDSPRSRVLILTTFDLDEYAFAGLKAGASGFLPK  105
            RPDVVLMD+RMP +DG+ AT   R   D    R+L+LTTFD DE  +A+L+AGA GFL+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  106  NTRPEELLAAIRSVAAGDAAVSPRITRRLLEKFAPQLMPGAP-ERDERLALLTSREHEVL  164
            ++ +E L+AA+ +VA GD+++S+  ++ ++  +  +  +++  E   R A LT RE +V+
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV  165

Query  165  VQVARGLSNAEVATAMHLAEATVKTHFSRVLLKLGLRDRAQVVVFAYESGLIRPA  219
            +  ARGL N  +A  + ++ ATVKTH++R + KL  RDR+Q+V +A+ SGL+  A
Sbjct  166  LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

792) Strop_2458 in NC_009380


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 145/219 (67%), Gaps = 4/219 (1%)

Query  5    VRVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRTAVELAGrvhpdvvvmdvrmpvLD  64
            + V++ DDQA+IR+G+  I++ ++++ V+GE +DGR+A  +    +PDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIGASRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVA  124
            G+GA+  L +    N+V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLAPEVTRQLVGRYAARIRPAEGS---SGDIPLTPRELEVLRLIADGLSNSEIAAT  181
             G + L++  ++ +V+    R R+A +    +    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLVTW  220
            L IS  TVKT ++R +TKL+ RDR Q V  A+RSGLV +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

793) CD241_0088 in NC_016782


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 142/219 (65%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFVHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +  ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

794) CDC7B_0055 in NC_016801


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 142/219 (65%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFVHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +  ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

795) CDHC01_0089 in NC_016786


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 142/219 (65%), Gaps = 5/219 (2%)

Query  1    MIRIVLADDQPPILKAFSTIIHSRDTMRVVataangaeainaCMSHNVDVVVMDIRMPVM  60
            MI +VL DDQ+ I  ++  I++    +RV++ AA+G  A+    +   DVV+MD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITAARAILARHPR---IRIVMLTTFDDPTLVREALTAGVHGFLLKDADPEIFLTAIEA  117
            DG+ A+ A L  +P    +RI++LTTFD+   V  AL AG +GFL K AD+E +++A+EA
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  IHSGESVLASGVTKQVIDTFRHAYGSNLSPEQRQGLSLITRREMDVLLRVAQGLTNAEIS  177
            +  G++ L++G +K V+  +R+   S    E     + +T+RE DV+L  A+GL N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  ADLGIAETTVKTHITALLAKVHARDRVALVLFVHKAGLL  216
             DL I+ +TVKTH+   ++K+HARDR  LV +  ++GL+
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

796) Gbro_3238 in NC_013441


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 93/229 (41%), Positives = 148/229 (65%), Gaps = 18/229 (7%)

Query  3    ITVVIADDQAMVRQGFSALLAAQPDISVLGDASDGAEAVEVCARARPDVVLMDVRMPRRD  62
            I VV+ DDQAM+R G+ ++L  +++I V+G+A+DG  A  V   +RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLWAAEQVLRVQGPGNGAGASGSDTSGVTRVLMLTTFDIDDYVYEALRIGASGFMLKDAP  122
            G+ +A   LR          +++D ++V R+L+LTTFD D+ V  ALR GA GF+ K A 
Sbjct  61   GV-GATAALR----------ADPDLNAV-RILVLTTFDGDEEVLAALRAGADGFLAKSAD  108

Query  123  adelvravrvvaageallaPSITRRLITEVTSRRTRRKPNPAL----ASLTPREREVLDL  178
            ++ L+ AV  VA G++ L+++ ++ +++++  RR R   +  L    A+LT RE +V+  
Sbjct  109  SESLIAAVEAVAKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLG  167

Query  179  VAEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL  227
             A G  N  I+ +LF++  TVKTH++  ++KL  RDR+Q V +A+ +GL
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

797) Bfae_20460 in NC_013172


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 153/221 (70%), Gaps = 4/221 (1%)

Query  11   IALVDDQPLVRAGFAMVIDSQDDMEVVVQASDGaaaveelrarrvdvvlmdvrmPRKDGI  70
            + LVDDQ+++RAG+  +++ + ++ V+ +A+DG +A   +R+ R DVVLMD+RMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  71   EATAEILAQAPEGRAPKIIVLTTFDLDEYVVAAIRAGASGFLLKDAQPEDLLGAIRTVHS  130
             ATA  L   P+  A +I+VLTTFD DE V+AA+RAGA GFL K A++E L++A+ +V  
Sbjct  63   GATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  131  GDAVIAPSATRRLLE--RVVAAPEPEQQDASVLENLTEREREVLTLMGRGFSNQEIGAEL  188
            GD+ ++++A++ ++   R  + +  + +  +    LT+RE +V+   +RG+ N  I+ +L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  189  FVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGLVSPGAH  229
            F++ ATVKTH+ R ++KL ARDR Q V IAF +GLV+ + H
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

798) Caci_0956 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 92/221 (42%), Positives = 144/221 (66%), Gaps = 7/221 (3%)

Query  1    MVVADDQELVRSGFAMILDAQPDIevvgeagdgaaavaLTRSLSPDVVLLDVRMPVMDGI  60
            +V+ DDQ ++R+G+  IL+ +++I V+GEA+DG +A A+ R+  PDVVL+D+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EAARQITAE---GGSRILMLTTFDVDEYVYDALYAGASGFLLKDVRRDDLVHAVRVVAAG  117
             A+  + A+    + RIL+LTTFD DE V  AL AGA GFL K    + L+ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  118  DSLLAPSVTRRLIADVTsrrparagdpgaapsarLDALTPRERETLLLMARGASNAEIAA  177
            D+ L+++ ++ +++D+  R  + ++    A +    +LT RE + +L  ARG  N  IA 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIART---ATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLFVSEHTVKTHVSNILMKLGLRDRVHAVIFAYDSGLVTPS  218
             LF+S  TVKTH++  + KL  RDR + V +A+ SGLV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

799) Ndas_2087 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 103/219 (48%), Positives = 153/219 (70%), Gaps = 11/219 (5%)

Query  19   VLVADDQAMVRGSFRVLVDHTPGLSavgeaadgaeavelaRRERPDVVLMDIRMPGLDGI  78
            V++ DDQAM+R+++R ++++ +G+  +GEAADG  A  + R  RPDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  79   GATRRICADPATAGVRVLILTTFDLDEYVYaalragaagfllKDTPPSRVLDAITVVAAG  138
            GAT  + ADP   +VR+L+LTTFD DE V AALRAGA GFL K + +  ++ A+  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  139  DALLAPSVTRRLISEFARLPEPGRPP------ARALDGVTDREVEVLGLIARGLSNTELA  192
            D+ L+++ ++ ++S++ R    GR++      AR+   +T+RE +V+   ARGL N  +A
Sbjct  123  DTSLSAGAAKTVVSDLRR---RGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIA  178

Query  193  EHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV  231
             +L +S ATVKTH+ R  +KL ARDR+QLV  A+ +GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

800) Cfla_0822 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 96/206 (47%), Positives = 139/206 (68%), Gaps = 5/206 (2%)

Query  17   VVLVDDETLVRVGLRLILGADPAIEVVGEAADGVEALDVIAATSPDVVLMDIRMPRLDGL  76
            VVLVDD++++R GLR IL  D++I V+GEAADG  A+ VI ++ PDVVLMD+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  77   GATERLLAAQPD---ARVVILTTFDTDEMVlgalrlgaagfllKDTPPAEIVRHVLDAGA  133
            GAT  L  A+PD    R+++LTTFD DE VL+ALR GA GFL K + +  ++  V   + 
Sbjct  63   GATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  134  GRTTLSPSVTDRLVASVTQRPrderrtaarrrldeltererdVARAIGRGLSNAEIASEL  193
            G T+LS++ +  +V+ + +R R         R   LT+RE DV  + +RGL N  IA +L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  194  FITVATVKTHISRILEQMPADNRTHI  219
            FI+ ATVKTH++R + ++ A +R ++
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQL  207

801) Cfla_3222 in NC_014151


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 91/205 (45%), Positives = 139/205 (68%), Gaps = 5/205 (2%)

Query  6    VRVLLADDHAAIRAGLRLLLEQSGRVEVVGEASDGDVALRQARALRPDVVLMDVRMPGTD  65
            + V+L DD+A IRAGLR +LE++G + V+GEA+DG  A+   R+ RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIAATAAIVGER-LAEV--VALTTFDLDEYVLGMVRAGAAGFLLKTAGARELVDAVCRVA  122
            G++ATAA+ ++  L  V  + LTTFD DE VL+ +RAGA GFL K+A++  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEGVLAPEVTRRLLDavaaqpaeppapvvvdaRLANLTARERDVLTALGDGLSNAEIAA  182
             G+  L++  ++ ++     + + +++ V + AR A LT RE DV+ + + GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLVVSETTVKSHVSHVLAKLGVRTR  207
             L +S +TVK+H+++ ++KL  R R
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDR  204

802) O3I_023040 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 145/218 (67%), Gaps = 5/218 (2%)

Query  3    IRVLIADDQPLIRDGLSVLLNAQPDIevvgeaadgveaaRLTADCRPDVVLMDIRMPRLD  62
            I V++ DDQ++IR GL  +L+ +++I V+GEAADG  A  +  + RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATA--RIVASGAPTRVIVLTTYDLDEYVFRALRAGASGFLLKDASGLAIVDSVRTIA  120
            G+ ATA  R  +   + R++VLTT+D DE V+ ALRAGA GFL K A + +++ +V ++A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  LGDAMLAPSVTRRLLDEFarlparprpda--arlralTDRETQVLTLIARGLSNAEIAET  178
             GD+ L+++ ++ ++ ++ R    +      AR  +LT+RET+V+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LGIAEETVKTHVGRILAKLRLRDRTQAAIAAYETGLVT  216
            L I+  TVKTH+ R ++KL+ RDR Q    A+ +GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

803) VAB18032_21360 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 91/209 (44%), Positives = 134/209 (65%), Gaps = 10/209 (4%)

Query  1    MIRVLLVDDQHLIRAGLRMLCESAPDIEVVGEADNGREAISLATRLRPDVVVMDLRMPGV  60
            MI V+LVDDQ +IRAGLR + E A +I V+GEA +GR A+++    RPDVV+MDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATS--RILADRPATRVLVLTTFGDDDHLYPALTAGACGFLLKDAPPTDLLDGIRRA  118
            DG+ AT+  R  +D  A R+LVLTTF++D+++ +AL AGA GFL K A +  L+ ++   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDSPFSQEVLRRLVHRAVHARTGSPEPV------GGLSAREQEVLRLVAEGLSNAEIA  172
            A GD+++S    + +V   ++ R  S+  V      + L+ RE +V+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  ERLHIGVTTVKTHITSLMTKTGSPNRVRL  201
              L I+ +TVKTH+   MTK  + +R +L
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQL  207

804) Amir_3219 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 143/219 (66%), Gaps = 13/219 (5%)

Query  1    MISVLVADDHEMVRAGFRMILDAQDDITvvadvadgeaavrrareLRPDVCLVDIRMPGL  60
            MI V++ DD+ M+RAG+R IL+ + +I V+++ ADG +A    R  RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLRVTELLAPQA-----KVVVVTTFDTDENLHRALENGASGFLTKDAGPALLVESVRAA  115
            DG+  T  L +++     +++V+TTFD DE++  AL  GA GFL+K A++  L+ +V A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  ARGDVLISPDVTLRV---LRSWTRPSASVDV----GLLTPRERDVVREVARGLGNREIGD  168
            A+GD  +S++ +  V   LR + R+++ V++    + LT RE DVV   ARGL+N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  ALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARLVE  207
             L +S +TVKTHL  A  K  AR+R +L + AFR+ LV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

805) 2SCG18.07 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 147/219 (68%), Gaps = 5/219 (2%)

Query  3    VRVLLVDDEPLVRAGLRAVLEAQPDIevvgeaadgaavvPLVRQVRPDVVAMDVRMPLLD  62
            + V+LVDD++++RAGLR++LE +++I V+GEAADG +  +++R  RPDVV MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRALLRTVAD--PPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLI  120
            G+ AT AL R+ +D  + +ILV+TTF+ DE V  ALRAGADGFL K A +  ++ AV  +
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AEGESLLFPASVRQLAAEYGDgggnraaraelararlteregeVLRL-MARGLSNAEIAA  179
            A G++ L +++ + + ++    G + +    +AR+    +    + L  ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  RLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVA  218
             L ++  TVK+H++  ++KL ARDR Q V  A+ SG+V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

806) SFUL_1018 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 140/218 (65%), Gaps = 13/218 (5%)

Query  1    MIRVLLADDHPVVREGLRGMLDADPGLEVVGEASSGPRAEALCAELLPDIVLMDLRMPGG  60
            MI V+L DD++++R GLRG+L+ D+G+ V+GEA+ G  A A+     PD+VLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   GGVESIRRIRA-AGL-PCRVVVLTTYESDSDILRAVEAGASGYLLKDlgraelaaavraa  118
            +GV +   +RA ++L + R++VLTT+++D ++L A+ AGA G+L K  +   L AAV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  argeTVLAPSVAARLVDRLRS----------VPELPRLSERETQVLRLVAEGCTNAEIGR  168
            A+G+T L+++ A  +V  LR           ++  + L++RET+V+   A G  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  RLFIGESTVKTHLLRAFGKLGVNDRTAAVTGAMRQGLI  206
             LFI+ +TVKTHL RA  KL   DR   V+ A R GL+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

807) B005_1980 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 94/224 (42%), Positives = 149/224 (67%), Gaps = 10/224 (4%)

Query  1    MIRVLLADDQPLVRAGVRALVERDGDIEVVAEASDGRAALVELDRFRPDVLLLDLQMPVL  60
            MI V+L DDQ+++RAG+R+++E D++I V++EA+DGR+A+  +   RPDV+L+DL+MP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLDVLRELERRRTDVSGRRHVDTRVVVLTTFGEDDNVFGALRSGAAGFLLKDAGPGELR  120
            DG++    L R   D+++      R++VLTTF+ D++V++ALR+GA GFL K A++  L 
Sbjct  60   DGVGATAAL-RADPDLNA-----VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLI  113

Query  121  EAVRTVAAGEALLSPGvtrrvver---lvevepppGADRRLEGITDREREVLALVGRGRS  177
             AV +VA G++ LS+G ++ VV                 R   +T+RE +V+   +RG  
Sbjct  114  AAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLD  173

Query  178  NQEIGAELHLSPATARTHVGRLLTKlgvrdrvglvvvAYESGLI  221
            N  I+ +L +SPAT +TH+ R +TKL  RDR  LV +A+ SGL+
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

808) Oscil6304_0772 in NC_019693


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 136/207 (66%), Gaps = 5/207 (2%)

Query  12   MIRILLVDDQNLIRRGLMALLEAETDLKVVGEAENGQLAIEQVNHLQPDVVLMDIYMPVM  71
            MI ++LVDDQ +IR GL ++LE +++++V+GEA +G+ A+  +   +PDVVLMD+ MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  72   DGVQATQAIC--QQFPEVKvlvlttvdddESVAEALRGGARGYLLKDTPSEELAHAIRTV  129
            DGV AT A+    ++  V++LVLTT D+DE V  ALR+GA G+L K + SE L  A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  130  HKGYTQIGPGLVTKVMAKVQTTPLRKPIVP-VGWQE-LTPRELEVLRFIAQGASNREIAQ  187
             KG T +++G    V++ ++        V  +++   LT RE +V+   A+G  N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  188  KLYITEGTVKNHVTHILNRLHLRDRTQ  214
             L+I+ +TVK H+ + + +LH RDR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

809) Sfla_1884 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 137/220 (63%), Gaps = 13/220 (5%)

Query  10   VITLLVVDDHPVVRDGLRGMFASAPGFEVLGEAADGVTAVELTARLDPDVVLMDLRMPGG  69
            +I +++VDD++++R GLRG++  A G+ V+GEAADG +A  +     PDVVLMDLRMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  70   GGVAAIAELI---RLGARSRVLVLTTYDTESDTLPAIEAGATGYLLKDAPREELLTAVRA  126
            +GV+A A L     L A  R+LVLTT+D + + L+A+ AGA G+L K A  E L++AV A
Sbjct  60   DGVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  127  AADGRTVLSPAVASRLVS----RVRTPAAPAreplsvrerevlrlvarGTS----NREIA  178
             A G T LS++ A  +VS    R R+++     + +    +    V  G++    N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  AELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGILG  218
             +LFIS ATVKTHL +  +KL A+DR+  V+ A+  G++ 
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

810) Tcur_1300 in NC_013510


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 89/217 (42%), Positives = 142/217 (66%), Gaps = 6/217 (2%)

Query  3    ISVLIADDQQMVRAGFRMIIDSQPDMRVVAEARDGVEAVALARRLRPQVCLLDIRMPRMD  62
            I V++ DDQ M+RAG+R I++ ++++RV++EA DG  A A+ R  RP+V L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLLAGPQVPDPLRVVIVTTFDLDEYVYAALRGGATGFLLKDSRPallveavraav  122
            G+ AT  L +    +++R++++TTFD DE V AALR+GA GFL K + +  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  rGDALVSPSVTVRLLAHL-----TrpqrparrpaepLTERELQVVRLVARGRTNEEIAGE  177
            +GD+ +S++ +  ++++L     +  +      +  LT+RE +VV   ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGIV  214
            LF+S +TVKTHL     KL AR+R ++ + A  SG+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

811) SAV_4537 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 91/223 (41%), Positives = 142/223 (64%), Gaps = 8/223 (3%)

Query  6    IRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVERVRELAPDIVLMDIRMPEMN  65
            I V++ DDQ M+R G+  +L   ++I V+GEA +GR A   +R   PD+VLMD+RMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATREIVaag--gaaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  123
            G+ AT  + A     A ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGEALLAPSVTKRLITEFSRLAETPRLSASVH--AAYGelteretevlvlIAQGLSNAEI  181
             G++ L+++ +K +++++ R     R ++ V+  A  + LT+RET+V++  A+GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  182  AGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  224
            A  L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

812) B446_02190 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 137/216 (64%), Gaps = 6/216 (2%)

Query  5    VVVADDQTLVRTGFRMIIDARDDLEVVGEASDGGEAVRLTRRLDPDVVLMDVRMPVVDGI  64
            VV+ DDQ+++R+G+R I++   ++ V+GEA+DG  A  + R   PDVVLMD+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRQI-AESG-SRARVLVLTTWDVDAHVVAALRAGASGFLLKDIRPAELVDAIRLTARG  122
             AT  + A+++ +  R+LVLTT D D +V+AALRAGA GFL K   +  L+ A+   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DALLAPTVLSRVLDQF---LRATpdpappppLQDLSGREREVLTLIGQALSNAEIAQRLR  179
            D+ L++     V+ ++    R++ D    +    L+ RE +V+   +++L N  IA+ L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSEATVKNHVTAVLRKLGLRDRVQAVVAAYDHGLVQ  215
            +S ATVK H+   + KL  RDR Q V  A+  GLV+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

813) B446_33105 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (385),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 137/216 (64%), Gaps = 6/216 (2%)

Query  5    VVVADDQTLVRTGFRMIIDARDDLEVVGEASDGGEAVRLTRRLDPDVVLMDVRMPVVDGI  64
            VV+ DDQ+++R+G+R I++   ++ V+GEA+DG  A  + R   PDVVLMD+RMP++DG+
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRQI-AESG-SRARVLVLTTWDVDAHVVAALRAGASGFLLKDIRPAELVDAIRLTARG  122
             AT  + A+++ +  R+LVLTT D D +V+AALRAGA GFL K   +  L+ A+   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DALLAPTVLSRVLDQF---LRATpdpappppLQDLSGREREVLTLIGQALSNAEIAQRLR  179
            D+ L++     V+ ++    R++ D    +    L+ RE +V+   +++L N  IA+ L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  180  LSEATVKNHVTAVLRKLGLRDRVQAVVAAYDHGLVQ  215
            +S ATVK H+   + KL  RDR Q V  A+  GLV+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

814) B737_2901 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 148/216 (69%), Gaps = 7/216 (3%)

Query  1    MLIADDQALVRAGFRLILDGEPDIEVVGEAADGDQAVRLARQLRPDVTLMDIRMPGVDGL  60
            +++ DDQA++RAG+R IL+ +++I V+GEAADG  A  + R  RPDV LMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   RATELL-AGPDVPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNllveavhaaah  119
             AT  L A+PD+ +++R++++TTF+ DE+V AALRAGA GFL K A+++ L+ AV+A A 
Sbjct  63   GATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  120  gealvSPAITTRLLAHYARRAPR----RVTPPESPLTPRELDVVKAVARGETNDEICRSL  175
            G++ +S++ +  ++++  RR+       + +  + LT RE DVV + ARG  N  I R L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  VVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV  211
             +S +TVKTH+  A  KL  R+R ++   A  SGLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

815) RAM_14905 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 148/216 (69%), Gaps = 7/216 (3%)

Query  1    MLIADDQALVRAGFRLILDGEPDIEVVGEAADGDQAVRLARQLRPDVTLMDIRMPGVDGL  60
            +++ DDQA++RAG+R IL+ +++I V+GEAADG  A  + R  RPDV LMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   RATELL-AGPDVPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNllveavhaaah  119
             AT  L A+PD+ +++R++++TTF+ DE+V AALRAGA GFL K A+++ L+ AV+A A 
Sbjct  63   GATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  120  gealvSPAITTRLLAHYARRAPR----RVTPPESPLTPRELDVVKAVARGETNDEICRSL  175
            G++ +S++ +  ++++  RR+       + +  + LT RE DVV + ARG  N  I R L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  VVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV  211
             +S +TVKTH+  A  KL  R+R ++   A  SGLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

816) AMES_2900 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 148/216 (69%), Gaps = 7/216 (3%)

Query  1    MLIADDQALVRAGFRLILDGEPDIEVVGEAADGDQAVRLARQLRPDVTLMDIRMPGVDGL  60
            +++ DDQA++RAG+R IL+ +++I V+GEAADG  A  + R  RPDV LMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   RATELL-AGPDVPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNllveavhaaah  119
             AT  L A+PD+ +++R++++TTF+ DE+V AALRAGA GFL K A+++ L+ AV+A A 
Sbjct  63   GATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  120  gealvSPAITTRLLAHYARRAPR----RVTPPESPLTPRELDVVKAVARGETNDEICRSL  175
            G++ +S++ +  ++++  RR+       + +  + LT RE DVV + ARG  N  I R L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  VVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV  211
             +S +TVKTH+  A  KL  R+R ++   A  SGLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

817) AMED_2931 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 148/216 (69%), Gaps = 7/216 (3%)

Query  1    MLIADDQALVRAGFRLILDGEPDIEVVGEAADGDQAVRLARQLRPDVTLMDIRMPGVDGL  60
            +++ DDQA++RAG+R IL+ +++I V+GEAADG  A  + R  RPDV LMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   RATELL-AGPDVPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNllveavhaaah  119
             AT  L A+PD+ +++R++++TTF+ DE+V AALRAGA GFL K A+++ L+ AV+A A 
Sbjct  63   GATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  120  gealvSPAITTRLLAHYARRAPR----RVTPPESPLTPRELDVVKAVARGETNDEICRSL  175
            G++ +S++ +  ++++  RR+       + +  + LT RE DVV + ARG  N  I R L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  VVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV  211
             +S +TVKTH+  A  KL  R+R ++   A  SGLV
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

818) Strvi_1683 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 83/196 (43%), Positives = 133/196 (68%), Gaps = 11/196 (5%)

Query  12   IRVLVAEDQSAVRSGLVLILRSAPDVEVVGEAVDGLQAVEMARALRPDVVLMDVQMPRLD  71
            I V++ +DQ+ +R+GL  IL   +++ V+GEA DG  A  + R+ RPDVVLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  72   GVSATRQVVAE-QLADV--LVLTTFDLDEYVFGALRAGASGFLLKDSEAADLIEAVRTVG  128
            GV+AT  + A+ +L  V  LVLTTFD DE V++ALRAGA GFL K +++  LI AV +V+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  129  RGEGMIATAVTRRLIAEF---ARPQTAPSLNTPSPAALASLTPREREVLACLGQGLSNAQ  185
            +G+  ++++ ++ +++++   +R+ T   L + +    A+LT RE +V+   ++GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDNVS  176

Query  186  IAARLSMAEATVKTHV  201
            IA  L ++ ATVKTH+
Sbjct  177  IARDLFISPATVKTHL  192

819) ANT_15510 in NC_014960


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 85/204 (42%), Positives = 140/204 (69%), Gaps = 4/204 (1%)

Query  3    IRVLIVDDQSLFREGLKTLLTAQKDFEVVGEASNGEEALRLIANNHPHVVLMDLRMPVLD  62
            I V++VDDQ+++R GL+ +L  + ++ V+GEA++G  A+ +I  ++P+VVLMDLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVRATGRIRE--LFPEVRviilttfddddlvfdGLRAGAIGYLLKDVSSDNLFEAVRAAY  120
            GV AT+ +R    +  VR+++LTTFD+D+ V+ +LRAGA G+L K   S++L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  RGEYFLQPSITAKVVAEFARSPRPSSA-KMAELTEPLSPREIEVLFLVAEGKSNREIAEQ  179
            +G+  L ++ +  VV+++ R  R+++   +   T  L+ RE +V++  A G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LVISEGTVKNHLSSILSKLGAKDR  203
            L IS +TVK HL+  ++KL A+DR
Sbjct  181  LFISPATVKTHLNRAMTKLHARDR  204

820) Sked_25620 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 151/220 (69%), Gaps = 11/220 (5%)

Query  1    MIRVLLVDDDPLVRRSLRQILDSDPRLTVVAEADDGDGAVPAVQAHHPdvvvmdlrmrrv  60
            MI V+LVDD++++R +LR IL+ D+ + V++EA DG +A + +++ +PDVV+MDLRM  +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   HGVEATAAVRRLPD--PPEVVAMTSFGADEQVLRALDAGARGFLLKDATPTAIKEAVHAV  118
            +GV ATAA+R  PD  +  ++ +T+F++DE+VL AL AGA GFL K A + ++  AV+AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  VAGDASLSPAVARYVVDHVTSDPHGPARAAASREL----DGLTDRERAVALGVHAGLTND  174
              GD+SLS++ A+ VV    SD +  +R+A+  EL      LT+RE  V LG   GL N 
Sbjct  120  AKGDTSLSAGAAKTVV----SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  175  EIAQRMYVSAATVKTHLSSVLARLGLEGRVQLAILVERSG  214
             IA+ +++S+ATVKTHL+  +++L   +R QL  +  RSG
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

821) Kfla_6981 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 143/218 (66%), Gaps = 4/218 (1%)

Query  5    VRVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRAAVDLAVRLQpdvvvmdvrmpvLD  64
            + V++ DDQA+IR+G+  I++ ++++ V+GE +DGR+A  +    +PDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGEGVARPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPASQLLQGIRTVA  124
            G+ AT  L ++    +V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  GGAALLAPEVTRQLVGRYAARVRPAENA---PAEVPLTPRELEVLLLMADGLSNSEIAAT  181
             G + L++  ++ +V+    R R+A +    +    LT RE +V+L  A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLVT  219
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

822) SVEN_0160 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (387),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 129/194 (67%), Gaps = 9/194 (4%)

Query  4    AQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLDGLDAT-RLVAGPGVADPLAVV  62
             ++GI V+GEAADGR A  + R  RPDV L D+RMP+LDG++AT  L A+P++ +++ ++
Sbjct  22   EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL-NAVRIL  80

Query  63   VITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSAADGEALIAPSVTVRLLQAFAD  122
            V+TTFD DE V +ALRAGA GFL K ++++ L  AV + A G++ ++++ +  ++  +  
Sbjct  81   VLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLR-  139

Query  123  LPAGRPVTQ-----PVSPVTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAK  177
               GR+ T+       + +T RE +V+L+ ARGL N  IA  L IS +TVKTHL   M+K
Sbjct  140  -RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTK  198

Query  178  LGARNRVEIAMWAY  191
            L AR+R ++   A+
Sbjct  199  LHARDRGQLVSIAF  212

823) CMM_0708 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 101/230 (44%), Positives = 146/230 (64%), Gaps = 18/230 (7%)

Query  1    MIRVVLVDDQSIVRAGFRVVLETaggievvgeaaggreavelvRRLAPDVVVMDVRMPAG  60
            MI VVLVDDQ+++RAG+R +LE AG   +   A G      + R   PDVV+MD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRAITGADADASDRRPGDDRPGPAVLVATTFDLDEYVFGALEAGARGFVLKDAEP  120
            DG+ AT A+          R++ D  +  +LV TTFD DE V++AL AGA GF+ K A++
Sbjct  60   DGVGATAAL----------RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADS  109

Query  121  EEFIQAMRALAEGRAALDGVTTRRVMAEFTRR-RAASAVH--PGTEVLTPREQDIVRLLG  177
            E +I A+ A+A G ++L + +++ V++++ RR R+A+ V+  + T  LT RE D+V  LG
Sbjct  110  ESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV--LG  167

Query  178  D--GLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL  225
               GL N  I+  L I  +TVK+HL R MTKL +RDR Q V  ++RSGL+
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

824) L083_2696 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 143/220 (65%), Gaps = 5/220 (2%)

Query  3    ISVLIADDHEGFRTGFRAILDTQDDLRCVAEAADGEQAVAEVQRLRPDVAVLDIRMPRRD  62
            I V++ DD+  +R+G+R+IL+ + ++R ++EAADG  A A ++  RPDV ++D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLGAAEAILAVPG-NRTQIVVLTTHDTDEYVHRAVHAGARGFLLKSMPPEELIAAVRIAA  121
            G+GA+ A+ A P+ N  +I+VLTT D DE V  A++AGA GFL KS  +E LIAAV   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  RGDVLIDPSIVR---RHLTRFADALDPVTLPAELNQLTGRERQVLQSLSRARSNAEIARE  178
            +GD  + ++  +    +L R + +   V L A    LT RE +V+ + +R+  N  IAR+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LHIGEQTVKTHISNILRKLQLRDRTHAVAYAHLTGFAERS  218
            L I+  TVKTH++  + KL+ RDR + V+ A  +G+ +R+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

825) MASS_1515 in NC_021282


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 134/218 (62%), Gaps = 8/218 (3%)

Query  6    VGVLLVDDQELVRTGLRRILRRKDGFAIVGECADGSEVAAAVSRARPDVVIMDLRMKQMS  65
            ++V+LVDDQ ++R+GLR IL    G+ ++GE ADG    A +  +RPDVV+MDLRM  + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEAIRLLHAA---QGPPALALTTFDDDEllsgalragaagFILKDSPAEELVRAVHAVA  122
            G+ A   L+A    ++   L LTTFD+DE + +ALRAGA GF+ K + +E L+ AV+AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEAYLDPAVTSRVLNAYRRAPAAVSG----DAHDKLTARELDVLALIASGATNSEIAEQ  178
            +G++ L ++ +  V++  RR   + ++         LT RE DV+   A G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIVT  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+  G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

826) MAB_1522 in NC_010397


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 134/218 (62%), Gaps = 8/218 (3%)

Query  6    VGVLLVDDQELVRTGLRRILRRKDGFAIVGECADGSEVAAAVSRARPDVVIMDLRMKQMS  65
            ++V+LVDDQ ++R+GLR IL    G+ ++GE ADG    A +  +RPDVV+MDLRM  + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEAIRLLHAA---QGPPALALTTFDDDEllsgalragaagFILKDSPAEELVRAVHAVA  122
            G+ A   L+A    ++   L LTTFD+DE + +ALRAGA GF+ K + +E L+ AV+AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEAYLDPAVTSRVLNAYRRAPAAVSG----DAQDKLTARELDVLALIASGATNSEIAEQ  178
            +G++ L ++ +  V++  RR   + ++         LT RE DV+   A G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIVT  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+  G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

827) yxjL in NC_018150


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 134/218 (62%), Gaps = 8/218 (3%)

Query  6    VGVLLVDDQELVRTGLRRILRRKDGFAIVGECADGSEVAAAVSRARPDVVIMDLRMKQMS  65
            ++V+LVDDQ ++R+GLR IL    G+ ++GE ADG    A +  +RPDVV+MDLRM  + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEAIRLLHAA---QGPPALALTTFDDDEllsgalragaagFILKDSPAEELVRAVHAVA  122
            G+ A   L+A    ++   L LTTFD+DE + +ALRAGA GF+ K + +E L+ AV+AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEAYLDPAVTSRVLNAYRRAPAAVSG----DAHDKLTARELDVLALIASGATNSEIAEQ  178
            +G++ L ++ +  V++  RR   + ++         LT RE DV+   A G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIVT  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+  G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

828) Amir_4433 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 97/218 (45%), Positives = 136/218 (63%), Gaps = 8/218 (3%)

Query  1    MIRVLLVDDQPMVRAGLALVLRSQPDIRVVGErgdgadvvraaagCSPDLVCMDVRMPGV  60
            MI V+LVDDQ+M+RAGL  +L  +++IRV+GE +DG        G  PD+V MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATRRLRAS---GGPPVCVLTTFDDHDVLWAAVDAGAAGFELKSATPENLIEAVRTV  117
            DGV AT  LRA     +  + VLTTFD+++ + AA+ AGA GF  KSA +E+LI AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AGGGTWIDGTMLGPVLASYRRFGRPAPANA----PGELTGRELDVLRLMARGASNREIAG  173
            A G+T + +     V++  RR GR+A         + LT RE DV+   ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  RLCLAETTVKTHVGAIFGKLGARDRAAAIVFAYDSGIV  211
             L ++ +TVKTH+     KL ARDR+  + +A+ SG+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

829) SACE_7249 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 147/220 (67%), Gaps = 4/220 (1%)

Query  1    MIRVLIADDQEMVRAGFRMILESQGTIEvvgdvangvdavrvarEKRPDVCLMDIRMPGI  60
            MI V++ DDQ M+RAG+R ILE  G I V+G+ A+G  A  V R  RPDV LMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATKRLAGPGvtdpvkvvvvttFDLDEYVDAALANGASGFLLKDAGPALLIEAIQAA  120
            DG+ AT  L +    ++V+++V+TTFD DE V AAL  GA GFL K A++  LI A++A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VRGDALVSPQITVRLLKHFSQSRERVRSAVA--PPKEELTERELQVVRATAKGLTNTEIG  178
             +GD+ +S+  +  ++ ++ + R R  + V   +    LT+RE +VV ++A+GL N  I+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  RELFMSLSTVKTHLAAAQAKIGARNRVETAAWAWRSGLME  218
            R+LF+S +TVKTHL  A +K+ AR+R +  + A RSGL++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

830) BN159_7563 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 91/206 (45%), Positives = 128/206 (63%), Gaps = 9/206 (4%)

Query  9    VRVLVVDDQRLIRDGIASLLSLRAGIAVVGTAADGREAVARALELRPDVVLMDVRMPELD  68
            + V++VDDQ +IR G+ ++L   AGI V+G AADGR A A     RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GVGAVAVLRERA--PECRVVMLTTFDDEEYVVQALRAGASGYLLKDLPADELAHAVRLAH  126
            GVGA A LR  +     R+++LTTFD++E V+ ALRAGA G+L K   ++ L  AV    
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  AGVTQLESSVAR------RltealpapeppvtataeltpREIDILRLVAHGHTNREIAAH  180
             G T L ++ A+      R     ++    ++ TA LT RE D++   A+G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LYLSEGTVKNHISRILTRLALRDRTQ  206
            L++S +TVK H++R +T+L  RDR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

831) Isova_0636 in NC_015588


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 91/211 (44%), Positives = 140/211 (67%), Gaps = 17/211 (8%)

Query  9    VRVLVADDHPVVRSGIIGMLAGEPDLEvvgeapdgaaavalaaelapdvvLMDLRMPVLD  68
            + V++ DD++++R+G+ G+L  ++++ V+GEA+DG +A A+     PDVVLMDLRMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GVGATARIVG----TGPSVVVLTTYDTDADILRAVEAGATGYLLKDTPREQLVAGVRAAA  124
            GVGATA + +     +  ++VLTT+D D ++L A+ AGA G+L K +  E L+A+V A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  RGETVLAPGVATRLVTSVRTAG------------ERLTSREAEVLALVARGLSNAAIGRE  172
            +G+T L++G A  +V+ +R  G              LT RE++V+   ARGL N +I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LFIAEATVKTHLLRVFAKLGVDDRTAAVTVA  203
            LFI+ ATVKTHL R  +KL   DR   V++A
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

832) KSE_22850 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 95/218 (44%), Positives = 139/218 (64%), Gaps = 3/218 (1%)

Query  4    IRLLIADDQPLVRRGLSLILSPDPALQVVGEAENGAHAVELARELRPDVVVMDIRMPVLD  63
            I +++ DDQ+++R GL  IL  D++++V+GEA +G  A  + R  RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVDATREL--ARVLPDCRVLALSTFDLDEYVVAALRAGACGFLPKDVSPEELGAAIRTVH  121
            GV+AT  L     L   R+L L+TFD DE V+AALRAGA GFL+K   +E L AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  TGEAVVAPRLLTRLISTYvrtpatpavprpapapaDLTPRETEVWRLIATGldndaiaaa  181
             G++ +++     ++S   R   +++     +  A LT RET+V    A GLDN +IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  ldlSRSTVKNHITALFAKLDVRDRAQAVIAAYESGLVT  219
            L +S +TVK H+    +KL+ RDR+Q V  A+ SGLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

833) SVEN_3624 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 141/207 (69%), Gaps = 5/207 (2%)

Query  6    IRVVIADDEPLIRAGIRMILNSDPDIQVVAEAADGRQAVEEARAHAADVVLLDIQMPVLD  65
            I VV+ DD+++IRAG+R IL+ D++I+V++EAADGR A    R+  +DVVL+D++MP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLSALPELRRAA--PSSRVIVLTTFGERENVLRTLEHGGAGFLLKDTAPaeligavraaa  123
            G++A + LR  +   + R++VLTTF+  E+VL +L  G+ GFL K + +  LI+AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  agdaYLSPAATRHVVERL-AAGREMTRAEEARGRVAGLSEKEREVLALLGEGLSNADAGR  182
             GD+ LS++A++ VV  L   GR  T  E   +R A L+++E +V+   + GL N   +R
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELI-ARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  RLHMSEATVKTYVSRILAKLDCENRVQ  209
             L +S ATVKT ++R ++KL+  +R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

834) Sros_5499 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 93/216 (44%), Positives = 144/216 (67%), Gaps = 10/216 (4%)

Query  5    VVIADDEDLIRAGLRIIIDSEPDLTvvgeaadgaavvpvvREHRPDVVLMDVRMPAVDGI  64
            VV+ DD+ +IRAGLR I++ ++++ V+GEAADG +  +V+R  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   QATRRLASLPE--PPKVVVVTTFENDDYVYEALRAGASGFLLKRTRPAELVQAIRTVAAG  122
             AT  L + P+  + +++V+TTF+ D+ V  ALRAGA GFL K + +  L+ A+ +VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  DSLLFPaairalaa-------rreavraVPGIDRLTSREADVLRLMTRGLSNGEIAGELV  175
            D+ L ++A +++ +           V  ++    LT RE+DV+   +RGL N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  ISMETVKTHVGNVLAKLEARDRTRAVITAYESGFVS  211
            IS  TVKTH+   ++KL+ARDR + V  A+ SG+V+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

835) Deima_1242 in NC_014958


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 130/207 (63%), Gaps = 4/207 (1%)

Query  1    MIRVALVEDQTLVRQGLRSMLDLAGDMQVIGEAEDGVQATERLPELRPDVVLLDLRMPHL  60
            MI V LV+DQ+++R GLR++L+ AG ++VIGEA DG  A   +   RPDVVL+DLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGVLQRLSAHGTLPPT--LVLTTFDDDELILECVQAGARGYLLKDVALPQLLQAIRTV  118
            DG+G    L A+  L +   LVLTTFD+DE +L  ++AGA G+L K      L+ A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGGRWLQPAVTQRVLRGL-EAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIAG  177
            A G+  L ++ ++ V+ +L    R+A++      + TLT+RE DV+   A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ALRTTEGTVKSYVSNVLSKLGVRDRTR  204
             L  + +TVK+ ++  ++KL  RDR +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

836) SBI_05938 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 98/228 (43%), Positives = 155/228 (68%), Gaps = 9/228 (3%)

Query  3    IRVMLVDDQVLLRTGFRMVLAAQPDMevvaeagdgaealevlRTVEVDVVLMDVRMPRLD  62
            I V+LVDDQ ++R+G+R +L  ++++ V++EA+DG  A+ V+R    DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICAQE--GAPKVLILTTFDLDEYAFSALKAGAGGFMLKDVPPGELLAAIRAVH  120
            GV AT  + A+    A ++L+LTTFD DE  ++AL+AGA+GF+ K   +  L+AA+ AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGDAVVAPSTTRRLLDRFapmlpgaaggtgpggsarpELERLTDREREVMLLVAQGLSNG  180
             GD+ +++++++ ++  +     +A++    + +A      LT+RE +V+L  A+GL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-----LTHRETDVVLGAARGLDNV  175

Query  181  EIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV-RAQGP  227
             IA  L +S ATVKTH+ R +TKL+ RDR Q+V +A+ SGLV RA+ P
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

837) SGR_874 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 130/208 (63%), Gaps = 10/208 (4%)

Query  1    MVRDGLHNMLDSADGFTVLGEASGGKEAVELTLRTDPDVVLMDLRMPTGSGVEAIAEL-T  59
            M+R GL+ +L+ A G+ V+GEA++G+ A  +   + PDVVLMDLRMP   GV A A L +
Sbjct  12   MIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRA  70

Query  60   RRGVRA-RVLVLTTYDTDSDTLPAIEAGATGYLLKDALRDELYGAIRAAAAGRTVLSPAV  118
              ++ A R+LVLTT+D D + L+A+ AGA G+L K A  + L +A+ A A G T LS++ 
Sbjct  71   DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGA  130

Query  119  ATRLVTAVRNPAAPPAD-------DPLSTRELQILEHVERGASNREIARALFISEATVKK  171
            A  +V+ +R  + +++D         L+ RE +++    RG  N  IAR LFIS ATVK 
Sbjct  131  AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  172  HLTHIYDKLdvrdraaavaaaFRRGILG  199
            HL +   KL+ RDR+  V+ AFR G++ 
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLVN  218

838) Caci_6094 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 99/236 (42%), Positives = 155/236 (66%), Gaps = 15/236 (6%)

Query  1    MIQVLIADDQALVRTGFRMILENAPDMevvaeaadgaeaatlaldlRPDIVLMDVRMPET  60
            MI+V++ DDQA++R+G+R ILE+A ++ V++EAADG  A ++  + RPD+VLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVQATRRICAERP-GHTRILMLTTFDLDEYVYASLRAGASGFLLKDTLAADLLSAIRTV  119
            DGV AT  + A+      RIL+LTTFD DE V A+LRAGA GFL K + +  L++A+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AAGDAVVAPSVTRRLLERFVgtntagasptgttgttgtaslasalaadtltDREREVLAH  179
            A GD+ ++++ ++ ++  +                 +++ +     + TLT+RE +V+  
Sbjct  120  AKGDTSLSAGAAKTVVSDL------------RRRGRSATDVELIARTATLTHRETDVVLG  167

Query  180  LARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLRDRVQAVVYAYESGLV-RAGTP  234
             ARGL N  IA +++I+ +TVKTH++R ++KL+ RDR Q V  A+ SGLV RA  P
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

839) Deide_20700 in NC_012526


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 145/220 (66%), Gaps = 10/220 (4%)

Query  1    MIRVLLVDDHALFRQGLRSLLESEGMRVIGEASNGREAIRYAADTHPDVILMDIQMPELD  60
            MI V+LVDD+A++R GLR++LE  G+RVIGEA++GR A+    +++PDV+LMD++MP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVKATQSILEIDPN---ARVIMITMYRQDRYVFEAVKAGARGYilkdadaatlidaitRV  117
            GV AT + L  DP+    R++++T +  D  V+ A++AGA G++ K AD+ +LI A+  V
Sbjct  61   GVGATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AAGEALLDADMAQNVLDDFRDKREELPSE-----KHADLNERETMILKLLAQGFSNQDIA  172
            A G++ L A+ A+ V+ D+R +R   +++     + A L +RET ++   A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIAN  212
              L IS  TV+ +L+   TKL+  +R Q    A+R G+ N
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

840) Dgeo_0315 in NC_008025


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 91/220 (42%), Positives = 144/220 (66%), Gaps = 10/220 (4%)

Query  1    MIRVLLVDDHALFRQGLRSLLESEGMRVIGEAANGREAIRYAADTHPDVILMDIQMPELD  60
            MI V+LVDD+A++R GLR++LE  G+RVIGEAA+GR A+    +++PDV+LMD++MP LD
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVKATQSILEIDP---RARVIMITMYRQDRYVFEAVKAGARGYVlkdadaatlldaIRRV  117
            GV AT + L  DP     R++++T +  D  V+ A++AGA G++ K AD+ +L+ A+  V
Sbjct  61   GVGATAA-LRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGEALLDADLAQNVLDDFRDKREELPSE-----KHADLNERETMILKLLAQGFSNQDIA  172
            A G++ L A+ A+ V+ D+R +R   +++     + A L +RET ++   A+G+ N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGIAN  212
              L IS  TV+ +L+   TKL+  +R Q    A+R G+ N
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

841) K649_05000 in NC_021081


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 144/218 (67%), Gaps = 14/218 (6%)

