> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score = 1029 bits (3902),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 672/673 (99%), Positives = 673/673 (100%), Gaps = 0/673 (0%)

Query  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60
            MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120
            LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180
            GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240
            AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEEGRCLDqaaaaaalaalkssqaasTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300
            DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360
            QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420
            RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEANDSGGRSQILPVLQIGTRCDVQDLHLKS  480
            FECNAVLLQAVGKRIVIPGWKVLFSASSEEEA+DSGGRSQILPVLQIGTRCDVQDLHLKS
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540
            LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600
            KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTgkkkspg  660
            VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  661  ksakpraATVKSS  673
            KSAKPRAATVKSS
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  775 bits (2932),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/650 (67%), Positives = 556/650 (86%), Gaps = 2/650 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGARQRGNGCYSGSGITVTWCIGHLVEAAPPETYGEQYKQWS  60
            MR++LCEKPSQGKDIA VLGA+ RG+GC  G+G++VTW IGHL+E+APP++YGE+ K+WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRIEVKAKTAAQFKIVKQFVAQAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPILP  W++ VK+KTA+QFKIVKQ++ QA ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALTQLKPGGETLPLYFSALARSRADWLIGMNLSRLFTVLGRR  180
            GPIQRLWLSALN+ASIR+AL  +K G+ET PLY+SALARSRADWLIGMN+SRLFT+LGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWTIDVTLSHAGQSFAASWMPPDGTT  240
            +GY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L  AGQSF A W++ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPVAQQAADRIRAGRESKVLSVETERVREAAPLPFDLGTLQEVCSRQLGLDV  300
            D  GRCL+Q+ A  A   +++++ +  +SV+T R +++APLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKATTYPRSDSGYLPESMLAEVPTVLDALLATDPGLRPLIDRLDRTQ  360
            QETLD+AQSLYETHKATTYPR+D GYLPESM+ EVP VLDAL  TDP++   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRVWNDSKITA-HHGIIPTLEPANLSAMSEKELAVYALIRAHYLAQFLPHHEFDRTLVM  419
            RSR WND KIT+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRT+  
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LDCAGQSLQAVGKRVIVPGWHLALPGKGQDAADDEPAQRSQILPPLDTGARCGVQQVELK  479
            ++C +  LQAVGKR+++PGW + +++ +++ ADD ++ RSQILP L+ G+RC+VQ+++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADD-SGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKGVAKLVTDPRLKQKLKETTGIGTEATRAGIINGLLARGYL  539
            +LKT PPK+YT+G LIKAMK +AKLV DPRL QKLKETTGIGTEATRAG I+GL+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAIRASDAAFTLIDAVPAAITDPGTTAIWEQALDMIEAGQMTLDTFINKQSAWVAQ  599
            +KKG A+RA++AAF+LIDAVP+A++DPGTTAIWEQAL MIE G +TLD FI +QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGTVLSIKLPEGPACPVCGAATRQRNGKNGAFWSCSRYPDCKGTL  649
            LV+QY+GT LSIK+PEGP CP+C+A T QR+G +G FW+CSRYP+CKGT+
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2890),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/679 (63%), Positives = 559/679 (83%), Gaps = 9/679 (1%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+APP+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   VEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGQLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET ++Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++G +F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL Q+ A  ++  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLSAMSEKELAVYRLIRSHYLAQFLPHHEFDRTVAK  419
            RSRAWND K+T+ HHGIIPTLEPA+LSAMSEKE  VY LIR+H+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVA  479
            F C +  L A GK++VIPGW+ +++ +  E++D+ G+   R+Q+LP L     G  C+V 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQI---GTRCDVQ  474

Query  480  DVDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLI  539
            D++LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI
Sbjct  475  DLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLI  534

Query  540  ARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQA  599
             RG L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q+
Sbjct  535  DRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQS  594

Query  600  AWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESG  659
            +WI++L+ QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  595  SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

Query  660  SSKRG--ASRPRRSGRKGS  676
              K    +++PR +  K+S
Sbjct  655  KKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  764 bits (2893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/664 (63%), Positives = 555/664 (84%), Gaps = 1/664 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCGYR  120
            ++ LPI+P  W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWVSPDTCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L T+GQ+F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLPKTDFSLRPIIDQLDRTQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L +TD S+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTLEPANLSAMSEKELAVYKLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+++ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQVADVDLKA  479
            + C    L A GK++V+ GW+++++ +  EE  D+++RSQ+LP L+ G  C+V D++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTQPSRPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIISGLIARGYLM  539
            LKT+P+++YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  ITQYASASLSIKVPHGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVA  659
            + QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K  +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  660  SRSR  663
              ++
Sbjct  661  KSAK  664

