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Homologs of c5208 gene of NC_004431_P2

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ibrB
( - )

NC_011742
(Escherichia coli S88)

0.0

100

2) EcSMS35_1126
( - )

NC_010498
(Escherichia coli SMS-3-5)

e-232

86.3

3) CP0104
( - )

NC_004851
(Shigella flexneri 301)

e-183

90.3

4) ibrB
( - )

NC_011750
(Escherichia coli IAI39)

e-169

86.7

• Sequence Alignments

1) ibrB in NC_011742


>NC_004431_P2|69|G69|26251016|NP_757056.1|Escherichia_coli_CFT073|-|48918..49481|-|c5208|hypothetical 
          Length = 564

 Score = 1107 bits (2858), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

Query: 1   atgggggattctgtgacacctgaagtggaggtactgagtgacatgattcgtcagtacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgggggattctgtgacacctgaagtggaggtactgagtgacatgattcgtcagtacttc 60

Query: 61  agccaggaacgatcagaaaaagagactatacaggctctgaatcatctgcgcagggtactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agccaggaacgatcagaaaaagagactatacaggctctgaatcatctgcgcagggtactt 120

Query: 121 catgaagtcagcccttttgcacaggagcctgtggactgtgtgctgtgggtgaaagcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgaagtcagcccttttgcacaggagcctgtggactgtgtgctgtgggtgaaagcagat 180

Query: 181 gaggtggtggccaacgattataaccccaatgtcatggcgccgggtgagaagaaactgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggtggtggccaacgattataaccccaatgtcatggcgccgggtgagaagaaactgctg 240

Query: 241 aagcagtcactggagaaagatggtttcacccaacccgtggtggtgtcggcggagaagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagcagtcactggagaaagatggtttcacccaacccgtggtggtgtcggcggagaagaac 300

Query: 301 ccctatctggtggtggatggttttcatcgtcagttactgggcagggaagcaggtacagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctatctggtggtggatggttttcatcgtcagttactgggcagggaagcaggtacagga 360

Query: 361 aaacgcctgaaaggctggttgccagtggcctgtattaatccggaaagaaagggacaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaacgcctgaaaggctggttgccagtggcctgtattaatccggaaagaaagggacaggcc 420

Query: 421 acacgtatggcggccaccatacggcataaccgggccaggggtaaacaccagataacctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acacgtatggcggccaccatacggcataaccgggccaggggtaaacaccagataacctca 480

Query: 481 atgtctgatattgtcagggacctgtcacgcctgggctggacggatgaacgcattggtaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtctgatattgtcagggacctgtcacgcctgggctggacggatgaacgcattggtaca 540

Query: 541 gagcctggggatggaccaggatga 564
           ||||||||||||||||||||||||
Sbjct: 541 gagcctggggatggaccaggatga 564

2) EcSMS35_1126 in NC_010498


>NC_004431_P2|69|G69|26251016|NP_757056.1|Escherichia_coli_CFT073|-|48918..49481|-|c5208|hypothetical 
          Length = 564

 Score = 802 bits (2068), Expect = e-232
 Identities = 455/527 (86%)
 Strand = Plus / Plus

Query: 1   atgggggattctgtgacacctgaggtggaagtattgagcaacatgattcgacagtacttc 60
           ||||||||||||||||||||||| ||||| ||| ||||  |||||||||| |||||||||
Sbjct: 1   atgggggattctgtgacacctgaagtggaggtactgagtgacatgattcgtcagtacttc 60

Query: 61  agtcaggaacgatctgaagaagagaccatacgagcccttaatcatctgcgcagggtgttg 120
           || ||||||||||| ||| ||||||| ||||  || || |||||||||||||||||  | 
Sbjct: 61  agccaggaacgatcagaaaaagagactatacaggctctgaatcatctgcgcagggtactt 120

Query: 121 catgaggtcagcccttttgcacaggagcctgtggactgtgtgttgtgggtgaaagcgaat 180
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||
Sbjct: 121 catgaagtcagcccttttgcacaggagcctgtggactgtgtgctgtgggtgaaagcagat 180