Query  1    MIRILLVDDHPVVRAGLLGLLSSQPDFEVVGEASNglealglleragaDVVLMDLRMPQM  60
            MI ++LVDD++++RAGL G+L  ++++ V+GEA++G  A++++  + +DVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAAIRQVRAR--FPRVQILVLTTYDTDSKIVRAVEAGATGYLLKDVPREELFRAVRLC  118
            DGV+A   +RA   +  V+ILVLTT+D D  ++ A+ AGA G+L K    E L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AKGEAVLSPPVAARLLG----RMRGTAE-------ETLSVRELEVLALVAKGFSNKEIAR  167
            AKG++ LS+  A  +++    R R++++        TL+ RE +V+   A+G+ N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL  205
            +L IS ATVKTHL ++  KL   DR   V++A+  G++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

842) Mrub_1071 in NC_013946


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 144/218 (67%), Gaps = 14/218 (6%)

Query  1    MIRILLVDDHPVVRAGLLGLLSSQPDFEVVGEASNglealglleragaDVVLMDLRMPQM  60
            MI ++LVDD++++RAGL G+L  ++++ V+GEA++G  A++++  + +DVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAAIRQVRAR--FPRVQILVLTTYDTDSKIVRAVEAGATGYLLKDVPREELFRAVRLC  118
            DGV+A   +RA   +  V+ILVLTT+D D  ++ A+ AGA G+L K    E L+ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AKGEAVLSPPVAARLLG----RMRGTAE-------ETLSVRELEVLALVAKGFSNKEIAR  167
            AKG++ LS+  A  +++    R R++++        TL+ RE +V+   A+G+ N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  168  ELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL  205
            +L IS ATVKTHL ++  KL   DR   V++A+  G++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

843) Strop_4132 in NC_009380


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 148/219 (68%), Gaps = 9/219 (4%)

Query  2    IIEVLVVDDQPLVRSALRMVVAEVDDMVIAGEAETGEEAVRLTRELKPDVVLMDLRMPGM  61
            +I+V++VDDQ+++R++LR ++ + +  VI GEA  G  A  + R  +PDVVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVI-GEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   GGIEATGQIVRLSPE---TRVLVLTTFDEDDHVfgalqagaagflIKNMSLDDILDAVRT  118
            +G+ AT+ + R  P+    R+LVLTTFD D++V++AL+AGA GFL K+   + ++ AV +
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  VAHGNGLLAPSVTRRLIKHVVD-TRTAPTVP--RRPLSGITEREREVLTLVGRGLSNSEI  175
            VA G+  L+++ ++ ++ ++    R+A  V    R  + +T+RE +V+   +RGL N  I
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSI  177

Query  176  ADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAGL  214
            A +L +S ATVKT + R ++KL ARDR +LV  A+ +GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

844) SCATT_p05610 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 11/218 (5%)

Query  3    IRLLIVDDHPIVRDGLRGVFDGDPDFevageagdgaegvHRALALGVDVVLMDLRMPGTG  62
            I +++VDD++++R GLRG+++ D+++ V GEA+DG  +     +   DVVLMDLRMP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEAIGLLRERA--PDIRVLVLTTYDSDADVLPAIEAGATGYLLKDAPREELVRAVRAAH  120
            GV A + LR  +    +R+LVLTT+D+D +VL+A+ AGA G+L K A  E L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  QGQAVLAPTVAQKLLTHMRRPTTAPEQPP--------TDRELEVLRLVAAGTTNKDAARR  172
            +G++ L++  A+ +++++RR   ++ +          T+RE +V+   A G  N   AR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LFISEATVKTHLLHLYAKLGVRDRAAAVAEGYRKGLLS  210
            LFIS ATVKTHL +  +KL  RDR+  V+ ++R GL++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

845) liaR in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 141/218 (65%), Gaps = 11/218 (5%)

Query  3    IRLLIVDDHPIVRDGLRGVFDGDPDFevageagdgaegvHRALALGVDVVLMDLRMPGTG  62
            I +++VDD++++R GLRG+++ D+++ V GEA+DG  +     +   DVVLMDLRMP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEAIGLLRERA--PDIRVLVLTTYDSDADVLPAIEAGATGYLLKDAPREELVRAVRAAH  120
            GV A + LR  +    +R+LVLTT+D+D +VL+A+ AGA G+L K A  E L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  QGQAVLAPTVAQKLLTHMRRPTTAPEQPP--------TDRELEVLRLVAAGTTNKDAARR  172
            +G++ L++  A+ +++++RR   ++ +          T+RE +V+   A G  N   AR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LFISEATVKTHLLHLYAKLGVRDRAAAVAEGYRKGLLS  210
            LFIS ATVKTHL +  +KL  RDR+  V+ ++R GL++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

846) B446_20095 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 90/224 (41%), Positives = 143/224 (64%), Gaps = 10/224 (4%)

Query  3    IRVLIADDQMMVREGFSVLLNAMPDIEVAGEAVNGREAVERVRELAPDVVLMDIRMPELN  62
            I V++ DDQ M+R G+  +L+  ++I V GEA +GR A   +R   PDVVLMD+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATREIVaad--aaaKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVA  120
            G+ AT  + A     A ++LVLTTFD DE V  ALRAGA GFL K A +  L  +V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGEALLAPSVTRRLITEFSRLAETPG---LMPSAQAAYGelteretevlvlIAHGLSNAE  177
             G++ L+++ ++ +++++ R + ++    L++ + +    LT+RET+V++  A+GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDNVS  176

Query  178  IAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG  221
            IA  L ++ +T+KTH++R + KL  RDR Q   +A+ + LV  +
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

847) Sros_7211 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 95/207 (46%), Positives = 141/207 (69%), Gaps = 4/207 (1%)

Query  1    MIRVLIVDDEALVRSGLRMILEAAGDMAVVGEARDGDEAIAAAVRLRPQVVLMDVRMPGT  60
            MI V++VDD+A++R+GLR ILE AG + V+GEA DG  A+A     RP+VVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAAARISAASDGPGV--IMLTTFDLDEYVHEALRLGAVGFLLKDTPPRELaaavrtv  118
            DG+ A+A + A +D  +V  ++LTTFD DE V  ALR GA GFL K + +  L AAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aagqaILSPAVIKRLITSFVDKAPSRAESA-RGRLASLTAREEDVIRVLARGLSNAEIGR  177
            A G++ LS++  K +++ +  ++ S ++    +R A+LT RE DV+   ARGL N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELKLTEATVKAHVSRLLAKLGLANRVQ  204
            +L ++ ATVK+H++R ++KL   +R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

848) AMIS_47710 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 98/222 (45%), Positives = 141/222 (64%), Gaps = 9/222 (4%)

Query  5    SVLIVDDQELIRTGFRLILTARGIEVAGEAADGVQAVDAERRLRPDVVLMDIRMPGMDGL  64
             V++VDDQ +IR+G+R IL   GI V GEAADG  A    R  RPDVVLMD+RMP +DG+
Sbjct  3    DVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATRQILARNP---GCRVLMLTTFDLDRYVYaalalgasgfllKDVTADHLAAAVRLVGT  121
             AT   L  +P   + R+L+LTTFD D  V AAL  GA GFL K   ++ L AAV  V+ 
Sbjct  63   GAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  122  GDALLAPSITRRLV----QRFAATGDTPSVHRDLTALTPREREVLTLVGQGLSNTELASS  177
            GD+ L+++ ++ +V    +R  ++ D   + R  ++LT RE +V+   ++GL N  +A  
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LTLSEATVKTHVARIFAKLDLRDRAQAVVLAYETGLVTPGSR  219
            L +S ATVKTH+ R  +KL+ RDR+Q V +A+ +GLV  + +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

849) Amir_2811 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 73/173 (43%), Positives = 115/173 (67%), Gaps = 1/173 (0%)

Query  44   RPDVVVMDVRMPKLDGIAATRALAGPEAAAPVKVLVVTTFNVDHHVYEALRAGASGFLLK  103
            RPDVV+MD+RMP LDG++AT AL +     +V++LV+TTF+ D++V  ALRAGA GFL K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  104  DSPPARLLEGVRTVARGEALLDPSVTRELIGRYATRVRPREE-PVHGALAGLSPRELEVL  162
             + +  L+ +V +VA+G++ L ++ ++ +++    R R+  +  + +  A L+ RE +V+
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV  165

Query  163  RLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGLVG  215
               A G  N  IA +L +SP TVKT ++R ++KL+ RDR Q V  A R+GLV 
Sbjct  166  LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

850) Celf_2529 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 94/229 (42%), Positives = 151/229 (66%), Gaps = 9/229 (3%)

Query  9    VRVALVDDQQLVRAGFRMVIDSQPDLQVVLEagdgaqavqavaraagqvdvvLMDVRMPT  68
            + V LVDDQ ++RAG+R +++ +++++V+ EA+DG  A   +  +  +V   LMD+RMP 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVV--LMDLRMPI  58

Query  69   MDGLTATAHITAAGTDAAPAPRIIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEEMLAAI  128
            +DG+ ATA + A       A RI+VLTTFD DE VLAA+RAGA GFL K A +E ++AA+
Sbjct  59   LDGVGATAALRADP--DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  129  RTVHHGDAVIAPSSTRRLLEHLITalppdapgaaadparravadlTEREREVLVLMAKGR  188
             +V  GD+ +++++++ ++ +L       + +A+        A LT+RE +V++  A+G 
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  189  SNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVTAYETGLVRPGE  237
             N  I++DLF++ ATVKTH+ R ++KL ARDR Q V  A+ +GLV  +E
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

851) liaR in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 142/208 (69%), Gaps = 4/208 (1%)

Query  4    MIRVLLVDDDPLVRAGLTMMLRGAADIevvgevadgagvagavRRHTPDVVLMDIRMPVM  63
            MI V+LVDD++++RAGL  +L   A+I V+GE ADG +  + +R   PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  64   DGIAATRTVAGGD--RTPKVIVLTTFDTGGTVLAAMRAGAAGYLLKHTEPDEIVDAVRRA  121
            DG++AT ++ ++    + +++VLTTFD +  VLAA+RAGA G+L K ++++ ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ARDEPVLSPAAARTLIDH-aaagtgtrterarrKLAGLSDRERQIARAVADGLSNSEIGD  180
            A+++  LS++AA+T++ +    G ++       + A L++RE ++  + A GL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  RLHLSTGTVKAHLSSALTKLDLDNRVQL  208
             L +S +TVK+HL+ A+TKL+  +R QL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

852) CMS_0994 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 90/194 (47%), Positives = 133/194 (69%), Gaps = 7/194 (3%)

Query  35   GQAADGEAAVDLALGERPDVVLMDLRMPGLDGVGATARIREEA--PGVRVLVLTTYETDA  92
            G+AADG +A  +  G RPDVVLMDLRMP LDGVGATA +R ++   +VR+LVLTT++ D 
Sbjct  30   GEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDE  89

Query  93   SILTAIEAGASGYLLKAAPEEEIlagvravargevalaPGIAAALV---RQVARPAAEPA  149
             +L+A+ AGA G+L K+A  E ++A+V AVA+G+ +L++G A ++V   R+ +R+A++  
Sbjct  90   EVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVE  149

Query  150  --GPTPTLSPRETQVLALVAGGRTNARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVT  207
              + T+TL+ RET+V+   A G  N  IA +L ++PATVKTHL +   KL   DR + V+
Sbjct  150  LIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVS  209

Query  208  LAMELGLLPPAAGP  221
            +A   GL+  A  P
Sbjct  210  IAFRSGLVNRAEHP  223

853) Sros_3998 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 97/219 (45%), Positives = 135/219 (62%), Gaps = 7/219 (3%)

Query  1    MIRVVIADDQALVRAGVRMLLQAAGEMEVCGEAVDGAQAVQQAELLRPDVLLMDLRMPRM  60
            MI VV+ DDQA++RAG+R +L+ AG + V GEA DG  A       RPDV+LMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATR--RILGSWPAARIVILTTFAEDENVYAALRAGAIGFLVKDDEPERMVDAVRRA  118
            DG+ AT   R      A RI++LTTF  DE+V AALRAGA GFL K  ++E ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEPLLAPSvlrrvver----alaaeeqaavqvPAGLTDRelevlalvgvglSNAEIAD  174
            A G+  L+++  + VV      + +A +   +   A LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLVD  213
             L ++ +TVKTH++ AM KL  R+R Q   +A R GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

854) SCAB_88531 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 89/217 (42%), Positives = 135/217 (63%), Gaps = 7/217 (3%)

Query  6    IRVLIADDQELVRMGFRLILGAQPDIEIVGEAADGAGCVELARRLRPDVCLVDIRMPRLD  65
            I V++ DDQ ++R G+R IL  +++I ++GEAADG +   + R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLDVTRALAGPGVRAPLRVVVITTFDQDDYVHTALRNGACGFLLKDAPPSLLIEAVRAAA  125
            G++ T AL +     ++R++V+TTFD D+ V +ALR GA GFL K A +  LI AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  RGDALVSPAVTVRLLKHL-SPTRPDPDV-----GSVLTERERDVARLVAVGRTNQEICDR  179
            +GD+ +S++ +  ++ +L    R+  DV      + LT+RE DV    A G  N  I   
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGVV  216
            L +S +TVKTHL     K++AR+R ++ + A   G+V
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

855) SCATT_55440 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 84/208 (41%), Positives = 142/208 (69%), Gaps = 4/208 (1%)

Query  1    MIRVLLVDDDPLVRAGLTMMLRGAADIevvgevadgagvagavRRHTPDVVLMDIRMPVM  60
            MI V+LVDD++++RAGL  +L   A+I V+GE ADG +  + +R   PDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATRTVAGGD--RTPKVIVLTTFDTGGTVLAAMRAGAAGYLLKHTEPDEIVDAVRRA  118
            DG++AT ++ ++    + +++VLTTFD +  VLAA+RAGA G+L K ++++ ++ AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARDEPVLSPAAARTLIDH-aaagtgtrterarrKLAGLSDRERQIARAVADGLSNSEIGD  177
            A+++  LS++AA+T++ +    G ++       + A L++RE ++  + A GL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLHLSTGTVKAHLSSALTKLDLDNRVQL  205
             L +S +TVK+HL+ A+TKL+  +R QL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

856) L083_2841 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 147/218 (68%), Gaps = 5/218 (2%)

Query  3    IRVLVVDDQPLIRAGLVALFHAAPGIEVAGEAADGEQAIALAAQTRPDVILMDVRMPNVD  62
            I V++VDDQ++IRAGL ++++ A GI V GEAADG  A+A+   +RPDV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATRTILTTAGEPRPHIVVLTTFDLDEYVYaalaagasgfllKDTPPQRIIGALHTIV  122
            G++AT ++ + ++    +I+VLTTFD DE V AAL AGA GFL K + ++ +I+A++++ 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDILLTPRITHRLIEAYSDRHRTAIPGLSLL---RSLTARETEVLRLVGNGLSNAEIAE  179
             GD  L++  +  ++     R R+A  ++ L+    +LT RET+V+   + GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSA-TDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  RLVLSEQTVKTHVKRMMGKLGVASRAQAVVVAYESGLV  217
             L +S  TVKTH++R M KL    R+Q V +A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

857) GPOL_c30230 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 94/228 (42%), Positives = 144/228 (64%), Gaps = 17/228 (7%)

Query  3    ITLVVADDQAMVRQGFSALLAAQPDLSVLGDAADGMEAVELCRRVHPDVVLMDVRMPRRD  62
            I +V+ DDQAM+R G+ ++L  ++++ V+G+AADG  A  + R  +PDVVLMD+RMP   
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP---  57

Query  63   GLWAAAQILGARGADEVQLPADGVAGRTKVLMLTTFDIDDYVYEALRIGASGFLLKDAPa  122
                   IL++ GA    L AD      ++L+LTTFD D+ V  ALR GA GFL K A +
Sbjct  58   -------ILDGVGATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADS  109

Query  123  delvravrvvaageallaPSITRRLIREVTGRRARPRSDAAV----ETLTPREREVLDLV  178
            + L+ AV  VA G++ L+++ ++ ++ ++  RR+R+ +D  +     TLT RE +V+   
Sbjct  110  ESLIAAVEAVAKGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGA  168

Query  179  ADGKSNQEIATDLFVAEQTVKTHVSSVLTKLSLRDRAQAVVFAYENGL  226
            A G  N  IA DLF++  TVKTH++  +TKL  RDR+Q V +A+ +GL
Sbjct  169  ARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

858) O5Y_09465 in NC_022115


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (379),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 89/217 (42%), Positives = 138/217 (64%), Gaps = 8/217 (3%)

Query  18   VTLLIADDDDVTRSGLRMLLAAQPGIVVVGEASDGIEAVELSRQLRPDVVLMDVRMPLRN  77
            + +++ DD+ + R+GLR +L  ++GI V+GEA+DG  A  + R  RPDVVLMD+RMP+ +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  78   GIEATRHLQAECT-EPPKVLVITTFENDGYVTAALSAGASGFVLKRLPVPQIaaavrvva  136
            G+ AT  L+A+   ++ ++LV+TTF+ D  V AAL AGA GF+ K      + AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  137  aGEVILFPAALRRMVT-----PRPLVSAEAFP-NAALTAKEEEVLRLMATGLSNSDIAQV  190
             G+  L ++A + +V+      R+    E ++  A+LT +E +V+   A GL N  IA+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  191  LVVSLETVKTHVGNVLAKLGAQNRTHAVVIAYESGLV  227
            L +S  TVKTH+   ++KL A++R + V IA+ SGLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

859) Snas_5068 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 82/196 (42%), Positives = 131/196 (67%), Gaps = 3/196 (1%)

Query  17   RTGLRLMFGGASGIEIVGEIGDGRDVLDTVARLRPDVVLMDIRMPHVDGIAATRAL-SAR  75
            R+GLR ++ +A GI ++GE +DGR  +  +   RPDVVLMD+RMP +DG++AT AL +  
Sbjct  14   RAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  76   DTETPRVIVLTTFDADGTVVEALRAGAAGFLLKHSKPEQIvaavhaaaaGEPVLSAEVTR  135
            D ++ R++VLTTFD+D  V+ ALRAGA GFL K + +E ++AAV+A A G+  LSA  ++
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  136  TLIarvagdgadrnrrgrarerlavlSDKERDVARAVAKGLSNSEIGQSLYLSSGTVKAY  195
            T++       +          R A L+++E DV  + A+GL N  I++ L++S++TVK+ 
Sbjct  133  TVV-SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTH  191

Query  196  VSSALSKLDLTNRIQL  211
            ++ A++KL+  +R QL
Sbjct  192  LNRAMTKLHARDRGQL  207

860) ROP_64570 in NC_012522


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 134/212 (64%), Gaps = 6/212 (2%)

Query  1    MIRVLIVDDQRLVRAGLRMLCEATDDIEVVGEASNGLDAVRLVAECSPDVILMDLRMPGL  60
            MI V++VDDQ ++RAGLR + E ++ I V+GEA++G  A  ++    PDV+LMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIAATRQIASSH--SAVKVLVLTTFDDDDHFYPALAAGAAGFLVKDTDPAELLNAIRRT  118
            DG++AT  + +    +AV++LVLTTFD+D++  +AL AGA GFL K +D+  L+ A+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDTIFTPallrrlvdr---aldTAPSDERSSTSVALTGREREVLTLVGEGLGNQEIAA  175
            A GDT ++++  + +V        +A   E  + + +LT RE +V+   + GL+N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLHIGVTTVKTHVANLMEKTGCDNRVRLAVFA  207
             L I+ +TVKTH+   M K    +R +L  +A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

861) Tfu_1845 in NC_007333


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 147/218 (68%), Gaps = 4/218 (1%)

Query  1    MISVLVVDDEQLVRSGLRMILESAPDlevvgeaadgaeavalaRKLQPDVVLLDIRMPGM  60
            MI V++VDD+ ++R+GLR ILE A ++ V+GEAADG  A A+ R  +PDVVL+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAAAHLAELP--NAPKVVLLTTFDLDEYVHRGLRAKAVGFLLKDTPPRDLITAVRTV  118
            DG+ A+A L   P  NA ++++LTTFD DE V  +LRA A GFL K + +  LI+AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  YEGNAMLAPSVTKRMLERFaapsgnsaaea-aRRLEVLSERERAVLVGVARGLSNAEIAA  177
              G++ L+++ +K ++  +   + +++      R   L++RE  V++G ARGL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELGMREATVKAHVSRILTKLEKNNRVQIAILAHDAGLV  215
            +L +  ATVK+H++R +TKL+  +R Q+  +A  +GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

862) AS9A_3907 in NC_015564


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 91/216 (43%), Positives = 142/216 (66%), Gaps = 5/216 (2%)

Query  5    LSVVIVDDQNLVRHGIRSLLELADIRVIGEASDGAAAIDVIAATNPDVVLLDLRMPRYDG  64
            + VV+VDDQ ++R G+R++LE A+IRVIGEA+DG +A+ VI ++ PDVVL+DLRMP  DG
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDG  61

Query  65   lwtlen--lrlrelevpvlvlttFNDDTLVLEALRHGAQGYLLKDVTLEQLKTAVHTLAA  122
            + +            V +LVLTTF++D  VL ALR GA+G+L K    E L +AV+++A 
Sbjct  62   VGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  123  GGTLIAPSITDRLLRAI-RSGPAPTGDTF--PPADLTAREVEVLRLVAEGLNNREIAGAL  179
            G+T ++++ +  ++  + R G ++T+  +    A LT RE +V+   A GL+N  IA  L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  180  HLAEGTVKNHVSTILVKLGARDRTNAVLRALHEGLL  215
             ++ +TVK H++  + KL ARDR + V  A++ GL+
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

863) Sfla_2722 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 135/208 (65%), Gaps = 5/208 (2%)

Query  1    MIRVLVTDDEPLIRAGIRMILSSADDMEVVAEAANGREAVDIARSQRVDVALLDIQMPVM  60
            MI V++ DD+++IRAG+R IL  A+ + V++EAA+GR A  + R+ R DV L+D++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTALAELRRSAPE---VRVLILTTFGERQNVLRALGAGSAGFLLKDSapaelmravra  117
            DG+ A A LR + P+   VR+L+LTTF+  ++VL AL AG+ GFL K + +  L+ AV A
Sbjct  60   DGVGATAALR-ADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aaageaYLSPGATRHVVDSLASGGTadraerarrrLEKLTVRERDVLTLLGEGLSNADAG  177
             A G++ LS+GA++ VV  L   G +        R   LT RE DV+   + GL N   +
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  QRIHMSEATVKTYVSRILAKLECDNRVQ  205
            + + +S ATVKT ++R ++KL+  +R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

864) F750_4077 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 135/208 (65%), Gaps = 5/208 (2%)

Query  1    MIRVLVTDDEPLIRAGIRMILSSADDMEVVAEAANGREAVDIARSQRVDVALLDIQMPVM  60
            MI V++ DD+++IRAG+R IL  A+ + V++EAA+GR A  + R+ R DV L+D++MP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTALAELRRSAPE---VRVLILTTFGERQNVLRALGAGSAGFLLKDSapaelmravra  117
            DG+ A A LR + P+   VR+L+LTTF+  ++VL AL AG+ GFL K + +  L+ AV A
Sbjct  60   DGVGATAALR-ADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  aaageaYLSPGATRHVVDSLASGGTadraerarrrLEKLTVRERDVLTLLGEGLSNADAG  177
             A G++ LS+GA++ VV  L   G +        R   LT RE DV+   + GL N   +
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  178  QRIHMSEATVKTYVSRILAKLECDNRVQ  205
            + + +S ATVKT ++R ++KL+  +R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

865) CMS_0957 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 92/228 (41%), Positives = 146/228 (65%), Gaps = 14/228 (6%)

Query  19   VRVLLVDDQALVRAGFRVILESEDgievvgeaadgeegvRLAGALAPDVICMDVQMPRVD  78
            + V+LVDDQA++RAG+R ILE  +   +   A +      + G+  PDV+ MD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGS-RPDVVLMDLRMPILD  60

Query  79   GLEATRRIVADPAIRAG-VLMLTTFDREDYLFTALDAGASGFVLKSASPESLVEAVHVIS  137
            G+ AT  + ADP + A  +L+LTTFD ++ +++AL AGA GF+ KSA +ESL+ AV+ ++
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  138  RGDALLSPDVTRRVIDRF-GRGSGASdddeatptpaptiptdpRVATLTDRELEVLRLLA  196
            +GD+ LS++ ++ V+  +  RG +A+            +   +R ATLT+RE +V+   A
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSAT-----------DVELIARTATLTHRETDVVLGAA  169

Query  197  EGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGIV  244
             GL N  IA  L+++ ATVKTH++R + KL  RDR Q V +A+  G+V
Sbjct  170  RGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

866) B446_27270 in NC_021985


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  104 bits (376),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 74/171 (44%), Positives = 112/171 (66%), Gaps = 3/171 (1%)

Query  57   PDVVLMDLRMPRCDGVEATRRIRSQ--YPGTQVVVLTTFADDESLFPALRAGARGYLTKD  114
            PDVVLMDLRMP  DGV AT  +R++    + +++VLTTF +DE +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  115  AGGDEIVRAVESVLSGDAGLSPSVQRRLLERL-SQpepeptpaaaespDGLTARETEVLV  173
            A+++ ++ AVE+V  GD++LS++  + ++  L  +  +            LT RET+V++
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  174  LIAEGLNNQEIARKLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGLV  224
              A GL+N  IAR L +S ATVKTH+N   +K   +DR+Q V  A+  GLV
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

867) Caci_2656 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 94/214 (44%), Positives = 149/214 (70%), Gaps = 5/214 (2%)

Query  6    VLIVDDDDLMRAGLCAVLSSDTTIEvvaeaadghaavqaaarvLPDVILMDVRMPVLDGI  65
            V++VDD+ ++RAGL ++L  D+ I V++EAADG++A        PDV+LMD+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  66   AATRQI--VAAWPRARVLILTTFEDDDYVYgalaagasgfllKRTRPEHLIAAIHTIAGG  123
            +AT  +   +     R+L+LTTF++D+ V +AL AGA GFL K + +E LIAA++++A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  EALLSPAVTRTVID--RMIEQPARDPRTMRRLSALTPRERDVLELVARGLSNPEIAQTLV  181
            ++ LS++ ++TV+   R   ++A D   + R ++LT RE DV+   ARGL N  IA+ L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  182  VSESTVKTHMKRILDKLDLRDRVQAVILAYEAGV  215
            +S +TVKTH++R + KL+ RDR Q V +A+ +G+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

868) Caci_7346 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 135/215 (63%), Gaps = 14/215 (6%)

Query  10   VLIVDDHPVVRAGLTGMLAAEPdldvvaeaadgaeavrlalELVPDVVLMDLRMAGVDGV  69
            V++VDD++++RAGL G+L  ++++ V++EAADG  A  +     PDVVLMDLRM+ +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  70   Eatar--laaaapaIRVLILTTYDTDADIVRAVEAGATGYLLKDTPRADLAEAVRLAARG  127
             ATA     +   A+R+L+LTT+D D +++ A+ AGA G+L K +    L  AV   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  ETVLAPAVAAKLVSRLRQPA-----------AQPLTPREREVLALVARGLANAEIGRELF  176
            +T L+++ A  +VS LR+ +           +  LT RE +V+   ARGL N  I+R+LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  ISEATVKTHLVRAFGKLGVDDRTAAVTKAMAQGLL  211
            IS ATVKTHL RA  KL   DR   V+ A   GL+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

869) Strvi_5414 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 144/216 (67%), Gaps = 7/216 (3%)

Query  1    MEVIIVDDQTIVRDGLVTICERLPDVEVVAAVGDGRQALAAVAEHSPDVVLMDLRMPHMD  60
            ++V++VDDQ+++R GL  I E  +++ V++  +DGR A+A +    PDVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GIEATRHITMDH--PGTHVVVLTTFIDDESINaaltagalgyltKEAGREDVDralraaa  118
            G+ AT  +  D    + +++VLTTF +DE + AAL AGA G+L+K A+ E +  A+ A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  rgqallDPAVHARLVA-LARQQPAAGSGEL---PAGLTAREAEVLICMAKGLSNREIARS  174
            +G++ L ++    +V+ L R+  +A   EL    A LT RE++V++  A+GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHRYGL  210
            LF+S ATVKTH+NR  +K  +RDRGQ ++ A R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

870) RAM_31765 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 151/221 (69%), Gaps = 13/221 (5%)

Query  3    IRVLVADDQVMVRTGFRLVLDAAPDIEVIAEAADGETAVRLARRLRPDVTLMDIRMPGVD  62
            I V++ DDQ M+R+G+R +L+ A +I VI+EAADG +A  + R  RPDV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLRATELLAGPAVADPLRVVVVTTYDADENVYaallggacgfllKDAGPRLLVDAVRAAA  122
            G+ AT  L + +  +++R++V+TT+D+DE+V AAL +GA GFL K A++  L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEALVSPSVTVRLLARFTERARRRAQGAPDL--------LTDRESDVVLAVAQGRTNAE  174
            +G++ +S++ +  +++ +    RRR+++A D+        LT+RE+DVVL+ A+G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL  215
            IA DL +S +TVKTHL     KL+ R+R ++   A + GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

871) AMES_6102 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 151/221 (69%), Gaps = 13/221 (5%)

Query  3    IRVLVADDQVMVRTGFRLVLDAAPDIEVIAEAADGETAVRLARRLRPDVTLMDIRMPGVD  62
            I V++ DDQ M+R+G+R +L+ A +I VI+EAADG +A  + R  RPDV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLRATELLAGPAVADPLRVVVVTTYDADENVYaallggacgfllKDAGPRLLVDAVRAAA  122
            G+ AT  L + +  +++R++V+TT+D+DE+V AAL +GA GFL K A++  L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEALVSPSVTVRLLARFTERARRRAQGAPDL--------LTDRESDVVLAVAQGRTNAE  174
            +G++ +S++ +  +++ +    RRR+++A D+        LT+RE+DVVL+ A+G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL  215
            IA DL +S +TVKTHL     KL+ R+R ++   A + GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

872) AMED_6192 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 151/221 (69%), Gaps = 13/221 (5%)

Query  3    IRVLVADDQVMVRTGFRLVLDAAPDIEVIAEAADGETAVRLARRLRPDVTLMDIRMPGVD  62
            I V++ DDQ M+R+G+R +L+ A +I VI+EAADG +A  + R  RPDV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLRATELLAGPAVADPLRVVVVTTYDADENVYaallggacgfllKDAGPRLLVDAVRAAA  122
            G+ AT  L + +  +++R++V+TT+D+DE+V AAL +GA GFL K A++  L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEALVSPSVTVRLLARFTERARRRAQGAPDL--------LTDRESDVVLAVAQGRTNAE  174
            +G++ +S++ +  +++ +    RRR+++A D+        LT+RE+DVVL+ A+G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL  215
            IA DL +S +TVKTHL     KL+ R+R ++   A + GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

873) Sked_16860 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 96/224 (43%), Positives = 144/224 (65%), Gaps = 10/224 (4%)

Query  34   IRVLLVDDQELFRSGIAVIVDAQDGLEVVGQAADGSEAVRMVDDLSPDVVLMDVRMPELD  93
            I V+LVDDQ ++R+G+  I++ + G+ V+G+AADG  A  ++ +  PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  94   GVEATRQIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGASGFLLKDATPAMLRDAI  153
            GV AT    A+ RA +   +VR++VLTTFD D+   AA+R GA GFL K A +  L  A+
Sbjct  61   GVGAT----AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  154  RTVHAGNAVLAPDDLSTLLDG-RFRARRPSPPGL----EDLTPKERevlaavaaglnnae  208
             +V  G++ L+++   T++ + R R+R ++   L      LT +E +V+ + A GL+N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  209  iaRRAFVSESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGLVDPA  252
            IAR  F+S +TVKTH+   + KL  RDR Q+V +A   GLV+ A
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

874) BN159_1800 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 143/222 (65%), Gaps = 5/222 (2%)

Query  3    IRVVVADDQELVRSGFSMILEAQRDIevvaeagdgaeavaavRQHSPDVLLLDIRMPVMD  62
            I VV+ DDQ ++R+G+  ILE   +I V++EA+DG  A A +R   PDV+L+D+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEAARRVCGQSE---CKVVMLTTFDLDEYVYEALYAGASGFLLKDVRRDDLVHAVRVVA  119
            G+ A+  + ++++    ++++LTTFD DE V  AL AGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDSLLAPtvtrrlvadlvrrrrQESTAEVTPQRLEVLTAREVETLRMLARGLSNAEIAG  179
             GD+ L++  ++ +V+DL RR R  +  E+ + R   LT RE + +   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIA-RTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  ALFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLVAPGD  221
             LF+S  TVKTH++  ++KL  RDR Q V  A+ +GLV  ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

875) BN159_6633 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 146/218 (67%), Gaps = 7/218 (3%)

Query  7    VRIVLADDERMVRTALRAILSAEPDLevvgeaatgaeavsvvREQAPDVVLMDVRMPEVD  66
            + +VL DD+ M+R++LR+IL  ++++ V+GEAA G  A +V+R   PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GIRATEQILATVT-DPPRIVVVTTFENDSYVYDALRAGAAGFLLKRADADALVQAVRLVA  125
            G+ AT  + A    ++ RI+V+TTF+ D  V  ALRAGA GFL K AD+++L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  RSDTLLFPAAVRTLaa-----eharahpapppWVARLTGRESEVLRLMAGGLTNAEIAER  180
            ++DT L ++A +T+ +      ++ ++    ++ A LT RE++V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  MEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFMN  218
            + ++PATVK+H+   ++K  +RDR Q V  A+ +G++N
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

876) SACE_1919 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 97/221 (44%), Positives = 149/221 (68%), Gaps = 6/221 (2%)

Query  8    IVVADDQAMIRAGLVALLSAEPDLRvlaeaadgqaavaavqrrrpdvvLMDVRMPGVDGI  67
            +V+ DDQAMIRAGL ++L  ++++RV++EAADG++A A ++  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  68   TAAREIVDITD-GQTSVIMLTVHDLDEYVYAALRAGASGFLLKDAPPEELVRAVHTVAAG  126
             A+  +    D     +++LT  D DE V AALRAGA GFL K A +E L+ AV++VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  127  DALLAPRVTRRLLQRFASLGVRDAGTEL----SGLTDRERDVLLEVAKGGSNAEIARNLG  182
            D+ L++  ++ ++  +   G   ++ EL    + LT+RE DV+L  A+G  N  IAR+L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  183  LAELTVKSHLYHVMQKLHLNSRTQLVITAYETGLVHPGQRA  223
            ++  TVK+HL + M KLH   R QLV  A+ +GLV+ ++++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

877) Sros_7377 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 143/218 (66%), Gaps = 5/218 (2%)

Query  3    IRVLIADDQVLVRTGFQMILDAQEDMEVVATAGNGAEAVEHARRLRPDVCLLDIRMPKLD  62
            I V++ DDQ ++R+G++ IL+ + ++ V++ A++G  A    R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRILAGPGVPDPMRVVIVTTFDLDEYVYGALRAGATGFLLKDSGPTLLIEairaaa  122
            G+ AT  L +    +++R++++TTFD DE V +ALRAGA GFL K +++  LI A+ A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdaLVSPSVTVRLLEHL-AHPRSGGARPL---TEPLTERELDVVRLVARGRTNQEVAAE  178
             GD+ +S++ +  ++ +L  + RS+    L   T  LT+RE DVV   ARG  N  +A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESGVVS  216
            LF+S +TVKTHL    +KL AR+R ++ + A  SG+V+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

878) SBI_05979 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 89/218 (41%), Positives = 137/218 (63%), Gaps = 4/218 (1%)

Query  7    IRVLLADDEAMIRAGVRAVLAAGPGIEIVAEAGDGREAVEAARAHRPDVALLDIRMPRLD  66
            I V+L DD+AMIRAG+R++L  ++GI +++EA+DGR A    R+ RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GLSACEEIR--RTLPDTAVAMLTTFSEDAYIARALGGGATGFLLKAGDPHELIagvrava  124
            G++A   +R    L    + +LTTF  D  +  AL +GA GFL K++D++ LIA+V AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  ggaaFLSPKVARHVITE-lggerltrgaaarartDVLTAREREVLALVGAGLSNAEIARR  183
             G + LS+  A+ V+++     R + +    ART  LT RE +V+   + GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LHLVEGTVKGYVSAVLDRLEVGNRVQAAIVAYEAGLVA  221
            L +  +TVK  ++  + +L+  +R Q   +A+ +GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

879) Bcav_2449 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 106/223 (48%), Positives = 152/223 (69%), Gaps = 13/223 (5%)

Query  1    MIRVVVADDQALIRAGLRMILENADDMELVGEaddgaaaadlaIGTRPDVVLMDVRMPGV  60
            MI VV+ DDQA+IRAGLR ILE+A+ + ++GEA DG +A  +  G+RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEATRRIRAALPD--GPRILVLTTFDLDEYVYaalragaggfllKDALATDLLSAIRV  118
            DG+ AT  +RA  PD  + RILVLTTFD DE V AALRAGA+GFL K A +  L++A+  
Sbjct  60   DGVGATAALRAD-PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  VAAGDAIVAPPITRRLIE--RHIGSPH---DPLPRTEAELRVLTSREREVLSLIARGLSN  173
            VA GD+ +++  ++ ++   R+ G +    + ++RT +    LT RE +V+   ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDN  174

Query  174  AEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQAVIFSYECGLV  216
              IA  LF++ +TVK H++  ++KL  RDR Q V +++  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

880) Snas_5644 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 148/220 (68%), Gaps = 4/220 (1%)

Query  7    VVVADDQALVRTGFRMILTADGMDVVaeaangteaiaaVRRTRPDVVLMDIRMPELDGLE  66
            VV+ DDQA++R+G+R IL   G+ V++EAA+G  A+A +R +RPDVVLMD+RMP LDG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  67   AARRILAGG--GDTRVVILTTFDLDHYVYaalsagasgfllKDVSPEHLVAAVRMVRDGD  124
            A+  + A+      R+++LTTFD D+ V AAL AGA GFL K   +E L+AAV  V  GD
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  125  ALLAPSITRRLVE--RFVGRDGDTTAIHRDLAALTPRELEVLRLLAQGLSNAELAARLHL  182
            + L+++ ++ +V   R  GR +    +    A+LT RE +V+   A+GL N  +A  L +
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFI  183

Query  183  SEATVKTHVARILAKLQLRDRVQAVIVAYETGLVSPSDRS  222
            S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV+ ++++
Sbjct  184  SPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

881) B737_6102 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 94/221 (43%), Positives = 151/221 (69%), Gaps = 13/221 (5%)

Query  3    IRVLVADNQVMVRTGFRLVLDAAPDIEVIAEAADGETAVRLARRLRPDVTLMDIRMPGVD  62
            I V++ D+Q M+R+G+R +L+ A +I VI+EAADG +A  + R  RPDV LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLRATELLAGPAVADPLRVVVVTTYDADENVYaallggacgfllKDAGPRLLVDAVRAAA  122
            G+ AT  L + +  +++R++V+TT+D+DE+V AAL +GA GFL K A++  L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGEALVSPSVTVRLLARFTERARRRAQGAPDL--------LTDRESDVVLAVAQGRTNAE  174
            +G++ +S++ +  +++ +    RRR+++A D+        LT+RE+DVVL+ A+G  N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL  215
            IA DL +S +TVKTHL     KL+ R+R ++   A + GL+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

882) Cwoe_1616 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 145/223 (66%), Gaps = 10/223 (4%)

Query  3    IRVVVADDHELVRTGFKLILEAEPDVAVVGEARDGAEAVELVARERPDVVLMDIRMPRLD  62
            I VV+ DD+ ++R+G++ ILE ++++ V+GEA DG  A  ++   RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRVAGE----AVRVLVLTTFDLDEYVYAALRAGASGFLLKDTPAEQlvagvrvva  118
            G+ AT  + ++    AVR+LVLTTFD DE V AALRAGA GFL K + +E L+A+V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  agdallSPSVTRRVIEQFARPagslvgagsvgaaRPPAldelterelevlelIACGLSNA  178
             GD+ LS++ ++ V+ ++ R   +  +++    AR ++L +     +      A GL N 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR--GRSATDVELIARTATLTHRETDVVLGA---ARGLDNV  175

Query  179  EIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEAGVVS  221
             IA  L ++ +TVKTH+ R + KL  RDR Q V +A+ +G+V+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

883) Kfla_5710 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (369),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 93/220 (43%), Positives = 153/220 (70%), Gaps = 7/220 (3%)

Query  8    VIRVFLVDDQELVRAGFTMLVDSQPDMRVVGQAGDGGEALEKLRVTGSDVVLMDVRMPRM  67
            +I V LVDDQ ++RAG+  +++ ++++RV+G+A+DG  A+  +R + +DVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  68   DGVEATRQLQSLP--TAPRVIVLTTFDLDEYafaaikagaagfllkNTPPADLLSAIRQV  125
            DGV AT  L++ P   A R++VLTTFD DE  +AA++AGA GFL K++ +  L++A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  126  HSGDAVVSPSTTRRLLEHFA--GSLPDGEREVPDLADLTAREREVLVEVARGLSNTEIAR  183
              GD+ +S+++++ ++ ++   G  + +   ++  A LT RE +V++  ARGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  184  -LFTLSEATVKTHIGRILAKTGLRDRVALVVLGYETGLVK  222
             LF +S ATVKTH+ R ++K   RDR  LV +++ +GLV+
Sbjct  180  DLF-ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

884) VAB18032_18800 in NC_015434


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (369),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 91/215 (43%), Positives = 153/215 (72%), Gaps = 4/215 (1%)

Query  1    MVVVDDQTLVRQGIRGLLEVAQVDVVGEAADGRAALSVIAQTMPDVILLDLRMPRFDGIW  60
            +V+VDDQ+++R G+RG+LE A + V+GEAADGR+A++VI  + PDV+L+DLRMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  61   TIEQLKA-ADID-IPVLVLTTFdddalvlgalragargyllKDVTLEQLTRAIHTLADGG  118
            +   L+A +D++ + +LVLTTFD+D  VL+ALRAGA G+L K    E L  A++++A G+
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  119  TLIAPSITDRMLRAI-RSGPSPAGPD-APTVQSLTEREREVLRLVAHGYSNREIAGALFL  176
            T ++++ +  ++  + R G S+++ +  +   +LT+RE +V+   A+G  N  IA  LF+
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFI  183

Query  177  AEGTVKNHVSMILTKLGARDRTNAVLRALHEGILD  211
            + +TVK H++  +TKL ARDR + V  A++ G+++
Sbjct  184  SPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

885) ACPL_1208 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 92/221 (42%), Positives = 138/221 (63%), Gaps = 10/221 (4%)

Query  3    IRVVVADDQTAVREGLSLMLSLLDD--IEVVGEAADGEQALELVGRERPDVALMDLRMPR  60
            I VV+ DDQ+ +R GL    ++L+D  I V+GEAADG  A+ ++   RPDV LMDLRMP 
Sbjct  2    IDVVLVDDQAMIRAGLR---GILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI  58

Query  61   RDGVSTTAMIREQ--FPETRVVVLTTFADDEHILGALRAGAVGYLTKDagrvqiaqavra  118
             DGV++TA +R +  +   R++VLTTF +DE++L+ALRAGA G+L+K A+   +  AV A
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  119  aaigqgvLDPQVQQrllaaatggaaaaggtaaraERELPDGLTAREAEVLRLIAAGLSNK  178
             A G+  L +   + +++     + +A +    A       LT RE++V+   A GL N 
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR---TATLTHRETDVVLGAARGLDNV  175

Query  179  EIAKRLFVTEVTVKSHVNRLFAKAGVRDRAQAVRYAYQHGL  219
             IA+ LF++  TVK+H+NR  +K   RDR+Q V  A++ GL
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

886) Bcav_0404 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 87/212 (42%), Positives = 139/212 (66%), Gaps = 5/212 (2%)

Query  3    IRVVVADDQDLVRAGLVMILGAQPDLEVVgeaedglaalelaTRLRPDVLLVDIRMPGLD  62
            I VV+ DDQ ++RAGL  IL  ++++ V+GEA DG +A+ +    RPDV+L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEVTRRLAGPGVTDPMAVVVITTFDLDEYVLGALRAGARGFLLKDAGPELLVRAIHAAA  122
            GV  T  L +    +++ ++V+TTFD DE VL+ALRAGA GFL K A++E L+ A++A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGDALIAPNVTRRLLATFADQAPAVP----VQPIDPLTGREEEVLALVARGRTNAEIATE  178
             GD+ +++  ++ +++ +  ++ +      +     LT RE +V+   ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFVGLSTVKTHVASLMTKLGARNRVEIAMWAY  210
            LF++ +TVKTH+   MTKL AR+R ++   A+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

887) Cwoe_3768 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 136/222 (62%), Gaps = 9/222 (4%)

Query  3    IRVLLADDQQLLRAGFRMVLSAQP-DIavvgeagdgaeaveRTAQLDPDVVLMDVRMPGV  61
            I V+L DDQ ++RAG+R +L      +   +  G +A AV R ++  PDVVLMD+RMP +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMPIL  59

Query  62   DGIEATR--RIVTAGAAARVLILTTFDLDEYAFAGLRAGASGFLLKDVPPEQLTAAIRAV  119
            DG+ AT   R      A R+L+LTTFD DE  +A+LRAGA GFL K   +E L AA+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  AGGDAVVAPRVTRALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAGRTNA  179
            A GD+ +++  +++++  + ++  + +   +     +R + LT RE +V+L  A G  N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELI----ARTATLTHRETDVVLGAARGLDNV  175

Query  180  EIAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV  221
             IA  L +S ATVKTH+ R + KL  RDR Q V +A++ GLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

888) Gobs_2145 in NC_013757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 86/205 (42%), Positives = 134/205 (66%), Gaps = 13/205 (6%)