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  763 bits (2889),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/673 (63%), Positives = 557/673 (83%), Gaps = 3/673 (0%)

Query  1    MKLFLCEKPSQGKDIGRVLGATQRGKGCLTGSGITITWCIGHLVEAAPPDAYGEQYKRWS  60
            M+L+LCEKPSQGKDI+ VLGA  RG GC+ G+G+++TW IGHL+E+APPDAYGE+ K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPERWRVDVKSKTASQFNVVKDLLSKASELVIATDADREGELIAREIIELCGYR  120
            ++ LPI+P  W+V VK+KTASQF++VK+LL +A+ELVIATDADREGE+IARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALATLRPSSETLPMYFSALARSRADWLIGMNLSRLFTVMGRQ  180
            GPIQRLWLSALN+ASIR+AL T++ +SET P+Y+SALARSRADWLIGMN+SRLFT++GRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIACFVSVPFWAVETTLSSEGQSFTAAWLAPDTAT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW+VE  L + GQSF A W+A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQESIARQAVERMRSAGSAQITSVETERMREGPPLPFDLGTLQEICSKQLGLDV  300
            D+ GRCL+++ A  A+  ++S+ +A   SV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPDSMFAEVPTVLDSLLKTDPGLRPLVDQLDRNQ  360
            QETL++AQ+LYETHKATTYPR+D GYLP+SMF EVP VLD+L +TDP++   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLKAMNDKERAVYMLIRAHYLAQFLPQHEFDRTTAR  419
            RSRAWND K+T+ HHGIIPTLEPANL AM++KER VY LIRAH+LAQFLP HE+DRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCAGETLQAVGKQVVVIGWRQVLAEPRPDDDGETTPRSQVLPALHEGLSCQITGIDCKA  479
            + C +  LQAVGK++V+ GW+ +++ +  ++ +++  RSQ+LP L+ G  C++ +++ K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTSPPRPYTQGELVKAMKGVAKLVADPRLKQKLKDTTGIGTEATRANIIKGLLDRGYLQ  539
            LKT PP++YT+G L+KAMK +AKLV DPRL QKLK+TTGIGTEATRA  I+GL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSVRASDAAFTLIDVVPGAIADPGMTAIWEQALDMIEAGQLTLDVFIDKQSAWITQL  599
            KKG ++RA++AAF+LID VP A+ADPG TAIWEQAL MIE G LTLD FI +QS+WIT+L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VQQYQGASLSIKVPQGPACPECGTAMRQRTGKSGPFWSCPRYPDCKGSQPIDNGKHKRA-  658
            V+QY+G++LSIKVP+GP CP C++   QR G SG FW+C+RYP+CKG+  I+ GK K + 
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  659  -MPRKRNSSTRAS  670
              ++ R ++ ++S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/664 (63%), Positives = 555/664 (84%), Gaps = 1/664 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCGYR  120
            ++ LPI+P  W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWVSPDTCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L T+GQ+F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQLDRTQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L +TD S+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTLEPANLSAMSEKELAVYKLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+++ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQVADVDLKA  479
            + C    L A GK++V+ GW+++++ +  EE  D+++RSQ+LP L+ G  C+V D++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTQPSRPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIISGLIARGYLM  539
            LKT+P+++YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  ITQYASASLSIKVPHGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVA  659
            + QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K  +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  660  SRSR  663
              ++
Sbjct  661  KSAK  664

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  763 bits (2887),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/664 (63%), Positives = 555/664 (84%), Gaps = 1/664 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCGYR  120
            ++ LPI+P  W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWISPDTCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L T+GQ+F A+W++ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQLDRTQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L +TD S+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTLEPANLSAMSEKELAVYKLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+++ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQVADVDLKA  479
            + C    L A GK++V+ GW+++++ +  EE  D+++RSQ+LP L+ G  C+V D++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTQPSRPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIISGLIARGYLM  539
            LKT+P+++YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  ITQYASASLSIKVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVA  659
            + QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K  +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  660  SRSR  663
              ++
Sbjct  661  KSAK  664

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  762 bits (2884),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/673 (61%), Positives = 565/673 (84%), Gaps = 3/673 (0%)