Query: 181 gaggtggtggccaacgattacaatcccaatgtcatgtcttccagtgaaaaaaaactgctt 240
           |||||||||||||||||||| || |||||||||||| |  |  |||| || |||||||| 
Sbjct: 181 gaggtggtggccaacgattataaccccaatgtcatggcgccgggtgagaagaaactgctg 240

Query: 241 aaacattcactggagcaggatggattcacgcagcctgtggtggtttcggaagagaaggag 300
           || || ||||||||| | ||||| ||||| || || |||||||| ||||  |||||| | 
Sbjct: 241 aagcagtcactggagaaagatggtttcacccaacccgtggtggtgtcggcggagaagaac 300

Query: 301 cattatctggtagtggatggttttcatcgtcagttgctgggcaggaaagcggatacgaga 360
           |  |||||||| ||||||||||||||||||||||| ||||||||| |||| | |||  ||
Sbjct: 301 ccctatctggtggtggatggttttcatcgtcagttactgggcagggaagcaggtacagga 360

Query: 361 aaacgtctgaagggctggctgccagtggcctgtattaatccagagagaaagggataggca 420
           ||||| ||||| |||||| |||||||||||||||||||||| || ||||||||| |||| 
Sbjct: 361 aaacgcctgaaaggctggttgccagtggcctgtattaatccggaaagaaagggacaggcc 420

Query: 421 tcacgtattgccgcgaccatacggcataaccgtgccaggggaaaacaccagataacgtca 480
            ||||||| || || ||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct: 421 acacgtatggcggccaccatacggcataaccgggccaggggtaaacaccagataacctca 480

Query: 481 atgtctgacattgtcagggacctttcgcgtctgggctggacagatga 527
           |||||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 481 atgtctgatattgtcagggacctgtcacgcctgggctggacggatga 527

3) CP0104 in NC_004851


>NC_004431_P2|69|G69|26251016|NP_757056.1|Escherichia_coli_CFT073|-|48918..49481|-|c5208|hypothetical 
          Length = 564

 Score = 637 bits (1643), Expect = e-183
 Identities = 349/389 (90%)
 Strand = Plus / Plus

Query: 35  acatgattcgtcagtatttcagtcaggtacgaactgaaaaagagagcatacaggctctga 94
           |||||||||||||||| ||||| |||| |||| | ||||||||||  |||||||||||||
Sbjct: 41  acatgattcgtcagtacttcagccaggaacgatcagaaaaagagactatacaggctctga 100

Query: 95  atcatctgcgcagagtgcttcatgaggtcagtccttttgcacaggagcctgtggactgtg 154
           ||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 101 atcatctgcgcagggtacttcatgaagtcagcccttttgcacaggagcctgtggactgtg 160

Query: 155 tgttgtgggtgaaagcggatgaggtggtggccaacgattacaaccctaatgtcatggcac 214
           || ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 161 tgctgtgggtgaaagcagatgaggtggtggccaacgattataaccccaatgtcatggcgc 220

Query: 215 taggtgagaaaaaactactgaaacagtctctggagaaagatggtttcacacaaccggtgg 274
             |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct: 221 cgggtgagaagaaactgctgaagcagtcactggagaaagatggtttcacccaacccgtgg 280

Query: 275 tggtgtcagaggagaagaatcattatctggtggtggatggttttcatcgtcagttactgg 334
           ||||||| | ||||||||| |  |||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggtgtcggcggagaagaacccctatctggtggtggatggttttcatcgtcagttactgg 340

Query: 335 ggcgggaagcagatgcaggaaaacgcctgaggggctggttgcctgtagcctgcattaatc 394
           |  ||||||||| | |||||||||||||||  ||||||||||| || ||||| |||||||
Sbjct: 341 gcagggaagcaggtacaggaaaacgcctgaaaggctggttgccagtggcctgtattaatc 400