Query  1    MIDVLVVDDHALMRTGLSGLIAAAGDMRvvgtaadgaeaveevaRLAPHVVLMDLSMPVL  60
            MIDV++VDD+A++R+GL G++  AG +RV+G AADG  A   +    P+VVLMDL MP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATR--RIVEEHPSVEVLVLTSFSDRQRVIEALDAGAGGYVLKDTEPADLLAAIRST  118
            DGV+AT   R   +  +V +LVLT+F + + V+ AL AGA+G++ K +++  L+AA+ + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGHSPLDPRVARTVLHA--RRSP--------VRAAELTEREQEVLALVGHGLANKQIAR  168
            A+G+++L +  A+TV+    RR+          R+A LT+RE +V+   ++GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  RLGIRESTVKAHLTSVFQRIGVRDR  193
             L I  +TVK+HL     ++  RDR
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDR  204

889) BN6_23330 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 134/216 (63%), Gaps = 11/216 (5%)

Query  6    LVVVDDHPVVRDGLRGMLGTQPDFEIVGEAASGTEALTVVAAVRPDVVLTDLRLPDPSGG  65
            +V+VDD++++R GLRG+L  ++++ ++GEAA G  A++V+ + RPDVVL DLR+P   G 
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  66   TLIRLLRER--VPSVQVLVLTTHDTDSDVLPAVEAGAIGYLLKDAPREELFRAVRAAARG  123
                 LR    + +V++LVLTT D D +VL+A+ AGA G+L K A  E L+ AV A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  124  ETVLSPSVATlll--------srirpsrplGEARLSAREREVLALIARGRTNREAAADLH  175
            +T LS++ A  ++        S          A L+ RE +V+   ARG  N   A DL 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  176  ISEATVKTHLLHIYAKLEVPDRASAVAAAFQRGILS  211
            IS ATVKTHL +  +KL+  DR+  V+ AF+ G+++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

890) Sthe_1552 in NC_013523


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 138/217 (64%), Gaps = 14/217 (6%)

Query  4    IRLIIADDHPVVRTGIIGMLAEHEEFtvlaeaatgaeavalaRRLRPDVVLMDLRMPEMD  63
            I +++ DD++++R+G+ G+L E+  + V++EAA G  A A+ R  RPDVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GAAAVAQIRAE--MPDVHVLVLTTYDSDEDILHAVEAGATGYLLKDTTREDLFRAIRAAA  121
            G +A A +RA+  +  V++LVLTT+D+DE++L A+ AGA G+L K +  E L+ A+ A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGQPLLAPSVAARLMARLNQ-----------PRQEPLTPREIDVLRLVAQGASNKEIAAR  170
             G+  L+++ A  +++ L +           +R   LT RE DV+   A+G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  171  LSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII  207
            L IS ATVK+HL +   KL+  DR   V++A+  G++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

891) Celgi_0161 in NC_015671


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 100/219 (46%), Positives = 154/219 (71%), Gaps = 3/219 (1%)

Query  5    VRVVVVDDQPTIRLGLRMILDHEPDVEVVGEAGDGQAAvdvvrevrpdvvlldvrMPGTD  64
            + VV+VDDQ+ IR GLR IL+ ++++ V+GEA+DG++A  V+R  RPDVVL+D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEAARRIRADPDLAAVRIVVLTTFDDEEYVTgalhagahafllKDAEPATLVDTVHRVH  124
            GV A+  +RADPDL AVRI+VLTTFD++E V +AL+AGA++FL K A++ +L+ +V+ V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  RGESVLDPKVTGVVVGQWragtapraaaagraaeaigTLTQREREVLVAVARGGSNTDVA  184
            +G++ L +  +  VV++       R+A+        +TLT+RE +V+++ ARG  N  +A
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  185  AELGVGEATVKAHVHALLRKLGCTTRTQLVVTAYESGLV  223
             +L ++ ATVK+H++  + KL    R QLV  A+ SGLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

892) BN159_5518 in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 138/212 (66%), Gaps = 15/212 (7%)

Query  4    VRILLCDDHAVVRAGLLALLDSAPDIEVVgeagtgeealalaakltPDVVLMDLQLGAGI  63
            + ++L DD+A++RAGL ++L+ A +I V+GEA+ G  A+A+     PDVVLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  64   DGVETTRRLTATPG-GGPHVLVLTTYDTDADITRAIEAGATGYLLKAERPDELFAAIHAA  122
            DGV +T  L A P+  + ++LVLTT+D D ++  A+ AGA G+L K+  ++ L+AA++A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AQGRTALSAPVAGRVMANLR------------NPRPTLTDREQEILAKLSQGLGNREIAK  170
            A+G T+LSA  A  V+++LR               +TLT+RE +++   ++GL+N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  ALFISEATVKTHLGRIYDKLGVDTRAGAVAVA  202
             LFIS ATVKTHL R   KL    R+  V++A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

893) Gobs_3116 in NC_013757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 132/207 (64%), Gaps = 13/207 (6%)

Query  1    MIRVLVVDDHAVVRRGISSLLAAADGLECVGAVGDGDTALELVEQLDPDVLLLDLSMPGR  60
            MI V++VDD+A++R G+ ++L  A G+  +G  +DG +A+ ++    PDV+L+DL MP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVTVIRVLRERG--HRTPVLVLTSFGEPDLVVPALVAGADGYLLKYQDGESILDAVRCI  118
            DGV     LR     +   +LVLT+F+  + V++AL AGADG+L K  D+ES++ AV  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGGAPVDPMVTAAVLADLRDRGQG----DL------LTDREKEVLELVRQGLPNKVIAR  168
            A G++++ +  + +V++DLR RG++    +L      LT+RE +V+    +GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  169  RLRISEATVKTHVTRILQRIGATDRTQ  195
             L IS ATVKTH+ R + ++ A DR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

894) Trad_2508 in NC_014221


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 90/207 (44%), Positives = 131/207 (64%), Gaps = 9/207 (4%)

Query  1    MIRVLLVDDQTLVRQGIRSLLELSPEMQVVgeaadgeaalgliaeTAPDVVLLDLRMPKL  60
            MI V+LVDDQ+++R G+R++LE  + ++V+GEAADG +A+++I  + PDVVL+DLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGVLRALAHPP-----PTLILTTFDDDALVLDGLRAGAKGYLLKDVSLEQLVTAVRTL  115
            DG+G   AL   P       L+LTTFD+D  VL +LRAGA G+L K    E L++AV ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  AAGGTLVQPAVTERVLRGLSGVPRDYPSLE---TPDPLTGREREVVRLMAGGYSNREIAL  172
            A G+T + ++ +  V+ +L    R    +E       LT RE +VV   A G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  ALHISQGTVKNHVSSVLSKLGVRDRTR  199
             L IS +TVK H++  ++KL  RDR +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

895) SHJG_6926 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 71/171 (42%), Positives = 112/171 (66%), Gaps = 3/171 (1%)

Query  57   PDVVLMDLRMPRCDGVEATRRIRAQ--YPGTQVVVLTTYADDDSLFPALRAGARGYLTKD  114
            PDVVLMDLRMP  DGV AT  +RA+    + +++VLTT+ +D+ +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  115  AGGDEIVRAVHSVLSGDAGLSPSVQRRLLERLSQADPVPVPAA-GEAPDGLTTRETEVLV  173
            A+++ ++ AV++V  GD++LS++  + ++  L + +  +           LT RET+V++
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  174  LIGEGLTNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYSKGLV  224
              + GL N  IAR L +S ATVKTH+N   +K   +DR+Q V  A+  GLV
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

896) SHJGH_6686 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 71/171 (42%), Positives = 112/171 (66%), Gaps = 3/171 (1%)

Query  57   PDVVLMDLRMPRCDGVEATRRIRAQ--YPGTQVVVLTTYADDDSLFPALRAGARGYLTKD  114
            PDVVLMDLRMP  DGV AT  +RA+    + +++VLTT+ +D+ +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  115  AGGDEIVRAVHSVLSGDAGLSPSVQRRLLERLSQADPVPVPAA-GEAPDGLTTRETEVLV  173
            A+++ ++ AV++V  GD++LS++  + ++  L + +  +           LT RET+V++
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  174  LIGEGLTNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYSKGLV  224
              + GL N  IAR L +S ATVKTH+N   +K   +DR+Q V  A+  GLV
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

897) Sros_4115 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 143/219 (66%), Gaps = 7/219 (3%)

Query  3    IRVFVVDDQDLVRTGTIMVIQAQGDMTVVGEARDGLEALAGLGKVVADVVLMDVRMPLLD  62
            I V +VDDQ ++R+G +  I  ++++ V+GEA DG  A+A +    +DVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAG-LRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRLLagagagP-KVIVLTTFDLDEYAFAALRAGASGFLLKDAPAEEIVAAVRTVH  121
            GV AT  L A+++  + +++VLTTFD DE  +AALRAGA GFL K A +E ++AAV +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  EGDAVIAPSTTRRLLDH-----vaptlplpadppvpltdREREVLRHIAQGETNAEIAGC  176
             GD+ +++++++ ++ +      ++T          LT+RE +V+   A+G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQIPR  215
            LF+S +TVKTH+ R ++KL+ RDR Q V  A+  G + R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

898) Kfla_2113 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 142/219 (65%), Gaps = 9/219 (4%)

Query  5    IGVVVAEDQSSVRAALAELVGSDPALDLLGCGATGDEAIELATRLHPDVVLMDIRMPGTD  64
            I+VV+ +DQ+ +RA+L  ++  D+++ ++G +A G  A+ +    +PDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLTATRVVCAR--LPATKVLVLTTFDLDEYVYEALGAGATGFLLKSAPVTDILRAIHTVH  122
            G+ AT  + A   L A ++LVLTTFD DE V  AL AGA GFL KSA    ++ A+++V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  EGQAMLSPEITRRLIAEVSRGRTRRTPEA-----FEQLSPRELELVGAVLRGlsneelaa  177
             G++ LS+  ++ +++++ R R R + +         L+ RE ++V +  RGL N  +A 
Sbjct  121  KGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  elflslsTVKTYLSRIFSKLDVRDRTQLVILAYESGLAD  216
            +LF+S +TVKT L+R  +KL+ RDR QLV +A+ SGL +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

899) Snas_2579 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 89/222 (41%), Positives = 144/222 (65%), Gaps = 13/222 (5%)

Query  3    IALLIVDDHPVVRDGLRGMLSTQSDFTVVgeaaggeeaLAMLSDHDVDVMLTDLRMP---  59
            I +++VDD++++R GLRG+L  ++++ V+GEAA+G  A+A++ +   DV+L DLRMP   
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  60   APSGAALIRLIAKRHPRVRVLVLTTYDTDADVLPAMEAGAVGYLLKDTPRQDLYRAVRSA  119
            + +++A +R  +  ++ VR+LVLTT+D D +VL+A+ AGA G+L K +  + L  AV + 
Sbjct  61   GVGATAALRADPDLNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ADGETALSPSVAARLVDRLRSPGP--------ARSSALSAREIEVLSLVaagnsnkaiaa  171
            A G+T+LS++ A  +V  LR  G         AR+++L+ RE +V+   A G  N +IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  aLFISEATVKTHLLHIYGKLGVNDRAAAVAAGYDSGLLGPSS  213
             LFIS ATVKTHL +   KL   DR+  V+ ++ SGL+  + 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

900) B737_5338 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 99/216 (46%), Positives = 144/216 (67%), Gaps = 9/216 (4%)

Query  3    IRIVLADDHPVVRAGLVGLLAMEADFEIvgeaadgaeavavtaaLRPDVVLMDLRMPELD  62
            I +VL DD++++RAGL G+L  +A++ ++GEAADG  A AV  + RPDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATA--RIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELaaavraaa  120
            GV+ATA  R  +++ + R+L+LTT+D D++++ A+ AGA G+L K A +E L AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  GGETVLSPAIVAKLVN------HlrspapapaepelltpretQVLRLVARGLTNADIGRE  174
             G+T LS++    +V+      +  +     A    LT RET+V+   ARGL N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV  210
            L IS +TVKTHL R  +KL+  DR   V++A + G+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

901) RAM_27545 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 99/216 (46%), Positives = 144/216 (67%), Gaps = 9/216 (4%)

Query  3    IRIVLADDHPVVRAGLVGLLAMEADFEIvgeaadgaeavavtaaLRPDVVLMDLRMPELD  62
            I +VL DD++++RAGL G+L  +A++ ++GEAADG  A AV  + RPDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATA--RIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELaaavraaa  120
            GV+ATA  R  +++ + R+L+LTT+D D++++ A+ AGA G+L K A +E L AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  GGETVLSPAIVAKLVN------HlrspapapaepelltpretQVLRLVARGLTNADIGRE  174
             G+T LS++    +V+      +  +     A    LT RET+V+   ARGL N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV  210
            L IS +TVKTHL R  +KL+  DR   V++A + G+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

902) AMES_5338 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 99/216 (46%), Positives = 144/216 (67%), Gaps = 9/216 (4%)

Query  3    IRIVLADDHPVVRAGLVGLLAMEADFEIvgeaadgaeavavtaaLRPDVVLMDLRMPELD  62
            I +VL DD++++RAGL G+L  +A++ ++GEAADG  A AV  + RPDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATA--RIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELaaavraaa  120
            GV+ATA  R  +++ + R+L+LTT+D D++++ A+ AGA G+L K A +E L AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  GGETVLSPAIVAKLVN------HlrspapapaepelltpretQVLRLVARGLTNADIGRE  174
             G+T LS++    +V+      +  +     A    LT RET+V+   ARGL N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV  210
            L IS +TVKTHL R  +KL+  DR   V++A + G+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

903) AMED_5403 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 99/216 (46%), Positives = 144/216 (67%), Gaps = 9/216 (4%)

Query  3    IRIVLADDHPVVRAGLVGLLAMEADFEIvgeaadgaeavavtaaLRPDVVLMDLRMPELD  62
            I +VL DD++++RAGL G+L  +A++ ++GEAADG  A AV  + RPDVVLMDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATA--RIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELaaavraaa  120
            GV+ATA  R  +++ + R+L+LTT+D D++++ A+ AGA G+L K A +E L AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  GGETVLSPAIVAKLVN------HlrspapapaepelltpretQVLRLVARGLTNADIGRE  174
             G+T LS++    +V+      +  +     A    LT RET+V+   ARGL N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV  210
            L IS +TVKTHL R  +KL+  DR   V++A + G+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

904) SBI_05574 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 98/219 (45%), Positives = 148/219 (68%), Gaps = 7/219 (3%)

Query  3    VRIVIADDQDVVRAGFGALLDTQPDLsvvgsaadgaaavgvCRETRPDVVLMDVRMPVLD  62
            + +V+ DDQ ++RAG+ ++L+ ++++ V+G AADG +A +V R +RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   gieatrriiagagagrgpriVMLTTFDLDEYVYDALAAGASGFLLKDMTAERLFEAVRVV  122
            G+ AT  + A+++      +V LTTFD DE V  AL AGA GFL K   +E L+ AV  V
Sbjct  61   GVGATAALRADPDLNAVRILV-LTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGDALLAPTVTRRLIGEFVRLRPHTAEPSPL----ALLTPRETEVLRLIAEGLSNAEIA  178
            A GD+ L++  ++ +++++ R R ++A    L    A LT RET+V+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  179  ARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGLV  217
              L +S+ TVKTH++R ++KL ARDR+Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

905) SACTE_3189 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (365),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 140/218 (65%), Gaps = 4/218 (1%)

Query  5    IRVLICDDQVLIRTGLSTIIDAQPDLEVAGECGDGRAAVDLAAKlrpdvvvmdvrmpvlD  64
            I V++ DDQ +IR+GL  I++ ++++ V GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVPHPVKVLVVTTFNLDEYVYEALRAGAGGFLLKDAPPSQLLQGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA+GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  AGAALLDPEVTRQLVGRYAARIRPTGDA---ARDIPLTPRELEVLRLIADGLSNNEIAAA  181
             G + L +  ++ +V+    R R++ D    AR   LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQGLVT  219
            L IS  TVKT ++R +TKL  RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

906) KSE_05860 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 99/226 (44%), Positives = 151/226 (67%), Gaps = 6/226 (2%)

Query  1    MTSVLIVDDQPLQRFGFRMLLESQPDTSVageaghgaeaVRLAAELRPDVVLMDIRMPGM  60
            M  V++VDDQ++ R G+R +LE +++  V GEA++G  A  +    RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRLIVATG--GRSRVLVLTTFDLDEYAHAALRAGASGFLLKDAHPEELLagvrav  118
            DG+ AT  + A       R+LVLTTFD DE   AALRAGA GFL K A++E L+A+V AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aggdavvapaITRRLLDAYAHHLPARPPGPVDDDPRLAALTGREREILLAVARGWTNGEI  178
            A GD+ ++++ ++ ++    ++  +R++  V+  +R A+LT RE +++L+ ARG  N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRR--GRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  179  AARLVLSESTVKTHVGRVLAKIGARDRVQAVILAYDLGL-TRPNPP  223
            A  L +S +TVKTH+ R ++K+ ARDR Q V +A+  GL  R++ P
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

907) SGR_2159 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (366),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 90/210 (43%), Positives = 145/210 (70%), Gaps = 11/210 (5%)

Query  3    IRVLVAEDQSAVRAGLVLILSSAPDIevvaeagdgeaavRLARELRPDLVLMDVQMPRLD  62
            I V++ +DQ+ +RAGL  IL  A +I V++EA+DG +A  + R  RPD+VLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVAATRQVVGE-ELADV--LVLTTFDLDEYVFGALRAGASGFLLKNTDARDLLEAVRTVA  119
            GV+AT  + ++ +L  V  LVLTTFD DE V++ALRAGA GFL K++D+  L+ AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  RGEGLIAPAVTRRLIAEFAGASPRHGRRTADPAVL---DALTRREREVLGCLGEGLSNAE  176
            +G+  ++++ ++ +++++     R+GR ++D  ++    +LT+RE +V+   + GL N  
Sbjct  121  KGDTSLSAGAAKTVVSDL----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  177  IALRLAMAEATVKTHVSRVLGKLELRSRVQ  206
            IA  L ++ ATVKTH++R + KL+ R R Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

908) A605_08695 in NC_020302


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (365),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 93/226 (42%), Positives = 144/226 (64%), Gaps = 13/226 (5%)

Query  1    MIRVGLVDDQPLVRAGFAMLIGSQDDMAVRWQAGDGAEVPSQEPV------DVVLMDVQM  54
            MI V LVDDQ+++RAG   L G  +D ++R   G++A+  S  +V      DVVLMD++M
Sbjct  1    MIDVVLVDDQAMIRAG---LRGILEDAGIR-VIGEAADGRSAFAVIRGSRPDVVLMDLRM  56

Query  55   PGMDGITATRRLLSGDD--HVKVIMLTTFDDGEFVSGAIDAGASGFLLKDAQPEELLDAI  112
            P +DG+ AT  L ++ D   V++++LTTFD++E V +A+ AGA GFL K A++E L+ A+
Sbjct  57   PILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  113  RLVHRGDAVLAPRVTAQVLRTLRAPRPGGSGVTRDERSLAELTPREHEVLRLIALGYSNE  172
              V +GD+ L++  +  V+  LR    ++++V    R+ A LT RE +V+   A G  N 
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNV  175

Query  173  EIAGAEFVSMATVKTHVRHILMKTSSRDRVHAVLFAYRTGLVDTAE  218
             IA   F+S ATVKTH+ + + K  +RDR + V +A+R+GLV+ AE
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

909) SAV_1282 in NC_003155


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  101 bits (365),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 89/222 (41%), Positives = 143/222 (65%), Gaps = 9/222 (4%)

Query  6    VIRVLVVDDEALIRTGFQHILDTADDIEVVAAVPGGQ-ALQTAQEIRPDVVLLDIRMPDV  64
            +I V++VDD+A+IR+G++ IL+ A+ I V++  ++G+ A+   +  RPDVVL+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  65   DGLTLLACLRRLPHPPVVAM--LTTFDMDEYVATALRSGAAGFLLKDTDPEGLPFLVRTL  122
            DG+   A LR  P+   V +  LTTFD DE V +ALR+GA GFL K +D+E+L   V ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ADGGTVLASKVTRTVVDGYLNAGPQEPA----ARSLAALTDRERAVLVLIAEGLSNADIG  178
            A G+T L++  ++TVV +    G         AR+ A+LT+RE  V++  A GL N  I+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIA  178

Query  179  TRMHLSTGTVKDHVSAILTKLKVDGRVQAALLAERAGLLKPP  220
              + +S +TVK H++  +TKL   +R Q   +A R+GL++ +
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

910) AMIS_65540 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 125/199 (63%), Gaps = 8/199 (4%)

Query  1    MIRVLLVDDQQLVRAGLRMLCDAEPGLEVVGEAGDGRAAVELAARLAPDVIVMDLRMPGV  60
            MI V+LVDDQ ++RAGLR + + ++G+ V+GEA+DGR+A  +     PDV++MDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATS--RIVGERPAARVLVLTTFGDDDHLYPALQAGACGFLLKDAPPAELLNGIRQA  118
            DG+ AT+  R   +  A R+LVLTTF++D+++ +AL+AGA GFL K A +  L+ ++   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGESPYSQEvlrrlvrr-----AVDAKPEQPRRIGGLTAREQEVLGLVGEGLSNGEIAE  173
            A G+++ S    + +V          +  E   R + LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  RMHIGVTTVKTHITALMTK  192
             + I+ +TVKTH+   MTK
Sbjct  180  DLFISPATVKTHLNRAMTK  198

911) Cwoe_0253 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 148/219 (68%), Gaps = 14/219 (6%)

Query  7    VVVADDHALARAGVRMILESQPDIavvgeagdghaavaaaDRLRPDVVLMDTHLPRLDGV  66
            VV+ DD+A+ RAG+R ILE +++I V+GEA+DG++A A     RPDVVLMD ++P LDGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   AAT------RRLAAHRVLLLTSGSPEERLVEALRAGARGFLLKHASAGDLVAAVRAVAAG  120
            +AT        L A R+L+LT+   +E ++ ALRAGA GFL K A +  L+AAV AVA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  DMLLSPAATRALFERIAPMLHLDAAPPPSAL----GELTERELDVLRLLARGLSNGEIAA  176
            D  LS++A++++   ++ + + + ++    L    + LT+RE DV+   ARGL N  IA 
Sbjct  123  DTSLSAGAAKTV---VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  QLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSGLVQ  215
            +LF+S ATVKTH+++ + KL  RDR Q V +A+ SGLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

912) L083_8036 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 144/218 (67%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQALIRTGFATIIDAQPDLTIVGECGDGRAAVDLAArlrpdvvvmdvrmpvld  64
            I V++ DDQA+IR+G+  I++ ++++ ++GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIAATRLLAGAGVADPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLQGIRTVA  124
            G++AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGSALLAPEVTRQLVGRYAARIRPA---DRKPDDPVLTPREMDVLRLIAEGLSNSEIAAA  181
             G + L++  ++ +V+    R R+A   +  +  + LT RE DV+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRLLTKLSLRDRVQAVVYAYRTGLVT  219
            L IS  TVKT ++R +TKL  RDR Q V  A+R+GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

913) Asphe3_35340 in NC_015145


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 131/207 (64%), Gaps = 25/207 (12%)

Query  4    VQVLLVDDHPVVRAGLRAMLTEFEGITVAAEAADGRAALKELSRLAVLGEAVDVVLMDLQ  63
            ++V+LVDD++++RAGLR++L +  GI V +EAADGR+A+       + G   DVVLMDL+
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFA-----VIRGSRPDVVLMDLR  55

Query  64   MGAGMDGVTATAEIRRLAAPP----PVLILTTYDTDADILAAVEAGASGYMLKDAPPEQI  119
            M   +DGV ATA +R  A P      +L+LTT+D D ++LAA+ AGA G++ K A +E +
Sbjct  56   MPI-LDGVGATAALR--ADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  RQAVLAAAAGETVLAPRAAALLMNRISNPG------------TSLTPREVQLLELLATGL  167
              AV A A G+T L++ AA  +++ +   G            ++LT RE +++   A GL
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRAIAKQVFISEATVKTHLVHIYGKL  194
             N +IA+++FIS ATVKTHL +   KL
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKL  199

914) Gobs_4064 in NC_013757


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 86/204 (43%), Positives = 137/204 (68%), Gaps = 14/204 (6%)

Query  4    VRVLLVDDQALFREALGTLLDARPEVEVVGEAGDGHQALERAAALAPDVVLMDLHMPVLD  63
            + V+LVDDQA++R +L  +L+  + + V+GEA+DG+ A+    +  PDVVLMDL+MP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIAATRRLRVEQ--PGVRVLALTTFDDDEDVFaalragalgyllKDVSADRLVEAVQAAA  121
            G++AT  LR +    +VR+L LTTFD+DE+V+AALRAGA G+L K   ++ L+ AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  RGESVLQPSVAAKVVARFAQLDDAPRSRPQPLVVP----LSDRELDVLRLLADGRS--NR  175
            +G++ L ++ A  VV   ++L    RS  +  +++    L++RE DV  +L+ +R+  N 
Sbjct  121  KGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNV  175

Query  176  EIATALFLAEGTVKNHVTNVLGKL  199
             IA  LF++ +TVK H+   + KL
Sbjct  176  SIARDLFISPATVKTHLNRAMTKL  199

915) Tpau_1009 in NC_014158


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 86/207 (42%), Positives = 127/207 (62%), Gaps = 7/207 (3%)

Query  3    IRVVLADDQEMVRMGFAMILGGAADIEVVGQAADGVEAISVIARCRPDVALLDIRMPQLE  62
            I VVL DDQ M+R G+  IL +A+ I V+G+AADG  A++VI   RPDV L+D+RMP L+
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEVCRRVAG----TGVRAVMVTTFGEPDYVDDSLAAGASGFLLKDAGPDLLLAAVRAAA  118
            G+     + +     +VR +++TTF+  + V  +L AGA GFL K A+++ L+AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  EGDALISPELTVDLLARNRRAGSREPAAA--GAIAELTPREREVAACVARGRTNAEIADE  176
             GD+ +S+  +  +++  RR G         +  A LT RE +V    ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LVISLGTVKTHLSAIGQRLGARNRVEI  203
            L IS +TVKTHL+    +L AR+R ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

916) NOCYR_3662 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (363),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 97/206 (48%), Positives = 141/206 (69%), Gaps = 5/206 (2%)

Query  3    IRVLIADDHSAIRAGLRMILDAADGIevvgeaadgdvavaQARALRPDVVLMDVRMPGVD  62
            I V++ DD++ IRAGLR IL+ A GI V+GEAADG  A A  R+ RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATARITAD---GVAKVLILTTFDLDEYVFRTLRAGASGFVLKSVSGQDLVASVRAVA  119
            G++ATA + AD      ++L+LTTFD DE V+ +LRAGA GF+ KS  ++ L+A+V AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDGVLAPEVTRAVIDAFAAVPSAPAHREPDG-LGDLTerelevleclgeglSNAQIAGR  178
             GD  L++  +++V+  +     ++++ E  +  + LT+RE +V+   + GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LFIGETTVKTHVSRVLTKLGVRSRVQ  204
            LFI+ +TVKTH++R +TKL  R R Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

917) Krad_4217 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (363),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 99/219 (46%), Positives = 151/219 (69%), Gaps = 5/219 (2%)

Query  7    VLVCDDQELVRAGFATILDAQPDLEVVGEAGDGRAAVDLAlrlrpdvvvmdvrmpvmdGV  66
            V++ DDQ ++RAG+  IL+ ++++ V+GEA+DGR+A  +    RPDVV+MD+RMP++DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  67   EATR-LIAGPGVAEPLTVLVVTTFDLDQHVYDALRAGAAGFLLKDARPAELVAAVRTVAG  125
             AT  L A+P++ +++ +LV+TTFD D++V  ALRAGA GFL K A +  L+AAV +VA 
Sbjct  63   GATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  126  GEQLLAPAVTRRLVGRFAERIREVapgrggagaelagLTPREVEVLGLIARGLSNAEIAA  185
            G+  L+++ ++ +V+ +  R R  ++      A  A LT RE +V+   ARGL N  IA 
Sbjct  122  GDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  ELVISHETVKTYVSRILAKLGLRDRVQAVVLAYRTGLVA  224
            +L IS  TVKT ++R ++KL  RDR Q V +A+R+GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

918) GPOL_c19450 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 93/221 (43%), Positives = 136/221 (62%), Gaps = 6/221 (2%)

Query  2    MTRVALVDDQDLVRAGLRRILRPRDGFEVVAECSDGDEVSDMVLRHRPDVVVMDLRMRRI  61
            M  V LVDDQ ++RAGLR IL    G+ V++E +DG     ++   RPDVV+MDLRM  +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   GGVEATRRLRDDLGSGHVSPPVLVLTTFRDEQllsgalragaagFVLKDSPAEELIRAVR  121
            +GV AT  LR D  ++  +  +LVLTTF +++ + +ALRAGA GF+ K + +E LI AV 
Sbjct  60   DGVGATAALRAD--PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  122  LVAQGEAVLDPAVTAHVLDTYRS-APGPTAPQ--AAPDGLTSRELTVLGLIGRGLTNDEI  178
             VA+G++ L ++ +  V+   R  + ++T  +  A    LT RE  V+   +RGL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  179  AAELVISVVTVKSHIGKIFTKLGVRDRAAAVVYAFDHGIVE  219
            A +L IS  TVK+H+ +  TKL  RDR+  V  AF  G+V+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

919) Strvi_3806 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (363),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 138/217 (64%), Gaps = 16/217 (7%)

Query  34   IRILIVDDHPVVRDGLRGVLERDPDFTVIGEAGDGAEAVELYERRPADVVLMDLRMPRMG  93
            I +++VDD++++R GLRG+LE D+++ VIGEA+DG  A  +     +DVVLMDLRMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  94   GVEAIKRLLRGDPD---ARILVLTTYDTDSDVMgalaagatgyllKDTPREELTRAVRSA  150
            GV A   L R+DPD    RILVLTT+D D +V++AL AGA G+L K +  E L  AV + 
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  151  SSGQSVLSPAVTGRVLGQVRKPTQGP-----------LSDRELQVLRLIADGATNRQAAA  199
            + G++ LS++ +  V++++R+  +++           L++RE +V+   A G  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  200  ALFISQATVKTHLLHVYEKLGVKDRAAAVSEAHKRHL  236
             LFIS ATVKTHL +   KL  +DR+  VS A +  L
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

920) SACTE_4321 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (362),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 137/218 (63%), Gaps = 6/218 (2%)

Query  3    IRVLIADDQAMVRAGFAMILGAEDDIDVVGEAVDGLHAVELAERHRPDVVLMDIRMPRMD  62
            I V++ DDQAM+RAG+  IL  + +I V+GEA DG  A  +    RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEALRRLTRpgtvyppkvvvvttFDDDEYVQRALGEGASGFLIKDSGPALLVEAIRAAA  122
            G+ A   L     + + +++V+TTFD+DE V  AL  GA GFL K +++  L+ A+ A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  SGEALVSPAITVRLLRRLNNAVPTSREPH-----TALSEREKDLVRLVARGLTNAEIATE  177
             G++ +S++ +  ++  L     ++ + +     ++L++RE D+V   ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLVD  215
            L IS +TVKTHL    TKL AR+R ++ + A  SGLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

921) ROP_53160 in NC_012522


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (362),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 89/221 (41%), Positives = 135/221 (62%), Gaps = 5/221 (2%)

Query  6    IRVLLVDDQELVRSGLRRILRRKDGFVIVGECADGSEVPDAVAEHTPDVVLMDLRMKRVD  65
            I V+LVDDQ ++R+GLR IL    G+ ++GE ADG      +    PDVVLMDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIEATRALRSVAAPPPvlvlttfddddllS--GSLRAGAAGFILKDSPAEDLIRAVRTVA  123
            G+ AT ALR+ +   +V +L     D+     ++LRAGA GF+ K + +E LI AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  EGGACLDPAVTGRVLATYRTVA-PSTDGE-RNRLTELTARELDVLALIGRGHSNSEIGRE  181
             G++ L ++ +  V++  R  + ++TD E   R + LT RE DV+   +RG  N  I+R+
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIVSPGD  222
            L IS  TVK+H+ +   KL+ RDR+  +  AF  G+V+ ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

922) KSE_27780 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 100/218 (46%), Positives = 150/218 (69%), Gaps = 2/218 (0%)

Query  1    MIRVLVADDQALVRGSFRLLVDSAPDLTavgeaadgaealelaraQRPDVVLMDIRMPRL  60
            MI V++ DDQA++R+++R +++ A ++  +GEAADG  A+ + R+ RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATRAITADPALAGVRVLVLTTFDLDDYafaalragaagfllKDTRPAELLDAVRVV  120
            DG+ AT A+ ADP L +VR+LVLTTFD D+  +AALRAGA GFL K + +  L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  AAGEALLAPRVTRRLIEEYTRRP-EPSalpapaalagaTEREREVLALVGLGFSNEEIAA  179
            A G++ L++  ++ ++ +  RR   ++ +   A  A  T+RE +V+   + G+ N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  ELHVSLSTAKTHIGRLLQKLAARDRAQLVIAAYESGLV  217
            +L +S +T KTH+ R + KL ARDR+QLV  A+ SGLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

923) Amir_3696 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (362),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 99/223 (45%), Positives = 149/223 (67%), Gaps = 10/223 (4%)

Query  1    MIRVLLADDEPLIRAGVRAVLATDPAITVVAEADDGRAAVRLALEHRPDVALLDIRMPRL  60
            MI V+L DD+++IRAG+R++L  D++I V++EA DGR+A  +    RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAAEELARSAP---GVAVAVLTTFGDDAYVARALDGGAKGFLLKSGDPRELLagvha  117
            DG++A+  L R+ P   +V + VLTTF++D  V  AL +GA GFL KS+D+  L+A+V+A
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  vagggaylaprvaarvlaalDTRPLGRAA---EARARADVLTPRERDVLALVGAGLSNAR  174
            VA G++ L++  A  V++  D R  GR+A   E  AR+  LT RE DV+   + GL N  
Sbjct  119  VAKGDTSLSAGAAKTVVS--DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  175  IARRLNLVEGTVKGHVSTILTRLDLANRVQAAVLAHDAGLVER  217
            IAR L +  +TVK H++  +T+L+  +R Q   +A  +GLV+R
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

924) Sros_0609 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 89/212 (42%), Positives = 141/212 (67%), Gaps = 4/212 (1%)

Query  3    IRVIVADDQEIARTGLVMILDAQPGIEVVGEAADGRRAVELARRLRPDVCLFDIRMPGLD  62
            I V++ DDQ + R+GL  IL+ ++GI V+GEAADGR A  + R  RPDV L D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRSLAGPNVADPLAVVVITTFDLDDYVYaalragargfllKNAGAEMLSQAIHAAA  122
            G+ AT +L +    +++ ++V+TTFD D+ V AALRAGA GFL K+A++E L  A++A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  NGDALIAPSITARLLSAFAGSGPVSPPAKPV---ETLTDREEQILATVARGRTNSEIADE  179
            +GD+ ++++ +  ++S +   G  +     +    TLT+RE +++   ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  FYISLSTVKSHIASLMAKLGARNRVEIAMWAY  211
            ++IS +TVK+H+   M+KL AR+R ++   A+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

925) Snas_3040 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 146/218 (67%), Gaps = 7/218 (3%)

Query  5    VLVVDDQTVVRDGLVLILGLLPdievvgaaadgaeaLRLVDEHHPDVVLMDLRMPRMDGA  64
            V++VDDQ+++R GL  IL   ++I V+G AADG  A+ ++   +PDVVLMDLRMP +DG 
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EATGRIKAAH--PEVQIVVLTTYSDDESVFAALKAGARGYLTKdaggeeiaaaiaavrdg  122
             AT+ ++A      V+I+VLTT+ +DE V+AAL+AGA G+L+K A++E + AA+ AV  G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  123  aaQLAPDVQRRLVDALASGDKTDTSEPAKPPRTDLPDGLTKRESEVLTLIAAGRSNAEIA  182
             + L+++  + +V  L   +++ +++    +RT     LT RE++V+   A G  N  IA
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTA---TLTHRETDVVLGAARGLDNVSIA  178

Query  183  RQLYISEATVKTHINNLFTKAALRDRAQAVTYAYRHGL  220
            R+L+IS ATVKTH+N   TK   RDR+Q V+ A+R GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

926) AMIS_79700 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 144/218 (67%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQELIRTGFTTIINAQSDMEIVGECGDGRAAVDLAArlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+G+  I++ ++++ ++GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAAVPEPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLNGIRTVA  124
            G+ AT  L + +  ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLAPEVTRQLVGRYAARIRPAEGD---PDGGALTPREMEVLRLIAEGLSNSEIAAA  181
             G + L++  ++ +V+    R R+A +    +  ++LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLVT  219
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

927) clvR in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =  100 bits (361),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 130/218 (60%), Gaps = 6/218 (2%)

Query  8    IRVVVVDDQSLVRDGFARIVDAQPDMAAVGVCADGEQAVARVVELRPDVVLMDVRMPVLD  67
            I VV+VDDQ+++R G+  I++ ++++  +G  ADG  A A +   RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLVEGGRAEGTRILGLTTHDTDSYAIRMLRAGAVGFLLKDSTAVQLVDAIRSVH  127
            G+ AT  L  +   ++ RIL LTT D D   +  LRAGA GFL K + +  L+ A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  128  NGTFAASMSTTQRLLERLAVERTAPPDPDTAAL---DVLTDRERVVFTRLVTGASNPEIA  184
            +G  + S ++++ ++  L   R + +  D   +     LT+RE  V      G  N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  185  RDLSIAEVTVKTHVGHILTKLAVRDRVHLVIWAHRRGL  222
            RDL I+  TVKTH+ + +TKL  RDR +LV  A R GL
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

928) Kfla_2364 in NC_013729


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 74/171 (44%), Positives = 110/171 (65%), Gaps = 10/171 (5%)

Query  52   DVVLMDLKMPVLDGVQATARLTADN--PEAAVLVLTTYADDASIAQALRAGARGYLTKDA  109
            DVVLMDL+MP+LDGV ATA L AD       +LVLTT+ +D  +  ALRAGA G+L+K A
Sbjct  48   DVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSA  107

Query  110  GRVEIGAALRATAAGQSTFDPEVARRLVAGLSPAPAGSKD--------GLTARETEVLRL  161
            +   + AA+ A A G++++ +  A+ +V++L     ++ D         LT RET+V+  
Sbjct  108  DSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLG  167

Query  162  IAQGLSNGEIAGLLFIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGIAE  212
             A+GL N  IA  LFI+ ATVKTH+N + +K+ AR+R++ V  A+R G+ +
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

929) MODMU_2653 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 125/194 (65%), Gaps = 6/194 (3%)

Query  32   LVGEATDGDEVPAAVERCSPDVVLMDIRMPRTDGLTATEQLLARP--GAPEVIVLTTFDA  89
            ++GEA+DG    A +    PDVVLMD+RMP  DG+ AT  L A P   A  ++VLTTFD+
Sbjct  28   VIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDG  87

Query  90   DEQVLRALRAGASGFLVKDTPPaaiveavrrvaaGEPMLSPTVTRQLIAHVAAVEPVAPG  149
            DE+VL ALRAGA GFL K + + +++ AV  VA G+  LS+  ++ +++++      ++ 
Sbjct  88   DEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGR-SAT  146

Query  150  DVRLRGARARLDQLSDREREVALAVGRGLSNAQIGAELHLSVATVKAHVSRLLVKLDLAN  209
            DV L    AR   L++RE +V L+ +RGL N  I+ +L +S ATVK+H++R + KL+  +
Sbjct  147  DVELI---ARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARD  203

Query  210  RVQVALLTHDAGVV  223
            R Q+  ++  +G+V
Sbjct  204  RGQLVSIAFRSGLV  217

930) HMPREF9154_2885 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 135/212 (64%), Gaps = 11/212 (5%)

Query  1    MVRVVLIDDDPLVRAGLKLMLGGREGVDFVGEGSDGSEAAALVAEHRPDVLLMDIRMPGK  60
            M+ VVL+DD++++RAGL+ +L +  G+  +GE++DG  A A++   RPDV+LMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATEELMAQKD--APRVVILTTFDSDDSVlralaagaagfllKDTPPDRMLEAIKQV  118
            DG+ AT  L A+ D  A R+++LTTFD+D+ VL AL AGA GFL K + ++ ++ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEHTLSPSVVSQVIAAATRHRGDPRREDARADL----AVLNAREKDVAIAIGRGLTNA  174
            A G+ +LS++    V+ +  R+RG   R  +  +L    A L  RE DV ++ +RGL N 
Sbjct  120  AKGDTSLSAGAAKTVV-SDLRRRG---RSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  175  EISARHYLSLATVKGVVTQIFDKLGLTNRVQV  206
             I+   ++S ATVK  + +   KL   +R Q+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

931) Sros_0508 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.4 bits (358),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 147/217 (68%), Gaps = 7/217 (3%)

Query  1    MIRVLIVDDHPVVRQGLRTFLGLQDDLdvvgeaadgaeavaLVESLAPDVLLLDLKMPVL  60
            MI V++VDD++++R GLR +L  + ++ V+GEAADG  A A++ +  PDV+L+DL+MP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLGTLVRL-AEHGLSP-RVLVLTSVGDREDVAPAMRAGASGFLYKDVDPAALVQAIRAV  118
            DG+G+   L A+ +L++ R+LVLT+ ++ E+V +A+RAGA GFL K  D+ +L+ A+ AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HGGQVLLAPEAAEAMLS-VPAPAPAPAEGRYV---APLTDREREVLTLIASGRSNREIAR  174
              G+  L++ AA +++S +   + ++++   +   A LT+RE +V+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL  211
            +L ++  TVKTH++  + KL  +DR Q    A R+GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

932) Bcav_2710 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 98/218 (45%), Positives = 147/218 (68%), Gaps = 1/218 (0%)

Query  10   IRLLVADDQPTIRLGLRMILDNEPDLTvvaeaddgeaavaaaRELRPDVVLMDVRMPRVD  69
            I +++ DDQ+ IR GLR IL+ ++++ V++EA DG +A A  R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GIQAAARLTADPELAGVRTIVLTTFDDDAYVYgalragaagfllKDVGPDALVDAVRRVH  129
            G+ A+A L ADP+L +VR +VLTTFD+D  V +ALRAGA GFL K  ++++L+ AV  V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  130  AGDSLLDPSVTRRVIERYVEladaapvlpgaaaaaRLTRREHEVLLAVARGSSNREIGAA  189
             GD+ L ++ ++ V+      + +A  +   A +A LT+RE +V+L+ ARG  N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  190  LDVSEATVKSHVRSLLAKLGLASRVQLVIFAYSEGLVS  227
            L +S ATVK+H+   ++KL    R QLV +A+  GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

933) SCD95A.09 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 136/213 (64%), Gaps = 17/213 (7%)

Query  16   ILVCDDHVVVRAGLLALLDSAPGIEVVgeagtgeealalaarltPDVVLMDLQLGAGIDG  75
            +++ DD+ ++RAGL ++L+ A GI V+GEA+ G  A+A+     PDVVLMDL++   +DG
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-LDG  61

Query  76   VETTRRLTAATGAEPARTPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHA  135
            V +T  L A  + ++ R   +LVLTT+D D ++  A+ AGA G+L K+  +E L+AA++A
Sbjct  62   VGATAALRADPDLNAVR---ILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  136  AAQGRTALSGPVAGRVMANLRK------------PRPALTDRERDILAQLATGLGNREIA  183
             A+G T+LS+  A  V+++LR+              ++LT+RE D++   A GL+N  IA
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  184  RALFISEATVKTHLRRIYDKLGVDTRAGAVAVA  216
            R LFIS ATVKTHL R   KL    R+  V++A
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

934) SBI_09176 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 103/221 (47%), Positives = 141/221 (64%), Gaps = 10/221 (4%)

Query  13   VLIADDQTLIRTGFRLILTARgievvgeaadgaeavaaaCELRPDVVLMDIRMPTMDGLE  72
            V++ DDQ++IR+G+R IL   GI V+GEAADG  A A     RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  73   ATRRILRRTPD---CRVLMLTTFDLDHYVYTALSVGASGFLLKDVTPEHLAAAVRLVDTG  129
            AT   LR  PD    R+L+LTTFD D+ V +AL  GA GFL K   +E L AAV  V  G
Sbjct  64   ATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  130  DALLAPSITRRLVE--RFaspsapapaqhadlaalTPRELEVPGLLG--RGLSNAELAVE  185
            D+ L+++ ++ +V   R  + SA      A  A+LT RE +V  +LG  RGL N  +A +
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNVSIARD  180

Query  186  LTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLVRPGD  226
            L +S ATVK+H+ R  +KL  RDR+Q V +A+ +GLV  ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

935) Amir_0601 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 135/219 (62%), Gaps = 5/219 (2%)

Query  1    MIKVVLADDEDLVRSGLRLILSSAGDIDVVAECDDGHLVAELARQHRPHVVLLDIRMRTS  60
            MI VVL DD+ ++R+GLR IL  AG I V++E  DG+    + R  RP+VVL+D+RM   
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLVALRRLRALPD--PPKVAMLTTFDVDEYVSEALRLGASGFLLKDTEPEQLVKAVRDL  118
            DG+ A   LRA PD  + ++ +LTTFD DE V  ALR GA GFL K +++E L+ AV  +
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ARGGAVLDPGVAARVLSAVADGeraaeparrllsslsererevlvlIG--QGMSNAEIGG  176
            A+G++ L +G A  V+S +    R+A     +  + +  +RE  V++G  +G+ N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  TLHLSEATVKGYVSSVLGKIGAVNRVQAALVAYRGGLIA  215
             L +S ATVK  ++  + K+ A +R Q   +A+R+GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

936) Sthe_3241 in NC_013524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 90/221 (41%), Positives = 136/221 (62%), Gaps = 15/221 (6%)