Query  1    MRLFLCEKPSQGKDIGRVLGTTQRGNGCLTGSGITVTWCIGHLVEAAPPETYGEQYKRWS  60
            MRL+LCEKPSQGKDI+ VLG+  RG+GC+ G+G++VTW IGHL+E+APP++YGE+ K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPECWRVEVKSKTASQFNVVKELLSKATELVIATDADREGELIAREIIELCGYR  120
            ++ LPI+P  W+V VK+KTASQF++VK+LL +ATELVIATDADREGE+IARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDTSIRKALSVLRPSDETLPMYFSALARSRADWLIGMNLSRLFTVLGRQ  180
            GPIQRLWLSALN++SIR+AL+ ++ + ET P+Y+SALARSRADWLIGMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWAVEVVLSSAGQHFTAAWLAPDTAA  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW+VEV L +AGQ F A W+A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DNAGRCLQEPIARQATERMRVTGSAQVTSVETEHMREGPPLPFDLGTLQEVCSRQLGLDV  300
            D+ GRCL+++ A  A   ++ + +A   SV+T + ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPIVFDSLLKTDPDLRPIVDLLDRNQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP+V+D+L +TDP +   ++L+D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLAAMSDKERAVYTLIRTHYLAQFLPHHEFDHTTAY  419
            RSRAWND K+T+ HHGIIPTLEPANL+AMS+KER VY LIR+H+LAQFLP HE+D+T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCAGEMLQAVGKQVVLVGWRRVLTEPKPDDDGDTTSRSQVLPPLNEGLSCQITGIDCKA  479
            + C + +LQAVGK++V+ GW+ +++ +  ++ +D+ +RSQ+LP L+ G  C++ +++ K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTSPPRPYTQGELVKSMKSVAKLVSDPRLKQTLKDTTGIGTEATRANIIKGLLDRGYLL  539
            LKT PP++YT+G L+K+MK++AKLV DPRL Q LK+TTGIGTEATRA  I+GL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSVRASDAAFTLIDAVPGAIADPGMTAIWEQALDMIESGQLTLDVFIDKQSAWIAQL  599
            KKG ++RA++AAF+LIDAVP A+ADPG TAIWEQAL MIE G LTLD FI +QS+WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IQQYRGASLSIQMPLGPACPECGTPMHQRPGKNGAFWSCPRYPDCRGSLPIDSGKRKR--  657
            ++QY+G++LSI++P GP CP C++   QR G +G FW+C+RYP+C+G++ I++GK+K   
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  658  TTPRKRNSSLQAS  670
             +++ R +++++S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  761 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/664 (63%), Positives = 554/664 (84%), Gaps = 1/664 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCGYR  120
            ++ LPI+P  W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVYLTTSGQAFTAQWVSPDTCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L T+GQ+F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDSGRCLqqpvaqqaaqqLRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQLGLDV  300
            D+ GRCL+Q+ A  A   L+++ +A  VSV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQLDRTQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L +TD S+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTLEPANLSAMSEKELAVYKLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+++ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQVADADLKA  479
            + C    L A GK++V+ GW+++++ +  EE  D+++RSQ+LP L+ G  C+V D +LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTQPSRPYTQGELVKSMKGVAKLISDPRLKQKLKDTVGIGTEATRANIISGLIARGYLM  539
            LKT+P+++YT+G L+K+MK +AKL+ DPRL QKLK+T GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  ITQYASASLSIKVPHGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVA  659
            + QY +++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K  +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  660  SRSR  663
              ++
Sbjct  661  KSAK  664

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/654 (66%), Positives = 553/654 (85%), Gaps = 2/654 (0%)