Query: 395 cggagagaaagggacaggccgcacgtatg 423
           |||| ||||||||||||||| ||||||||
Sbjct: 401 cggaaagaaagggacaggccacacgtatg 429


 Score = 194 bits (500), Expect = 2e-49
 Identities = 109/120 (91%)
 Strand = Plus / Plus

Query: 438 cataaccgggccagggggaaacaccagatcactttaatgtctgatattgtcagggatctt 497
           ||||||||||||||||| ||||||||||| || | ||||||||||||||||||||| || 
Sbjct: 445 cataaccgggccaggggtaaacaccagataacctcaatgtctgatattgtcagggacctg 504

Query: 498 tcacgtctgggctggacgaatgaacgtattggtacagagc-tgggaatggaccaggatga 556
           ||||| |||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 505 tcacgcctgggctggacggatgaacgcattggtacagagcctggggatggaccaggatga 564


 Score = 37 bits (95), Expect = 2e-02
 Identities = 19/20 (95%)
 Strand = Plus / Plus

Query: 1  atgggggactctgtgacacc 20
          |||||||| |||||||||||
Sbjct: 1  atgggggattctgtgacacc 20

4) ibrB in NC_011750


>NC_004431_P2|69|G69|26251016|NP_757056.1|Escherichia_coli_CFT073|-|48918..49481|-|c5208|hypothetical 
          Length = 564

 Score = 592 bits (1527), Expect = e-169
 Identities = 339/393 (86%)
 Strand = Plus / Plus

Query: 1   gtggactgtgtgttgtgggtgaaagcggatgaggtggtggccaacgattacaatcccaat 60
           |||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 151 gtggactgtgtgctgtgggtgaaagcagatgaggtggtggccaacgattataaccccaat 210

Query: 61  gtcatgtcttccagtgaaaaaaaactgcttaaacattcactggagcaggatggattcacg 120
           |||||| |  |  |||| || |||||||| || || ||||||||| | ||||| ||||| 
Sbjct: 211 gtcatggcgccgggtgagaagaaactgctgaagcagtcactggagaaagatggtttcacc 270

Query: 121 cagcctgtggtggtttcggaagagaaggagcattatctggtcgtggatggttttcatcgt 180
           || || |||||||| ||||  |||||| | |  |||||||| ||||||||||||||||||
Sbjct: 271 caacccgtggtggtgtcggcggagaagaacccctatctggtggtggatggttttcatcgt 330

Query: 181 cagttgctgggcaggaaagcggatacgagaaaacgtctgaagggctggctgccagtgacc 240
           ||||| ||||||||| |||| | |||  ||||||| ||||| |||||| |||||||| ||
Sbjct: 331 cagttactgggcagggaagcaggtacaggaaaacgcctgaaaggctggttgccagtggcc 390

Query: 241 tgtattaatccggaaagaaagggacaggcatcacgtattgccgcaaccatacggcataac 300
           |||||||||||||||||||||||||||||  ||||||| || || |||||||||||||||
Sbjct: 391 tgtattaatccggaaagaaagggacaggccacacgtatggcggccaccatacggcataac 450

Query: 301 cgtgccaggggaaaacaccagataacgtcaatgtctgacattgtcagggacctttcgcgt 360
           || |||||||| |||||||||||||| ||||||||||| |||||||||||||| || || 
Sbjct: 451 cgggccaggggtaaacaccagataacctcaatgtctgatattgtcagggacctgtcacgc 510

Query: 361 ctgggctggacagatgagcgtattggcacagag 393
           ||||||||||| ||||| || ||||| ||||||
Sbjct: 511 ctgggctggacggatgaacgcattggtacagag 543


 Score = 33 bits (85), Expect = 4e-01
 Identities = 18/19 (95%)
 Strand = Plus / Plus

Query: 395 tgggcatggaccaggatga 413
           |||| ||||||||||||||
Sbjct: 546 tggggatggaccaggatga 564