Query  1    MIRILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGT  60
            MI +++VDD++++R GL +ILE + ++ V+GEA+DG  A    R+ +PDVVLMDL MP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVQAIQEIKRIDPN---ARVVVLTAYDTDERILQAVQAGASGYLLKGAPREDIFRAVRV  117
            DGV A   + R DP+    R++VLT++D DE +L A++AGA G+L K+A  E ++ AV  
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VYRGGSLLEPVVAGKLLNRMGDLLRGEPVEE--------ELTARELDVLTLMARGLRNKE  169
            V +G++ L +  A  +++ +    RG +  +         LT RE DV+   ARGL N  
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRR--RGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  170  IAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRGLV  210
            IA +L I+  TVK H N    KL+  +R + VS A++ GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

937) BN6_31940 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/197 (42%), Positives = 127/197 (65%), Gaps = 16/197 (8%)

Query  12   VLVVDDHPVVRFGLTGLLQ-RDFEVVAEAATGEDAVRRAADLRPDVVLMDLQLGAGIDGV  70
            V++VDD++++R GL G+L+  ++ V++EAA G  A     + RPDVVLMDL++   +DGV
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-LDGV  62

Query  71   EATRRVRALPD--PPEVVVLTTYDSDADVVRAVEAGATGYLLKDSPPDELADAVRRAARG  128
             AT  +RA PD  +  ++VLTT+D+D +V+ A+ AGA G+L K + ++ L  AV   A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  129  QTVLSPDIARRLLRTVR------------DPAPAVSRREIEILDHLARGLSNREIARALF  176
            +T LS++ A+ ++  +R              ++++++RE +++   ARGL N  IAR LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  ISEATVKTHLVRIFDKL  193
            IS ATVKTHL R   KL
Sbjct  183  ISPATVKTHLNRAMTKL  199

938) AMIS_79620 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 139/218 (64%), Gaps = 1/218 (0%)

Query  3    IRLLLADDQDMIRTAFRMILGTQPDIEVVAEAADGETAVEQARRLRPDVCLLDIRMPRID  62
            I ++L DDQ MIR+++R IL  +++I V++EAADG +A    R  RPDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATRLLAGPAVRDPLNVLIVTTFDLDEYVYQALRNGACGFLLKDTSPNLLVEAVRAAA  122
            G+ AT  L + +  +++ +L++TTFD DE V  ALR GA GFL K + ++ L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGTTLISPAVTVRLLSHLAprrggepeppepppteplterelAVVRLVAHGHTNDEIAGR  182
             G T +S++ +  ++S+L  R  +  +    + T  LT+RE  VV   A+G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LYVTLSTVKTHLANVQRKLSARNRVEIAAWAWRNDVCS  220
            L+++ +TVKTHL     KL AR+R ++ + A R+++ +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

939) SCATT_45960 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 75/181 (42%), Positives = 115/181 (64%), Gaps = 6/181 (3%)

Query  53   PDVVLMDLRMPRCDGIEATRRIRAEH--PRTQVVVLTTFDDDEWLFPALRAGARGYLTKD  110
            PDVVLMDLRMP  DG+ AT  +RA+      +++VLTTFD+DE +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  111  AGEREILRAVEDVLAGDAGLSPKVQRRLVERLSQapakpaagpgaalpdplpdglTAREA  170
            A+   ++ AVE V  GD++LS+   + +V  L +     + ++      +    LT RE+
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRR----RGRSATDVELIARTATLTHRET  162

Query  171  EVLALVAQGLSNAEIAAELYVSQATVKTHINNLFAKTGVRDRAQAVGYAFRKGIGGTSGQ  230
            +V+   A+GL N  IA +L++S ATVKTH+N   +K   RDR+Q V+ AFR G+   + +
Sbjct  163  DVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

Query  231  A  231
            +
Sbjct  223  P  223

940) SCAT_4605 in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 75/181 (42%), Positives = 115/181 (64%), Gaps = 6/181 (3%)

Query  53   PDVVLMDLRMPRCDGIEATRRIRAEH--PRTQVVVLTTFDDDEWLFPALRAGARGYLTKD  110
            PDVVLMDLRMP  DG+ AT  +RA+      +++VLTTFD+DE +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  111  AGEREILRAVEDVLAGDAGLSPKVQRRLVERLSQapakpaagpgaalpdplpdglTAREA  170
            A+   ++ AVE V  GD++LS+   + +V  L +     + ++      +    LT RE+
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRR----RGRSATDVELIARTATLTHRET  162

Query  171  EVLALVAQGLSNAEIAAELYVSQATVKTHINNLFAKTGVRDRAQAVGYAFRKGIGGTSGQ  230
            +V+   A+GL N  IA +L++S ATVKTH+N   +K   RDR+Q V+ AFR G+   + +
Sbjct  163  DVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

Query  231  A  231
            +
Sbjct  223  P  223

941) Xcel_0606 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 74/171 (44%), Positives = 106/171 (62%), Gaps = 16/171 (9%)

Query  57   PDVVLMDLRMPALDGVGATAQIVG----TGPRVLVLTTYDTDADILRAVEAGATGYLLKD  112
            PDVVLMDLRMP LDGVGATA + +     + R+LVLTT+D D ++L A+ AGA G+L K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  113  TPRDALVRGIRAAAQGQTVLAPTVATRLVGSVR------------ASADRLTPREAQVLA  160
            +  ++L+ ++ A A+G+T L++  A  +V+ +R            A +  LT RE++V+ 
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  161  LVAEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRGWL  211
              A G  N  ++R LFI+ ATVKTHL RA +KL   DR   V+ A R G +
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

942) narP in NC_005085


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 86/205 (42%), Positives = 129/205 (63%), Gaps = 7/205 (3%)

Query  1    MIRVGVVDDQALVRSGVRGLLELTGDIQVVLEAADGAEALERLAGVRPDVLLLDVRMPGM  60
            MI V +VDDQA++R+G+RG+LE +G I+V+ EAADG  A+  + G RPDV+L+D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   SGIDLLRALNDRGCLPPT--ILLTTFDDDEALLAGMRVGARGFLLKDISLERLADAVRRA  118
             G++   AL     L +   ++LTTFD+DE +LA++R GA GFL K    E L  AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGETLFRPGLTERVLDGVRGCG-DFPKLDLPER---LTGREVEVLALMAGGFNNREIAD  174
            A G+T + +G +  V+ ++R  G     ++L  R   LT RE +V+   A G++N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALGPSEGTIKNHVSSILSKLGVRDR  199
             L  S +T+K H++  ++KL  RDR
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDR  204

943) KSE_07270 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 136/216 (63%), Gaps = 10/216 (4%)

Query  18   ILLADDQDDIRSGFRLILDSQPDMTVVGEAADGLRAIEQARLLRPDVLLADVRMPGADGL  77
            ++L DDQ  IR+G+R IL+ ++++ V+GEAADG  A+   R  RPDV+L D+RMP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  78   EVTRVLAGGP----TRVIVVTTFDDDAYVRAALGSGACGFLLKRSGPNLLIEAVRAAMAG  133
              T  L ++P     R++V+TTFD+D  V AAL +GA GFL K ++++ LI AV A   G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  134  DTLISPQITVRLLRDLGHGPAAPRPPQPAE--SAVEPLTEREWEIVELVAQGRTNAEIGA  191
            DT +S+  +  ++ DL +     R++   E  +    LT+RE ++V   A+G  N  I+ 
Sbjct  123  DTSLSAGAAKTVVSDLRR---RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  192  GLFISAGTVKTHLANVQGKLGTRNRVAIAAWAWRTG  227
            +LFIS++TVKTHL     KL +R+R  + + A R+G
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

944) HMPREF9154_1758 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 128/215 (60%), Gaps = 22/215 (10%)

Query  5    LVVVDDHPIVRDGLAGIFALEKDIDVVGQAGSGPEALAVVAERDPDLVLMDLRMPGGDGF  64
            +V+VDD++++R GL GI+  + +I V+G+A+ G  A+AV+    PD+VLMDLRMP  DG 
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   AAIRQLRERG--GRPRVLVLTTYDTERDIRRAMAAGADGYLLKDLPRDQLVAAV------  116
            +A   LR        R+LVLTT+D + ++  A+ AGADG+L K    + L+AAV      
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  117  -RELMNGSPRTHID-------APHGSQL-----SLTDRETDVLALVADGLTNRAVARKLG  163
               L  G+++T +        ++ + +L     +LT+RETDV+   A GL N ++AR L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  164  ISEATVKTHLAHVYTKLGVLDRATAVREAWERGLV  198
            IS ATVKTHL +  TKL   DR+  V  A   GLV
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

945) SFUL_1449 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.6 bits (355),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 130/218 (60%), Gaps = 6/218 (2%)

Query  6    VRVVVADDEEMVRTALRAILgaeegievvgeaatgaeavsvvRALRPDVVLMDVRMPEID  65
            + VV+ DD+ M+R++LR+IL       +   A   +    + R+ RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPILD  60

Query  66   GIRATEQILATLA-DPPRIVVVTTFENDAYVYDALHAGAAGFLLKRSAAEELVQAVRLVA  124
            G+ AT  + A    ++ RI+V+TTF+ D  V  AL+AGA GFL K + +E L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  CGDSLLYPAAVRT----LaaehagrrearapaWVARLTGREADVLRLMAAGLTNAEIAGR  180
             GD+ L ++A +T    L     +  +    A+ A LT RE+DV+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LAVGPATVKSHVAAVLAKTGARDRTQAVIAAYESGFIT  218
            L ++PATVK+H+   ++K  ARDR Q V  A+ SG++ 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

946) AORI_3604 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 145/215 (68%), Gaps = 15/215 (6%)

Query  6    VRVVLVDDEHLVRMALRLIVDGEPDLvvvgeaadgdaavgvvgeQRPDVVLMDVRMPGRD  65
            + VVLVDD+ ++R +LR I++ ++++ V+GEAADG +A +V+   RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLSATEEILGLP--HPPRVLVLTTFDSDEMVLGALRVGALGFLLKDTPPPRILAAIRTVA  123
            G++AT  + + P  ++ R+LVLTTFD+DE VL+ALR GA GFL K + +  ++AA+ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  TGEPALSPAATARLITAATGPHSSDARRASRETARGLL----ATLTDRERETAGAIAEGL  179
             G+ +LS++A+  ++        SD RR +R ++   L    ATLT+RE +   + A GL
Sbjct  121  KGDTSLSAGAAKTVV--------SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  180  SNTDVARKLDITVATVKAHTSSMLAKLGVENRVQI  214
             N  +AR L I+ ATVK+H +  ++KL   +R Q+
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

947) ACPL_3186 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.1 bits (353),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 146/220 (67%), Gaps = 13/220 (5%)

Query  8    VRVIVVDDDALVRAGLTMMLDGAPGIavvgeaadgdevaavvdahapdvvLMDLRMPRVD  67
            + V++VDD+A++RAGL  +L++A GI V+GEAADG    AV+ +  PDVVLMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GITATRRVRGRP--RAPEVIVLTTFDTDDDILHALRAGASGFLLKDTPPARIAEAVRQVA  125
            G+ AT  +R+ P   A  ++VLTTFD D+++L ALRAGA GFL K + +  +  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGEPILSPGITRRLM------DRVAVQAGAYARARNTLAALSPRERDVVVAIGRGRSNTE  179
             G+  LS+G ++ ++      +R A +    AR+    A+L+ RE DVV++ +RG  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDNVS  176

Query  180  IAAALDMTLATVKTHVSHILTKLDLDNRTQIALLAHDAGL  219
            IA  L ++ ATVKTH+++ +TKL+  +R Q+  +A  +GL
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

948) CMN_00658 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.1 bits (353),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 97/227 (43%), Positives = 141/227 (63%), Gaps = 13/227 (5%)

Query  1    MIRVVLVDDQSIVRAGFRVVLETaggievvgeaaggreavelvRRLAPDVVVMDVRMPGG  60
            MI VVLVDDQ+++RAG+R +LE AG   +   A G      + R   PDVV+MD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPIL  59

Query  61   DGIEatraitgadadadadtpgdrpgpaVLVATTFDLDEYVFGALEAGARGFVLKDAEPE  120
            DG+ AT A+ +                 +LV TTFD DE V++AL AGA GF+ K A++E
Sbjct  60   DGVGATAALRADPDLNAVR---------ILVLTTFDGDEEVLAALRAGADGFLAKSADSE  110

Query  121  EFIQAVRALAEGRAALDGVTTRRVMAEFTRR-RAASAVH--PGAEVLTPREQDIVRLLGD  177
             +I AV A+A G ++L + +++ V++++ RR R+A+ V+  + +  LT RE D+V   + 
Sbjct  111  SLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAAR  170

Query  178  GLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL  224
            GL N  I+  L I  +TVK+HL R MTKL +RDR Q V  ++RSGL+
Sbjct  171  GLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

949) AMIS_53850 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 98.1 bits (353),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 131/194 (68%), Gaps = 3/194 (1%)

Query  29   AGLRILVGGSDDIEVVGEAGDGAQAVTAAEAHWPDVILMDIRMPRVDGLVATRRIRGRP-  87
            AGLR ++ +++ I V+GEA+DG  A +   + +PDV+LMD+RMP +DG+ AT  +R+ P 
Sbjct  15   AGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPD  73

Query  88   -NAPQVIVLTTFDVDEYVLEALRGGAGGFLLKDTPPREILEAVRTVASGAATLSPTAIRR  146
             NA +++VLTTFD DE VL ALR+GA+GFL K + +  ++ AV +VA G ++LS+ A + 
Sbjct  74   LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKT  133

Query  147  LIDHVADPaagnrralararlaalTGRETEVAVLVGHGRSNAEIAGDLGMGVPTVKGHVS  206
            ++ ++   + +       AR A+LT RET+V +  ++G  N  IA DL ++ +TVK H++
Sbjct  134  VVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLN  193

Query  207  RLLTKLDLNNRVQI  220
            R +TKL+  +R Q+
Sbjct  194  RAMTKLHARDRGQL  207

950) ML5_1291 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 130/207 (63%), Gaps = 8/207 (3%)

Query  13   LIRVGLRAIVDAQPDLRVVGEAADGAQVPPLVAKLRPRVVLMDVRMPAIDGIQATRRLLA  72
            +IR GLR+I++ ++++RV+GEAADG    +++   RP VVLMD+RMP +DG+ AT  L A
Sbjct  12   MIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRA  70

Query  73   ASA-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRARPAEVVQAIRVVAAGDSLLFPAA  131
             +  ++ R+LV+TTF  DE V  ALRAGA GFL K A +  ++ A+  VA GD+ L ++A
Sbjct  71   DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGA  130

Query  132  IRQLVDTY------grrdgdrlraarltereaevlrlMAAGLSNPEIAARLVVGVETVKT  185
             + +V         +       R+A LT+RE++V+   A GL N  IA  L ++  TVKT
Sbjct  131  AKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  186  HVGNVLAKLGVRDRTQAVVAAYESGFV  212
            H+   ++KL  RDR Q V  A+ SG+V
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLV  217

951) SGR_6946 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 138/213 (65%), Gaps = 11/213 (5%)

Query  8    VRVVIVDDDQLVRMALRLVIDGEPDLTVVAEAADGNAAVIVVDEQRPDVVLMDVRMPGLD  67
            + VV+VDD+ ++R +LR +++ ++++ V++EAADG +A  V+   RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GLGATREILARAAPP----RVLMLTTFDSDDLVlgalragalgFVLKDTPPQRILDAVRA  123
            G+GAT  +  RA P     R+L+LTTFD+D+ VL+ALRAGA GF+ K + ++ ++ AV A
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  124  VADGSPVLSPaatarviaaaTGPLSSHARDSTRRAARERLSALTEREHETARAIADGLGN  183
            VA G   LS+        +  + L  ++R +T      R ++LT+RE +   + A GL+N
Sbjct  119  VAKGDTSLSA----GAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  184  PEIAQRLNISVATVKAHTGSLFSKLAVQNRVQI  216
              IA+ L IS ATVK+H     +KL  ++R Q+
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

952) ACPL_5353 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 144/215 (67%), Gaps = 4/215 (1%)

Query  3    VRVLVADDQEIVRTGLTLILNAQPDIQVIAEAANGYHAVELARRLRPDVCLLDIRMPGVD  62
            + V++ DDQ ++R+GL  IL+ +++I+VI+EAA+G  A  + R  RPDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GITATRELAGPGVADPLAVVVITTFDLDEHVYGALRAGARGFLLKEAGPELLGQavraaa  122
            G+ AT  L +    +++ ++V+TTFD DE+V +ALRAGA GFL K A++E L  AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  agdaiiapavtaRLLGEFARGPHRGASRQ---PAEPLTEREEQVLAAVAGGRTNNEIAAD  179
             GD+ ++++ +  +++++ R  + ++  +    +  LT+RE +V+ + A G  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LHISLSTVKTHVASLMTKLGARNRVEIAMWAYETG  214
            L IS +TVKTH+   MTKL AR+R ++   A+ +G
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

953) Franean1_3835 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 141/219 (65%), Gaps = 10/219 (4%)

Query  5    IKVVVADDHPLIRAGVRAlllslddldlVGEAADGDEAIRIARATRPDVVLMDLHMPGTD  64
            I VV+ DD+++IRAG+R++L   +    +GEAADG  A+ + R++RPDVVLMDL+MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRV-IGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVTATRSI--TAELPDTAVLVVTMVEDDASVFAAMCAGARGYLLKGADQDELRRAITAVA  122
            GV AT ++   ++L    +LV+T  ++D  V+AA+ AGA G+L K+AD + L  A+ AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  HGEAIFGSrvaarvlallaHPPR---EVPF----PQLTDRERQVLDELARGRNNASIARV  175
             G++ +++  A  V++ L +  R   +V +    + LT+RE +V+   ARG +N SIAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  176  LNVSTRTVANHVSTIFAKLQLADRAEAIVRAREAGLGHR  214
            L +S  TV  H++   +KL+  DR++ +  A  +GL +R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

954) Micau_3055 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 142/218 (66%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQALIRTGFTTIIDAQPDMAAVGECGDGRAAVDLAGrlrpdvvvmdvrmpvld  64
            I V++ DDQA+IR+G+  I++ ++++  +GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVA  124
            G+ AT  L +    ++V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGAALLAPEVTRQLVGRYAARIRPAEGT---PADVGLTPRELEVLRLIADGLANSEIAAR  181
             G + L++  ++ +V+    R R+A +    +    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLVT  219
            L IS  TVKT ++R +TKL+ RDR Q V  A+R+GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

955) Sros_4219 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.8 bits (352),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 85/202 (43%), Positives = 131/202 (65%), Gaps = 5/202 (2%)

Query  19   GLSMMLDGIHGIAVVGEAADGDEvpaaadayapdvvLMDLRMPRVDGITATRRLRSRR--  76
            GL  +L++  GI V+GEAADG    A   +  PDVVLMDLRMP +DG+ AT  LR+    
Sbjct  16   GLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL  74

Query  77   HPPEVVVLTTFDADENILHALRAGAAGFLLKDTPPAQIVEAVRRVAAGDPVLSPRITRRL  136
            ++  ++VLTTFD+DE++L ALRAGA GFL K + +  ++ AV  VA GD  LS+  ++ +
Sbjct  75   NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTV  134

Query  137  MD--RaatqagayqraraalatlSPRENEVVLAVARGRTNAEIAVELYMKVTTVKAHVSH  194
            +   R   ++++     A  ATL+ RE +VVL+ ARG  N  IA +L++  +TVK+H+++
Sbjct  135  VSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNR  194

Query  195  ILSKLELDNRTQIALLAHDAGL  216
             ++KL+  +R Q+  +A  +GL
Sbjct  195  AMTKLHARDRGQLVSIAFRSGL  216

956) O3I_032700 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.5 bits (351),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 133/214 (63%), Gaps = 6/214 (2%)

Query  1    MITVLLVDDQRLVRAGLRMLIDATPDLEVIGEaadgaaairsaaELSPDLILMDLRMPGL  60
            MI V+LVDDQ ++RAGLR +++  +++ VIGEAADG +A+       PD++LMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATEQIVGAR--PSAKVLVLTTFDDDEHLFPALAAGAAGYLIKDTEPSELLAAIRRT  118
            DGV+AT  + +     + ++LVLTTFD+DE++++AL AGA G+L K +++  L+AA+   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGDMLFSPNLLRRLVD---RAVATRPEPESPAAQAELTPREREVLSLVGAGWSNQEIAD  175
            A GD  +S+   + +V    R   +  + E  A  A LT RE +V+   + G  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLHLGVTTVKTHVANLMSKTGCDNRVRLAVYAHK  209
             L ++ +TVKTH+   M+K    +R +L   A +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFR  213

957) SCATT_26170 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 152/221 (69%), Gaps = 6/221 (2%)

Query  3    IRVMLVDDQMLLRTGFRMVLQAQPDMevvaeagdgaealdvLRRSEVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L+ ++++ V++EA+DG  A+ V+R S  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICGGAEHAAGTGNPKVLILTTFDLDEYAFAALKAGASGFMLKDVPPAELLAAI  122
            GV AT  + ++++  A     ++L+LTTFD DE  +AAL+AGA GF+ K   +  L+AA+
Sbjct  61   GVGATAALRADPDLNA----VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  123  RAVHSGDAVVAPSTTRRLLDRFAPLLPHTGE-PVSAelgrltererevlllVAQGLSNGE  181
             AV  GD+ +++++++ ++  +      + +  + A  + LT+RE +V+L  A+GL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  182  IARRLVLSEATVKTHVGRILTKLELRDRVQAVVLAYETGLV  222
            IAR L +S ATVKTH+ R +TKL+ RDR Q V +A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

958) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 95/221 (43%), Positives = 152/221 (69%), Gaps = 6/221 (2%)

Query  3    IRVMLVDDQMLLRTGFRMVLQAQPDMevvaeagdgaealdvLRRSEVDVVLMDVRMPKLD  62
            I V+LVDDQ ++R+G+R +L+ ++++ V++EA+DG  A+ V+R S  DVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEATRRICGGAEHAAGTGNPKVLILTTFDLDEYAFAALKAGASGFMLKDVPPAELLAAI  122
            GV AT  + ++++  A     ++L+LTTFD DE  +AAL+AGA GF+ K   +  L+AA+
Sbjct  61   GVGATAALRADPDLNA----VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  123  RAVHSGDAVVAPSTTRRLLDRFAPLLPHTGE-PVSAelgrltererevlllVAQGLSNGE  181
             AV  GD+ +++++++ ++  +      + +  + A  + LT+RE +V+L  A+GL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  182  IARRLVLSEATVKTHVGRILTKLELRDRVQAVVLAYETGLV  222
            IAR L +S ATVKTH+ R +TKL+ RDR Q V +A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

959) CMM_0644 in NC_009480


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 84/186 (46%), Positives = 118/186 (64%), Gaps = 5/186 (2%)

Query  60   AADGLAAGTVIARTAPDVVLMDIRMPVCDGITATAREVARRPDLP---VIVLTTFDADEL  116
            AADG +A +VI  + PDVVLMD+RMP+ DG+ ATA  +   PDL    ++VLTTFD+DE 
Sbjct  32   AADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATA-ALRADPDLNAVRILVLTTFDGDEE  90

Query  117  VLGALRAGARGFLLKDTPPVDLVHAVRQVAAGRSILSPSVLDTVIG-Vaaqrdradrtae  175
            VL+ALRAGA GFL K + +  L+ AV  VA G + LS++   TV++ +  +   A     
Sbjct  91   VLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVEL  150

Query  176  rerFQTLTEREQEVALAIARGWSNARIAADLYLGVATVKTHVGHVLDKLGVEGRVQVAVL  235
              R  TLT+RE +V L+ ARG  N  IA DL+++ ATVKTH+ + + KL   +R Q+  +
Sbjct  151  IARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSI  210

Query  236  VHEAGL  241
               +GL
Sbjct  211  AFRSGL  216

960) Strvi_5269 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 92/208 (45%), Positives = 144/208 (70%), Gaps = 3/208 (1%)

Query  1    MIHVLLVDDDAIVRAGLRLMLGGAPDIevvaeaadgaevaalvaaHRPDVVLMDIRMPGV  60
            MI+V+LVDD+A++RAGLR +L +A +I V++EAADG    A++ + RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTATAEVRARP--GAPEVLVLTTFHTDAHVLRALRGGAAGFLLKDTPPRDIVAAIRTV  118
            DG+ ATA +RA P   A  +LVLTTF+ D +VL ALR+GA GFL K + +  ++AA+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDPVLSPAVTRRLIEQVAGGGQEDrataararlallgererevaravgggrSNAEIAR  178
            A GD  LS++ ++ ++ ++   G+        AR A L +RE +V  + + G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  GLHLALPTVKAHVSRILTRLDLNNRVQI  206
            +L ++ +TVK+H++R +T+L+  +R Q+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

961) B737_1084 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 138/216 (64%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLIRTGLVTIIGAQPGFEVVGECGDGRAAVDLAlrlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I+  ++G+ V+GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G+ AT  L +    ++V++LVLTTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRRLVGRHAARIRPVPGA---APEVPLTPRELEVLRLLAEGLSNSEIAER  181
             G + L +  ++ +V+    R R+  +    A    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

962) RAM_05530 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 138/216 (64%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLIRTGLVTIIGAQPGFEVVGECGDGRAAVDLAlrlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I+  ++G+ V+GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G+ AT  L +    ++V++LVLTTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRRLVGRHAARIRPVPGA---APEVPLTPRELEVLRLLAEGLSNSEIAER  181
             G + L +  ++ +V+    R R+  +    A    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

963) AMES_1083 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 138/216 (64%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLIRTGLVTIIGAQPGFEVVGECGDGRAAVDLAlrlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I+  ++G+ V+GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G+ AT  L +    ++V++LVLTTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRRLVGRHAARIRPVPGA---APEVPLTPRELEVLRLLAEGLSNSEIAER  181
             G + L +  ++ +V+    R R+  +    A    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

964) AMED_1088 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.3 bits (350),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 138/216 (64%), Gaps = 4/216 (1%)

Query  5    IRVLVCDDQMLIRTGLVTIIGAQPGFEVVGECGDGRAAVDLAlrlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I+  ++G+ V+GE +DGR+A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA  124
            G+ AT  L +    ++V++LVLTTF+ DE V  ALRAGA GFL K A ++ L+ ++ +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRRLVGRHAARIRPVPGA---APEVPLTPRELEVLRLLAEGLSNSEIAER  181
             G + L +  ++ +V+    R R+  +    A    LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL  217
            L IS  TVKT ++R +TKL+ RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

965) Micau_3311 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 93/209 (45%), Positives = 138/209 (67%), Gaps = 10/209 (4%)

Query  1    MIRVLLVDDQHLIRAGLRMLCDAQPDLEVVGEADNGRDAVALAARLRPDVVVMDLRMPGV  60
            MI V+LVDDQ +IRAGLR + + ++++ V+GEA +GR A A+    RPDVV+MDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATS--RILADRPATRIMVLTTFGDDDHLYPALTAGACGFllkdappadlldGVRRA  118
            DG+ AT+  R  +D  A RI+VLTTF++D+++ +AL AGA GFL K A +  L+ +V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDSPFSPDVLRRLVERAVHARAGAPR------RTADLTAREQDVLDLVADGLSNTEIA  172
            A GD+++S++  + +V   ++ R+ ++       RTA LT RE DV+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  DRLHIGVTTVKTHITSLMTKTGSANRVRL  201
              L I+ +TVKTH+   MTK  + +R +L
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQL  207

966) ML5_5081 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 93/209 (45%), Positives = 138/209 (67%), Gaps = 10/209 (4%)

Query  1    MIRVLLVDDQHLIRAGLRMLCDAQPDLEVVGEADNGRDAVALAARLRPDVVVMDLRMPGV  60
            MI V+LVDDQ +IRAGLR + + ++++ V+GEA +GR A A+    RPDVV+MDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATS--RILADRPATRIMVLTTFGDDDHLYPALTAGACGFllkdappadlldGVRRA  118
            DG+ AT+  R  +D  A RI+VLTTF++D+++ +AL AGA GFL K A +  L+ +V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDSPFSPDVLRRLVERAVHARAGAPR------RTADLTAREQDVLDLVADGLSNTEIA  172
            A GD+++S++  + +V   ++ R+ ++       RTA LT RE DV+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  173  DRLHIGVTTVKTHITSLMTKTGSANRVRL  201
              L I+ +TVKTH+   MTK  + +R +L
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQL  207

967) SFUL_5176 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 138/207 (67%), Gaps = 5/207 (2%)

Query  3    IRVVVAEDQAAVRAGLVLILSSAPDIEVVGEAGDGEAAVRLARELRPDLVLMDVQMPRLD  62
            I VV+ +DQA +RAGL  IL  A +I V+GEA+DG +A  + R  RPD+VLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVSAT---RQvvaeeladvlvlTTFDLDEYVFGALRAGASGFLLKNTDARDLLEAVRTVA  119
            GV+AT   R     +   +LVLTTFD DE V++ALRAGA GFL K++D+  L+ AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  RGEGLIAPAVTRRLIAEFAGPRTVRaagaadpavldalTRREREVLGCLGEGLSNAEIAL  179
            +G+  ++++ ++ +++++   R   A++    A   +LT+RE +V+   + GL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLR-RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  RLSMAEATVKTHVSRLLAKLGLRSRVQ  206
             L ++ ATVKTH++R ++KL  R R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

968) B005_2385 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 92/216 (43%), Positives = 139/216 (65%), Gaps = 3/216 (1%)

Query  5    IRVLVCDDQVLIRTGLVTIIGAQPDMEVVGECGDGESAVELAErlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I+  ++++ V+GE +DG SA  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRLAGSEVDHPIKVLVVTTFNLDEYVYEALRAGAGGFLLKDAPPDRLLHGIRTVF  124
            G+ AT  L +    +++++LV+TTF+ DE V  ALRAGA+GFL K A ++ L+ ++ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGSALLDPEVTRQLVGKYAARIRPTRDT--IPDDLPLTPRELEVLRLISDGQSNGEIARS  182
             G + L +  ++ +V+    R R++ D   I+    LT RE +V+   + G  N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  183  LFISQETVKTFVSRILTKLGLRDRVQAVVYAYRHGL  218
            LFIS  TVKT ++R +TKL  RDR Q V  A+R GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

969) Sros_6161 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 132/207 (64%), Gaps = 5/207 (2%)

Query  1    MIRVLIVDDERMVCAQLRTILSAAEDLVVVAEAYDGAEAVEAVVRHRPHVVLMDLHMPGV  60
            MI V++VDD+ M+ A LR IL  A ++ V++EA DG  A   +   RP+VVLMDL+MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAAIEHIVRFP--APPKVVVLTTFDRDGYVLRAMSLGAAGFLLKDTPPEDLIGLVRVA  118
            DG++A   +   P   + +++VLTTFD D  VL A+  GA GFL K + +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHTVLSPAATRRLLTA--SAGHGaardralariadltdrEVEVLTCLGEGLSNAKIAR  176
            A G+T LS++A++ +++     G++A+    +AR A LT+RE +V+   + GL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLYLSEATIKSYVSRMLVKLGFSNRTQ  203
             L++S AT+K+ ++R + KL   +R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

970) HMPREF9154_1697 in NC_018142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 137/215 (64%), Gaps = 11/215 (5%)

Query  5    VMIVDDQRATRLGLALMIGKADDLRVIAQAENGQDALDQLAEIERRRTPRPDVVLMDVRM  64
            V++VDDQ   R GL  ++  A+ +RVI++A +G+ A+  +      R +RPDVVLMD+RM
Sbjct  4    VVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVI------RGSRPDVVLMDLRM  56

Query  65   PVLNGIDATAAITRKHP---GVKVLVLTTYDQDDYafgalgagasgfllKDTRTTDLHQA  121
            P+L+G++ATAA+ R +P   +V++LVLTT+D D+  ++AL AGA GFL K + +  L  A
Sbjct  57   PILDGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAA  115

Query  122  LRAVAAGDAILTPRITRQLLERHMPRTTTPRQRAAQERLGLLTPREREVAGLVAQGMTNA  181
            + AVA GD+ L++  ++ ++     R  ++ +     R + LT RE +V    A+G+ N 
Sbjct  116  VEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  182  EIGERLFIQPESVKKTVTRILAKLQLRDRVQLVII  216
             I+  LFI P +VK  + R ++KL+ RDR QLV I
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSI  210

971) AMIS_55260 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 134/208 (65%), Gaps = 6/208 (2%)

Query  1    MIRVLIADDDPLVRVGLSLVLGAGSDLrvvgeagdgaeaveaarrLRPDVVLMDIRMPRM  60
            MI V++ DD++++R GL  +L  ++ +RV+GEA+DG  A    R  RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATAELRRDG--PEPAIVVLTTFDTDEHLLGALRLGANGFLLKDIAPTEILKSVRKA  118
            DG++ATA LR D       I+VLTTFD DE++L+ALR GA+GFL K   +  ++ +V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGESILAPAVVPRLIQHAVGRGTSTGGADPL---AVLTPREREVAEAVATGASNADISR  175
            A G++ L+++    ++ +   RG S+ + + +   A LT RE +V  + A G  N  I+R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  DLHMSVPTVKAYVSRLLEKLRCANRVQV  203
            DL +S +TVK+ ++R + KL+  +R Q+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

972) liaR2 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 97.0 bits (349),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 139/216 (65%), Gaps = 11/216 (5%)

Query  5    IRIGVVDDHPMFRRGLRGLLESVGDTTVVGEAASGEEAVRLAAEHRPDVVLMDLNLPGMS  64
            I + +VDD++M+R GLRG+LE  G   V+GEAA G  A  +    RPDVVLMDL +P + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRQVLRASPDTA---VLVITMVEDDDALVSAIEAGARGYVLKGAGQEELLaavrav  121
            GV AT   LRA PD     +LV+T  ++D+ +++A+ AGA G++ K+A+ E L+AAV AV
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  ssgaavFGRGLTARVLGSVRAGGRPRP-----VSVPGLSDRESEVLRLLADGHDNAVIAR  176
            + G + ++ G +  V++ +R  GR+          + L++RE++V+   A G DN  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLGLTVKTVQNHVSRMLVKLDARNRVEL-ALRFRGA  211
             L ++  TV+ H++R + KL+AR+R +L ++ FR++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

973) BN6_61460 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.8 bits (348),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 94/225 (42%), Positives = 152/225 (68%), Gaps = 13/225 (5%)

Query  4    VRVLLVEDQELVRTGLRMVVDSQPDLTVVGEAADGLAGVREARRLRPDVVLMDVRMPVLD  63
            + V+LV+DQ ++R+GLR +++ ++++ V+GEAADG ++    R  RPDVVLMD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEATRRVVALPGPP-----KVVVLTTYDLDEHalaairagaagfllKDAPAEDLLRALR  118
            G+ AT    AL + P     +++VLTT+D DE+ LAA+RAGA GFL K A +E L+ A+ 
Sbjct  61   GVGAT---AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  119  AVHAGDAVIAASTTRRlldh----lapaldpaavqavaalTGREREVLVAMARGRPNAEI  174
            AV  GD+ ++A++++ ++ +      +A D   +   A+LT RE +V+++ ARG  N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  175  AALLSVAEGTVKTHVGNILAKLHVRNRVQAVVTAYEAGLVRPGDR  219
            A  L ++ +TVKTH+   ++KLH R+R Q V  A+ +GLV  +++
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

974) AMIS_42900 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.8 bits (348),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 127/207 (62%), Gaps = 13/207 (6%)

Query  24   GLTMMLDGAPGLAVVGEADDGDKVPAATDAHHPDVVLMDLRMPRVDGItatrr--lrarp  81
            GL  +L++A G+ V+GEA DG    A   + +PDVVLMDLRMP +DG+ AT      +  
Sbjct  16   GLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDL  74

Query  82   rppEIIVLTTFDTDENILHALRAGASGFLLKDTPPARIAEAIRQVAAGEPILSPRITR--  139
             +  I+VLTTFD DE++L ALRAGA GFL K + +  +  A+  VA G+  LS+  ++  
Sbjct  75   NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTV  134

Query  140  ----RLMDRVSVQAGAYARATAVLAGLSPRERDVVVAIARGRSNAEIGAELDMTLATVKT  195
                R  +R + +    AR+++    L+ RE DVV++ ARG  N  I+ +L ++ ATVKT
Sbjct  135  VSDLRRRGRSATDVELIARTAT----LTHRETDVVLGAARGLDNVSIARDLFISPATVKT  190

Query  196  HVSHVLTKLGLDNRTQIALLAHDAGLV  222
            H+++ +TKL   +R Q+  +A  +GLV
Sbjct  191  HLNRAMTKLHARDRGQLVSIAFRSGLV  217

975) SBI_02965 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 77/168 (46%), Positives = 110/168 (66%), Gaps = 12/168 (7%)

Query  47   RRHRPDVVLMDLRMPGVDGLTAIERIREFADPPV----IVVLTTFDADQYVLRALRAGAT  102
            R  RPDVVLMDLRMP +DG+ A   +R  ADP +    I+VLTTFD+D+ VL ALRAGA 
Sbjct  43   RGSRPDVVLMDLRMPILDGVGATAALR--ADPDLNAVRILVLTTFDGDEEVLAALRAGAD  100

Query  103  GFLIKTTPPEDLIGLVRVAAEGHTVLSPAAARRLVAA-SSDGHSARDRARRLV---ESLT  158
            GFL K++ +E LI+ V   A G+T LS++AA+ +V+     G+SA D    L+    +LT
Sbjct  101  GFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVE--LIARTATLT  158

Query  159  EREAEVLAGLGEGLSNAQIGARLYLSEATIKGYVSRLLDKLGCVNRTQ  206
            +RE++V+ G + GL N  I+  L++S AT+K  ++R + KL   +R Q
Sbjct  159  HRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

976) AMIS_23780 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 125/206 (61%), Gaps = 16/206 (7%)

Query  3    VTVFVVDDQDLVREGITALLGLQPGIEVAGSARDGAEAVAVVPGCRPDVVLMDVRMPEMD  62
            + V +VDDQ ++R G+ ++L  ++GI V G A DG  A AV+ G RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVaataa--lrrllPTCKIVMLTTFDDDEYVTRALKAGAIGYLLKNLPVAELAQAVRLAH  120
            GV+ATAA      L + +I++LTTFD+DE V  AL+AGA G+L K+     L  AV    
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGVAQFDSAVVGRLAAAL-----PAADV--------LTPRETEVLRLISVGASNKEIASR  167
             G + + ++    + + L     +A+DV        LT RET+V+   + G  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  168  LYLSEGTVKNHISRILSRLGLRDRTQ  193
            L++S +TVK H++R +++L  RDR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

977) SCAT_0651 in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 90/216 (42%), Positives = 141/216 (66%), Gaps = 11/216 (5%)

Query  18   VLVVDDDAMVRAGLSMVLSVDPTITvvaeapggaeaviaaTRHRPDVVLMDLQMPEMNGV  77
            V++VDD+AM+RAGL  +L  D+ I V++EA++G  A       RPDVVLMDL+MP ++GV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  78   Eatrr--vraavpsvavLMLTTFHLDTHVLDALRAGASGYLLKDVAPQELCHAIHLAASG  135
             AT      + + +V +L+LTTF+ D +VL ALRAGA G+L K   ++ L  A++  A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  136  ESAFSATITRQLVA---RHTRTANDSA-TAKARQTLAALTDreravaeavaeGASNATIA  191
            ++++SA  ++ +V+   R+ R+A D    A++    A+LT+RE  V  + A G  N +IA
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDNVSIA  178

Query  192  KALFMSEGTVKTHISRALTKTGLDNRVQLALMVFQA  227
            + LF+S +TVKTH++RA+TK    +R QL  + F++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

978) B737_6260 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 141/223 (64%), Gaps = 11/223 (4%)

Query  1    MIPVLVVDDEPMVCAHLRTILGSADDIevvaqaadgaeaveavvRHRPRVVLMDLRMPGV  60
            MI V++VDD++M+ A LR IL  A+ I V+++AADG  A   +   RP VVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAIA--RIaalpdppavvalTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVA  118
            DG+ A A  R  +  ++  ++ LTTFD+D  V+ ALRAGA GFL KS+ +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHTVLSPSAARRLVALSSDSRERGEDARR-----RTAGLTERERDVLACLGSGLSNAD  173
            A G+T LS++AA+ +V   SD R RG  A       RTA LT+RE DV+   + GL N  
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLVAR  216
            IA  L ++ ATVK+ ++R + KL+  +R Q   +A  +GLV R
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

979) RAM_32560 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 141/223 (64%), Gaps = 11/223 (4%)

Query  1    MIPVLVVDDEPMVCAHLRTILGSADDIevvaqaadgaeaveavvRHRPRVVLMDLRMPGV  60
            MI V++VDD++M+ A LR IL  A+ I V+++AADG  A   +   RP VVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAIA--RIaalpdppavvalTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVA  118
            DG+ A A  R  +  ++  ++ LTTFD+D  V+ ALRAGA GFL KS+ +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHTVLSPSAARRLVALSSDSRERGEDARR-----RTAGLTERERDVLACLGSGLSNAD  173
            A G+T LS++AA+ +V   SD R RG  A       RTA LT+RE DV+   + GL N  
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLVAR  216
            IA  L ++ ATVK+ ++R + KL+  +R Q   +A  +GLV R
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

980) AMES_6260 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 141/223 (64%), Gaps = 11/223 (4%)

Query  1    MIPVLVVDDEPMVCAHLRTILGSADDIevvaqaadgaeaveavvRHRPRVVLMDLRMPGV  60
            MI V++VDD++M+ A LR IL  A+ I V+++AADG  A   +   RP VVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAIA--RIaalpdppavvalTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVA  118
            DG+ A A  R  +  ++  ++ LTTFD+D  V+ ALRAGA GFL KS+ +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHTVLSPSAARRLVALSSDSRERGEDARR-----RTAGLTERERDVLACLGSGLSNAD  173
            A G+T LS++AA+ +V   SD R RG  A       RTA LT+RE DV+   + GL N  
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLVAR  216
            IA  L ++ ATVK+ ++R + KL+  +R Q   +A  +GLV R
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

981) AMED_6350 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 101/223 (46%), Positives = 141/223 (64%), Gaps = 11/223 (4%)

Query  1    MIPVLVVDDEPMVCAHLRTILGSADDIevvaqaadgaeaveavvRHRPRVVLMDLRMPGV  60
            MI V++VDD++M+ A LR IL  A+ I V+++AADG  A   +   RP VVLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLTAIA--RIaalpdppavvalTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVA  118
            DG+ A A  R  +  ++  ++ LTTFD+D  V+ ALRAGA GFL KS+ +E LI+ V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ADGHTVLSPSAARRLVALSSDSRERGEDARR-----RTAGLTERERDVLACLGSGLSNAD  173
            A G+T LS++AA+ +V   SD R RG  A       RTA LT+RE DV+   + GL N  
Sbjct  120  AKGDTSLSAGAAKTVV---SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  174  IAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLVAR  216
            IA  L ++ ATVK+ ++R + KL+  +R Q   +A  +GLV R
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

982) KTR9_3513 in NC_018581


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 138/217 (64%), Gaps = 7/217 (3%)

Query  14   IRVLLVDDQELIRTGLRRILRPRDGFDIVGECADGSEVLAGIAEHRPDIVLMDLRMRNVD  73
            I V+LVDDQ +IR+GLR IL    G+ ++GE ADG   +A I   RPD+VLMDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  74   GITATEMVRTLREPPPvlvlttfd--ddvllsralragaagFILKDSPAEALIWAVRAVV  131
            G+ AT  +R+  +  +V +L      +D  +  ALRAGA GF+ K + +E+LI AV AV 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  132  RDGAFLDPAVTERVLQGFRRSGRE----QVTTAAPGLTDRETDVLRLIARGRTNAEIGTA  187
            ++++ L ++ +  V+ ++RR GR     ++ + ++ LT+RETDV+   ARG  N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  188  LGISLVTVKSHVNHIFTKLDLRDRAAAIVYAFDRGLV  224
            L IS  TVK+H+N+  TKL+ RDR+  +  AF  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

983) B005_2431 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.2 bits (346),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 89/220 (41%), Positives = 143/220 (65%), Gaps = 3/220 (1%)

Query  1    MVIVDDDALVRVGLVMMMGGAPDIRVLAEAEDGGRVVDLVERHSPDVVLMDIRMPSVDGL  60
            +V+VDD+A++R GL  ++ +A +IRV++EA DG     ++    PDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   TATESLRALPD--PPEVLVLTTFDADEHVlralragaagfllKDTPPKEIVESVRRVARG  118
             AT +LRA PD  +  +LVLTTFD+DE+VL ALRAGA GFL K + +  ++ +V  VA+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  FPVLSPSVTRRLMDRVADADHSERAGRARSRLAVLNARETDVAVAVGQGRSNADIASRLF  178
               LS++ ++ ++  +   ++S       +R A L  RETDV ++ ++G  N  IA  LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  179  LSVPTVKTHVSNILTKLGLNNRVQIALLVHDAELLDDEQD  218
            +S +TVKTH++  +TKL   +R Q+  +   + L++  ++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

984) Ndas_4254 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.0 bits (345),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 141/217 (65%), Gaps = 6/217 (2%)

Query  12   LVLADDEAMMRAGLRAILSAAPGIevvgeagdgaaavalvaeHRPDIALLDVQMPGTDGL  71
            +VL DD+AM+RAGLR+IL  A GI V+GEA+DG +A A++   RPD+ L+D++MP  DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  72   TATEVISREHP---GTAVVILTTFSEDAYIARALSGGASGFVLKSGDPRQLVEGLRAVAE  128
             AT  + R +P   +  +++LTTF  D  +  AL +GA GF+ KS+D+  L+ ++ AVA 
Sbjct  63   GATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  129  GGAYLSPEVARRVIDELDasggrlsrasaarerVGRLTERERGVLALVGQGCSNDEIARR  188
            G++ LS+  A+ V+ +L    GR +       R + LT+RE +V+   ++G  N  IAR 
Sbjct  122  GDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  189  LAIAPGTVKVHVGSILTRLDVRNRVQAAVVAYEAGLV  225
            L I+P+TVK H+   +T+L+ R+R Q   +A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

985) MLP_53410 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 96.0 bits (345),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 141/206 (69%), Gaps = 10/206 (4%)

Query  1    MVTLILADDHPVFASGLRAVFEAEPDIVVQAVVGTGREAVAAALEHRPDVAVLDIAMPDG  60
            M+ ++L DD++++ +GLR+++E +++I V +  + GR A A     RPDV ++D+ MP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLSVCAELR-QAGL-PTRALMLTMFDDDDNVLAALRCGAFGYTLKGAGPDELvaavrav  118
            DG++  A LR +++L + R L+LT FD+D++VLAALR GA G+  K+A+++ L+AAV AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  arGEVLFGAGIAARMLELF---GRSASTSPF----PQLTDRESEVLGLLAQGLDNAVVAR  171
            A+G+  ++AG A  ++  +   GRSA+   +    + LT+RE++V+   A+GLDN  +AR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  RLGVSAKTVRNHVSNIITKLHVSDRS  197
             L +S+ TV+ H++  +TKLH  DR+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRG  205

986) ML5_5102 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 103/224 (46%), Positives = 149/224 (67%), Gaps = 8/224 (3%)

Query  3    VRVVVADDQELIRAGLRTVLDARPDLSvvgeaadgveavavaTRTRPDVVLMDVRMPRRD  62
            + VV+ DDQ +IRAGLR +L+  +++ V+GEAADG  A AV   +RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATRDLVAAG--NPARVVMLTTFDLDEHVYAALRAGASAFLLKDTRPADlaeavrvva  120
            G++AT  L A    N+ R+++LTTFD DE+V AALRAGA +FL K + +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  rgeallaPTVTRRLLDRYADRLPAPAPAGDVLA---VLTAREREVLTLTARALSNAEIAA  177
            +G++ L++  ++ ++     R   +A   +++A    LT RE +V+  +AR+L N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGLV-RPEPP  220
             L +S ATVKTH++  +TKL  RDR Q V +A+ +GLV R+E P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

987) CE1356 in NC_004369


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 140/218 (65%), Gaps = 4/218 (1%)

Query  5    IRILLVDDQELIRYGFRLVLETEPDLEVVGEAGDGTTARQLASTLRPDVILMDVRMPGID  64
            I ++LVDDQ +IR G+R +LE ++++ V+GEA+DG +A  +    RPDV+LMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIETTRQILTD--LPTTRILVLTTYDRDEfafgalragaagfllKNTRPVELTAAIRTVH  122
            G+ +T  + +D  L + RILVLTT+D DE  ++ALRAGA GFL K++ +  L AA+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDAVVSPRITAKLIEVALPQLNQGVPPTEQDPELDRLTEREREVFVLVGRGYTNPEIAQ  182
             GD+ +S+  +AK +   L +  ++    E  +    LT+RE +V +  +RG  N  IA+
Sbjct  121  KGDTSLSA-GAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  ALHLSESTVKTHFGRVLMKLGLTSRVQAVIRAYELGLV  220
             L +S +TVKTH+ R + KL    R Q V  A+  GLV
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

988) BN6_23280 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 94/219 (43%), Positives = 141/219 (65%), Gaps = 13/219 (5%)

Query  1    MLIADDQEMVRVGFRMILEKQPDITvvadvpdgvaavRTARELEPDVCLLDIRMPGLDGL  60
            +++ DDQ M+R G+R ILE +++I V+++ +DG +A    R   PDV L+D+RMP LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EVTRRLAPTS-----KIVVVTTFDLDEYVHTALENGASGFLTKDAGPALLVESVRAAARG  115
              T  L + +     +I+V+TTFD DE V +AL  GA GFL+K A++  L+ +V A A+G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  116  DALISPGVTVRLLAHFARRGSGTG-------PDALTarerdvvreaarGLTNQEIAARLH  168
            D+ +S+G +  +++++ RRG ++          +LT RE DVV  AARGL N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  169  LSLSTVKTHLASVQTKLGTRNRVEVASWAWRSGLVGRDD  207
            +S +TVKTHL    TKL +R+R ++ S A RSGLV R +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

989) AORI_2574 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 94/206 (46%), Positives = 132/206 (65%), Gaps = 6/206 (2%)

Query  6    IRVLVADDHGAIRAGLMMILGNAEGIEVVGEAADGAIAVRQAKALKPDVVLMDVRMPGVD  65
            I V++ DD++ IRAGL  IL +A GI V+GEAADG  A    ++ +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GIAATRELTAE---GLCEVLVLTTFDLDEYVHaalragaagfllKSVEASRLIEAVKLVA  122
            G++AT  L A+       +LVLTTFD DE V AALRAGA GFL KS ++  LI AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEGVLAPQVTRKLIAAFAAGTREPSAVP--AGLEDLTEREREVLACLGGGLSNAQIGTR  180
             G+  L++  ++ +++ +    R ++ V   A    LT+RE +V+   + GL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  181  LHIGETTVKTHVSRVLTKLGLRSRVQ  206
            L I+ +TVKTH++R +TKL  R R Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

990) Micau_1043 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 87/205 (43%), Positives = 128/205 (63%), Gaps = 8/205 (3%)

Query  15   RVGLRAIVDAQPDLRVVGEAADGAQVPPLVAKLRPRVVLMDVRMPAIDGIQATRRLLAAS  74
            R GLR+I++ ++++RV+GEAADG    +++   RP VVLMD+RMP +DG+ AT  L A +
Sbjct  14   RAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  75   A-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRARPAEVVQAIRVVAAGDSLLFPAAIR  133
              ++ R+LV+TTF  DE V  ALRAGA GFL K A +  ++ A+  VA GD+ L ++A +
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  134  QLVDTY------grrdgdrlraarltereaevlrlMAAGLSNPEIAARLVVGVETVKTHV  187
             +V         +       R+A LT+RE++V+   A GL N  IA  L ++  TVKTH+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  188  GNVLAKLGVRDRTQAVVAAYESGFV  212
               ++KL  RDR Q V  A+ SG+V
Sbjct  193  NRAMTKLHARDRGQLVSIAFRSGLV  217

991) SACE_7262 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 154/223 (70%), Gaps = 6/223 (2%)

Query  1    MARVLLVDDQELMRMGFRMVLESQDDlevvgeagngeeavelaRSLRPDVVLMDVRMPVV  60
            M  V+LVDDQ ++R G+R +LE + ++ V+GEA++G  A  + R+ RPDVVLMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVEATRRIVAE---GSSKVLVMTTFDLDEYalaalrggaggfllKDTPPDGLVTAVRSV  117
            DGV AT  + A+    + ++LV+TTFD DE  LAALR+GA+GFL K + +++L++AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ASGDAVVSPSVTrrlldrflggdggalrdP--GVLDVLTEREREVLVLVAKGLSNAELAS  175
            A GD+ +S++ ++ ++  +   + +A      +    LT+RE +V++  A+GL N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLFLSEATIKTHVGRILSKLDIRDRVQAVVLAYETGLVRPGEK  218
             LF+S AT+KTH+ R ++KL+ RDR Q V +A+ +GLV  +E 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

992) SVEN_5504 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 74/176 (43%), Positives = 114/176 (65%), Gaps = 7/176 (3%)

Query  68   PDVVLMDLRMPRCDGVEATRRIRERH--PGTEIVVLTTYGDDDSLFPALRAGARGYLTKD  125
            PDVVLMDLRMP  DGV AT  +R      +  I+VLTT+++D+ +++ALRAGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  126  AGGEEIVRALRDVTDGRAGLSPAVQRRLLDQLVEGAGRQESPVaaegaaassgDGLTERE  185
            A++E ++ A+  V+ G ++LS++  + ++ +L     R+ +  A++    +    LT+RE
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDL-----RRRGRSATDVELIARTATLTHRE  161

Query  186  TEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRDRAQAVRYAYQHGLV  241
            T+V++  A GL N  IA  L IS ATVKTH+N   +K   RDR+Q V  A++ GLV
Sbjct  162  TDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

993) Deipr_0800 in NC_015161


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 142/218 (66%), Gaps = 8/218 (3%)

Query  5    ITLLLADDHPVVRKGTRELLEAEADLRVLGEASSGAEVVALAAQLRPDIVLMDMSMPDMT  64
            I ++L DD++++R G R +LE +A++RV+GEA+ G    A+    RPD+VLMD+ MP + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVEATRRIKAGQ--GRVSVLVLSSYDDDayvfaaleagaagyllkeaSEDELLRAVRAVA  122
            GV AT  ++A+     V +LVL+++D+D  V+AAL AGA G+L K A  + L+ AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGESVLHPSIARKVMA--RFSAQAPAEMDL---TEDLSPRELEVLRAAARGGSNKEIARA  177
             G++ L ++ A+ V++  R  ++++++++L   T  L+ RE +V+ +AARG  N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LGISPRTVQVHLGNVFSKLNVGSRTEAVLAGIRRGWVD  215
            L ISP TV+ HL    +KL+   R + V  ++R G V+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

994) SCATT_06580 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 85/212 (41%), Positives = 136/212 (65%), Gaps = 3/212 (1%)

Query  1    MLVVDDDAMVRAGLSMVLSVDPTITvvaeapggaeaviaaTRHRPDVVLMDLQMPEMNGV  60
            +++VDD+AM+RAGL  +L  D+ I V++EA++G  A       RPDVVLMDL+MP ++GV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   Eatrr--vraavpsvavLMLTTFHLDTHVLDALRAGASGYLLKDVAPQELCHAIHLAASG  118
             AT      + + +V +L+LTTF+ D +VL ALRAGA G+L K   ++ L  A++  A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  119  ESAFSATITRQLVARHTRTANDSATAKARQTLAALTDreravaeavaeGASNATIAKALF  178
            ++++SA  ++ +V+   R +  ++        A+LT+RE  V  + A G  N +IA+ LF
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  179  MSEGTVKTHISRALTKTGLDNRVQLALMVFQA  210
            +S +TVKTH++RA+TK    +R QL  + F++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

995) CMS_0501 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 76/170 (45%), Positives = 107/170 (63%), Gaps = 3/170 (1%)

Query  70   PDVVLMDIRMPVCDGITATA--REVARRRDLPVIVLTTFDADELVLGALRAGARGFLLKD  127
            PDVVLMD+RMP+ DG+ ATA  R  +    + ++VLTTFD+DE VL+ALRAGA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  128  TPPVDLVQAVRQVAAGRSILSPSVLDTVIG-VaaqrdradrtaererFMTLTEREQEVAL  186
            + +  L+ AV  VA G + LS++   TV++ +  +   A       R  TLT+RE +V L
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  187  AIARGWSNARIAADLFLGVATVKTHVGHVLDKLGVEGRVQVAVLVHEAGL  236
            + ARG  N  IA DLF++ ATVKTH+ + + KL   +R Q+  +   +GL
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

996) KSE_09510 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 93/210 (45%), Positives = 136/210 (65%), Gaps = 9/210 (4%)

Query  1    MIRVLVADDEPLIRAGIRMILTSAEDIEVVGEAPDGaqalrlarelaadvllldIRMPVL  60
            MI V++ DD+++IRAG+R IL  A +I V+GEA+DG  A+ + R   +DV+L+D+RMP+L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLSALAELPRAAP---GTRALVLTTFGERENVLRAITSGGAGFLLKDTAPAELIQAVRA  117
            DG++A A L RA P   + R LVLTTF+  E+VL A+ +G+ GFL K + +  LI AV A
Sbjct  60   DGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  AATGNAFLSPAATRHIVDTLAEGPATARGEQARRRLAVLTARERDVVGLLGE--GLSNAD  175
             A G++ LS++A++ +V  L     +A + +   R A LT RE DVV  LG   GL N  
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV--LGAARGLDNVS  176

Query  176  TGARLRMSEATVKTYVSRILAKLGCENRVQ  205
             +  L +S ATVKT ++R ++KL   +R Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

997) Sros_0232 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 139/208 (67%), Gaps = 14/208 (6%)

Query  3    IRVLVADDHAAVRAGIVLILEGQEDIEVVGQASDGEQAVAMALGLRPDVVLMDIRMPKLD  62
            I V++ DD+A +RAG+  ILE + +I V+G+A+DG  A A+  G RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GISATRELSGIAD-----VLILTTFDIDEYIfgalragaagfllKNTDADALVEAVRVVA  117
            G++AT  L + +D     +L+LTTFD DE +++ALRAGA GFL K++D+++L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  118  RGDGLISPSVTRRLISAFGTAVPERRPQEV------GGLTPREREVLACIGRGMSNAEIS  171
            +GD  +S++ ++ ++S +      R + +V      + LT RE +V+   +RG+ N  I+
Sbjct  121  KGDTSLSAGAAKTVVSDLRR--RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  172  VELDMAEATTKTHVSRLLNKLGLRSRVQ  199
             +L ++ AT KTH++R + KL  R R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

998) ML5_1371 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 89/221 (41%), Positives = 152/221 (69%), Gaps = 7/221 (3%)

Query  5    VRVLIVDDDPLVRGALSMILGGVPDLAVVGEatdgaevpaavaayapdvvLMDIRMPRVD  64
            + V++VDD++++R++L  IL + +++ V+GEA+DG    A + +  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLAATEALRATPE--PPEVLVLTTFDADEQVLRALRAGASGFLLKDTPPaeivaavrrva  122
            G++AT ALRA P+  +  +LVLTTFD+DE+VL ALRAGA GFL K + +  ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  ageaTLSPAVTRKLIAHVTGTAPGASPDPKRERAVRLLDGLSEREREVAVLLGRGRTNAE  182
             G+++LS++ ++ +++++   + +A+      R+      L++RE +V +  +RG  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDNVS  176

Query  183  ISAELFMSVATVKAYVSRLLTKLDLNNRVQVALLVQDAGLV  223
            I+ +LF+S ATVK+ ++R +TKL+  +R Q+  +   +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

999) Micau_3291 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.7 bits (340),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 103/224 (46%), Positives = 149/224 (67%), Gaps = 8/224 (3%)

Query  3    VRVVVADDQELIRAGLRTVLDARPDLSvvgeaadgveavavaTRTRPDVVLMDVRMPRRD  62
            + VV+ DDQ +IRAGLR +L+  +++ V+GEAADG  A AV   +RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAATRDLVAAG--NPARVVMLTTFDLDEHVYAALRAGASAFLLKDTRPADlaeavrvva  120
            G++AT  L A    N+ R+++LTTFD DE+V AALRAGA +FL K + +  L  AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  rgeallaPTVTRRLLDRYADRLPAPAPAGDVLA---VLTAREREVLTLTARALSNAEIAA  177
            +G++ L++  ++ ++     R   +A   +++A    LT RE +V+  +AR+L N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR-GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGLV-RPEPP  220
             L +S ATVKTH++  +TKL  RDR Q V +A+ +GLV R+E P
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

1000) Bcav_3891 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 97/220 (45%), Positives = 138/220 (63%), Gaps = 2/220 (0%)

Query  1    MTRVLLVDDQAVVRAGYAVILASEGLDVVGDAASGREAVQRARELRPDVVVMDVRMPGGD  60
            M  V+LVDDQA++RAG   IL   G+ V+G+AA GR A    R  RPDVV+MD+RMP  D
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GITATRELAGPGAVDPVPVLVVSTFDLDEYVfgaleagaggfllKDAEPevlaaavrrva  120
            G+ AT  L +   +++V +LV++TFD DE V++AL AGA+GFL K A++E L AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  ageglvDSTLTRRVIDEF--arrraprsadpdaLGLLSPRELEIVELLSRGSSNAEIAAA  178
             G+  + +  ++ V+ ++    R A         + L+ RE ++V   +RG  N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVLEPSTVKSHLSRIMTKTATRDRVQLVVWAFTHGVVAPP  218
            L + P+TVK+HL+R MTK  +RDR QLV  AF  G+V  +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

1001) SCAB_7721 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 89/204 (44%), Positives = 134/204 (66%), Gaps = 5/204 (2%)

Query  33   APDIEVVGEAADGLRAVELCHALAPDVVLMDVRMPGIDGIEatar--iaaagpaaRVLVL  90
             ++I V+GEAADG  A  + ++  PDVVLMD+RMP +DG+ ATA     +   A R+LVL
Sbjct  23   DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVL  82

Query  91   TTFPDDTYVWRALRAGASGFLLKRTAPERLIDAVRTVAAGDTLIDPSVTRALVEHFVLGE  150
            TTF +D  V  ALRAGA GFL K + +E LI AV +VA GDT + ++ ++++V ++    
Sbjct  83   TTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDL---R  139

Query  151  RtargpadaadlaglrgltarEAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKI  210
            R +R+++D   +A    LT RE++V+   A GL N  +A  L I+ +T KTH++R + K+
Sbjct  140  RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKL  199

Query  211  GARDRAQAVVLAYRSGLMESGVPP  234
             ARDR+Q V +A+RSGL++ +  P
Sbjct  200  HARDRGQLVSIAFRSGLVNRAEHP  223

1002) Tpau_1410 in NC_014158


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 82/191 (43%), Positives = 113/191 (60%), Gaps = 4/191 (2%)

Query  33   VVGECADGDEVPAAVAESRPDVVLMDLRMKRVSGMEATRRLGERTD--APPVLVLTTFRD  90
            V+GE ADG    A +  SRPDVVLMDLRM  + G+ AT  L    D  A  +LVLTTF +
Sbjct  28   VIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDG  87

Query  91   DDLLSAALRAGVAGFVLKDSPAEELIRAVRLVAAGEAVLDPAVTGRVLQTYRAARQPATT  150
            D+ + AALRAG  GF+ K + +E LI AV  VA G++ L ++ +  V+   R   ++AT 
Sbjct  88   DEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATD  147

Query  151  RA--GAVDPLTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEA  208
                +    LT RE DV+   +RGL N  IA +L IS  TVK+H+    TKL  R+R++ 
Sbjct  148  VELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

Query  209  IVWAFDNGVVA  219
            +  AF +G+V 
Sbjct  208  VSIAFRSGLVN  218

1003) XNR_2780 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.4 bits (339),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 136/212 (65%), Gaps = 15/212 (7%)

Query  14   VRLLLCDDHAVVRAGLRALLSSAPGIevvaeagsgeealalTALHHPDLVLMDLQLGEGI  73
            + ++L DD+A++RAGLR++L  A GI V++EA+ G  A+A+    +PD+VLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  74   GGVETTRRLTTLPD-HPPYVLVLTTYDTDADITRAVEAGATGYLLKAERPEELFTAIRAA  132
            +GV +T  L + PD ++  +LVLTT+D D ++  A+ AGA G+L K+  +E L++A+ A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  133  ASGRTALSPPVAQRVMTHLR------------NPQPELTPRERDILRHLTQGLGNREIAR  180
            A G T+LS+  A+ V+++LR               + LT RE D++   ++GL+N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  181  ALFISEATVKTHLGRIYQKLGVETRAGAVAVG  212
             LFIS ATVKTHL R   KL    R+  V+++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1004) Micau_1125 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 94.1 bits (338),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 89/221 (41%), Positives = 151/221 (69%), Gaps = 7/221 (3%)

Query  5    VRVLIVDDDPLVRGALSMILGGVPDLAVVGEatdgaevpaavaayapdvvLMDIRMPRVD  64
            + V++VDD++++R++L  IL + +++ V+GEA+DG    A + +  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GLAATEALRATPE--PPEVLVLTTFDADEQVLRALRAGASGFLLKDTPPaeivaavrrva  122
            G++AT ALRA P+  +  +LVLTTFD+DE+VL ALRAGA GFL K + +  ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  ageaTLSPAVTRKLIAHVTGTAPVASPDPKRERAVRLLDGLSEREREVAVLLGRGRTNAE  182
             G+++LS++ ++ +++++   +  A+      R+      L++RE +V +  +RG  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART----ATLTHRETDVVLGAARGLDNVS  176

Query  183  ISAELFMSVATVKAYVSRLLTKLDLNNRVQVALLVQDAGLV  223
            I+ +LF+S ATVK+ ++R +TKL+  +R Q+  +   +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1005) PACID_07230 in NC_019395


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.9 bits (337),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 98/221 (45%), Positives = 153/221 (70%), Gaps = 11/221 (4%)

Query  7    IRLLLADDQEMVRVGFRMVLDAQSDMTvvgeaadgaeavglagKLYPNVVLMDIRMPRMD  66
            I ++L DDQ M+R G+R +L+ ++++ V+GEAADG  A ++     P+VVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GLAATRQIIDADP---ATRVLVLTTFDLDEYVHaalragaagfllKDAGPAELLAGIRAV  123
            G++AT   + ADP   A R+LVLTTFD DE V AALRAGA GFL K A++  L+A++ AV
Sbjct  61   GVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  SSGDAVVAPSATRRLLERFLPKDSEAAAPTDPKLI---ETLSDREREVLTLVGQGLTNAE  180
            + GD+ ++++A++ ++  +  ++    ++TD  LI    TL++RE +V+   ++GL N  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGR---SATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  181  IAGTLFLAETTVKTHIGHILTKLGLRDRVQMVITAYDAGLV  221
            IA  LF++ +TVKTH+ + +TKL  RDR Q+V  A+ +GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1006) SACE_5231 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.9 bits (337),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 134/208 (65%), Gaps = 10/208 (4%)

Query  13   IRLVLADDEVMLRRGLRVLLEQGGRIRVVaeagngeellaaVRGHRPDVVLVDVQMPSKD  72
            I +VL DD+ M+R GLR +LE++G IRV++EA++G   +A +RG RPDVVL+D++MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  73   GLSALRDLRAMAAPPIAAV----LTTFDLDDYVAEALRLGANGFLLKDADPAVLVRAVID  128
            G++A   LRA   P + AV    LTTFD D+ V  ALR GA+GFL K AD+  L+ AV  
Sbjct  61   GVGATAALRA--DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  129  LAAGGAVLDPRITARLLPRFRNLGDSADEVRLV---RTLSARERQVLFLLADGRSNADIG  185
            +A G++ L +  +  +++ +R  G SA +V L+    TL+ RE +V++  A G  N  I+
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  186  DRLGLTEATVKSYVSTVLGKLGAENRVQ  213
              L ++ ATVK+ ++  + KL A +R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

1007) Tfu_2233 in NC_007333


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.9 bits (337),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 96/226 (43%), Positives = 150/226 (67%), Gaps = 19/226 (8%)

Query  9    ITVLLVDDDPLVRAGLTIMLGGAPDLRvvgdagdgaqalalvdEHHPDVVLMDIRMPGMD  68
            I V+LVDD++++RAGL  +L +A ++RV+G+A+DG  A+A++   +PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GLTATERLRARR--NAPEVIVLTTFDADQHVlralragaagFLVKDTPPEEIVAAVRQVA  126
            G+ AT  LRA    NA  ++VLTTFD+D++VL ALRAGA GFL K + +E ++AAV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  127  CGNPVLSPTVLRRLIARVADPEADLRRSRARQ--------RLAHLNDREREVAVAVGRGL  178
             G+  LS+   + ++       +DLRR R+R         R A L +RE +V ++ +RGL
Sbjct  121  KGDTSLSAGAAKTVV-------SDLRR-RGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  179  SNAQISAALHLSVPTVKTHVSAILAKFGFTNRVQIALLVHDAGLLD  224
             N  I+  L +S +TVKTH++  ++K+   +R Q+  +   +GL++
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1008) Bcav_0236 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.9 bits (337),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 90/218 (42%), Positives = 147/218 (68%), Gaps = 4/218 (1%)

Query  5    VRVAVVDDEPLVRAGLAAIVDAEPdlgvvgeagdgadvrdLVARTRPDVVLMDVRMPALD  64
            + V +VDD++++RAGL +I++ ++++ V+GEA+DG     ++  +RPDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIaataa--ltrdadaPRVLVVTTFENDDYVLDALRAGASGFLLKRAHPDRIVEAIRVVA  122
            G++ATAA     D +A R+LV+TTF+ D+ VL ALRAGA GFL K A+++ ++ A+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDAVLFPEAVRRLVaaspagatpspadgpHGAAIGRLTereeevlrlvaaGMTNAEIAA  182
            +GD+ L + A + +V+     + ++      + + + LT+RE +V+   A G+ N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIAR  179

Query  183  QLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGFV  220
            +L ++  TVKTH+   ++KL ARDR Q   +A+ SG+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1009) FraEuI1c_5960 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.6 bits (336),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 98/223 (44%), Positives = 150/223 (68%), Gaps = 4/223 (1%)

Query  19   IRVLLADDQPLIRLGFRMFLRAEPGIEVVGEADDGASAVRLARQLRPDVVFMDVRMPGMD  78
            I V+L DDQ++IR G+R +L  ++GI V+GEA DG SA  + R  RPDVV+MD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  79   GIEATAAI-VAARL-PTRVLILTTFDLDQYVYAGLRAGASGFLLKDarpaelaaaahava  136
            G+ ATAA+   + L + R+L+LTTFD D+ V A+LRAGA GFL K A +  L AA +AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  137  ageaviapsatrrlletftpllptpeQadaraatlaaltdrEHDVLLLVAQARTNREIAD  196
             G++ ++++A++ ++  +     ++ +     A  A+LT+RE DV+L  A++  N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATD-VELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  197  ELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLITPSAY  239
            +L +S ATVK H+ R ++KL  RDR Q V++A+ +GL+  +  
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

1010) Franean1_0533 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.6 bits (336),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 147/216 (69%), Gaps = 4/216 (1%)

Query  1    MLLADDDGLVRSGLRALLDAEPDICVaaeaatgeeavlaaRSYRPDVVLMDVRMPRRDGV  60
            ++L DD++++R+GLR++L+ +++I V +EAA G  A    R+ RPDVVLMD+RMP  DGV
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   WATSQITSWPHPRP-RVLVLTTFDVDKVVEdalaagadgfllKRATPEQLIDGIRVVAGG  119
             AT+ + + P+  + R+LVLTTFD D  V  AL AGADGFL K A +E LI ++  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  120  DALVAPavtrrllvtla--rrrvPDRELLTRADQLTDREAEVLRALAEGRSNTEIAAVLN  177
            D+ ++++ ++ ++  L    R   D EL++R+  LT+RE++V+ + A G  N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  178  LSVETVRTHVKRILSKLGVRDRTQAVVWAYRAGFVD  213
            +S  TV+TH++R ++KL  RDR Q V  A+R+G+V+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1011) FraEuI1c_1875 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.6 bits (336),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 128/210 (61%), Gaps = 7/210 (3%)

Query  1    MTTVYLVDDHAMFRAGVRAEL-GGRVEVVGEAATPAEAVAGIAASRPQVVLLDVHMP--D  57
            M  V LVDD+AM+RAG+R+ L ++ + V+GEAA    A A I +SRP+VVL+D++MP  D
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  58   G-GGLAVLRQVGERLPDTRFLVLSVSDAAEDVIALIRAGARGYVTKTISADELADAVERV  116
            G G+ A LR   + L   R+LVL+  D+ E+V+A +RAGA G+++K+  ++ L  AVE V
Sbjct  61   GVGATAALRADPD-LNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  117  AGGDVVFSPRLAGFVLDAFRdasnappaaaaapdadFDQLTPREREVLRLLARGYAYKEI  176
            A GD  +S+  A  V+  +R  + ++      + +    LT RE +V+   ARG     I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIART--ATLTHRETDVVLGAARGLDNVSI  177

Query  177  AAELFISVKTVETHASNVLRKLRLSSRHQL  206
            A +LFIS  TV TH +  + KL+   R QL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQL  207

1012) F750_3984 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.3 bits (335),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 90/212 (43%), Positives = 137/212 (65%), Gaps = 15/212 (7%)

Query  5    VRILLCDDHAVVRagllallggEPDIDVVGEAGSGEEAVALAAQLTPDVVLMDLQLGSGI  64
            + ++L DD+A++RAGL ++L  +++I V+GEA+ G  A A+     PDVVLMDL++ + +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRM-PIL  59

Query  65   DGVEatrr-iatagagaVNVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRAA  123
            DGV AT    A ++  AV +LVLTT+D D ++  A+ AGA G+L K+  +E L+AA+ A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  AQGRTTLSPPVASRVMARMR------------SPRPTLTERELDILGQLSQGLGNRDIAR  171
            A+G T+LS+  A  V++ +R            +  +TLT+RE D++   ++GL+N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  ALFISEATVKTHLGRIYEKLDVDTRAGAVSVA  203
             LFIS ATVKTHL R   KL+   R+  VS+A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1013) SC5A7.17c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.3 bits (335),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 92/221 (42%), Positives = 142/221 (65%), Gaps = 5/221 (2%)

Query  3    VRVVVADDQELVRSGFSMILEAQPDIevvaeagdgaeavaaveRYAPDVLLLDIRMPVMD  62
            + VV+ DDQ ++R+G+  ILE +++I V++EA+DG  A A +    PDV+L+D+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLDAA---RRVCARSACKVVMLTTFDLDEYVYEALYAGASGFLLKDVRRDDLVHAVRVVA  119
            G++A+   R     +A ++++LTTFD DE V  AL AGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  AGDSLLAPAVTrrlvadivrrrreeaaadvTPQRLEVLTAREVETLRLLARGLSNSEIAT  179
             GD+ L+++ ++ +V+D+ RR R  +  ++ + R   LT RE + +   ARGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIA-RTATLTHRETDVVLGAARGLDNVSIAR  179

Query  180  TLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLVAPG  220
             LF+S  TVKTH++  + KL  RDR Q V  A+ +GLV  +
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

1014) Celf_0502 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.3 bits (335),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 92/221 (42%), Positives = 139/221 (63%), Gaps = 10/221 (4%)

Query  7    IRVLLVDDQELFRAGLAVIVDAQDGMRVVGQAGDGLEAVRLADDLEPDVVLMDLRMADMD  66
            I V+LVDDQ ++RAGL  I++ + G+RV+G+A+DG  A  +  +  PDVVLMDLRM+ +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GVEATRQLFlperaarrtrplrvlvltTFDLDDRAAAAIRHGASGFLLKDTTPAMLRDAI  126
            GV AT  L    RA     ++R+LVLTTFD D+   AA+R GA GFL K + +  L  A+
Sbjct  61   GVGATAAL----RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  127  RTVHAGNAVLAPQDLSTLLEG-RFRTPTPAPPGYLA----LSDKEREVFEAVARGLSNTE  181
             +V  G++ L++    T++ + R R  +++    +A    L+++E +V  + ARGL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  182  IAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEHGLV  222
            IA+ ++ S +TVKTH+   + KL  RDR Q+V +A   GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1015) Amir_2225 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 89/202 (45%), Positives = 134/202 (67%), Gaps = 10/202 (4%)

Query  1    MLVADDHAAVRAGLVMILGGAPGVRVVGEAGDGEAAVRMARELRPDVVLMDVRMPGVDGI  60
            +++ DD+A +RAGL  IL +A G+RV+GEA+DG +A  + R  RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATRRLAGVCE-----VLVLTTFDLDEYVrgalragaagfllKSVEAPALVDAVRRVAAG  115
             AT  L +  +     +LVLTTFD DE V +ALRAGA GFL KS ++ +L+ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  116  DGVLAPSVTRRVMREFAAGPAARAKPDL----GALTDREVDVLRCLGEGLSNAQIGTRLR  171
            D  L+++ ++ V+ ++     + +  +L    ++LT+RE DV+   + GL N  I+  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  172  IGETTVKTHVSRVLMKLDLRSR  193
            I+ +TVKTH++R + KL+ R R
Sbjct  183  ISPATVKTHLNRAMTKLHARDR  204

1016) Strop_0395 in NC_009380


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 152/225 (68%), Gaps = 16/225 (7%)

Query  1    MVRVLIVDDDPLVRAALSMIIDGVADLLVVGEatdgaevpaavaayapdvvLMDIRMPRL  60
            M+ V++VDD++++RA+L  I+++ A++ V+GEA+DG    A + +  PDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATEKLRSEP--NAPEVLVLTTFDADEQVlralragaagfllKDTAPAEIVHAIRRV  118
            DG++AT  LR++P  NA  +LVLTTFD+DE+VL ALRAGA GFL K + +  ++ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AVGETMLSPTVTRQLVAHVTGGVGADSRRQRAQ------ERLAMLSEREREVAIALGRGR  172
            A G+T LS+  ++ +V+++        RR R+        R A L++RE +V ++ +RG 
Sbjct  120  AKGDTSLSAGAAKTVVSDL-------RRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  173  SNAEIAGELFMSVATVKAYVSRLLAKLDLNNRVQVALLVHDAGLV  217
             N  IA +LF+S ATVK+ ++R ++KL+  +R Q+  +   +GLV
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1017) SCATT_p13940 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 138/219 (64%), Gaps = 6/219 (2%)

Query  8    IRVLLADDEALIRHGVRLILRHAEGIDVVAEAADGQEAVDLAAVHHPDVALVDIRMPVRD  67
            I V+L DD+A+IR G+R IL +  GI V++EAADG+ A  +    +PDV L+D+RMP+ D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   Glaaiap--llaldpaprvvvlTTFGDEPNVLRALREGAAGFLLKDDGPQELITAVRSAA  125
            G++A A+    +   A R++VLTTF+++ +VL ALR GA GFL K  +++ LI+AV + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGDSVLSPGVTGTVIARMLRSGaaddpaqaaladERVSRLTARERDVLAMLGQGLSNQAI  185
             GD+ LS+G + TV++ + R G    +A       R + LT RE DV+   ++GL N +I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG---RSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  186  ADRLAIGVGTVKTHVGAILDKTGSSTRVQAALLAHRLGL  224
            A  L I+ +TVKTH+   + K  +  R Q   +A R GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1018) SCAT_p0349 in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 93.1 bits (334),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 138/219 (64%), Gaps = 6/219 (2%)

Query  8    IRVLLADDEALIRHGVRLILRHAEGIDVVAEAADGQEAVDLAAVHHPDVALVDIRMPVRD  67
            I V+L DD+A+IR G+R IL +  GI V++EAADG+ A  +    +PDV L+D+RMP+ D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   Glaaiap--llaldpaprvvvlTTFGDEPNVLRALREGAAGFLLKDDGPQELITAVRSAA  125
            G++A A+    +   A R++VLTTF+++ +VL ALR GA GFL K  +++ LI+AV + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGDSVLSPGVTGTVIARMLRSGaaddpaqaaladERVSRLTARERDVLAMLGQGLSNQAI  185
             GD+ LS+G + TV++ + R G    +A       R + LT RE DV+   ++GL N +I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG---RSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  186  ADRLAIGVGTVKTHVGAILDKTGSSTRVQAALLAHRLGL  224
            A  L I+ +TVKTH+   + K  +  R Q   +A R GL
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1019) Caci_5428 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.8 bits (333),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 77/171 (46%), Positives = 108/171 (64%), Gaps = 12/171 (7%)

Query  42   RPDVVLMDLRMPGVDGVEATR--RIAQSAPDVRVVVLTTHADDASILKALRAGATGYLTK  99
            RPDVVLMDLRMP +DGV AT   R       VR++VLTT  +D  +L ALRAGA G+L+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  100  EsgraeiaraieaaasgQSVLDDGVTAILL---------AAAVE-VPASADLTPREAEVL  149
             ++   +  A+EA A G++ L  G +  ++         A+ VE ++ +A LT RE++V+
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV  165

Query  150  TLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGVRDRAQAVRYALRRGL  200
               ARG  N  IA +LF+S+ATVKTH+N   +K+  RDR+Q V  A+R GL
Sbjct  166  LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1020) B005_3218 in NC_018524


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.8 bits (333),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 143/220 (65%), Gaps = 15/220 (6%)

Query  1    MIRVLLVDDHPVVREGIRGMLSTEPDLDIVGDAGSGPEA--VVRAAELAPDVILMDLRMP  58
            MI V+LVDD++++R G+RG+L  ++++ ++G+A+ G  A  V+R++   PDV+LMDLRMP
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSR--PDVVLMDLRMP  57

Query  59   GGDGVEATERIRAAH--PGvhvlvlttydtdtdilRAVEAGATGYLLKDTPRGELAEAVR  116
              DGV AT  +RA     +V++LVLTT+D D ++L A+ AGA G+L K +    L  AV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  117  SAARGETVLSGHLAGKLLTGVRRRSEPEG--------PSLSPREVEVLRLAADGHTNAVI  168
            + A+G+T LS+  A  +++++RRR+ +          ++L+ RE +V+  AA G  N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  169  GRTLHISATTVKTHLMRIYEKLGVGDRTSAVTRALRRGLL  208
            +R L IS++TVKTHL R   KL   DR   V+ A+R GL+
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1021) Sked_17000 in NC_013521


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 99/218 (46%), Positives = 141/218 (65%), Gaps = 15/218 (6%)

Query  1    MIRVLLADDHAAVRAGLRFLLESAADLQVVAEVGDGASAVERARALRPDVVLMDVRMPgt  60
            MI V+L DD+A +RAGLR +LE A+ ++V++E +DG SA    R+ RPDVVLMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   dgitataaitaE-GLAEV--LVLTTFDLDDYVTgalgagaagyllKSAEPHELLDAVRRV  117
            DG+ ATAA+ A+ +L  V  LVLTTFD D+ V +AL AGA G+L KSA+++ L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ADGDGVLAPEVTRRVIRALaaaapasttppastppsepepaKVTRVAGLTPRERDVLAAL  177
            A GD  L++  ++ V+  L   + ++T               ++R A LT RE DV+ + 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVEL-----------IARTATLTHRETDVVLGA  168

Query  178  GRGLTNQQIATELFVSAATAKTHVSRVLMKLGVTSRVQ  215
            +RGL N  IA +LF+S+AT KTH++R + KL    R Q
Sbjct  169  ARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1022) Ndas_4872 in NC_014211


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 87/215 (41%), Positives = 137/215 (64%), Gaps = 7/215 (3%)

Query  21   IRVLLADDQAMVRTGFRYMlaaedgvevvgeagdgleavRLARELRPDVVLMDIRMPGVD  80
            I V+L DDQAM+R+G+R +L   +   +   A++      + R  RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFA-VIRGSRPDVVLMDLRMPILD  60

Query  81   GLEATRRLAGPGVADPLRVVVVTTFDLDEYVHAAITGGAVGFLLKDAGPallveavraaa  140
            G+ AT  L +    +++R++V+TTFD DE V AA+ +GA GFL K A++  L+ AV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  141  rGDALVSPRVTVRLLRHFAAAPRSAPG------DGGLTVRELDIVRAVARGLTNTEVAGE  194
            +GD+ +S+  +  ++ ++    RSA +       + LT RE D+V + ARGL N  +A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  195  LFVTVSTVKTHLASVQAKLGARNRVEVAAWAYRNG  229
            LF++ +TVKTHL    +KL AR+R ++ + A+R+G
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

1023) Ndas_4652 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 93/218 (43%), Positives = 137/218 (63%), Gaps = 4/218 (1%)

Query  5    IRVLVCDDQVLIRTGLVTIIDAQPDLEVAGECGDGAAAVELAErlrpdvvvmdvrmpvld  64
            I V++ DDQ +IR+GL  I++ ++++ V GE +DG +A  +    RPDVV+MD+RMP+LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIEATRRLAGAGVDRPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVS  124
            G+ AT  L +     +V++LV+TTF+ DE V  ALRAGA GFL K A +  L+ ++ +V+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  TGAALLDPEVTRQLVG---RYaarirppdaaaadarLTPRELEVLRLIANGLSNGEIAAS  181
             G + L +  ++ +V+   R +      +  A  A LT RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLVT  219
            LFIS  TVKT ++R +TKL+ RDR Q V  A+R GLV 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1024) GPOL_c05240 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 140/217 (65%), Gaps = 7/217 (3%)

Query  3    VTVVIADDQTVVREGLRSMLSLFDTIEVLGVAASAESALDLVAGTDPDVLLTDLRMPgig  62
            + VV+ DDQ+++R GLR++L     I V+G AA + SA+ ++ G+ PDV+L DLRMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   giegirrlrADGSRTAA--VALTTYDDDTTIVEALDAGAVGFLNKDadpeaieaavlaaa  120
            G+ +   LRAD    A   + LTT+D+D  ++ AL AGA GFL K AD+E++ AAV A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  GGRSMLDEKALRAVLS----HERSaaqaapaeapDGLTEREVEVLGLIAQAMSNQQIAAH  176
             G + L   A ++V+S    + RSA++         LT+RE +V+   A+++ N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LVVGVSTVKTHVNHLLAKTACRDRAALVAYAYRHGLV  213
            L ++ +TVKTH+N+ ++K   RDR+ LV+ A+R GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1025) SC5B8.15 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 69/171 (41%), Positives = 109/171 (64%), Gaps = 2/171 (1%)

Query  56   PDVVLMDLRMPRCDGVEATRRIRSEH--PGTQVVVLTTYADDESLFPALHAGARGYLTKD  113
            PDVVLMDLRMP  DGV AT  +R++    + +++VLTT+ +DE +++AL+AGA G+L+K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  114  AGGDEIVRAVHSVLSGDAGLAPSIQRRllewlseseseprptgppeppDGLTTRETEVLV  173
            A+++ ++ AV++V  GD++L+++  + ++  L      +           LT RET+V++
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  174  LIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV  224
              A GL N  IA  L +S ATVKTH+N   +K   +DR+Q V  A+  GLV
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1026) SCAB_71481 in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 137/217 (64%), Gaps = 12/217 (5%)

Query  5    IKVLLVDDHQVVRRGLRTFLEVQDDIevvgeaadgaegvaraeeLRPDVVLMDVKMPGMD  64
            I V+LVDD+ ++R GLR +LE + +I V+GEAADG  + A     RPDVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVAALRRLR---ELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSV  121
            GV+A   LR   +L N+ R+L++T+F  +  V++ALRAGA G++ K  D+++L +A+ +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  HAGHILLQPEVADALLSQ-----EEANSGQ--GRGGSLTEREKEVLGLIADGRSNREIAR  174
              G+  L +  A +++S+       A   +  +R ++LT+RE +V+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM  211
             L +S  TVKTH++  + KL+  DR Q    A R G+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1027) Sfla_2811 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.0 bits (330),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 90/212 (43%), Positives = 136/212 (65%), Gaps = 15/212 (7%)

Query  5    VRILLCDDHAVVRagllallggEPDIDVVGEAGSGEEAVALAAQLTPDVVLMDLQLGSGI  64
            + ++L DD+A++RAGL ++L  +++I V+GEA+ G  A A+     PDVVLMDL++ + +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRM-PIL  59

Query  65   DGVEatrr-iatagagaVNVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRAA  123
            DGV AT    A ++  AV +LVLTT+D D ++  A+ AGA G+L K+  +E L+AA+ A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  AQGRTTLSPPVASRVMARMR------------SPRPTLTERELDILGQLSQGLGNRDIAR  171
            A+G T+LS+  A  V++ +R            +  +TLT+RE D++   ++GL+N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  ALFISEATVKTHLGRIYEKLGVDTRAGAVSVA  203
             LFIS ATVKTHL R   KL    R+  VS+A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1028) SGR_4841 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 92.0 bits (330),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 137/207 (67%), Gaps = 6/207 (2%)

Query  45   IRVLVADDEPMIRAGVRAVLATDPGIEVVAEAADGREAVELVRAHRPHVAVLDVRMPGTN  104
            I V++ DD++MIRAG+R++L  D+GI V++EAADGR A  ++R+ RP+V ++D+RMP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  105  GLDAAAEIR--RTLPATGVVMLTTFGEDDYILRALGCGAAGFLIKSGEPeelvagvrava  162
            G++A+A +R    L A  +++LTTF+ D+ +L AL  GA GFL KS+++E L+A+V AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  163  egaaYLSPKVAARVVAHLASTgagalagrrdaardrvaglTPREREVLSHLGGGLSNGQI  222
             G + LS+  A  VV++L      + ++       R A LT RE +V+   + GL N  I
Sbjct  121  KGDTSLSAGAAKTVVSDLRRR---GRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  223  ARRLHLVEGTVKAHVSSVLARLGVDNR  249
            AR L +  +TVK+H++  +++L   +R
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDR  204

1029) Sros_3669 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.8 bits (329),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 136/208 (66%), Gaps = 4/208 (1%)

Query  1    MIRVLIVDDEALVRTGLRMIleaaddlevvaeaasgveavtavaRHWPHVVLMDVQMPHM  60
            MI V++VDD+A++R+GLR ILE A+   +   A +        +  +P+VVLMD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRG-SRPDVVLMDLRMPIL  59

Query  61   DGVAALKEINRSP--NPPKVVMLTTFDRDEYVYSALRAKAAGFLLKDTAPRDLIAAVRTV  118
            DGV+A   +   P  N+ ++++LTTFD DE V +ALRA A GFL K + +  LIAAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGSATLAPTVTKRMI-DafagqqapdaraararlaaltdrerQVVQVVARGLANAEIAR  177
            A G ++L++  +K ++ D     +++      AR A+LT+RE +VV   ARGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  ELSMSETTVKAHVSRSLAKLGLANRVQI  205
            +L +S +TVK+H++R+++KL   +R Q+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

1030) YM304_42450 in NC_020520


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.8 bits (329),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 145/215 (68%), Gaps = 4/215 (1%)

Query  3    IRVVIADDQSIIRAGLATILDAQPDIEVVGQAADGREAIDLALRLRPDVCLFDITMPDVD  62
            I VV+ DDQ++IRAGL  IL+ +++I V+G+AADGR A+ +    RPDV L D+ MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GITATRQIagpdvvdpiavvivttFDTDENVYGALQAGARGFllkdappdqlaaalraat  122
            G+ AT  + +   ++++ ++++TTFD DE+V +AL+AGA GFL K A ++ L AA+ A +
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  rgdalIDPAVTARLLDRFAATERAAAPRQPV---DPLTGREEELLISVARGLTNAEIATE  179
            +GD+ + ++ +  ++  +    R+A+  + +     LT RE +++++ ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  HHISASTVKFHLNGLMTKLRARNRVELAMWAYETG  214
              IS++TVK HLN  MTKL+AR+R +L   A+ +G
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

1031) yhcZ in NC_020504


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.5 bits (328),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 136/207 (66%), Gaps = 12/207 (5%)

Query  5    IKVLLVDDHQVVRRGLRTFLEVQDDIevvgeaadgaegvaRTEELRPDVVLMDIKMPGMD  64
            I V+LVDD+ ++R GLR +LE + +I V+GEAADG  + A     RPDVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVDALRKLR---ELNNPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSV  121
            GV+A   LR   +LN + R+L++T+F  +  V++ALRAGA G++ K  D+++L +A+ +V
Sbjct  61   GVGATAALRADPDLN-AVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  HAGHILLQPEVAGALLSQ---EESGPSQ----GRAGSLTEREREVLGLIADGRSNREIAR  174
              G+  L +  A +++S+      ++++    +R+++LT+RE +V+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALVLSEKTVKTHVSNILMKLDLADRTQ  201
             L +S  TVKTH++  + KL+  DR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1032) yxjL in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.0 bits (326),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 97/212 (46%), Positives = 146/212 (69%), Gaps = 6/212 (2%)

Query  1    MIRVLVAEDQSAVRAGLVMILRAAPGIEVAGEAADGEQAVRLARELRPDVVLLDIRMPRL  60
            MI V++ +DQ+ +RAGL  IL   +GI V GEAADG  A  + R  RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVAATGRITSE-GLADV--LVLTTFDLDEYVfgalragaagfllKDTDaaalveavrlv  117
            DGV+AT+ + ++ +L  V  LVLTTFD DE V++ALRAGA GFL K +D+ +L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  arGEGMLAPAVTRRLISAY-AGAHTATEAQ-SARVARLTPREKEVMACVGAGLSNAGIAA  175
            A+G+  L+++ ++ ++S     +++AT+ +  AR A LT RE +V+   + GL N +IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLGMAEATTKTHVSRILAKVEVRGRVQLAVLA  207
             L ++ AT KTH++R ++K++ R+R QL  +A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1033) SVEN_4026 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.0 bits (326),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 73/167 (44%), Positives = 108/167 (65%), Gaps = 16/167 (9%)

Query  48   KPDVVLMDLQLGAGIDGVEATR--RIAP--TGVHVLVLTTYDTDADITRAIEAGATGYLL  103
            +PDVVLMDL++   +DGV AT   R  P   +V++LVLTT+D D ++  A+ AGA G+L 
Sbjct  46   RPDVVLMDLRMPI-LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLA  104

Query  104  KAERPEELFAAIHSAAQGRTALSPPVASRVMD--RMRGAAG---------PSLTDRERDI  152
            K+  +E L+AA+++ A+G T+LS+  A  V+   R RG ++         ++LT+RE D+
Sbjct  105  KSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV  164

Query  153  LGQLGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVA  199
            +   +RGL+N  IAR LFIS ATVKTHL R  +KL    R+  V++A
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1034) senR in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.0 bits (326),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 91/212 (43%), Positives = 138/212 (66%), Gaps = 16/212 (7%)

Query  5    VRLVICDDHAMVRAGLLALLSSDPAIEVVGEASTGEEAVSLAAALRPDVVLMDLQLGEGI  64
            + +V+ DD+AM+RAGL ++L  D++I V+GEA+ G  A ++  + RPDVVLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  65   DGVEATRRILAGP--GASHVLVLttfdtdtdISRAISAGATGYLLKAEKPEELFaairsa  122
            DGV AT  + A+P   A ++LVLTTFD D ++  A+ AGA G+L K+  +E L+AA+ + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  aagrpaLSPPIASRVMAQMR------------SPLPQLTDREQDILDQLGQGLGNKEIAR  170
            A G  +LS+  A  V++++R            +  + LT+RE D++   ++GL+N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  ALFISEATVKTHLGRIYAKLGADTRSGAVAIA  202
             LFIS ATVKTHL R  +KL A  R+  V+IA
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1035) Xcel_3179 in NC_013530


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.0 bits (326),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 92/225 (41%), Positives = 139/225 (62%), Gaps = 8/225 (3%)

Query  7    IRVLIADDNAVVRRGLRMRLNHADGITVVGEASNGRDAVTIARRERAAVVLMDLEMPG-D  65
            I V++ DD+A++R GLR  L++A GI V+GEA++GR A ++ R  R+ VVLMDL MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLKATRAL-AGPGVENPIRVIALTAHAEPAWVIQALESGAVGYLLKH-DLRQVPAAIEAA  123
            G+ AT AL A+P++ N++R++ LT+      V+ AL +GA G+L K  D   + AA+EA 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  124  ARGESPLSAGVAAPVIHEFTR--RRTTDVVADESIGALTPAELAAVRQLTRGRTTNEDIA  181
            A+G+++LSAG A  V+ ++ R  R +TDV      ++LT  E   V   +RG   N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARG-LDNVSIA  178

Query  182  AALVLSVNTVRSQLSSALRKTGLSDRTQLALWGVRRGLDRGGDTP  226
              L +S  TV+++L+ A+ K    DR QL   + R GL   ++ P
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

1036) SFUL_4073 in NC_021177


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 91.0 bits (326),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 69/165 (42%), Positives = 104/165 (64%), Gaps = 14/165 (8%)

Query  57   PDVVLMDLQLG--EGIDGVEATRRIAADGTVHVLVLTTYDTDADITRAIEAGATGYLLKA  114
            PDVVLMDL++   +G+++  A R  +   +V++LVLTT+D D ++  A+ AGA G+L K+
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  115  ERPEELFAAIRSAAQGRTTLSAPVASRVMARMR------------SPRPTLTDRERDILA  162
              +E L+AA+ + A+G T+LSA  A  V++ +R            +  +TLT+RE D++ 
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  163  QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA  207
              ++GL+N  IAR LFIS ATVKTHL R   KL    R+  VS+A
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1037) F750_1349 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.7 bits (325),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 98/227 (44%), Positives = 143/227 (63%), Gaps = 14/227 (6%)

Query  8    VLLADDQTLVRTGFRMILGAHGIDvvgeagngaeavevaRRVRPDVVLMDIRMPEMDGLE  67
            V+L DDQ+++R+G+R IL   GI V+GEA++G  A  V R  RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  68   ATRRILAGSRPAEPVRAGGTPLPGEPRVVILTTFDLDRYVYaalsagasgfllKDVTPEH  127
            AT           ++RA+  P     R+++LTTFD D  V AAL AGA GFL K   +E 
Sbjct  64   AT----------AALRAD--PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSES  111

Query  128  LASAVRTVRTGDALLAPAITRRLVQRFARHG--GDTADLHRDLASLTPRELEVLGLLARG  185
            L +AV +V  GD+ L+++ ++ +V  + R+G  +   +L    A+LT RE +V+   ARG
Sbjct  112  LIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARG  171

Query  186  LSNAELAARLHLAETTVKTHVARVLAKLGLRDRVQAVIVAYETGLVG  232
            L N  +A  L ++ +TVKTH+ R ++KL  RDR Q V +A+ +GLV 
Sbjct  172  LDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1038) AMIS_52860 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.5 bits (324),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 93/207 (45%), Positives = 143/207 (70%), Gaps = 11/207 (5%)

Query  5    VVIVDDHPMFRMGVRSLILSLNglevageaaghaaalevvaaTRPDVVLMDLHLGGDSGV  64
            VV+VDD++M+R G+R+ IL   G+ V GEAA+  +A+ V+ ++RPDVVLMDL++    GV
Sbjct  4    VVLVDDQAMIRAGLRG-ILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   DATADLLRRDP---GARVLVLTMLDDDDSVFAAMRAGARGYLLKNASPEELERAVHAVAN  121
            +ATA L R DP   + R+LVLT +D+D+ V+AA+RAGA G+L K+A +E L  AV+AVA+
Sbjct  63   GATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  122  GDVILSGPVAQRALGFL-----TGARVG-GSPFPELTSRELDVLDLVARGLDNLAVARRL  175
            GD  LS+  A+  ++ L     +++ V   +  + LT RE DV+   ARGLDN+++AR L
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  176  SLSDKTVRNYLSAILAKLRVADRSQVI  202
             +S  TV+  L+  ++KL+  DR+Q++
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLV  208

1039) Bcav_0335 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.5 bits (324),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 93/208 (45%), Positives = 142/208 (69%), Gaps = 6/208 (2%)

Query  5    IRVLLADDHAAIRAGLRLMLEQagdvevvgeaadgaaavTNVRALRPDVVLMDVRMPGTD  64
            I V+L DD+A IRAGLR +LE+AG   +   A + +A    +R+ RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAV-IRGSRPDVVLMDLRMPILD  60

Query  65   GIAATETIVGE-GLADV--VVLTTFDLDEYVfaalragaagfllKTTDAPALLDAVRRVA  121
            G++AT ++ ++ +L  V  +VLTTFD DE V+AALRAGA GFL K++D+ +L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGEGALAPEVTRRVLDAVARGPAPGGSDDPAVPHGLAELTDRERDVLACLGRGLSNAGIA  181
             G+ +L++  ++ V+  + R  + +++D   +++  A LT+RE DV+   +RGL N +IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRR-RGRSATDVELIART-ATLTHRETDVVLGAARGLDNVSIA  178

Query  182  RELVITEATAKTHVSRVLAKLGCSSRVQ  209
            R+L I+ AT KTH++R ++KL    R Q
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQ  206

1040) Sros_5304 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.5 bits (324),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 91/219 (42%), Positives = 145/219 (67%), Gaps = 9/219 (4%)

Query  3    VRVLVADDQALVRGGFRMILEARADLEVVGEAGDGREAVALVERLRPDVVLMDVRMPDVD  62
            + V++ DDQA++R+G+R ILE  A++ V+GEA+DGR A A++   RPDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEATR--RIVASGSPARVVILTTYDVDEAVFAALRAGASAFLLKDvrpaelveavrvva  120
            G+ AT   R  +  ++ R+++LTT+D DE V+AALRAGA +FL K   +  L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  rGDALLAPSVTRRLLDRFASVLPDPAGPPADL----GrlserevevlrlvalalsNAEIA  176
            +GD+ L+++ ++ ++  +     + ++   +L    + L++RE +V+   A +L N  IA
Sbjct  121  KGDTSLSAGAAKTVVSDLRR--RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  177  ERLVLTEATVKTHVSAVLRKLGLRDRVQAVVLAYDVGLV  215
              L ++ ATVKTH++  + KL  RDR Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1041) AMIS_44810 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.2 bits (323),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 87/213 (41%), Positives = 133/213 (63%), Gaps = 16/213 (7%)

Query  6    IRLVVADDHPVVRDGLATMFASAPGFTvvgeaadgaeavRMAQALSPDVILMDLRMPGTD  65
            I +V+ DD++++R GL  ++  A G+ V+GEAADG  A  + ++  PDV+LMDLRMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GLTAITELARAG---NPARVLVLTTYDNDAHVLPAIEAGATGYLLKDSPREDLLRGVRAA  122
            G+ A + L RA+   N+ R+LVLTT+D D +VL+A+ AGA G+L K +  E L+ +V A 
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  ARGETVLSPSVALRLVNRVR-----TPAPQL------LSQRELEVLQLVAAGNTNREAAA  171
            A+G+T LS++ A  +V+ +R     +   +L      L++RE +V+   A G  N   A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  RLFITEATVKSHLLNIYAKLGVSDRAAAVAEAY  204
             LFI+ ATVK+HL    +KL   DR+  V+ A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1042) SC5H4.08 in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 90.2 bits (323),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 141/219 (65%), Gaps = 7/219 (3%)

Query  12   VIRTLVADDQAVVRTGFVNLLNTQEDIEVVAEAEDGAQAVLSAGETRPDLALLDIRMPHK  71
            +I  ++ DDQA++R+G+  +L+ + +I V++EA DG  A      +RPD+ L+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  72   NGIEAAREILAASG-GATKILMLTTFGLDEYVYDalaagaggfllKDATFPELLHAVRVV  130
            +G+ A+  + A ++  A +IL+LTTF+ DE V  AL AGA+GFL K A    L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  AGGNALLSPEITKRLIAEFVHARGSRLP----VPAAGDLTARETEVLTLIARGLSNAEIA  186
            A G++ LS+  +K +++++ + RG        ++ ++ LT RET+V+   ARGL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  187  GRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV  225
              L I+  TVKTH+NR  +KL+ RDR+Q V +A+  GLV
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1043) BN6_10900 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.9 bits (322),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 95/223 (43%), Positives = 147/223 (66%), Gaps = 12/223 (5%)

Query  1    MIRVLLADDEAMIRAGVKAILGTDPDLTVVAEADNGRDAVDLAIAHRPDVALLDVRMPRL  60
            MI V+L DD+AMIRAG+++IL  D+++ V++EA +GR A  +  + RPDV L+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLaaaaeitraapevaVA--VLTTFGDDAYVARALDGGARGFLLKSGNPRELLagvhav  118
            DG++A+A +   +   AV   VLTTF++D  V  AL +GA GFL KS+++  L+A+V+AV
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  agggaYLAPKVAARVLAALGTRPLSRSGAA---RAKTDLLTPREREVLALLGA--GLSNA  173
            A G++ L++  A  V++ L  R  +RS++     A+T  LT RE +V  +LGA  GL N 
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNV  175

Query  174  RIATRLNLVEGTVKGHVSTILTRLDLANRVQAAVLAHEAGLVQ  216
             IA  L +  +TVK H++  +T+L+  +R Q   +A  +GLV+
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1044) SHJG_3252 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.9 bits (322),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 136/207 (66%), Gaps = 12/207 (5%)

Query  5    IKVLLVDDHQVVRRGLRTFLEVQDDIevvgeaadgaegvaraeeLRPDVVLMDVKMPGMD  64
            I V+LVDD+ ++R GLR +LE + +I V+GEAADG  + A     RPDVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIDALRRLR---ELDNPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSV  121
            G++A   LR   +L N+ R+L++T+F  +  V++ALRAGA G++ K  D+++L +A+ +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  HAGHILLQPEVAGALLSQ----DEAGTGQ---GRGGSLTEREREVLGLIADGRSNREIAR  174
              G+  L +  A +++S+    + ++T+    +R ++LT+RE +V+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALVLSEKTVKTHVSNILMKLDLADRTQ  201
             L +S  TVKTH++  + KL+  DR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1045) SHJGH_3017 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.9 bits (322),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 136/207 (66%), Gaps = 12/207 (5%)

Query  5    IKVLLVDDHQVVRRGLRTFLEVQDDIevvgeaadgaegvaraeeLRPDVVLMDVKMPGMD  64
            I V+LVDD+ ++R GLR +LE + +I V+GEAADG  + A     RPDVVLMD++MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GIDALRRLR---ELDNPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSV  121
            G++A   LR   +L N+ R+L++T+F  +  V++ALRAGA G++ K  D+++L +A+ +V
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  HAGHILLQPEVAGALLSQ----DEAGTGQ---GRGGSLTEREREVLGLIADGRSNREIAR  174
              G+  L +  A +++S+    + ++T+    +R ++LT+RE +V+   A G  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  175  ALVLSEKTVKTHVSNILMKLDLADRTQ  201
             L +S  TVKTH++  + KL+  DR Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1046) L083_1790 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.7 bits (321),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 134/209 (65%), Gaps = 10/209 (4%)

Query  1    MIRVLLVDDQQLIRAGLRMLCDAQPDMEVVGEAGNGRDAVLLAERLTPDLIVMDLRMPGL  60
            MI V+LVDDQ +IRAGLR + + ++++ V+GEA++GR A  +     PD+++MDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGITATG--RIVAARPGARVLVLTTFGDDDHLYPALTAGACGFllkdaapadlldGIRRA  118
            DG+ AT+  R  +   + R+LVLTTF++D+++ +AL AGA GFL K A +  L+ ++   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDSAFS----QDVLHRLVQRAVQARAGA--PRSAPGLTARERDVLALVAEGLSNTEIA  172
            A GD+++S    + V+  L +R+  A      +R+A  LT RE DV+   A GL N  IA
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-LTHRETDVVLGAARGLDNVSIA  178

Query  173  GRLHIGVTTVKTHVTSLMTKTGSPNRVRL  201
              L I+ +TVKTH+   MTK  + +R +L
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQL  207

1047) SGR_4042 in NC_010572


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.4 bits (320),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 68/165 (42%), Positives = 103/165 (63%), Gaps = 14/165 (8%)

Query  57   PDVVLMDLQLG--EGIDGVEATRRIAADGTVHVLVLTTYDTDADITRAIEAGATGYLLKA  114
            PDVVLMDL++   +G+++  A R  +   +V++LVLTT+D D ++  A+ AGA G+L K+
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  115  ERPEELFAAIRSAAQGRTTLSAPVASRVMARMR------------SPRPGLTDRERDILA  162
              +E L+AA+ + A+G T+LSA  A  V++ +R            +  + LT+RE D++ 
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  163  QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA  207
              ++GL+N  IAR LFIS ATVKTHL R   KL    R+  VS+A
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1048) SBI_05584 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 98/216 (46%), Positives = 143/216 (67%), Gaps = 5/216 (2%)

Query  7    VVVADDQALVRTGFTMILaadgidvvaeaadgaeaveavRRTRPDVVLMDIRMPDVDGLE  66
            VV+ DDQA++R+G+  IL   GI V++EAADG  A   +R +RPDVVLMD+RMP +DG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  67   ATRRILTGAP--GEPRVIILTTFDLDHFVYaalsagasgfllKDVTPEHLVAAVRMVRSG  124
            AT   L + P     R+++LTTFD D+ V AAL AGA GFL K   +E L+AAV  V  G
Sbjct  64   ATA-ALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  DALLAPAITRRLVERYARRDPDTSALH--RDLAALTPREAEVLRLLAQGLSNAELAARLH  182
            D+ L+++ ++ +V    RR+  ++ ++     A+LT RE++V+   A+GL N  +A  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  183  LSEATVKTHVARILAKLGLRDRVQAVVVAYETGLVS  218
            +S ATVKTH+ R ++KL  RDR Q V +A+ +GLV+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1049) Strvi_4399 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 91/208 (44%), Positives = 144/208 (70%), Gaps = 3/208 (1%)

Query  1    MIRVLLADDDPLVRTGLKMMLRGADGIevvaeaadgaeaaaavgeHEPDVILMDIRMPVM  60
            MI V+L DD++++R+GL+ +L +A GI V++EAADG  A A +    PDV+LMD+RMP++
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATRAL-TRHGTKAPQVIVLTTFDEHRLVLEAMRAGAAGFLAKHTAPEDIVAAVRRA  119
            DG++AT AL +  + +A +++VLTTFD +  VL A+RAGA GFLAK + +E ++AAV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  ARGEPALSPSAARALIEH-AAAGPDDRAEHarqrlalltererevaeavaeglSNTDIGT  178
            A+G+ +LS++AA++++ +    G      +   R A LT+RE +V  + A GL N  I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  RLHLSLGTVKAHLSSALAKLDLDNRVQL  206
             L +S +TVK+HL+ A++KL+  +R QL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

1050) NOCYR_3977 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 124/194 (64%), Gaps = 5/194 (2%)

Query  36   VLTECADGDEVVPAISAEPPDVILMDLRMKRVGGIEATRLVRMRAD--APPVLVLTTFDD  93
            V+ E ADG    + I +  PDV+LMDLRM  ++G+ AT  +R  +D  A  +LVLTTFD+
Sbjct  28   VIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDG  87

Query  94   DQllsgalragaagFILKDSPAEDLIRAVRTVAAGGAWLDPAVTGRVLSAYRT-VRPATP  152
            D+ + +ALRAGA GF+ K + +E LI AV +VA G++ L ++ +  V+S  R   R+AT 
Sbjct  88   DEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATD  147

Query  153  TD--ARLAELTAREYEVLELIGRGRVNSEIARELGISEVTVKSHVGHIFGKLDLRDRAAA  210
             +  AR A LT RE +V+   +RG  N  IAR+L IS  TVK+H+ +   KL+ RDR+  
Sbjct  148  VELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

Query  211  IVFAFDHGVVSPGQ  224
            + +AF  G+V+ ++
Sbjct  208  VSIAFRSGLVNRAE  221

1051) L083_3693 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 65/162 (41%), Positives = 99/162 (62%), Gaps = 3/162 (1%)

Query  1    MPRLDGLAATRRICADPALAGTRVLVLSMFALDEYVYEALHAGASGFLLKDARPEELADA  60
            MP LDG++AT  + ADP L + R+LVL+ F  DE V  AL+AGA GFL K A +E L  A
Sbjct  56   MPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAA  115

Query  61   VRCTRDGESLFAPAILTRLVAHFIAAPRPGRVAPVLRR---LTAREVDVLTLIGTGLSDD  117
            V     G++ ++++    +V+++    R++    ++ R   LT RE DV+   + GL + 
Sbjct  116  VEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  118  EIATALVIAVKTVKSHITHLLAKLAVRDRAQLVIAAYDAGLV  159
             IA  L I+  TVK+H+ + ++KL  RDR+QLV  A+ +GLV
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1052) SCATT_41860 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.9 bits (318),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 96/212 (46%), Positives = 146/212 (69%), Gaps = 6/212 (2%)

Query  3    VIRVLVAEDQSAVRAGLVMILRAAPGIEVAGEAADGEQAVRLARELRPDVVLLDIRMPRL  62
            +I V++ +DQ+ +RAGL  IL   +GI V GEAADG  A  + R  RPDVVL+D+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  63   DGVAATGRITSE-GLADV--LVLTTFDLDEYVfgalragaagfllKDTDaaalveavrlv  119
            DGV+AT+ + ++ +L  V  LVLTTFD DE V++ALRAGA GFL K +D+ +L+ AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  120  arGEGMLAPAVTRRLISAY-AGAHTATEAQ-SARVARLTPREKEVMACVGAGLSNAGIAA  177
            A+G+  L+++ ++ ++S     +++AT+ +  AR A LT RE +V+   + GL N +IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLGMAEATTKTHVSRILAKVEVRGRVQLAVLA  209
             L ++ AT KTH++R ++K++ R+R QL  +A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1053) yfiK in NC_016113


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.9 bits (318),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 140/213 (66%), Gaps = 10/213 (4%)

Query  4    VKLVVVDDQTAVREALAVMLDLNEDVDvvatavngeeavavvaeHRPDVVLMDLNMPVMD  63
            + +V+VDDQ+ +R +L  +L+ + ++ V++ A +G  A AV+   RPDVVLMDL MP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVEATRRIRADRPETE---VVVLTTFEDDESVlaalqagaagYLTKEADRATIVQAVRSA  120
            GV AT  +RAD P+ +   ++VLTTF++DE VLAAL+AGA G+L+K AD  +++ AV + 
Sbjct  61   GVGATAALRAD-PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  ALGQAVLAPEVQRRLLDLATRRPRPAAE-----QVAMLTAREREVLRLIGDGLRNAEIAA  175
            A G++ L++   + ++    RR R+A++     + A LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  RLFISEATVKTHINNLFAKADLSSRAEAVRYAL  208
             LFIS ATVKTH+N   +K +   R++ V  A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1054) Sros_7606 in NC_013595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.6 bits (317),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 144/217 (67%), Gaps = 12/217 (5%)

Query  3    VSVLLADDQAMIRHGLRLVIGTQPDLrvvgeaadgraavaaarrlrpdlvlldIAMPGMT  62
            + V+L DDQAMIR GLR ++  ++++RV+GEAADGR+A A  R  RPD+VL+D+ MP + 
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIAAAHELLAAPD--PPKILMLTTYDTDENLEGALRAGVSGFLLKVSPPEQLFAAIRTAV  120
            G++A+  L A PD  + +IL+LTT+D DE++ +ALRAG  GFL K + +E L+AA+ +  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  SGLATLDPAVTARVMAGY---------VGAPAIPGTVTPREREVLTLIGRGLTNREITAA  171
             G ++L ++ +  V+++          V   A  +T+T RE +V+   +RGL N  I+  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  172  LSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV  208
            L ++ +TV TH+NR ++KLH RDR++ V  A+  GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1055) Strvi_5460 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.6 bits (317),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 91/221 (42%), Positives = 137/221 (62%), Gaps = 6/221 (2%)

Query  3    IRVVVADDQELVRSGFSMILDAQPDieviaeagdgaeaveavRRHAPDVALLDIRMPGMD  62
            I VV+ DDQ ++R+G+  IL+ +++I VI+EA+DG  A   +R   PDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEACRAIGAD---GACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVA  119
            G+ A  A+ AD    A R ++LTTFD+DE V  AL+AGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  RGDSLLAPSVARRLVEQYtratarprrpdprldmltareretlll--larGLSNAEIAAE  177
            +GD+ L+++ A+ +V +  R    +   +      T  +RET ++   ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGLITVGD  218
            L +S  TVKTH+   ++KL  RDR Q V  A+ +GL+  ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

1056) OEM_51920 in NC_021715


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.4 bits (316),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQVLVRSGLRRILRRKDGFVVVAECADGDEVPAAVAEHGPdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ V++E ADG    A +    PDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGTAL----AELTTRELDVLTLIGRGLSNTEIAGE  178
            +GD+ L ++ +  V++  R+ + ++ +  L    A LT RE DV+   +RGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1057) L083_4968 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.1 bits (315),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 92/219 (43%), Positives = 139/219 (64%), Gaps = 8/219 (3%)

Query  1    MIRVLIADDQAMVRTGFGMIIGAQPDMevvgeaadgveavaLARRLKPDVALFDIRMPRM  60
            MI V++ DDQAM+R+G+  I+  ++++ V+GEAADG  A A+ R  +PDV L D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLEALRLLagpgvaepvkvvvvTTFDLDEYVHQALQNGAAGFLLKDSGPALLVEAVRAA  120
            DG+ A   L +    ++V+++V+TTFD DE V  AL+ GA GFL K +++  L+ AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  VSGDALISPSITVRLLEHLSPPVPDGDD-------GGLSPRELDVVKLAARGLTNAEIAQ  173
              GD+ +S++ +  ++ +L      + D       + L+ RE DVV  AARGL N  IA+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  QLFISVGTVKTHLGSVQTKLGARNRVEIAAWAWERRLVS  212
            +LFIS +TVKTHL    TKL AR+R ++ + A    LV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1058) Namu_0523 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.1 bits (315),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 143/219 (66%), Gaps = 12/219 (5%)

Query  10   VVLADDEALVRAGLRMLIDGEPDMQvvgeagdtaavvavvgRTRPDVVLMDVRMPGGGGI  69
            VVL DD+A++RAGLR +++ +++++V+GEA+D  +  AV+  +RPDVVLMD+RMP  +G+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  70   EATRRLAAQS--PQVRVIVLTTFDEDAAIDgalrlgaagfllKTSPPEMLLDAIRRVAAG  127
             AT  L A++    VR++VLTTFD D  + +ALR GA GFL K++ +E L+ A+  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  128  GGQLDPMVVPRVIAGYAAAPRMGERAPELD------RLTPRETEVLQLVARGHNNAEIAA  181
            +  L +     V+++     R G  A +++       LT RET+V+   ARG +N  IA 
Sbjct  123  DTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  182  LLHLGETTVKTHLGRVLDKLGLRDRNKAIAFAYDSGLVT  220
             L ++ +TVKTHL R + KL  RDR + +++A+ SGLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1059) MTES_0839 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.1 bits (315),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 84/204 (42%), Positives = 123/204 (61%), Gaps = 6/204 (2%)

Query  1    MIRVVVVDDEALVRSGFELILGAAPDIQvvaavdgdvavdTIRRERPDVVLLDIRMPGRS  60
            MI VV+VDD+A++R+G+  IL  A    +  A DG  A   IR  RPDVVL+D+RMP   
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GLDILADLRHD-DPRPI-VGILTTFDTDEYIARALHDGASGFLVKDTAPEHLAAMVRTLA  118
            G++  A LR D D  ++ + +LTTFD DE +  AL+ GA GFL K + +E L A V ++A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  119  AGGVVLSPQVSRTLVDGY----TGAPDRDAVRRIALLTDRERDVLSRLPTGESNAEIGRR  174
             G+  LS+  ++T+V +      +A D + + R A LT+RE DV+   + G  N  I+R 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  175  LHLSGATVKDHVSAILSKLSVSTR  198
            L +S ATVK H++  ++KL    R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDR  204

1060) SCATT_p13060 in NC_017585


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 88.1 bits (315),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 89/213 (42%), Positives = 140/213 (66%), Gaps = 10/213 (4%)

Query  1    MKLVVVDDQTAVREALAVMLDLNEDVDvvatavngeeavavvaeHRPDVVLMDLNMPVMD  60
            + +V+VDDQ+ +R +L  +L+ + ++ V++ A +G  A AV+   RPDVVLMDL MP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  61   GVEATRRIRADRPETE---VVVLTTFEDDESVlaalqagaagYLTKEADRATIVQAVRSA  117
            GV AT  +RAD P+ +   ++VLTTF++DE VLAAL+AGA G+L+K AD  +++ AV + 
Sbjct  61   GVGATAALRAD-PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ALGQAVLAPEVQRRLLDLATRRPRPAAE-----QVAMLTAREREVLRLIGDGLRNAEIAA  172
            A G++ L++   + ++    RR R+A++     + A LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  RLFISEATVKTHINNLFAKADLSSRAEAVRYAL  205
             LFIS ATVKTH+N   +K +   R++ V  A+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1061) Snas_5788 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.8 bits (314),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 83/207 (41%), Positives = 135/207 (66%), Gaps = 10/207 (4%)

Query  6    VRVLIVDDQTLMRQGLRKLLEIEPGVTVSGAAASGQEALALLATTTVDVALVDAKMPGMD  65
            + V++VDDQ+++R GLR +LE ++G+ V G AA G+ A+A++  +  DV L+D +MP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVALIRRLAAEH--PSVACVILTTFDDDEYIfgglaagargfllKDTPPDELVTTLRRAA  123
            GV+    L A+    +V  ++LTTFD+DE ++++L AGA GFL K + ++ L++++   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGETVLGSPAAERVVARL-RTDPHGTGLE------ALSAREREVGDLIAQGAHNREIARR  176
             G+T L++ AA  VV+ L R +  +T++E      +L+ RE +V    A+G +N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LFITEGTVKNHVTALLRKLGMRDRTQL  203
            LFI+ +TVK H+   + KL  RDR QL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

1062) Celf_1323 in NC_015514


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.8 bits (314),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 88/202 (44%), Positives = 132/202 (66%), Gaps = 18/202 (8%)

Query  18   TGLRMILGGAPEIELVGEASDGQQGvdvvvrtapdvvLMDVRMPRMDGLAAHRRLR---D  74
            +GLR IL +A  I ++GEA+DG+ +  V+  + PDVVLMD+RMP +DG++A   LR   D
Sbjct  15   AGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPD  73

Query  75   LGSRARVLVLTTFDADDLVLAALRQGAAGFLLKDTPPPDLVAAVRRVALGEPMLSPSVTS  134
            L +  R+LVLTTFD+D+ VLAALR GA GFL K + +  L+AAV  VA G+  LS++ + 
Sbjct  74   LNA-VRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  135  QLIAAVTAAPVPDRPRERARA---LL---ATLTererevaeavgagMSNAEIARTLHLGV  188
             +++ +       R R R+ +   L+   ATLT+RE +V  + + G+ N  IAR L ++ 
Sbjct  133  TVVSDL-------RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISP  185

Query  189  ATVKTHVGNVLAKLDATNRVQI  210
            ATVKTH+   ++KL+A +R Q+
Sbjct  186  ATVKTHLNRAMTKLHARDRGQL  207

1063) XNR_4951 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.8 bits (314),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 149/216 (69%), Gaps = 6/216 (2%)

Query  3    IRLVLADDERMVRTALRAILGAEPDLevvgeaatgaeavsvvRATAPDVVLMDVRMPEVD  62
            I +VL DD+ M+R++LR+IL  ++++ V+GEAA G  A +V+R++ PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIRATERVLAAGGERAPRVLVLTTFENDDHVlaalragaagfllkraEAETLLHAVRVVA  122
            G+ AT  + A  +  A R+LVLTTF+ D++VLAALRAGA GFL K A++E+L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RSDTLLFPSSVRALAL-----AHDprraaeppwaarLTDREREVLHLMATGLTNAEIAAR  177
            ++DT L +++ +++       ++ +      +++A LT+RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL  213
            L ++PATVK+H+   ++K  +RDR Q V  A+ +GL
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1064) Gbro_4528 in NC_013441


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.6 bits (313),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 91/216 (43%), Positives = 135/216 (63%), Gaps = 7/216 (3%)

Query  3    VRVVIADDQTVVREGLRSMlglldtldvvgvAASGEEALELVDETEPDVLLTDLRMPGIG  62
            + VV+ DDQ+++R GLR++L   +   +   AA G  A+ ++  + PDV+L DLRMP ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGE-AADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEAISRLVASG--SSTRAVALTTYDDDATIlaalsagalgflNKDADPETIEAALVSAA  120
            GV A + L A    ++ R + LTT+D+D  +LAAL AGA GFL K AD+E++ AA+ + A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGRSLLDEKALRALMS----RGRSADDPPRRTPPDGLTEREVEVIALIAEGLSNQQIATR  176
             G + L   A ++++S    RGRSA D    +    LT+RE +V+   A GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LVVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL  212
            L +S +TVKTH+N+ ++K   RDR+ LVS AFR  L
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1065) SACE_6626 in NC_009142


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.6 bits (313),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 84/204 (42%), Positives = 129/204 (64%), Gaps = 5/204 (2%)

Query  15   RGGIRLILDLDPDIEVVAEGSDGSVAAELVAMHRPDVVLTDIQMPTVGGLEVTRRLTRLP  74
            R+G+R IL+ D++I V++E++DG  A  ++   RPDVVL D++MP ++G+  T  L   P
Sbjct  14   RAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADP  72

Query  75   DPPAVA--VLTTFDLDEYVYAALQNGAAGFLLKDTPPRDLAAAVHVVARGEAMLSPRITT  132
            D  AV   VLTTFD DE V AAL+ GA GFL K + +  L AAV+ VA+G++ LS+  + 
Sbjct  73   DLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAK  132

Query  133  KLLSTF--SSGataaqaakaRMEELTarerevavavaQGMSNAEIAGNLHMSLSTVKVHI  190
             ++S +   + +++     AR   LT RE +V ++ A+G+ N  IA +L +S +TVK H+
Sbjct  133  TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHL  192

Query  191  GRIMTKLGMANRTQVAILAHDAGL  214
             R MTKL   +R Q+  +A  +GL
Sbjct  193  NRAMTKLHARDRGQLVSIAFRSGL  216

1066) SBI_03773 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.6 bits (313),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 93/207 (45%), Positives = 142/207 (69%), Gaps = 5/207 (2%)

Query  16   IRVVVAEDQLAVRAGLVLILRSAPDIEVVAEAADGEQAVRLARELRPDLVLMDIQMPRLD  75
            I VV+ +DQ  +RAGL  IL   ++I V++EAADG  A  + R  RPD+VLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  76   GVSATREIAAE-QLADV--LILTTFDLDEYVfgalragaagfllKDSDAAGLLAAVRTVA  132
            GV+AT  + A+ +L  V  L+LTTFD DE V++ALRAGA GFL K +D+ +L+AAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  133  SGEGMIAPAVTRRLIAEFARPQYapaaptadpaalasltpREREVLGALGRGLSNAEIAD  192
             G+  ++++ ++ +++++ R +  +A+     A  A+LT RE +V+ + +RGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  193  HLAMAEATVKTHVSRVLGKLGLRSRVQ  219
            +L ++ ATVKTH++R + KL  R R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1067) FraEuI1c_7001 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.3 bits (312),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 91/212 (43%), Positives = 141/212 (67%), Gaps = 4/212 (1%)

Query  9    VRVLVADDQEIVRTGLRMILDAQPGIEVVGEAADGLAAVELARRLRPDVCLFDIRMPGLD  68
            + V++ DDQ ++R+GLR IL+ ++GI V+GEAADG +A  + R  RPDV L D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  69   GIEATARLagpgvadpvavvvITTFDLDEYVYaalragargfllKDAGPDllaqavqaaa  128
            G+ ATA L +    ++V ++V+TTFD DE V AALRAGA GFL K A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  129  SGDALIAPAVTARLLAAFADAGPGRPPRQPV---EPLTGREEQVLAAVARGRTNNEIAAE  185
             GD+ ++++ +  +++ +   G +    + +     LT RE +V+ + ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  186  LYITLSTVKTHVASLMAKLAARNRVEIAIWAY  217
            L+I+ +TVKTH+   M+KL AR+R ++   A+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1068) Snas_4836 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 87.3 bits (312),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 147/209 (71%), Gaps = 13/209 (6%)

Query  1    MIRVLIADDHAAVRAGL-TLICDTAEDLTvvgeaadgveavdKAIQLRPDVVVMDIRMPR  59
            MI V++ DD+A +RAGL  ++ D++  +   +  + +  AV ++   RPDVV+MD+RMP 
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGS--RPDVVLMDLRMPI  58

Query  60   LDGIAATAKLTGVAD-----VLVLTTYGDDSHVFDalaagaagfllKDTDaealvaavre  114
            LDG++ATA L + +D     +LVLTT+++D +V+ AL AGA GFL K +D+E+L+AAV  
Sbjct  59   LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  115  vaaGNGLISPAVTRRLIAEFGRRRPRPGSQADL----SSLTQREIEVLSHIGRGLSNADI  170
            VA G+  +S++ ++ +++++ RRR R++++ +L    ++LT+RE +V+   +RGL N  I
Sbjct  119  VAKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  171  GKDLGMAEATVKTHVSRILSKLELQSRVQ  199
            ++DL ++ ATVKTH++R ++KL+ + R Q
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1069) AORI_0370 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.8 bits (310),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 105/219 (48%), Positives = 145/219 (67%), Gaps = 7/219 (3%)

Query  3    IRVVIADDQSLVRTGLRMILDNADDIdvvgeagdgaeavalvadldpdvvlMDIRMPEMD  62
            I VV+ DDQ+++R+GLR IL++A+ I V+GEA+DG  A A++ +  PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVEataaiaaahrarvlvl---tTFDLDEYVYAALRAGASGFllkdalapdllaGVRVVA  119
            GV ATAA+ A      + +   TTFD DE V AALRAGA GFL K A +  L+A+V  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  SGEATLAPTVTRRL---LDRVVTGLPAAPPDDRLALLTGRENEVLQQLARGLSNAEIAEL  176
             G+++L++  ++ +   L R   +        R A LT RE +V+   ARGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  177  LFLSPGTVKTHVGRILTKLGLRDRVQAVVFAYESGLISR  215
            LF+SP+TVKTH+ R +TKL  RDR Q V +A+ SGL++R
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

1070) Ndas_2489 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.8 bits (310),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 72/169 (43%), Positives = 110/169 (66%), Gaps = 3/169 (1%)

Query  53   PDVVLMDLRMPGTDGVAATERIRSAP--GAPPVLVLTTLDSDRALVRALRAGASGFLLKD  110
            PDVVLMDLRMP  DGV+AT  +R+ P   A  +LVLTT+D+D  ++ ALRAGA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  111  APPDELVEGVLAVHRRRPHLADAATRRLIGLAVGGGDDEARDQarerlsalserereVAL  170
            A ++ L+ +V AV +    L+ +A++ +++     G   +  +   R ++L++RE +V L
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVL  166

Query  171  AVSRGLSNTEIAEDLFMSVSNVKAVVGRVMAKLDAPNRV-LVANAVRDA  218
            + +RGL N  IA DLF+S + VK+ + R M+KL+A +R  LV+ A R +
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSG  215

1071) Cwoe_0366 in NC_013739


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.8 bits (310),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 136/219 (63%), Gaps = 4/219 (1%)

Query  1    MIRVLIADDEALVRSGLRMIVEStddvrvaaeaadgraavteTLAHRPDVVLMDIRMPRL  60
            MI V++ DD+A++R+GLR I+E ++   ++  A +  A      + RPDVVLMD+RMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIR-GSRPDVVLMDLRMPIL  59

Query  61   DGlaatre--laalaaPPRVIVLTTFHLDEYVHDALRAGAAGFLLKDTPPRELLHAIRVV  118
            DG++AT      +   + R++VLTTF+ DE V  ALRAGA GFL K + +  L+ A+  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AGGEAMLSPVVTRRLIETF-ASGRSAQGAlarerlrrltprereVLALVAEGCSNAEAGR  177
            A G++ LS+  ++ ++  +   GRSA +     R   LT RE +V+   A G  N   +R
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  178  RLQMSEATVKTHVSRLLDKLEAANRVQVALVAFDAGLLD  216
             L +S ATVKTH++R + KL+A +R Q+  +AF +GL++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1072) CMN_01212 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.5 bits (309),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 75/166 (46%), Positives = 111/166 (67%), Gaps = 7/166 (4%)

Query  51   RPDVVLMDLRMPGLDGVGATARIREEA--PDVRVLVLTTYETDASILTAIEAGASGYLLK  108
            RPDVVLMDLRMP LDGVGATA +R ++    VR+LVLTT++ D  +L+A+ AGA G+L K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  109  AAPEEEIlagvraaargevalapaiaaalvrq-----varPAAEPVVPTPTLSPRETEVL  163
            +A  E ++A+V A A+G+ +L+++ A ++V +      +    E +  T+TL+ RET+V+
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVV  165

Query  164  ALVAAGRTNARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVTLA  209
               A G  N  IA +L ++PATVKTHL +   KL   DR + V++A
Sbjct  166  LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1073) Krad_2518 in NC_009664


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 92/211 (44%), Positives = 140/211 (67%), Gaps = 7/211 (3%)

Query  5    VLIADDQEMVRAGFALILAAQPGIDVVAQCADGVEALEAARRLRPDVALLDVRMPRLNGL  64
            V++ DDQ M+RAG+  IL  ++GI V+++ ADG  A+   R  RPDV L+D+RMP L+G+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  65   EVTRRLAgpgvldpvrvvvvttfdlDEYVHAALRAGACGFLLKDAGPTLLVEAVRAAAAG  124
              T  L +   L++VR++V+TTFD DE V AALRAGA GFL K A++  L+ AV A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  125  ESLISPAIT---VRLLQRFaaaapapD--SRAGEMLSERELDVVRLVARGGTNAEVGAEL  179
            ++ +S++ +   V  L+R + +A   +  +R++  L++RE DVV   ARG  N  ++ +L
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTAT-LTHRETDVVLGAARGLDNVSIARDL  181

Query  180  FISLGTVKAHLSSVQTKLSARNRVEVAAWAW  210
            FIS +TVK+HL+   TKL AR+R ++ + A 
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1074) chiR in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.3 bits (308),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 89/204 (44%), Positives = 139/204 (69%), Gaps = 5/204 (2%)

Query  1    MLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGERAVALARELRPDLVLMDVQMPRLDGV  60
            +++ +DQ+ +RAGL  IL   ++I V+GEAADG  A A+ R  RPD+VLMD++MP LDGV
Sbjct  4    VVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   SATRQVVAE-GLADV--LVLTTFDLDEYVfgalragaagfllKNTEARDLIEAVRAVGRG  117
            +AT  + A+ +L  V  LVLTTFD DE V++ALRAGA GFL K++++  LI AV AV++G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  118  EGLIAPAVTRRLIAEFAAGPAREPAVD-PAVLDSLTRREREVLGALGAGLSNAEIAGRLD  176
            +  ++++ ++ +++++         V+  A   +LT+RE +V+ + + GL N  IA  L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  177  MAEATVKTHVSRLLGKLDLRSRVQ  200
            ++ ATVKTH++R + KL+ R R Q
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQ  206

1075) narP in NC_013929


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 86.0 bits (307),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 103/217 (48%), Positives = 150/217 (70%), Gaps = 7/217 (3%)

Query  7    VVIADDMALVRTGFRMILaadgmdvvaeaadgveavdavRRTRPDVVLMDIRMPELDGLE  66
            VV+ DD A++R+G+R IL   G+ V++EAADG  A   +R +RPDVVLMD+RMP LDG+ 
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVG  63

Query  67   ATRRILADTG-HAPRVVILTTFDLDRYVYaalsagaagfllKDTTPEHLVAAVRLVRSGD  125
            AT  + AD + +A R+++LTTFD D  V AAL AGA GFL K + +E L+AAV  V  GD
Sbjct  64   ATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGD  123

Query  126  ALLAPAITRRLVERFARQDAPATPRHRDL----AALTPRERDVlrllagglnnaelaDHL  181
            + L+++ ++ +V  + R++ +AT  + +L    A+LT RE DV+   A GL+N  +A +L
Sbjct  124  TSLSAGAAKTVVSDLRRRGRSAT--DVELIARTATLTHRETDVVLGAARGLDNVSIARDL  181

Query  182  GLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGLVS  218
             +S ATVKTH+ R ++KL  RDR Q V +A+R+GLV+
Sbjct  182  FISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1076) BN6_38950 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 85.7 bits (306),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 142/210 (68%), Gaps = 4/210 (1%)

Query  1    MLVADDQEIVRTGLAMILDAQPGITVVGTAEDGRQAVDLARRLRPDVCLFDIRMPVLDGI  60
            +++ DDQ ++R+GL  IL+ ++GI V+G A DGR A  + R  RPDV L D+RMP+LDG+
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  61   EATRLLAGPAVEDPLAVVVITTFDHDEYVYaalragargfllKNagadllaqavhaaadg  120
             AT  L + +  +++ ++V+TTFD DE V AALRAGA GFL K+A+++ L  AV+A A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  121  daliaPSVTARLLADFAATGSATPPVQPV---DPLTDREEQVLAAVARGRTNNEIADELH  177
            D+ ++++ +  +++D+   G ++  V+ +     LT+RE +V+ + ARG  N  IA +L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  178  VTLSTVKSHITNLMTKLGARNRVEIAIWAY  207
            ++ +TVK+H+   MTKL AR+R ++   A+
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1077) SVEN_5323 in NC_018750


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 85.7 bits (306),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 90/217 (42%), Positives = 135/217 (63%), Gaps = 6/217 (2%)

Query  4    IRVVVADDQELVRSGFAMILDAQPDIevvaeagdgaaaveavRRHAPDVALLDIRMPGTD  63
            I VV+ DDQ ++R+G+  IL+ +++I V++EA+DG +A   +R   PDV L+D+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEACRTIGAE---SGCRTVILTTFDTDAYVYEALHAGASGFLLKDVRRDDLVHAVRVVA  120
            G+ A  ++ A+   ++ R ++LTTFD D  V  AL+AGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  121  AGDSLLAPSVARRLVEQYTAGGPRRTAPD--PRLDVltgreretllllarglSNAEIAAE  178
             GD+ L+++ A+ +V +    G   T  +  +R   LT RE + +L  ARGL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGLV  215
            L +S  TVKTH+   ++KL  RDR Q V  A+ +GLV
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1078) Snas_4479 in NC_013947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 85.5 bits (305),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/220 (42%), Positives = 147/220 (67%), Gaps = 4/220 (1%)

Query  7    IKVLLVDDQPLLRTGFRMVLgaeadidiiaeagdgVEAVDLARRLLPDVVLMDIRMPRMD  66
            I V+LVDDQ+++R+G+R +L   +   I   A++   A  + R   PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGR-SAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GVAATKAI-VEAKL-PVRVLILTTFDLDEYVVgalragaagflaKDVPAEDLVAAIRSVS  124
            GV+AT A+  ++ L +VR+L+LTTFD DE V++ALRAGA GFLAK   +E L+AA+ +V+
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  125  SGEAVVAPRILRRLLEKFVDR-LPEPDGATPASlevltererevlilvAKGMSNTEIAKE  183
             G++ +++   + ++  +  R  +  D    A    LT+RE +V++  A+G+ N  IA++
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  184  LTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETGLVKPS  223
            L +S +TVKTH+ + +TKL  RDR Q V +A+ +GLV+ +
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRA  220

1079) SBI_08194 in NC_016582


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 85.5 bits (305),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 129/206 (63%), Gaps = 10/206 (4%)

Query  8    IRVLLVDDHQVVRRGLRTFLEVQDDIevvgeaadgeegvaraeeLRPDVILMDVKMPGTD  67
            I V+LVDD+ ++R GLR +LE + +I V+GEAADG  + A     RPDV+LMD++MP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GVEALRRLRGLD--NPARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVH  125
            GV A   LR+    N+ R+LV+T+F  +  V++ALRAGA G++ K  D+++L +A+ +V 
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGHVLLQPEVALALLSQ-------EEAgggqgrggSLTEREREVLALIADGRSNREIARA  178
             G+  L +  A +++S+              +R ++LT+RE +V+   A G  N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LILSEKTVKTHVSNILMKLDLADRTQ  204
            L++S  TVKTH++  + KL+  DR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

1080) B737_6412 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/223 (42%), Positives = 148/223 (67%), Gaps = 9/223 (4%)

Query  1    MISILLVDDEPLLRLGFRLVLESQPDFTVVGEAADGAAAISRTAELdpdvvvmdvrmpgm  60
            MI ++LVDD++++R G+R +LE ++++ V+GEAADG +A++      PDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   dgIEATREIVRSHPR---SRVLILTTFDIDEYAFPGLKAGASGFLLKNVPPEDLISAIRA  117
            DG+ AT   +R++P     R+L+LTTFD DE  +++L+AGA GFL K+  +E LI+A+ A
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAGGDAVVAPSVTRRLLDAMADRIpdttptgntpttghglerlterelevltKLARGLSN  177
            VA GD+ ++++ ++ ++  +  R   +T     + T+   +R T+  L      ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGA----ARGLDN  174

Query  178  AEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGLV  220
              IA +L +S +TVKTH+ R + KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1081) RAM_33365 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/223 (42%), Positives = 148/223 (67%), Gaps = 9/223 (4%)

Query  1    MISILLVDDEPLLRLGFRLVLESQPDFTVVGEAADGAAAISRTAELdpdvvvmdvrmpgm  60
            MI ++LVDD++++R G+R +LE ++++ V+GEAADG +A++      PDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   dgIEATREIVRSHPR---SRVLILTTFDIDEYAFPGLKAGASGFLLKNVPPEDLISAIRA  117
            DG+ AT   +R++P     R+L+LTTFD DE  +++L+AGA GFL K+  +E LI+A+ A
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAGGDAVVAPSVTRRLLDAMADRIpdttptgntpttghglerlterelevltKLARGLSN  177
            VA GD+ ++++ ++ ++  +  R   +T     + T+   +R T+  L      ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGA----ARGLDN  174

Query  178  AEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGLV  220
              IA +L +S +TVKTH+ R + KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1082) AMES_6412 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/223 (42%), Positives = 148/223 (67%), Gaps = 9/223 (4%)

Query  1    MISILLVDDEPLLRLGFRLVLESQPDFTVVGEAADGAAAISRTAELdpdvvvmdvrmpgm  60
            MI ++LVDD++++R G+R +LE ++++ V+GEAADG +A++      PDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   dgIEATREIVRSHPR---SRVLILTTFDIDEYAFPGLKAGASGFLLKNVPPEDLISAIRA  117
            DG+ AT   +R++P     R+L+LTTFD DE  +++L+AGA GFL K+  +E LI+A+ A
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAGGDAVVAPSVTRRLLDAMADRIpdttptgntpttghglerlterelevltKLARGLSN  177
            VA GD+ ++++ ++ ++  +  R   +T     + T+   +R T+  L      ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGA----ARGLDN  174

Query  178  AEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGLV  220
              IA +L +S +TVKTH+ R + KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1083) AMED_6506 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 92/223 (42%), Positives = 148/223 (67%), Gaps = 9/223 (4%)

Query  1    MISILLVDDEPLLRLGFRLVLESQPDFTVVGEAADGAAAISRTAELdpdvvvmdvrmpgm  60
            MI ++LVDD++++R G+R +LE ++++ V+GEAADG +A++      PDVV+MD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   dgIEATREIVRSHPR---SRVLILTTFDIDEYAFPGLKAGASGFLLKNVPPEDLISAIRA  117
            DG+ AT   +R++P     R+L+LTTFD DE  +++L+AGA GFL K+  +E LI+A+ A
Sbjct  60   DGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  118  VAGGDAVVAPSVTRRLLDAMADRIpdttptgntpttghglerlterelevltKLARGLSN  177
            VA GD+ ++++ ++ ++  +  R   +T     + T+   +R T+  L      ARGL N
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGA----ARGLDN  174

Query  178  AEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGLV  220
              IA +L +S +TVKTH+ R + KL+ RDR Q V +A+  GLV
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1084) KSE_09570 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 91/221 (42%), Positives = 141/221 (64%), Gaps = 7/221 (3%)

Query  4    IRVLVADDEALLRLAFDTVLGTQPDLLPVGGAADGTEAVRLARELRPDVVLMDVRMPGTD  63
            I V++ DD+A++R ++  +L  ++++  +G AADG  A  + R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GIEAAR--RIVRECPGTKVLILTTFDLDEYafaglaagasgfllKNTRPEQLLAAIRDVA  121
            G+ A+   R   +  + ++L+LTTFD DE  +A+L AGA GFL K++ +E L+AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGDAVLSPRITRRLLEDVRPHLPAApdhrdhrdlpdpSARLSAREHEVLVQVGRGLSNae  181
             GD+ LS+  ++ ++ D+R +  +A D          +A L+ RE +V++  +RGL N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR----TATLTHRETDVVLGAARGLDNVS  176

Query  182  iaaalhlaeaTVKSHLGRILPKLGLRDRVQAVVLAHRAGLV  222
            IA  L ++ ATVK+HL R + KL  RDR Q V +A R+GLV
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1085) ACPL_4564 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.9 bits (303),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 141/220 (65%), Gaps = 16/220 (7%)

Query  5    IKLLVVDDHPVVRDGLTAMFDRDPEFavvgeaadgaeavRIAEAVGPDVILMDLRMAGMD  64
            I +++VDD++++R GL ++++ D+ + V+GEAADG  A  +  +  PDV+LMDLRM+ +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVTAITELSRRGVPA----RVLVLTTYDTDAHVLPAIEAGATGYLLKDAPreellravra  120
            GV A + L  R+ P     R+LVLTT+D D +VL+A+ AGA G+L K A  E L+ AV A
Sbjct  61   GVGATAAL--RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  121  aargevalSA----SVAARLMSRVRTPA-----PTTGPLSPRELEVLRLIADGNTNREAA  171
             A+G+ +LSA    +V + L  R R+++     + T+ L+ RE +V+   A G  N   A
Sbjct  119  VAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  172  ARLFITEATVKTHLLNIYAKLNVKDRAAAVAAGYNRGLLS  211
              LFI+ ATVKTHL    +KL+ +DR+  V+ ++  GL++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1086) MAP4317c in NC_002944


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.7 bits (302),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 137/218 (63%), Gaps = 10/218 (4%)

Query  8    IAVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAIAAHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A I + RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEGYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRERDVLTLIGKGLSNSEIADE  178
            +G+  L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1087) MAP4_4443 in NC_021200


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.7 bits (302),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 137/218 (63%), Gaps = 10/218 (4%)

Query  8    IAVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAIAAHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A I + RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEGYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRERDVLTLIGKGLSNSEIADE  178
            +G+  L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1088) MLP_04430 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.7 bits (302),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 84/206 (41%), Positives = 130/206 (64%), Gaps = 11/206 (5%)

Query  8    IRVLVADDHPMVRGGLIALLDTLEGVRVIGQAGTGREAVRLAVAHRPEVVVMDLRMPDLD  67
            I V++ DD++M+R+GL ++L+   G+RVIG+A+ GR A  +  + RP+VV+MDLRMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GVEATRQIRT--AVPQVAVLVLTMFDEDALVSRalaagargyllkgaEGAEIERALRAVA  125
            GV AT  +R+   +  V +LVLT FD D  V  AL AGA G+L K+A++  +  A+ AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGEAILGRQVAERVL------GRAGAEP--TANLPGLTPREHEVLDLIAQGLGNATIAAK  177
             G++ L+   A  V+      GR++++    A  + LT RE +V+   A+GL+N +IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LHLAPKTVGNHISAIFTKLGVATRAE  203
            L ++P TV  H++   TKL    R++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

1089) Namu_5018 in NC_013235


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.7 bits (302),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 83/206 (41%), Positives = 129/206 (63%), Gaps = 14/206 (6%)

Query  6    IRVLVVDDHAIVRRGLADLIGTADDLAVAGTaasgeeaiamaaDLGPDVVLMDLSMPGLD  65
            I V++VDD+A++R GL +++  A+ + V G AA G  A+A+  +  PDVVLMDL MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GTAATA--RILADHPHVMVLVLTSFSDQRAINGALEAGAHGYLLKHSEPETILAAIREVA  123
            G +ATA  R  +D   V +LVLT+F ++  + +AL AGA+G+L K +++E+++AA+  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  SGGSPLDPKAARVLLD-----SRRAPQPNL------LTAREEQVLRMVADGLANKMIARR  172
             G+++L + AA+ ++      +R A + +L      LT RE +V+   A GL N  IAR 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  173  LGITERTVKAHLTSVYQRIGVTDRTQ  198
            L I+  TVK+HL     ++   DR Q
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQ  206

1090) MAV_5280 in NC_008595


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.4 bits (301),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 91/218 (42%), Positives = 137/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAAHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A + + RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEGYLDPAVTSRVLTTYRKAAPGPHGAAI----AELTTRERDVLTLIGKGLSNSEIADE  178
            +G+  L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1091) Franean1_3846 in NC_009921


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 84.2 bits (300),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 91/214 (43%), Positives = 142/214 (67%), Gaps = 4/214 (1%)

Query  23   IRVVVADDQEIVRTGLRMILDAQPGIvvvgvavdgrravELARRLRPDVCLIDIRMPVMD  82
            I VV+ DDQ ++R+GLR IL+ ++GI V+G A DGR A  + R  RPDV L+D+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  83   GIQATLALAGPGVADPLAVVVITTFDLDEYVYaalragargfllKDAGPDLLAQAVHAAA  142
            G+ AT AL +    +++ ++V+TTFD DE V AALRAGA GFL K A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  143  CGDALIAPNVTARLLATFAGSGPAPVPAQPV---EALTDREEQVLATVAGGRTNSEIAAD  199
             GD+ +++  +  +++ +   G ++   + +    +LT+RE +V+   A G  N  IA D
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  200  LHISLSTVKTHIASLMAKLGARNRVEIALWAYQT  233
            L IS +TVKTH+   M+KL AR+R ++   A+++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRS  214

1092) BN6_65070 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.9 bits (299),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 74/179 (42%), Positives = 118/179 (66%), Gaps = 11/179 (6%)

Query  50   HPDVVVMDLNMPDLGGVEATR--RIVAHDPTVRVLVLTMFDDDDSVFAAMRAGALGYLLK  107
            +PDVV+MDL MP L+GV AT   R  ++  +VR+LVLT FD+D+ V+AA+RAGA G+L K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  108  AARPQQIvravravaEGEAIFSPGIAVRLLAYFGAPAKSEVEA-----FPELTVREREVL  162
            +A ++ ++ AV AVA G++ +S+G A  +++ +   ++S  +       + LT RE +V 
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV-  164

Query  163  RLMADGRG--NAVIARILVLSPKTVRNHVSNILRKLHVADRAQAVSRAKRAGLGDESGQ  219
             +++ +RG  N  IAR L +SP TV+ H++  + KLH  DR+Q VS A R+GL + + +
Sbjct  165  -VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEH  222

1093) O3I_031985 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.6 bits (298),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 83/192 (44%), Positives = 121/192 (64%), Gaps = 4/192 (2%)

Query  41   SECADGDEVLAAVAAERPDVVLMDLRMKRVGGIDATRILRARD--GAPPVLVLTTFDDDQ  98
            +E ADG   +A + + RPDVVLMDLRM  ++G++AT  LRA     A  +LVLTTFD+D+
Sbjct  30   GEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDE  89

Query  99   llsgalragaagFILKDSPAEDLIRAVRTVAGGGAWLDPSVTERVLSTYr--rirpspar  156
             + +ALRAGA GF+ K + +E LI AV +VA G++ L ++ +  V+S  R     ++   
Sbjct  90   EVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVE  149

Query  157  psarLAELTAREYEVLELIGRGRVNAEIARELGISEVTVKSHVGHIFGKLELRDRAAAIV  216
              AR A LT RE +V+   +RG  N  IAR+L IS  TVK+H+ +   KL+ RDR+  + 
Sbjct  150  LIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVS  209

Query  217  FAFDHGVVTPGE  228
            +AF  G+V  +E
Sbjct  210  IAFRSGLVNRAE  221

1094) KSE_30660 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.6 bits (298),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 73/174 (42%), Positives = 107/174 (62%), Gaps = 7/174 (4%)

Query  1    MVLMDVRMPGLDGLAATRAILRGTD--RPPKILVVTTFEADDYVYEALRAGADGFLLKRS  58
            +VLMD+RMP LDG++AT A LR+     + +ILV+TTF++D+ V  ALRAGADGFL K +
Sbjct  49   VVLMDLRMPILDGVGAT-AALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSA  107

Query  59   RPAEVVQAVRLAATGETLLFPaairrlaaa----raghaadggavaragLTGREGEVLRL  114
             +  ++ AV   A G+T L ++A + + +       + +        A LT RE +V+  
Sbjct  108  DSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLG  167

Query  115  MARGLSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFVTPAE  168
             ARGL N  I+ +L ++  TVKTH++  + KL ARDR Q V  A+ SG+V  AE
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAE  221

1095) Svir_04820 in NC_013159


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.4 bits (297),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 127/210 (61%), Gaps = 10/210 (4%)

Query  16   VTVFLVDDHALFRAGARTELESVSDevrvvgeagsvaeavagIRRTRPQVVLLDVHMP--  73
            + V LVDD+A++RAG R  LE  +  +RV+GEA+    A A IR +RP+VVL+D++MP  
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG--IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  74   DGGGAEVLRRVRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSRELVSAVMRV  133
            DG GA    R  P+L  V +L L+  D+ E+V+A +RAGA G+++K+  S  L++AV  V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  134  ADGDAVFSPRLAGFVLDAFADRPGSEPINDPDL----DLLTPRERDVLRLLARGYAYKEI  189
            A GD+ +S+  A  V+  +  R  + +  D +L      LT RE DV+   ARG     I
Sbjct  120  AKGDTSLSAGAAKTVVSDL--RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  190  ASELFISIKTVETHVSSVLRKTQLSNRYEL  219
            A +LFIS  TV TH++  + K +  +R +L
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQL  207

1096) Caci_5719 in NC_013131


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.1 bits (296),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 100/230 (44%), Positives = 155/230 (68%), Gaps = 9/230 (3%)

Query  1    MISVLLVDDAPLLRMGFRMVLEAQPdvavvgeagdgaeavalaaelRPDVVLMDVRMPGV  60
            MI V+LVDD +++R G+R +LE ++++ V+GEA+DG  A A+    RPDVVLMD+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGIEATARI-SAAQLPS-RVLILTTFDLDEYafaalragaagfllKNAHPADLIAGIRTV  118
            DG+ ATA + + ++L + R+L+LTTFD DE  +AALRAGA GFL K+A++  LIA++ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGDGVVAPRITRQLIEAFARQTDPAATAAGPraderlerlerltdrerevlveIARGQS  178
            A GD  +++  ++ ++  + R+  +A+          + R   LT+RE +V++  ARG  
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVE------LIARTATLTHRETDVVLGAARGLD  173

Query  179  NAEIAETLHLSEATVKTHVSRILPKLELRDRVQAVVFAYEIGLVAAGSQP  228
            N  IA  L +S ATVKTH++R + KL+ RDR Q V +A+  GLV  + +P
Sbjct  174  NVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNRAEHP  223

1097) Dgeo_1708 in NC_008025


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 83.1 bits (296),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 135/217 (63%), Gaps = 15/217 (6%)

Query  10   VRVLLVDDHAVVRQGLRLFLSLDSQIevvgeaangeealaaaeRLHPDVVIMDLMMPVMD  69
            + V+LVDD+A++R GLR +L  D+ I V+GEAA+G  A+A     +PDVV+MDL MP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GIQATRLLRRQHPDTE---VIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADAIHAA  126
            G+ AT  LR  +PD +   ++ LT+   ++ V +A+ AGA G++ K A S++L  A++A 
Sbjct  61   GVGATAALR-ADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  127  ARGEVRLHPEAARRLVRDFR-----TPEM-----RETLTPKEVIVLQLIARGYSNRDIAR  176
            A+G+  L + AA+ +V D+R     + ++       TLT +E  V+   ARG  N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  DQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL  213
            D  ++ ATVKTH++R + KL    R Q    A+R GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1098) KSE_59490 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.8 bits (295),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 87/212 (42%), Positives = 132/212 (63%), Gaps = 4/212 (1%)

Query  3    IRVLLADDQEMVRRGMRRILETQPDLevvgeaadgvgaveaaRLLRPDVALVDVRMPRMD  62
            I V+L DDQ M+R G+R ILE ++++ V+GEAADG +A    R  RPDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLEVVRRLagpgaaaptrvvvvttFDLDEYVYPALRHGASGFLLKRSGPALLVEAVRAAH  122
            G+     L +     + R++V+TTFD DE V +ALR GA GFL K +++  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGDSLISPSVTVRLLRHVTGRAPAASGPGLL---EPLTRREREVAGKVAEGRTNADIAGE  179
             GD+ +S++ +  ++ ++  R+ +A++  L+     LT+RE +V    A G  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LFISAGTVKTHVASIQRKLGVRNRVGIAMRAF  211
            LFIS++TVKTH+     KL  R+R  +   AF
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1099) Bcav_0717 in NC_012669


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.8 bits (295),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 87/217 (41%), Positives = 138/217 (64%), Gaps = 12/217 (5%)

Query  3    IRIVVVDDHPVVRDGIRGQLATTDDLDVVGeaasadealavvaaTSPDLVVTDLRMPG-G  61
            I +V+VDD++++R G+RG L  ++ + V+GEAA +  A+AV+ ++ PD+V+ DLRMP  +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  62   GVSLITHLAASA--PGVAVLVLTTYDTPDDVLPALDAGARGYVLKDAPREELFRAVRAVA  119
            GV+  + L A +   +V +LVLTT+D  ++VL+AL AGA G++ K A  E L+ AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  DGETFLAPSVAGLLVSRV--------rarqqpapaaLSGREVDVLRLVADGRTNRQAAQL  171
             G+T L+++ A  +VS +             +  A+L+ RE DV+   A G  N   A+ 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  172  LGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL  208
            L ++ ATVKTHL +  +KL   DR+  V+ ++RSGL+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1100) KSE_62470 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.6 bits (294),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 97/224 (44%), Positives = 142/224 (64%), Gaps = 11/224 (4%)

Query  7    VRVLIADDDPLLRAGLAVVLETADRIEVVGQAGDGLRAVELARRLRPDVVLMDVRMPGCD  66
            + V++ DD++++RAGL  +LE A+ I V+G+A+DG  A  + R  RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  67   GVEATRRLAG----SASRVLVLTTFRHDAYVWgalragaagfllkraSPERLIDAVHAVA  122
            GV AT  L +    +A R+LVLTTF  D  V +ALRAGA GFL K A +E LI AV+AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  AGEAVLDPAVTRDllgrllaapepppgpsapppgsvpgplaalTVREREVLRLAAEGHPN  182
             G++ L ++ ++         ++      ++    + +  A+LT RE +V+  AA G  N
Sbjct  121  KGDTSLSAGAAK------TVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  183  EEIAALLHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGLMG  226
              IA  L ++ +TVKTH++R + KL ARDR+Q V+ A+R GL+ 
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1101) nfa42460 in NC_006361


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.6 bits (294),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 119/191 (63%), Gaps = 4/191 (2%)

Query  41   ECADGDEVFAAVATTDPDVVLMDLRMKRLGGIDATRQLRSRP--GAPPVLVLTTFDDDQl  98
            E ADG   FA +  + PDVVLMDLRM  L+G++AT  LR+ P   A  +LVLTTFD+D+ 
Sbjct  31   EAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEE  90

Query  99   lsgalragaagfllKDSPAEDLIRAVRTVAGGGAWLDPAVTGRVLSAY--RTVrpaparr  156
            + +ALRAGA GFL K + +E LI AV +VA G++ L ++ +  V+S    R   ++    
Sbjct  91   VLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVEL  150

Query  157  ddrLAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVF  216
              R A LT RE +V+   +RG  N  IA +L IS  TVK+H+ +   KL+ RDR+  + +
Sbjct  151  IARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSI  210

Query  217  AFDHGVVSPGE  227
            AF  G+V+ +E
Sbjct  211  AFRSGLVNRAE  221

1102) Noca_3488 in NC_008699


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 92/222 (42%), Positives = 139/222 (63%), Gaps = 10/222 (4%)

Query  10   IRVLLVDDQELFREGVRVIVDAQEGMGVVGTaadgleavalveelepdvvlMDIRMPDMD  69
            I V+LVDDQ ++R G+R I++ + G+ V+G AADG  A A++    PDVVLMD+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  70   GVEATRQIFLPEraarrqrpvrvvvLTTFNLDDRAATAIRHGASGFLLKGTTPVMLADAI  129
            GV AT  +    RA     +VR++VLTTF+ D+   +A+R GA GFL K++ +  L  A+
Sbjct  61   GVGATAAL----RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  130  RTVHAGNAVLAPtdlttlld-----GRLRSQAPLPPAYLTLTDKEREVFTAVARGLSNTE  184
             +V  G++ L++    T++      GR  ++  L +   TLT++E +V  + ARGL N  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  185  IAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGLVG  226
            IA  +F+S +TVKTH+   + KL  RDR Q+V +A+  GLV 
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1103) AORI_5522 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 89/220 (41%), Positives = 143/220 (65%), Gaps = 8/220 (3%)

Query  1    MIRVLLADDEPLLRAGARLLLNQAGDIDVVAEASDGAEAIDVVRRIPVDVALMDIRMPGT  60
            MI V+L DD++++RAG R +L++AG I V++EA+DG  A+ V+R    DV LMD+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   GGLAAVEEIARE-----VRVIMLTTFGDEAYVaralragaagfllKDTDPAQLIQAVRSA  115
            +G++A   +  +     VR+++LTTF+++  V  ALRAGA GFL K +D+  LI AV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  116  AAGEAVLSPRIAQQVIdrfrdadaadadnaararrrIEALTGRELDVLVRVGRGLGNAEI  175
            A G++ LS+  A+ V+  +R  + + +D    AR    +LT RE DV++  +RGL+N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIAR--TATLTHRETDVVLGAARGLDNVSI  177

Query  176  AGELRLSNGTVKIHVSRILAKLGCANRVQAAILAHDAGIL  215
            A +L +S +TVK H++R ++KL   +R Q   +A  +G++
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1104) MIP_07748 in NC_018612


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.1 bits (292),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAEHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A +   RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRELDVLTLIGQGLSNTEIAGK  178
            +GD+ L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1105) OCU_51130 in NC_016946


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.1 bits (292),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAEHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A +   RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRELDVLTLIGQGLSNTEIAGK  178
            +GD+ L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1106) OCO_51200 in NC_016947


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.1 bits (292),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAEHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A +   RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRELDVLTLIGQGLSNTEIAGK  178
            +GD+ L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1107) OCQ_52190 in NC_016948


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.1 bits (292),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAEHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A +   RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRELDVLTLIGQGLSNTEIAGK  178
            +GD+ L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1108) W7S_25670 in NC_017904


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 82.1 bits (292),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 92/218 (43%), Positives = 136/218 (63%), Gaps = 10/218 (4%)

Query  8    ITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAEHrpdvvvmdlrmrrvd  67
            I V+LVDDQ ++R+GLR IL    G+ +++E ADG    A +   RPDVV+MDLRM  +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GIEATRRLGGRP-----PVLALTTFNEDEllsgalragaagFVLKDSSAEELIRAVRAVA  122
            G+ AT  L + P      +L LTTF+ DE + +ALRAGA GF+ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGDSYLDPAVTSRVLTTYRKAAPGPRGAAI----AELTTRELDVLTLIGQGLSNTEIAGK  178
            +GD+ L ++ +  V++  R+ + ++ +  +    A LT RE DV+   ++GL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA  216
            L IS  TVK+H+ R   KL+ RDR+  +  A+ +G+V 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1109) Psed_0316 in NC_015312


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 81.3 bits (289),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 90/216 (42%), Positives = 138/216 (64%), Gaps = 9/216 (4%)

Query  28   VVLADDQRIVRDGLATLLGLLPGITvvgaaadgeeavalvdRHRPDVLLTDLRMPGCDGV  87
            VVL DDQ ++R GL  +L   +GI V+G AADG  A A++   RPDV+L DLRMP  DGV
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV  62

Query  88   EATRRVRAAH--PGTAVVVLTTYVDDDaivaalragaaGWLSKDADADAIGRALHSAADG  145
             AT  +RA     +  ++VLTT+ +D+ ++AALRAGA G L+K AD++++  A+++ A G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  146  QGTIDAGALARLVAA-SQPAPAGGE-----PPDGLTPREVEVLALIAQGLSNREIARRLV  199
            + ++ AGA   +V+   + + ++ +         LT RE +V+   A+GL N  IAR L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  200  VGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGLAD  235
            ++ AT+KTH+N+  +K   RDR+Q V+ A+R GL +
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1110) ACPL_5146 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 81.0 bits (288),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 87/213 (41%), Positives = 134/213 (63%), Gaps = 8/213 (3%)

Query  1    MIRVLVADDQAMVRTGFGMIIGAQPDMevvgeaadgveaveaaRRLRPDVALFDIRMPKM  60
            MI V++ DDQAM+R+G+  I+  ++++ V+GEAADG  A    R  RPDV L D+RMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLQALRLLAGPGvvdpvkvvmvTTFDLDEYVHQALRNGACGFLLKDAGPALLIEAVRAA  120
            DG+ A   L +   +++V+++++TTFD DE V  ALR GA GFL K A++  LI AV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  121  HSGDALISPSITVRLLEHLSQPAPSTDD-------GGLSPRELEVVRLIARGRTNAEIAT  173
              GD+ +S++ +  ++ +L + + S+ D       + L+ RE +VV   ARG  N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  174  ELFISVGTVKTHLGSVQSKIGLRNRVEVAAWAW  206
            +LFIS +TVKTHL    +K+  R+R ++ + A 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1111) AMIS_52510 in NC_017093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 80.7 bits (287),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 138/212 (66%), Gaps = 8/212 (3%)

Query  24   IRVLIADDQAMVRTGFGMIIGAQPDMEVVGEASDGVEAVAAARRLRPDVALLDIRMPKMD  83
            I V++ DDQAM+R+G+  I+  ++++ V+GEA+DG  A A  R  RPDV L+D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  84   GLQALKLLagpgvadpvkvvvvTTFDLDEYVHaalrggaagfllKDSGPALLVEAVRAAV  143
            G+ A   L +    ++V+++V+TTFD DE V AALR+GA GFL K +++  L+ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  144  SGDALISPSVTVRLLKHLATPAQPADD-------SGLSPRELDVVRLTARGATNAEIANE  196
             GD+ +S++ +  ++ +L   +++A D       + L+ RE DVV  +ARG  N  IA +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  197  LFISIGTVKTHLGSVHAKLGTRNRVEIAAWAW  228
            LFIS +TVKTHL    +KL +R+R ++ + A 
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAF  212

1112) Sfla_1948 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 80.5 bits (286),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 85/191 (45%), Positives = 130/191 (69%), Gaps = 5/191 (2%)

Query  6    IRVLVAEDQSAVRAGLVLILRSAPDIevvgeaadgeaavRLTRELRPDLVLMDVQMPRLD  65
            I V++ +DQ+ +RAGL  IL   ++I V+GEAADG +A  + R  RPD+VLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVSATRQIVAER-LADV--LVLTTFDLDEYVFGALRAGASGFLLKNTEAGDLIAAVRTVA  122
            GV+AT  + A+  L  V  LVLTTFD DE V++ALRAGA GFL K++++  LIAAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEGLIAPAVTRRLIee-fasaspahepaapeaLGTLTRREREVLGCLGLGLSNMEIAGR  181
            +G+  ++++ ++ ++ +    + +A +       +TLT+RE +V+   + GL N+ IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LSMAEATVKTH  192
            L ++ ATVKTH
Sbjct  181  LFISPATVKTH  191

1113) F750_4877 in NC_021055


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 80.5 bits (286),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 85/191 (45%), Positives = 130/191 (69%), Gaps = 5/191 (2%)

Query  6    IRVLVAEDQSAVRAGLVLILRSAPDIevvgeaadgeaavRLTRELRPDLVLMDVQMPRLD  65
            I V++ +DQ+ +RAGL  IL   ++I V+GEAADG +A  + R  RPD+VLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVSATRQIVAER-LADV--LVLTTFDLDEYVFGALRAGASGFLLKNTEAGDLIAAVRTVA  122
            GV+AT  + A+  L  V  LVLTTFD DE V++ALRAGA GFL K++++  LIAAV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  RGEGLIAPAVTRRLIee-fasaspahepaapeaLGTLTRREREVLGCLGLGLSNMEIAGR  181
            +G+  ++++ ++ ++ +    + +A +       +TLT+RE +V+   + GL N+ IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  182  LSMAEATVKTH  192
            L ++ ATVKTH
Sbjct  181  LFISPATVKTH  191

1114) BN6_31650 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 80.5 bits (286),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 134/216 (63%), Gaps = 10/216 (4%)

Query  25   VLVADDHAAIRTGLVMILGGADgievvgeaadgaaavrlareLRPDVVLMDIRMPGVDGI  84
            V++ DD+A IR+GL  IL +A+   +   A + +A   +    RPDVVLMD+RMP +DG+
Sbjct  4    VVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGS-RPDVVLMDLRMPILDGV  62

Query  85   EATRQLSGVCE-----VLVLTTFDLDEYVHgalragaagfllKSVEAPALVEAVRQVAAG  139
             AT  L +  +     +LVLTTFD DE V +ALRAGA GFL KS ++ +L+ AV  VA G
Sbjct  63   GATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKG  122

Query  140  DGVLAPSVTRRLMREFASSAPRSRPPAL----DALTEREVDVLRCLGEGLSNHQIGRKLH  195
            D  L+++ ++ ++ ++   +  +    L     +LT+RE DV+   + GL N  I+R L 
Sbjct  123  DTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLF  182

Query  196  IGETTVKTHVSRVLTKLDLRSRVQAAILAQDAGLLS  231
            I+ +TVKTH++R +TKL+ R R Q   +A  +GL++
Sbjct  183  ISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1115) Amir_2409 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 80.2 bits (285),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 93/216 (44%), Positives = 136/216 (63%), Gaps = 9/216 (4%)

Query  6    IRVLVVEDQEVAREALCALIGGTADLVLVGRARDGREAVDAAVRLRPDVVLMDIRMPVVD  65
            I V++V+DQ + R +L +++ +++ + ++G A DGR A       RPDVVLMD+RMP++D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVEatrl--vlarvpaarvvvlttFDCDEYVDRALRAGACGFVLKSapvvdvvravraah  123
            GV AT      + + A R++VLTTFD DE V  ALRAGA GF+ KSA    ++ AV A  
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  vGDSVLSPEvarrvvagyaarpggpTPFDV------LGVREREVAAGVARGLSNEEVAAE  177
             GD+ LS+  A+ VV++   R  ++T  ++      L  RE +V  G ARGL N  +A +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  178  LSLSLATVKTYLSRVFDKVGVRDRTQLVVLAYRTGF  213
            L +S ATVKT L+R   K+  RDR QLV +A+R+G+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1116) KSE_66880 in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 79.7 bits (283),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/205 (42%), Positives = 131/205 (64%), Gaps = 20/205 (9%)

Query  1    MIRVLVVDDHPVVRRGLRALVEDLPDVTAVgeaadgaaalallaelpadrrpDVVLMDLQ  60
            MI V++VDD++++R GLR+++ED +++  +GEAADG +A+A++    +    DVVLMDL+
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRP----DVVLMDLR  55

Query  61   MGTGMHGVEATRRITALPDPPAV--LVLTTYSTDADILAAVEAGATGYLLKDAPPEDLAA  118
            M   ++GV AT  + A PD  AV  LVLTT+  D ++LAA+ AGA G+L K A +E L A
Sbjct  56   MPI-LDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIA  114

Query  119  AIHATARGETVLAPpva------------arllgrvragrpSLSPREAEILQLLAEGLPN  166
            A++A A+G+T L++  A            +     + A  ++L+ RE++++   A GL N
Sbjct  115  AVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDN  174

Query  167  RQISKRLFISEATVKTHLVHIYDKL  191
              I++ LFIS ATVKTHL +   KL
Sbjct  175  VSIARDLFISPATVKTHLNRAMTKL  199

1117) Mlut_18530 in NC_012803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 79.7 bits (283),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 137/210 (66%), Gaps = 18/210 (8%)

Query  5    VMLVDDHPvvragvravvEAHPDLTVVAEAADGAEAIGVLEAGEPAVDVVLMDLQMGAGM  64
            V+LVDD++++RAG+R+++E ++++ V++EAADG  A++V+ ++ P  DVVLMDL+M   +
Sbjct  4    VVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRP--DVVLMDLRMPI-L  59

Query  65   DGVTATRAVRER--WPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEIASAVRQA  122
            DGV AT A+R      +V++L+LTTFD + ++LAA+ AGA G+L K A SE + +AV   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  123  AAGRKALAPQVAATLM------GR------MSGGsevlsereielleliARGATNKVAAK  170
            A G  +L++  A T++      GR      + + +  L++RE +++   ARG  N   A+
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  171  ELFISEATVKTHLVHIFQKLGVDNRTRAVD  200
            +LFIS ATVKTHL +   KL   +R + V 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVS  209

1118) Ndas_4417 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 79.4 bits (282),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 75/184 (41%), Positives = 119/184 (65%), Gaps = 2/184 (1%)

Query  37   PDIRVLAEAEDGSAVVDLVARHSPDVVLMDIRMPTVDGLTATERLRALED--PPEVLVLT  94
            ++IRV++EA DG +   ++    PDVVLMD+RMP +DG+ AT  LRA  D  +  +LVLT
Sbjct  24   AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLT  83

Query  95   TFDADEHVlralragaagfllKDTPPAEIVESVRQVSRGMSVLSPAVTRRLVERVGANDr  154
            TFD+DE+VL ALRAGA GFL K + +  ++ +V  V++G + LS++ ++ +V  +   +R
Sbjct  84   TFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGR  143

Query  155  geralrarerlsalNGRELEVAVAVGEGRSNADIASALFLSVPTVKTHVSSILTKLGLNN  214
            +   +    R ++L  RE +V ++ + G  N  IA  LF+S +TVKTH++  +TKL   +
Sbjct  144  SATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARD  203

Query  215  RVQV  218
            R Q+
Sbjct  204  RGQL  207

1119) FraEuI1c_2480 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 79.2 bits (281),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 96/217 (45%), Positives = 143/217 (66%), Gaps = 6/217 (2%)

Query  5    IRVLVVDDQDLFRGGFAMILNAQPDITvvgeaadgaeavraaaalapdvvlMDIRMPTLD  64
            I V++VDDQ ++R+G+  IL+ +++I V+GEAADG  A     +  PDVVLMD+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  65   GVGATAAICQSC---AAKVLVLTMYDVDDYVYAALRAGASGFLLKDVRRDELVRAVRLVA  121
            GVGATAA+       A ++LVLT +D D+ V AALRAGA GFL K    + L+ AV  VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  AGESLLAPSVTRRLIADVVgrgaarpala--rrldelteresetlrllgrglsNSEIAAT  179
             G++ L+++ ++ +++D+  RG +   +    R   LT+RE++ +   +RGL N  IA  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  180  LVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGLI  216
            L +S  TVK+H++  +TKL  RDR+Q V +A+ SGL+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1120) SHJG_6458 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 78.6 bits (279),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  1    MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVELTRALGPDLVLMDVQMPRL  60
            MI V++ +DQ+ +RAGL  IL   ++I V+GEAADG  A  + R+  PD+VLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRRIVAER-LADV--LVLTTFDLDEYVfgalragaagfllKNAEAGQLLEAVRTV  117
            DGV+AT  + A+  L  V  LVLTTFD DE V++ALRAGA GFL K+A++  L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGEGIVAPAVTRRLIaefaaapareaeadpaV-LEGLTRREREVLRRIGEGLSNAEIAA  176
            A+G+  ++++ ++ +++++       ++ +       LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLDMAEGTVKTHVSRLLAKLGLRSRVQ  203
             L ++ +TVKTH++R ++KL  R R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1121) SHJGH_6219 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 78.6 bits (279),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 87/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  1    MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVELTRALGPDLVLMDVQMPRL  60
            MI V++ +DQ+ +RAGL  IL   ++I V+GEAADG  A  + R+  PD+VLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRRIVAER-LADV--LVLTTFDLDEYVfgalragaagfllKNAEAGQLLEAVRTV  117
            DGV+AT  + A+  L  V  LVLTTFD DE V++ALRAGA GFL K+A++  L+ AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGEGIVAPAVTRRLIaefaaapareaeadpaV-LEGLTRREREVLRRIGEGLSNAEIAA  176
            A+G+  ++++ ++ +++++       ++ +       LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  RLDMAEGTVKTHVSRLLAKLGLRSRVQ  203
             L ++ +TVKTH++R ++KL  R R Q
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQ  206

1122) MTES_2152 in NC_015125


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 123/188 (66%), Gaps = 6/188 (3%)

Query  19   RAGLRLVLGTDRGIQVVGEAADGLEAESVIARHQPDVVLMDIRMPRCDGLTATAREVAAD  78
            RAGLR +L  D GI+V+GEAADG  A +VI   +PDVVLMD+RMP  DG+ ATA  + AD
Sbjct  14   RAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATA-ALRAD  71

Query  79   PSRA---IIVLTTFDADEDVVRALRAGARGFLLKDappaelvaavraaasgrsvlaPGVL  135
            P      I+VLTTFD+DE+V+ ALRAGA GFL K A +  L+AAV A A G + L++G  
Sbjct  72   PDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAA  131

Query  136  DQVIRLAADHTRLPTAAE-REALASLTPrerevaaavarGASNADISAELFLSLPTVKTH  194
              V+     + R +T  E     A+LT RE +V  + ARG  N  I+ +LF+S +TVKTH
Sbjct  132  KTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTH  191

Query  195  VGRVLTKL  202
            + R +TKL
Sbjct  192  LNRAMTKL  199

1123) SCATT_46930 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 125/202 (62%), Gaps = 17/202 (8%)

Query  1    MIRVLIVDDHPVVRRGLRAMVDDLPELTavgeaadgaaalallesgaaePDVVLMDLQMA  60
            MI V++VDD++++R GLR++   L +      +  + +  A+    ++ PDVVLMDL+M+
Sbjct  1    MIDVVLVDDQAMIRAGLRGI---LEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP  57

Query  61   GVPGVAATRRITALPDPPAV--LILTTYSTDADILAAVEAGATGYLLKDappeevaaavr  118
             + GV+AT  + A PD  AV  L+LTT+  D ++LAA+ AGA G+L K A +E + AAV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  119  aaarGETVLAPPVAARLLGRV-RDGRPA-----------LSPRETEILALLAEGLANRQI  166
            A A+G+T L++  A  +++ + R GR+A           L+ RET+++   A GL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  167  SKRLFISEATVKTHLVHIYDKL  188
            ++ LFIS ATVKTHL +   KL
Sbjct  178  ARDLFISPATVKTHLNRAMTKL  199

1124) liaR in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 78.4 bits (278),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 125/202 (62%), Gaps = 17/202 (8%)

Query  1    MIRVLIVDDHPVVRRGLRAMVDDLPELTavgeaadgaaalallesgaaePDVVLMDLQMA  60
            MI V++VDD++++R GLR++   L +      +  + +  A+    ++ PDVVLMDL+M+
Sbjct  1    MIDVVLVDDQAMIRAGLRGI---LEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP  57

Query  61   GVPGVAATRRITALPDPPAV--LILTTYSTDADILAAVEAGATGYLLKDappeevaaavr  118
             + GV+AT  + A PD  AV  L+LTT+  D ++LAA+ AGA G+L K A +E + AAV 
Sbjct  58   ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVE  117

Query  119  aaarGETVLAPPVAARLLGRV-RDGRPA-----------LSPRETEILALLAEGLANRQI  166
            A A+G+T L++  A  +++ + R GR+A           L+ RET+++   A GL N  I
Sbjct  118  AVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  167  SKRLFISEATVKTHLVHIYDKL  188
            ++ LFIS ATVKTHL +   KL
Sbjct  178  ARDLFISPATVKTHLNRAMTKL  199

1125) B737_6106 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 77.6 bits (275),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  3    IRVIVADDQEIVRTGLTMLLGSQPgievvgeaadgeaaveLARRLRPDVCLFDIRMPGMD  62
            I V++ DDQ ++R+GL  +L  ++GI V+GEAADG +A  + R  RPDV L D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLAGPGVENPLAVVVITTFDLDEYVYaalragargfllKNAGTQLLAQAVHAAA  122
            G+ AT  L +    N++ ++V+TTFD DE V AALRAGA GFL K+A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  TGDALIAPSVTARLLDAFAGTGSGAPS----QPIEPLTDREEQVLLSVARGRTNREITEE  178
             GD+ ++++ +  ++  +   G +A           LT+RE +V+L+ ARG  N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYITLSTVKTHIASLMAKLGARNRVEI  205
            L+I+ +TVKTH+   M+KL AR+R ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

1126) RAM_31785 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 77.6 bits (275),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  3    IRVIVADDQEIVRTGLTMLLGSQPgievvgeaadgeaaveLARRLRPDVCLFDIRMPGMD  62
            I V++ DDQ ++R+GL  +L  ++GI V+GEAADG +A  + R  RPDV L D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLAGPGVENPLAVVVITTFDLDEYVYaalragargfllKNAGTQLLAQAVHAAA  122
            G+ AT  L +    N++ ++V+TTFD DE V AALRAGA GFL K+A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  TGDALIAPSVTARLLDAFAGTGSGAPS----QPIEPLTDREEQVLLSVARGRTNREITEE  178
             GD+ ++++ +  ++  +   G +A           LT+RE +V+L+ ARG  N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYITLSTVKTHIASLMAKLGARNRVEI  205
            L+I+ +TVKTH+   M+KL AR+R ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

1127) AMES_6106 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 77.6 bits (275),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  3    IRVIVADDQEIVRTGLTMLLGSQPgievvgeaadgeaaveLARRLRPDVCLFDIRMPGMD  62
            I V++ DDQ ++R+GL  +L  ++GI V+GEAADG +A  + R  RPDV L D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLAGPGVENPLAVVVITTFDLDEYVYaalragargfllKNAGTQLLAQAVHAAA  122
            G+ AT  L +    N++ ++V+TTFD DE V AALRAGA GFL K+A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  TGDALIAPSVTARLLDAFAGTGSGAPS----QPIEPLTDREEQVLLSVARGRTNREITEE  178
             GD+ ++++ +  ++  +   G +A           LT+RE +V+L+ ARG  N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYITLSTVKTHIASLMAKLGARNRVEI  205
            L+I+ +TVKTH+   M+KL AR+R ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

1128) AMED_6196 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 77.6 bits (275),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 137/207 (67%), Gaps = 5/207 (2%)

Query  3    IRVIVADDQEIVRTGLTMLLGSQPgievvgeaadgeaaveLARRLRPDVCLFDIRMPGMD  62
            I V++ DDQ ++R+GL  +L  ++GI V+GEAADG +A  + R  RPDV L D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GIEATRRLAGPGVENPLAVVVITTFDLDEYVYaalragargfllKNAGTQLLAQAVHAAA  122
            G+ AT  L +    N++ ++V+TTFD DE V AALRAGA GFL K+A+++ L  AV+A A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  123  TGDALIAPSVTARLLDAFAGTGSGAPS----QPIEPLTDREEQVLLSVARGRTNREITEE  178
             GD+ ++++ +  ++  +   G +A           LT+RE +V+L+ ARG  N  I+ +
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARD  180

Query  179  LYITLSTVKTHIASLMAKLGARNRVEI  205
            L+I+ +TVKTH+   M+KL AR+R ++
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQL  207

1129) Strvi_8687 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 76.8 bits (272),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 139/219 (64%), Gaps = 7/219 (3%)

Query  12   VIRVAVVDDEALVRSGLRLILGTAPDIDVVAECS-GASAVATVLGSKADVVLLDIRMPDA  70
            +I V +VDD+A++R+GLR IL  A +I V++E + G SA A + GS++DVVL+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  71   DGLTVLRQLRAAPRSPAVAM--LTTFDVQEYlaaalragaagfllKDTDPEQLVRAVRTL  128
            DG+     LRA P   AV +  LTTFD +E + AALRAGA GFL K +D+E L+ AV ++
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  129  AEGGSVLDPAVTRAVIGGYL---aaeaeataaeaveaLTPREREVLALLGEGLANPQIAE  185
            A G++ L ++ +++V+++      + ++        +LT RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  186  RMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGLVT  224
             + ++P+TVK H+   + KL + +R Q   +A R+GLV 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1130) FraEuI1c_5248 in NC_014666


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 76.5 bits (271),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 88/219 (41%), Positives = 140/219 (64%), Gaps = 16/219 (7%)

Query  13   IRLLVVDDHPVVRDGLIGMFAREPDvevvgeaaegaqavqlaaRLRPDVILMDLRMPGMD  72
            I +++VDD++++R GL G++  ++++ V+GEAA+G  A  +    RPDV+LMDLRMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  73   GVTAIRELARGGA---GARVLVLTTYDTDSHVLPAIEAGATGYllkdaarddllravraa  129
            GV A   L R+++   + R+LVLTT+D D +VL+A+ AGA G+L K A  + L+ AV A 
Sbjct  61   GVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  130  argeavlaP----SVAATLMNRVRTPE-------TGPLSQRELEVLQLVAAGATNRVVAA  178
            A+G++ L++    +V + L  R R++        T+ L++RE +V+   A G  N  +A 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  QLFVTEATVKTHLLNIYAKLGVNDRAAAVAEAFGRGLLT  217
            +LF++ ATVKTHL    +KL   DR+  V+ AF  GL+ 
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1131) L083_3138 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 76.3 bits (270),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 92/211 (44%), Positives = 138/211 (66%), Gaps = 7/211 (3%)

Query  1    MISILVVDDEWMVRAMLRTILGSAADLTVvgeaadgaeavaqaqKLRPDVVLIDIRMPGR  60
            MI +++VDD+ M+RA LR IL  A+ + V+GEAADG  A A  +  RPDVVL+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLSATLDLVRLP--MAPKVIILTTFDLDEYVRTGLRNGAVGFLLKDASademiaavraa  118
            DG++AT  L   P   A ++++LTTFD DE V ++LR GA GFL K A ++ +IAAV A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  aagdaMLSPRVTRRLLETFADAPEQPPGTDRQAAARDRLSPLSDKELEVLRTLADGMANA  178
            A GD+ LS+  ++ ++  +       ++TD +  AR   + L+++E +V+   A G+ N 
Sbjct  120  AKGDTSLSAGAAKTVVSDLR--RRGRSATDVELIART--ATLTHRETDVVLGAARGLDNV  175

Query  179  DIARHLHLSEATVKTHVSRILAKLKLTNRVQ  209
             IAR+L +S ATVKTH++R ++KL   +R Q
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1132) SACTE_0098 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 76.0 bits (269),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 92/209 (45%), Positives = 130/209 (63%), Gaps = 6/209 (2%)

Query  15   ISVLVVDDEPVIRAGLSAILDSQADITVAGTADDGEQAVEACARLRPDVLLMDIRMPRRD  74
            I V++VDD+++IRAGL +IL+ +A+I V G A DG  A       RPDV+LMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  75   GLWALAElgrrgllgpgrsrvlMLTTFDLDAYVDDALTAGASGFLLKNSSYEQLTEavra  134
            G+ A A L     L + R    +LTTFD D  V  AL AGA GFL K++  E L  AV A
Sbjct  61   GVGATAALRADPDLNAVRIL--VLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEA  118

Query  135  aaaghsalspaVTRRIIEGHLSGRPR-PSDQEL-ARLRDLTEREVDVLRLIRDGLSNAEI  192
             A G+++LS++ ++ ++ ++L  R R ++D EL AR   LT+RE DV+     GL N  I
Sbjct  119  VAKGDTSLSAGAAKTVV-SDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSI  177

Query  193  AGELVVSLHTVKTHVSRVLMKTGCQSRAQ  221
            A +L +S  TVKTH++R + K   + R+Q
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1133) Micau_3457 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.7 bits (268),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 143/218 (66%), Gaps = 5/218 (2%)

Query  3    VRVVVADDQALVRTGFRMILtaggvdvvaeaatgaeavdavRRTRPDVVLMDVRMPELDG  62
            + VV+ DDQA++R+G+R IL  +G+ V++EAA G  A   +R +RPDVVLMD+RMP LDG
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDG  61

Query  63   LEATRRILTGA-VAAPRIIILTTFDLDQYVYaalaagasgfllKDVTPEHLVAAVRMVQD  121
            + AT  + +++ + A RI++LTTFD D+ V AAL AGA GFL K   +E L+AAV  V  
Sbjct  62   VGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  122  GDALLAPAITRRLVRRFARRDPQTATVH---RDlatltrretevlrllaGGlsnaelaea  178
            GD+ L+++ ++ +V  + RR+  ++ V+   R  +   R    VL     GL N  +A  
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAAR-GLDNVSIARD  180

Query  179  lhlseaTVKTHVARILAKLRLRDRVQAVVVAYETGLVS  216
            L +S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1134) ML5_4933 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.7 bits (268),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 96/218 (45%), Positives = 143/218 (66%), Gaps = 5/218 (2%)

Query  3    VRVVVADDQALVRTGFRMILtaggvdvvaeaatgaeavdavRRTRPDVVLMDVRMPELDG  62
            + VV+ DDQA++R+G+R IL  +G+ V++EAA G  A   +R +RPDVVLMD+RMP LDG
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDG  61

Query  63   LEATRRILTGA-VAAPRIIILTTFDLDQYVYaalaagasgfllKDVTPEHLVAAVRMVQD  121
            + AT  + +++ + A RI++LTTFD D+ V AAL AGA GFL K   +E L+AAV  V  
Sbjct  62   VGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAK  121

Query  122  GDALLAPAITRRLVRRFARRDPQTATVH---RDlatltrretevlrllaGGlsnaelaea  178
            GD+ L+++ ++ +V  + RR+  ++ V+   R  +   R    VL     GL N  +A  
Sbjct  122  GDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAAR-GLDNVSIARD  180

Query  179  lhlseaTVKTHVARILAKLRLRDRVQAVVVAYETGLVS  216
            L +S ATVKTH+ R ++KL+ RDR Q V +A+ +GLV+
Sbjct  181  LFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1135) ACPL_5667 in NC_017803


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 128/194 (66%), Gaps = 6/194 (3%)

Query  7    GVEVVALATDGNEAIAAVAAHDPDVVLMDLRMPHCDGTTATRRIRAEH--PRTQVIVLTT  64
            G+ V++ A+DG  A+A + +  PDVVLMDLRMP  DG  AT  +RA+      +++VLTT
Sbjct  25   GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTT  84

Query  65   FADDSDVlaalragargYLTKDaaaeevhravhrvaaghaDLDPSVQRRLLTWLp----a  120
            F +D +VLAALRAGA G+L+K A +E +  AV+ VA G++ L ++  + +++ L     +
Sbjct  85   FDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRS  144

Query  121  gspgpagagaQGLTERELDVLRLIGSGLTNGEIAAYLKVSESTVKTHVNHVFAKIRVRDR  180
            ++     A +  LT+RE DV+   + GL N  IA  L +S +TVKTH+N+  +K++ RDR
Sbjct  145  ATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDR  204

Query  181  AQAVTFAFRNGIAS  194
            +Q V++AFR+G+ +
Sbjct  205  GQLVSIAFRSGLVN  218

1136) hrrA in NC_016782


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1137) hrrA in NC_016799


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1138) hrrA in NC_016800


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1139) hrrA in NC_016801


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1140) hrrA in NC_016785


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1141) hrrA in NC_016786


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1142) hrrA in NC_016802


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1143) hrrA in NC_016783


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1144) DIP2267 in NC_002935


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1145) hrrA in NC_016790


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 75.0 bits (265),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 90/219 (42%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1146) hrrA in NC_016787


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 74.7 bits (264),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATATIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATA++R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1147) hrrA in NC_016788


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 74.7 bits (264),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATATIRRRMD-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATA++R   D N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1148) hrrA in NC_016789


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 74.2 bits (262),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 89/219 (41%), Positives = 135/219 (62%), Gaps = 21/219 (9%)

Query  1    MIRVLLADDHEIVRLGLRAVLESAEDievigevataeaaiaaaqaggidviLMDLRFGPG  60
            MI V+L DD+ ++R GLR++LE A +I VIGE A + +A+A  +++  DV+LMDLR    
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP--  57

Query  61   VQGTKLTSGADATAAIRRRMN-NPPEVLVVTNYDTDADILGAIEAGALGYMLKDAPPEEL  119
                 +  G +ATAA+R   + N+  +LV+T +D D ++L+A+ AGA G++ K A +E L
Sbjct  58   -----ILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESL  112

Query  120  LAAVRSAAEGDTALSP----TVANRLMSRVRAPRN--------SLTPRELEVLKLVAGGS  167
            +AAV + A GDT+LS+    TV + L  R R++ +        +LT RE +V+   A G 
Sbjct  113  IAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGL  172

Query  168  SNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIA  206
             N  I+R L++S ATVK+HL +   KL  R R   V+IA
Sbjct  173  DNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1149) MODMU_1795 in NC_017955


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 74.2 bits (262),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 90/220 (41%), Positives = 141/220 (65%), Gaps = 7/220 (3%)

Query  4    IRVLLVDDEELVRFGLRTVLESvggfevvgeagdgaagvaaaRELRPDVVLTDIRMPGMD  63
            I V+LVDD+ ++R GLR +LE  G   +   A++ +A     R  RPDVVL D+RMP +D
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVI-RGSRPDVVLMDLRMPILD  60

Query  64   GLAATRAILALPD--PPQVAVLTTFHVDEYVYaalaagaagfllKDTPPREIASAVRAVA  121
            G++AT A+ A PD  + ++ VLTTF+ DE V AAL AGA GFL K + +  + +AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  DGTATLSPAVTATLIDSYVDrraaprraaalqrvaTLSDREQEVLRLLGTGES--NADLA  179
             G ++LS++ + T++     R  ++     + R ATL++RE +V  +LG++ +  N  +A
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDV--VLGAARGLDNVSIA  178

Query  180  RRLIVSEATVKTYVSRLLTKLDLTNRTQAAILAHEAGLLE  219
            R L++S ATVKT ++R +TKL+  +R Q   +A  +GL++
Sbjct  179  RDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1150) AORI_4951 in NC_021252


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.9 bits (261),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 134/218 (62%), Gaps = 8/218 (3%)

Query  6    IQVLLVDDQElvrsglrrilrrrDGFVIAGECGDGSEVPAALAAHEVDVIVMDLRMKNVG  65
            I+V+LVDDQ ++R+GLR IL    G+ + GE +DG    A + +   DV++MDLRM  ++
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  66   GVEATRRLRRTGGHPPVlalttfd--ddnlladalragaaGYVLKDSPAEDLIRAVRAVA  123
            GV AT  LR   +  +V  L      +D+ +  ALRAGA G++ K + +E LI AV AVA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  124  AGDAWLDPGVTGRVLAAYRQAAGNGSG----GRSPELLTPREQDVLRAIGRGLTNAEIAA  179
             GD+ L +G +  V++  R+ + ++++    +R++ L T RE DV+ + +RGL N  IA 
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATL-THRETDVVLGAARGLDNVSIAR  179

Query  180  TLVISEVTVKSHIGRIFTKLQLRDRAAAIVYAFDHGIV  217
             L IS  TVK+H+ R  TKL+ RDR+  +  AF  G+V
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV  217

1151) O3I_000640 in NC_018681


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.6 bits (260),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 91/211 (44%), Positives = 138/211 (66%), Gaps = 7/211 (3%)

Query  8    VRVVIVDDDQLVRMALRLVIDGEPDLTvvaeaadgdaalavvdEQRPDVVLMDVRMPGRD  67
            + VV+VDD+ ++R +LR +++ ++++ V++EAADG +A+AV+   RPDVVLMD+RMP  D
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  68   GVDTTRCLRAVPGAPAV--LMLTTFDSDELVlgalragalgFVLKDTPPARIADAVRTVA  125
            GV++T  LRA P+  AV  L+LTTFD+DE VL+ALRAGA GF+ K + +  +  AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  126  AGNPVLSPTVTARVIAAATGPGSTEARNASRDAARKRLAALSERELDTARAIADGLGNPE  185
             G+  LS+  +  V++     G    R+A+      R A+L++RE D   + A GL+N  
Sbjct  121  KGDTSLSAGAAKTVVSDLRRRG----RSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  186  IAARLQVTVATVKAHTGNLFTKLGVANRVQI  216
            IA  L ++ ATVK+H     TKL   +R Q+
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQL  207

1152) CMN_00024 in NC_020891


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 72/175 (42%), Positives = 102/175 (59%), Gaps = 12/175 (6%)

Query  29   PDVVLLDIRMPAPDGLAILAELMAEPRPPAVAML--TTFDTDDQVLEALHRGASGFLLKD  86
            PDVVL+D+RMP  DG++  A L A+P   AV +L  TTFD D++VL AL+ GA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  87   TDPEQLARHVLTLASGGIVLAPG--------LRPGRLFRSLADDAERARVARLGDRETTV  138
            +D+E L   V ++A G+  L++G        LR  R  RS +D    AR A L +RET V
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLR--RRGRSATDVELIARTATLTHRETDV  164

Query  139  LKALARGLSNAEIVAECGLTLGTVKETVSSIVQTLGVGSRVEAAVVADRAGLVPR  193
            + + ARGL N  I  +  ++ +TVK  ++  +  L    R +   +A R+GLV R
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

1153) MLP_12630 in NC_015635


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 87/217 (41%), Positives = 133/217 (62%), Gaps = 19/217 (8%)

Query  7    VLVVDDHPVVRSGLRLLLGTIDGLEVVGEAADGETA---VRECRLLGPDVVLMDLAMPGT  63
            V++VDD++++R+GLR +L    G+ V+GEAADG +A   +R  R   PDVVLMDL MP  
Sbjct  4    VVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSR---PDVVLMDLRMPIL  59

Query  64   GGVEATRRIRAAQ--PEVAVLVLTMSddddalrralragargyllKEAGQEDIVAAIASV  121
            +GV AT  +RA      V +LVLT  D+D+ +  ALRAGA G+L K A+ E ++AA+ +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  SNGQTVLSPGMAERMLEPI------ADSASF----PALTTREREILALVADGLRTATIAE  171
            ++G+T LS+G A  ++  +      A    +    ++LT RE +++   A GL   +IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  172  RLYLSPKTVSNNLTAIFAKLGVADRAQAMIMARQHGL  208
             L++SP TV  +L    +KL   DR+Q + +A + GL
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1154) SCATT_04190 in NC_017586


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 74/181 (41%), Positives = 110/181 (61%), Gaps = 3/181 (1%)

Query  27   IEVVAQACDGLHAVEQATAHRVDVALVDVRMPRMDGITATARLRALP--RPPKVITLTTF  84
            I V+++A DG  A     + R DV L+D+RMP +DG+ ATA LRA P   + +++ LTTF
Sbjct  26   IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTF  85

Query  85   DLDEYVYNALAAGADGFLLKDTDPAEILRAVHLVAVGSAMLHPSAARRLIDRYHQaggar  144
            D DE V  AL AGADGFL K +D+  ++ AV+ VA G + L ++AA+ ++   ++ G + 
Sbjct  86   DGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSA  145

Query  145  ttaa-rtrldrltPRERDVLALLAEGETNAEIAARLGMRESTVKAHVSRILTALEVTNRV  203
            T     +R   LT RE DV+   A G  N  IA  L +  +TVK+H++R +T L+  +R 
Sbjct  146  TDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRG  205

Query  204  Q  204
            Q
Sbjct  206  Q  206

1155) cinR in NC_016111


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 74/181 (41%), Positives = 110/181 (61%), Gaps = 3/181 (1%)

Query  27   IEVVAQACDGLHAVEQATAHRVDVALVDVRMPRMDGITATARLRALP--RPPKVITLTTF  84
            I V+++A DG  A     + R DV L+D+RMP +DG+ ATA LRA P   + +++ LTTF
Sbjct  26   IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTF  85

Query  85   DLDEYVYNALAAGADGFLLKDTDPAEILRAVHLVAVGSAMLHPSAARRLIDRYHQaggar  144
            D DE V  AL AGADGFL K +D+  ++ AV+ VA G + L ++AA+ ++   ++ G + 
Sbjct  86   DGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSA  145

Query  145  ttaa-rtrldrltPRERDVLALLAEGETNAEIAARLGMRESTVKAHVSRILTALEVTNRV  203
            T     +R   LT RE DV+   A G  N  IA  L +  +TVK+H++R +T L+  +R 
Sbjct  146  TDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRG  205

Query  204  Q  204
            Q
Sbjct  206  Q  206

1156) Micau_3071 in NC_014391


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 94/208 (46%), Positives = 144/208 (70%), Gaps = 8/208 (3%)

Query  3    IRVLLADDQAMVRGGLRLILEDQPDITvvaeaadgvdavaqaRRLRPDVCLVDIRMPRLD  62
            I V+L DDQAM+R+GLR ILED ++I V++EAADG  A A  R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLQVTRAL-AGPEVADPLRVVVVTTFDLDEYVYgalrggaagfllKDAGPALLVEAVRAA  121
            G+  T AL A+P++ +++R++V+TTFD DE V +ALR+GA GFL K A++  L+ AV A 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  YQGDALVSPSVTVRLLRHL-----TppapprderrpaLSereievvreiARGRTNLEIGA  176
             +GD+ +S++ +  ++ +L     ++       R ++L++RE +VV   ARG  N+ I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELFISLSTVKSHVSAVQTKLGLRNRTEI  204
            +LFIS +TVK+H++   TKL  R+R ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

1157) ML5_5324 in NC_014815


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.4 bits (259),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 94/208 (46%), Positives = 144/208 (70%), Gaps = 8/208 (3%)

Query  3    IRVLLADDQAMVRGGLRLILEDQPDITvvaeaadgvdavaqaRRLRPDVCLVDIRMPRLD  62
            I V+L DDQAM+R+GLR ILED ++I V++EAADG  A A  R  RPDV L+D+RMP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GLQVTRAL-AGPEVADPLRVVVVTTFDLDEYVYgalrggaagfllKDAGPALLVEAVRAA  121
            G+  T AL A+P++ +++R++V+TTFD DE V +ALR+GA GFL K A++  L+ AV A 
Sbjct  61   GVGATAALRADPDL-NAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  YQGDALVSPSVTVRLLRHL-----TppapprderrpaLSereievvreiARGRTNLEIGA  176
             +GD+ +S++ +  ++ +L     ++       R ++L++RE +VV   ARG  N+ I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELFISLSTVKSHVSAVQTKLGLRNRTEI  204
            +LFIS +TVK+H++   TKL  R+R ++
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQL  207

1158) BLASA_2133 in NC_016943


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 73.1 bits (258),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 88/212 (42%), Positives = 131/212 (62%), Gaps = 14/212 (6%)

Query  1    MTRVLVADDHAGFRAGITTLLRSLPGIEVVGEAASGDEA--VVRAVASGADVVLMDLAMP  58
            M  V++ DD+A +RAG+  +L   +GI V+GEAA G  A  V+R+  S +DVVLMDL MP
Sbjct  1    MIDVVLVDDQAMIRAGLRGILED-AGIRVIGEAADGRSAFAVIRG--SRPDVVLMDLRMP  57

Query  59   GGGGLAATERLVREAPH---VAVLVLTMSAEDASVTAALRAGARGYLVKGASRAEVGRAL  115
              +G++AT  L R  P+   V +LVLT    D  V AALRAGA G+L K+A    +  A+
Sbjct  58   ILDGVGATAAL-RADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV  116

Query  116  QTvadggmvvgaavahrvaal----vggPAGLE-HEHLADLSTREREVLELMAQGLDNGE  170
            ++VA G+  ++A+ A  V +       +++++E   + A L+ RE +V+   A+GLDN  
Sbjct  117  EAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  171  IARRLFLSPKTVRNVVSAIFGKLHTSDRVQVV  202
            IAR LF+SP TV+  ++    KLH+ DR Q+V
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQLV  208

1159) SHJG_8263 in NC_017765


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.6 bits (256),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 91/212 (43%), Positives = 137/212 (65%), Gaps = 16/212 (7%)

Query  13   VRILVCDDHAVVRAGLLALLHSAPDIevvgeagsgeealalaRKTAPDVVLMDLQLGEGI  72
            + +++ DD+A++RAGL ++L+ A +I V+GEA+ G  A+A+ R + PDVVLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  73   DGVETTRRLRAEP--SAPHVLVLttydtdadvtravdagatGYLLKAERAEDLFTAIHAA  130
            DGV +T  LRA+P  +A ++LVLTT+D D +V  A+ AGA G+L K+  +E L++A++A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  AQGRPALSPPVADRVMSrlrnprptltprEL----DILSH--------LSRGLSNHAIAR  178
            A+G  +LS+  A  V+S LR    + T  EL      L+H         +RGL N +IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ALYISEATVKTHLRRIYDKLGVDTRAGAVAVA  210
             L+IS ATVKTHL R   KL    R+  V++A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1160) SHJGH_8024 in NC_020895


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.6 bits (256),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 91/212 (43%), Positives = 137/212 (65%), Gaps = 16/212 (7%)

Query  13   VRILVCDDHAVVRAGLLALLHSAPDIevvgeagsgeealalaRKTAPDVVLMDLQLGEGI  72
            + +++ DD+A++RAGL ++L+ A +I V+GEA+ G  A+A+ R + PDVVLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  73   DGVETTRRLRAEP--SAPHVLVLttydtdadvtravdagatGYLLKAERAEDLFTAIHAA  130
            DGV +T  LRA+P  +A ++LVLTT+D D +V  A+ AGA G+L K+  +E L++A++A 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  131  AQGRPALSPPVADRVMSrlrnprptltprEL----DILSH--------LSRGLSNHAIAR  178
            A+G  +LS+  A  V+S LR    + T  EL      L+H         +RGL N +IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  ALYISEATVKTHLRRIYDKLGVDTRAGAVAVA  210
             L+IS ATVKTHL R   KL    R+  V++A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1161) B737_2384 in NC_022116


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/172 (45%), Positives = 113/172 (66%), Gaps = 9/172 (5%)

Query  48   HPDVVLVDLRMPRCDGVEATKRIRAGH--PGTEVVVLTTYADDESllaalragargflTK  105
            +PDVVL+DLRMP  DGV AT  +RA+    +  ++VLTT+ +DE +LAALRAGA GFL+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  106  DADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVE------GLTARELEV  159
             AD+ES+  A+ + A G++++ +   + +V    R + +   +VE       LT RE +V
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTATLTHRETDV  164

Query  160  LRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI  211
            +   A GL N  IAR L +S ATVKTH+N+  +K   RDR+Q V++A+R+G+
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1162) RAM_12260 in NC_017186


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/172 (45%), Positives = 113/172 (66%), Gaps = 9/172 (5%)

Query  57   HPDVVLVDLRMPRCDGVEATKRIRAGH--PGTEVVVLTTYADDESllaalragargflTK  114
            +PDVVL+DLRMP  DGV AT  +RA+    +  ++VLTT+ +DE +LAALRAGA GFL+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  115  DADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVE------GLTARELEV  168
             AD+ES+  A+ + A G++++ +   + +V    R + +   +VE       LT RE +V
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTATLTHRETDV  164

Query  169  LRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI  220
            +   A GL N  IAR L +S ATVKTH+N+  +K   RDR+Q V++A+R+G+
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1163) AMES_2383 in NC_018266


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/172 (45%), Positives = 113/172 (66%), Gaps = 9/172 (5%)

Query  48   HPDVVLVDLRMPRCDGVEATKRIRAGH--PGTEVVVLTTYADDESllaalragargflTK  105
            +PDVVL+DLRMP  DGV AT  +RA+    +  ++VLTT+ +DE +LAALRAGA GFL+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  106  DADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVE------GLTARELEV  159
             AD+ES+  A+ + A G++++ +   + +V    R + +   +VE       LT RE +V
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTATLTHRETDV  164

Query  160  LRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI  211
            +   A GL N  IAR L +S ATVKTH+N+  +K   RDR+Q V++A+R+G+
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1164) AMED_2410 in NC_014318


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.3 bits (255),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 76/172 (45%), Positives = 113/172 (66%), Gaps = 9/172 (5%)

Query  48   HPDVVLVDLRMPRCDGVEATKRIRAGH--PGTEVVVLTTYADDESllaalragargflTK  105
            +PDVVL+DLRMP  DGV AT  +RA+    +  ++VLTT+ +DE +LAALRAGA GFL+K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  106  DADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVE------GLTARELEV  159
             AD+ES+  A+ + A G++++ +   + +V    R + +   +VE       LT RE +V
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRS-ATDVELIARTATLTHRETDV  164

Query  160  LRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI  211
            +   A GL N  IAR L +S ATVKTH+N+  +K   RDR+Q V++A+R+G+
Sbjct  165  VLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGL  216

1165) L083_5231 in NC_021191


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.1 bits (254),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 87/194 (45%), Positives = 125/194 (65%), Gaps = 6/194 (3%)

Query  1    MIRVLVADDQATVRDGLVTLLGLAEGIEVVGAAPDGLEAVRLALDLRPDVVLMDLRMPRL  60
            MI V++ DDQA +R GL  +L    GI V+G A+DG  A  +  + RPDVVLMDLRMP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGagatarilaaapatavlvlttya--DDESlagalragargYLTKDAGRAELTAAVRSV  118
            DG GATA + A +   AV +L   +  +DE + +ALRAGA G+L+K A+   L AAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  ASGQATFAAGIADRLVRGFTAAGPRPG---LRERFPALTAREADVLEAITLGHNNARIAA  175
            A G+++++AG A  +V ++   G  +    L  R ++LT RE+DV+ + + G +N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  176  DLFLSVATVKSYIN  189
            DLF+S ATVK+ +N
Sbjct  180  DLFISPATVKTHLN  193

1166) Amir_4995 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 72.1 bits (254),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 93/219 (43%), Positives = 146/219 (67%), Gaps = 5/219 (2%)

Query  1    MIRVVVVDDEPMVCAHLRVILGGADDVEVVAEAQDGAEAVEAVVRHRPDLVLMDLRMPGV  60
            MI VV+VDD++M+ A LR IL +A+ + V++EA DG  A   +   RPD+VLMDLRMP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDAG-IRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGLAATG--RIAAlpdpppvvvlttfdtdGHVlaalragaagfllKTTAPHDLVELVRVA  118
            DG++AT+  R  +  ++  ++VLTTFD D +VLAALRAGA GFL K++ ++ L+  V   
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGHTVLspaatarlvaa--ssagrrrdadarvrlralSERDLEVLTRLGRGLSNADIAR  176
            A G+T LS++A+  +V+     +    D +   R  +L++R+ +V+   +RGL N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  177  ELFLSEATVKSYVSRMLVKIDCRNRTQAGVLAHEAGLVD  215
            +LF+S ATVK+ ++R + K++ R+R Q   +A  +GLV+
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1167) 2SC6G5.21c; chiR in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 71.0 bits (250),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 86/194 (45%), Positives = 131/194 (68%), Gaps = 7/194 (3%)

Query  1    MIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEQAVALARELRPDLVLMDVQMPRM  60
            MI V++ +DQ+ +RAGL  IL  A +I V+GEAADG  A A+ R  RPD+VLMD++MP +
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGVSATRIVVGE-QLADV--LVLTTFDLDEYVfgalragaagfllKNTDARDLLAAVRTV  117
            DGV+AT  + ++ +L  V  LVLTTFD DE V++ALRAGA GFL K++D+  L+AAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  AGGEGIVAPAVTRRLIAEFAAKPVREPTADPAvlreltrrerevlSCLGE--GLSNAAVA  175
            A G+  ++++ ++ +++++  +  R +T    + R  T  +RE    LG   GL N ++A
Sbjct  120  AKGDTSLSAGAAKTVVSDL-RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIA  178

Query  176  ERLDMAEATVKTHV  189
              L ++ ATVKTH+
Sbjct  179  RDLFISPATVKTHL  192

1168) SACTE_4572 in NC_015953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 71.0 bits (250),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 91/211 (44%), Positives = 139/211 (66%), Gaps = 14/211 (6%)

Query  3    IRVLVAEDQSAVRAGLALILGSAPDIevvgeaadgeaavRLARELRPDVVLMDVQMPRLD  62
            I V++ +DQ+ +RAGL  IL  A +I V+GEAADG +A  + R  RPDVVLMD++MP LD
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  63   GVSATRQVVAER-LADV--LVLTTFDLDAYVfgalragaagfllKNTEAHDLLDAVRTVA  119
            GV+AT  + A+  L  V  LVLTTFD D  V++ALRAGA GFL K+++++ L+ AV +VA
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  120  GGEGMIAPAVTRRLIAEFAGATAARDGAPDPAV-----LDALTRREREVLGCLGQGLSNA  174
             G+  ++++ ++ +++++      R G +   V       +LT+RE +V+   ++GL N 
Sbjct  121  KGDTSLSAGAAKTVVSDL-----RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV  175

Query  175  EIAGRLSMAEATVKTHVSRLLGKLELRSRVQ  205
             IA  L ++ ATVKTH++R + KL+ R R Q
Sbjct  176  SIARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1169) Oter_1682 in NC_010571


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 68.9 bits (242),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 139/210 (67%), Gaps = 9/210 (4%)

Query  4    IRLLLVDDQSLFREGLRLLLAQQPDLeivaeaangeeaiaaaQRLAPAVVLMDLRMPVMN  63
            I ++LVDDQ+++R GLR +L +++++ +++EAA+G  A+A  +   P VVLMDLRMP+++
Sbjct  2    IDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILD  60

Query  64   GVEATRRLMAGN--FAGRILVLTTFEEDEEVFaalaagaagyllkaSPSDKLIAAIRLTA  121
            GV AT  L A+    A RILVLTTF+ DEEV+AAL AGA G+L K++ S+ LIAA+   A
Sbjct  61   GVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVA  120

Query  122  RGESFLEPSVTAKVLAHFSrlaqqaprppkpppplaeplSVREREVLGLLAEGRS--NKE  179
            +G++ L ++ +  V++++     +  R++     +A   ++ +RE   +L+ +R+  N  
Sbjct  121  KGDTSLSAGAAKTVVSDLR----RRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  180  IASALAIAEGTVKNHMSNVLGKLGALDRTQ  209
            IA  L I+ +TVK H++  + KL A DR Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1170) CMS_0026 in NC_010407


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 67.9 bits (238),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 71/176 (41%), Positives = 98/176 (56%), Gaps = 14/176 (7%)

Query  63   PDVVLLDIRMPAPDGLTILAELMAEPRPPAVAML--TTFDTDDQVLEALHRGASGFLLKD  120
            PDVVL+D+RMP  DG+   A L A+P   AV +L  TTFD D++VL AL+ GA GFL K 
Sbjct  47   PDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKS  106

Query  121  TDPEQLARHVLTLASGGIVLAPGL---------RPGRLFrsreddaerarvarLGDRELV  171
            +D+E L   V ++A G+  L++G          R GR   S  D    AR A L +RE  
Sbjct  107  ADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGR---SATDVELIARTATLTHRETD  163

Query  172  VLKALARGLSNAEIVAASGLTLGTVKETVSSIVQALGVRTRVEAAVVADRAGLVPR  227
            V+ + ARGL N  I     ++ +TVK  ++  +  L  R R +   +A R+GLV R
Sbjct  164  VVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVNR  219

1171) chiR in NC_016109


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 65.8 bits (230),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 130/209 (63%), Gaps = 10/209 (4%)

Query  1    MIRVLVAEDQAAVRAALVMILRAEDDLEVVGEAADGEQAVRLALELRPDVVLMDIQMPRL  60
            MI V++ +DQA +RA+L  IL  + ++ V+GEAADG  A  +    RPDVVLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGIL-EDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   Dgvaatrqvvaagaaqvlvl---tTFDLDAYVWgalragaagfllKDLEAEALVDGVRTV  117
            DGV+AT  + A    + + +   TTFD D  V +ALRAGA GFL K  ++E+L+ +V +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  118  ARGDGMLAPSVTRRLISSFARPGAPDP----VGPGALDGLTPKEREVLGCLGAGLSNAEI  173
            A+GD  L+++ ++ ++S + R G +      ++  A   LT +E +V+   + GL N  I
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTA--TLTHRETDVVLGAARGLDNVSI  177

Query  174  ALRLRTAEATTKTHVSRILAKLGLRSRVQ  202
            A  L  + AT KTH++R ++KL  R R Q
Sbjct  178  ARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1172) SC10F4.21c in NC_003888


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 62.9 bits (219),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 72/170 (43%), Positives = 106/170 (63%), Gaps = 14/170 (8%)

Query  35   RPDVVLMDVRMPGRDGLDTTRELLARP--APPRVLMLTTFDSDDLVlgalragalgFVLK  92
            RPDVVLMD+RMP  DG+++T  L A P   + R+L+LTTFD+D+ VL+ALRAGA GF+ K
Sbjct  46   RPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAK  105

Query  93   DTPPPRILDAVRTVADGHPALSPaatarviaaaTGPDSSHSRDRTREAAR----ERLSVL  148
             + +  ++ AV +VA G+ +LS++A+  V+        S+ R R R A+      R + L
Sbjct  106  SADSESLIAAVEAVAKGDTSLSAGAAKTVV--------SDLRRRGRSATDVELIARTATL  157

Query  149  TEREWETARAVADGLGNPEIAERLHITVATVKAHTGSLFAKLGVENRVQI  198
            T+RE +   + A GL+N  IA  L I+ ATVK+H     +KL   +R Q+
Sbjct  158  THRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

1173) Ndas_2780 in NC_014210


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 60.0 bits (208),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 136/210 (65%), Gaps = 6/210 (2%)

Query  1    MIRTLLVDDELLVRSGLRMILDSAPDIevvgeggdgaeavRLAEELAPDVVLLDIRMPGT  60
            MI  +LVDD+ ++R+GLR IL+ A +I V+GE++DG  A  +     PDVVL+D+RMP  
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  61   DGItaaar--ltalprpprvvllttFDLDEYVHSALRAGAVGFLLKDTPPRDLIGAVRTV  118
            DG+ A+A     +   + R+++LTTFD DE V +ALRAGA GFL K + +  LI+AV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  HEGNAMLAPSVTKRMLERFaapapadsaagraeavrrlsvlserersvllAVARGRSNAE  178
              G++ L+++ +K ++  +      + +A   E + R + L++RE  V+L+ ARG  N  
Sbjct  120  AKGDTSLSAGAAKTVVSDL---RRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVS  176

Query  179  AGRDLGMREATVKAHVSRILAKLDMSNRVQ  208
             +RDL +  ATVK+H++R ++KL+  +R Q
Sbjct  177  IARDLFISPATVKTHLNRAMTKLHARDRGQ  206

1174) Strvi_7498 in NC_015957


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 58.7 bits (203),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 68/169 (41%), Positives = 107/169 (64%), Gaps = 12/169 (7%)

Query  53   RPDVVLMDVRMPGRDGLSTTRELLTRRPAP-----RVLMLTTFDSDDLVlgalragalgF  107
            RPDVVLMD+RMP  DG+++T  L   R+ P     R+L+LTTFD+D+ VL+ALRAGA GF
Sbjct  46   RPDVVLMDLRMPILDGVGATAAL---RADPDLNAVRILVLTTFDGDEEVLAALRAGADGF  102

Query  108  VLKDTQPPQILDAVRTVADGNPVLSPaatarviaaaTGPQsaharrssreaarKQLSALT  167
            + K +++  ++ AV +VA G+  LS++A+  V     +    ++R ++      + ++LT
Sbjct  103  LAKSADSESLIAAVEAVAKGDTSLSAGAAKTV----VSDLRRRGRSATDVELIARTATLT  158

Query  168  ERERETARAIADGLGNPEIAQRLHISVATVKAHTSSLFAKLAVENRVQI  216
            +RE +   + A GL+N  IA+ L IS ATVK+H +   +KL   +R Q+
Sbjct  159  HRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQL  207

1175) NOCYR_1692 in NC_016887


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 57.1 bits (197),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 87/212 (42%), Positives = 136/212 (65%), Gaps = 15/212 (7%)

Query  6    VRLLICDDHVVVRAGLRALLDSAPDIDvvgeagsgaevvamagaLHPDVVLMDLQLGGEF  65
            + +++ DD+ ++RAGLR++L+ A +I V+GEA+ G    A+  + +PDVVLMDL++   +
Sbjct  2    IDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMP-IL  59

Query  66   DGVEATRRITALPEPRP-HVLVLttfdtdaditraiaagatgYLLKAEPPEELFaaihta  124
            DGV AT  + A P+  + ++LVLTTFD D ++  A+ AGA G+L K+  +E L+AA+++ 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  125  aaghtaLSAPVAGRVMARMR------------DPRPGLTARESDILAQLAHGLGNREIAR  172
            A G+T+LSA  A  V++ +R               + LT RE+D++   A+GL+N  IAR
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  173  ALHISEATVKTHLGRIYAKLGVDTRAAAVAVA  204
             L IS ATVKTHL R  +KL    R+  V++A
Sbjct  180  DLFISPATVKTHLNRAMTKLHARDRGQLVSIA  211

1176) BN6_28050 in NC_019673


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 56.1 bits (193),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 130/200 (65%), Gaps = 16/200 (8%)

Query  4    IRLLLADDHPVVRAGLRAVLETEPdlvvvaeaataeqavalaaeldvdvvLMDLQFGEGM  63
            I ++L DD++++RAGLR++LE ++++ V++EAA +  A A+      DVVLMDL+    +
Sbjct  2    IDVVLVDDQAMIRAGLRGILE-DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPI-L  59

Query  64   NGSQATAAISALPD--APRVLVVTTYDTDADTLPAIEAGATGYLLKDAPpeelaaavrta  121
            +G  ATAA+ A PD  A R+LV+TT+D D + L+A+ AGA G+L K A +E L AAV + 
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  122  aagrtalapavaDRLMNRLRTPG------------TALTRRETEVLSLVAEGLSNHAIGA  169
            A G T+L+++ A  +++ LR  G            ++LT+RET+V+   A GL N +I+ 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  170  RLDLTLATVKSHLVHIYAKL  189
             L ++ ATVK+HL +  +KL
Sbjct  180  DLFISPATVKTHLNRAMTKL  199

1177) XNR_1456 in NC_020990


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 55.8 bits (192),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 131/199 (66%), Gaps = 4/199 (2%)

Query  2    VIRVVVAEDQSAVRAGLVLILGSAPDIevageaadgeaavRLAEELRPDVVLMDVQMPRL  61
            +I VV+ +DQ+ +RAGL  IL  A +I V GEAADG +A  +    RPDVVLMD++MP L
Sbjct  1    MIDVVLVDDQAMIRAGLRGILEDA-GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPIL  59

Query  62   DGVSATRAVVAG---GWADVLVLTTFDLDEYVfgalragaagfllKNTDAPGLLAAVRTV  118
            DGV+AT A+ A+       +LVLTTFD DE V++ALRAGA GFL K++D+ +L+AAV +V
Sbjct  60   DGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAV  119

Query  119  AAGEGLIAPAVTRRLIaafatgraprpagaeppelaaltRREREVLGCLGEGLSNARIAE  178
            A G+  ++++ ++ +++ +     +       +  A+LT+RE +V+   + GL N  IA 
Sbjct  120  AKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIAR  179

Query  179  RLEMAEATAKTHVSRVLGK  197
             L ++ AT KTH++R + K
Sbjct  180  DLFISPATVKTHLNRAMTK  198

1178) Sare_2352 in NC_009953


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 54.7 bits (188),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 84/197 (43%), Positives = 124/197 (63%), Gaps = 7/197 (3%)

Query  35   EADLDVVAEASNGTEAVELTRRLLPDVVLMDARTPPRAGVVATRAI-VESGL-PVRVLIL  92
            +A++ V++EA++G  A  + R   PDVVLMD R P   GV AT A+  +++L +VR+L+L
Sbjct  23   DAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGATAALRADPDLNAVRILVL  82

Query  93   TTSDFDayvvgalragargflaKDVPSADLSaairavaagdavvaPRILDRFLDHLAELL  152
            TT D D  V++ALRAGA GFLAK   S  L AA+ AVA GD+ +++      + +L    
Sbjct  83   TTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRR--  140

Query  153  PDPAAGPTRLLD---PLTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLR  209
             + +A    L+     LT RE +V++  ARG  N  IA+ L +S +TVKTH+ + +TKL+
Sbjct  141  RGRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLH  200

Query  210  LRDRVQAVVLAYESGLI  226
             RDR Q V +A+ SGL+
Sbjct  201  ARDRGQLVSIAFRSGLV  217

1179) GPOL_c24470 in NC_016906


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 54.0 bits (185),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 69/171 (41%), Positives = 98/171 (58%), Gaps = 14/171 (8%)

Query  1    MVLMDLRLGPGLSGVEttrr--lltlrpvprvlvvtNHDTDADILAAIEAGASGYLLKDT  58
            +VLMDLR+ P L GV +T            R+LV+T  D D ++LAA+ AGA G+L K +
Sbjct  49   VVLMDLRM-PILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSA  107

Query  59   PPTELIaavhaaaagesaLSP----MVATRLMSRMRAPAD-------AVLTAREIDVLVE  107
             +  LIAAV+A A G+++LS+     V + L  R R+++D       A LT RE DV++ 
Sbjct  108  DSESLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGRSATDVELIARTATLTHRETDVVLG  167

Query  108  VAAGHSNREIAKRLLLSEMTVKSHLVHIFSKLGVRSRTAAVDRARRDGLIG  158
             A G  N  IA+ L++S  TVK+HL +  +KL  R R   V  A R GL+ 
Sbjct  168  AARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLVN  218

1180) Sfla_6421 in NC_016114


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 47.7 bits (161),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 112/185 (61%), Gaps = 5/185 (2%)

Query  12   GITVTGTASDGEEAVEACARLRPDVLLMDIRMPRRDGLWALVElgrrsllgpgrsrvlML  71
            GI V G A+DG  A       RPDV+LMD+RMP  DG+ A    + R+  +    R+L+L
Sbjct  25   GIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGVGA--TAALRADPDLNAVRILVL  82

Query  72   TTFdldayvddalaagaSGFLLKNSSYEELTGAVRAAVAGHSALSPAVTQRIIEGHLRGR  131
            TTFD D  V  AL AGA GFL K++  E L +AV A   G+++LS++ ++ ++ ++LR R
Sbjct  83   TTFDGDEEVLAALRAGADGFLAKSADSESLIAAVEAVAKGDTSLSAGAAKTVV-SDLRRR  141

Query  132  -RRPSDQDL-ARLRDLTEREIDVLRLIRDGLSNAEIAERlvvslhtvsthvsRVLTKTGC  189
             R ++D +L AR   LT+RE DV+     GL N  IA  L +S  TV TH++R +TK   
Sbjct  142  GRSATDVELIARTATLTHRETDVVLGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHA  201

Query  190  QSRAQ  194
            + R+Q
Sbjct  202  RDRGQ  206

1181) Amir_3314 in NC_013093


> NC_009480_P1|69|G58|148271269|YP_001220830.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|-|94087..94758|regB|CMM_0091|putative 
two-component system response regulator
Length=223

 Score = 38.5 bits (126),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 69/158 (44%), Positives = 91/158 (58%), Gaps = 6/158 (3%)

Query  55   LMDARMPGRDGVSATAEIRTRPDPPAV--LVLTTFDSDELVlgalragalgFVLKDTPPa  112
            LMD RMP  DGV+ATA +R+ PD  AV  LVLTTFD+DE VL+ALRAGA GF+ K + + 
Sbjct  51   LMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSE  110

Query  113  riaeavrtaaaGEPVLSPQAVVRLIAAATGPGSgearrgvreaarerlagltereleVAR  172
             +  AV + A G+  LS+ A   +++     G      +       R A LT+RE +V  
Sbjct  111  SLIAAVEAVAKGDTSLSAGAAKTVVSDLRRRGR----SATDVELIARTATLTHRETDVVL  166

Query  173  GIAEGLGNPEIAARLGIGVATVKAHTGNLFGKLGVDNR  210
            G A GL+N  IA  L I+ ATVK+H      KL   +R
Sbjct  167  GAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDR  204