Query  1    MRLFLCEKPSQGKDIGKVLGATQRDNGCLKGPGVIVTWCIGHLVEAAPPEAYDANLKHWS  60
            MRL+LCEKPSQGKDI+ VLGA  R++GC+KG GV VTW IGHL+E+APP+AY+ +LK+WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPERWRIEVKPKTAAQFKVVKQLLAQATELVIATDADREGEMIAREIVELCGYR  120
            ++ LPI+P  W++ VKPKTA+QFK+VKQLL QATELVIATDADREGEMIARE++E CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALAALKPSSETLPMYHSALARSRADWLVGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K +SET P+Y SALARSRADWL+GMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREINQFVSIPFWAIDVALSATGQSFIAQWLAPEACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I++F++ PFW+++V L ++GQSF+A+W+A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEAGRCLQESVAQQAAQQLRANGTAQVASVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            DE GRCL+++ A  A   L+++ +A   SV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMQADVPAVLDSLLRTDPALRPVMEQLDRRQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM  +VP VLD+L RTDP++   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDRTIAR  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRT+A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCAGQHLQAVGKQIVIPGWRLVLVeqqaedaddeaaPRSQVLPALNQGLSCQMNTVDLK  479
            + C +  LQAVGK+IVIPGW+ VL    +E+  D+++ RSQ+LP L+ G  C+++ ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPRPYTQGELVKAMKSVAKLVSDPRLKQKLKDTVGIGTEATRANIINGLLTRGYL  539
            +LKT PP++YT+G L+KAMK++AKLV DPRL QKLK+T GIGTEATRA  I+GL+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  IKKGRAIRASEAAGTLIDTVPAAIADPGTTAVWEQALDMIEAGELTHDVFTGKQSAWISQ  599
            IKKG A+RA+EAA +LID+VP+A+ADPGTTA+WEQAL MIE G LT D F ++QS+WI++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  IIAQYQGTAMTIKVPQGPACPQCGSATRQRTGKNGPFWSCSRYPECKGTVPVDS  653
            ++ QY+GT+++IKVP+GP CP C++ T QR G +G FW+CSRYPECKGTV +++
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  758 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/666 (63%), Positives = 557/666 (84%), Gaps = 2/666 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQNWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSASGQSFTAQWVPPDAYT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L ++GQSF A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDTGRCLQQPVaqraaqqirgagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVSTVLDSLLRTDPSLRPIMDQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EV+ VLD+L RTDPS+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LACGQQKLAATGKQVVVKGWPLVLTEPQPDEDGDAAARSQVLPALREGLACLVADVDLKA  479
            + C    L A GK++V+ GW ++++ +  +E +D+++RSQ+LP L+ G  C V D++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPRPYTQGELVKSMKGVAKLVTDPRLKQKFRDTVGIGTEATRANIISGLIARGYIV  539
            LKT PP++YT+G L+K+MK +AKLV DPRL QK+++T GIGTEATRA  I GLI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYSIASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRGA  659
            + QY  ++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K+++
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK-KKSP  659

Query  660  SRPHRS  665
            +++ ++
Sbjct  660  GKSAKP  665

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  758 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/666 (63%), Positives = 557/666 (84%), Gaps = 2/666 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQNWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSASGQSFTAQWVPPDAYT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L ++GQSF A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDTGRCLQQPVaqraaqqirgagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVSTVLDSLLRTDPSLRPIMDQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EV+ VLD+L RTDPS+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDRTVAN  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LACGQQKLAATGKQVVVKGWPLVLTEPQPDEDGDAAARSQVLPALREGLACLVADVDLKA  479
            + C    L A GK++V+ GW ++++ +  +E +D+++RSQ+LP L+ G  C V D++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPRPYTQGELVKSMKGVAKLVTDPRLKQKFRDTVGIGTEATRANIISGLIARGYIV  539
            LKT PP++YT+G L+K+MK +AKLV DPRL QK+++T GIGTEATRA  I GLI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYSIASLSIKVPQGPACPQCGAPTRQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRGA  659
            + QY  ++LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G  K+++
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK-KKSP  659

Query  660  SRPHRS  665
            +++ ++
Sbjct  660  GKSAKP  665

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  757 bits (2865),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/664 (63%), Positives = 555/664 (84%), Gaps = 1/664 (0%)

Query  1    MCEKPSQGKDIGRVLGATQRGNGCLAGSGITVTWCIGHLVEAAPPETYGEQYKRWSIEQL  60
            +CEKPSQGKDI+ VLGA  RG+GC+ G+G++VTW IGHL+E+APP++YGE+ K WS++ L
Sbjct  5    LCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWSLDTL  64

Query  61   PIIPERWRVEVKSKTASQFNVVKNLLSKATELVIATDADREGELIAREIIELCGYHGPIQ  120
            PI+P  W+V VK+KTASQF++VK+LL +ATELVIATDADREGE+IARE+IE CGY+GPIQ
Sbjct  65   PILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGPIQ  124

Query  121  RLWLSALNDASIRKALAALRPSGETLPMYFSALARSRADWLIGMNLSRLFTVMGRQAGYD  180
            RLWLSALN+ASIR+AL +++ ++ET P+Y+SALARSRADWLIGMN+SRLFT++GRQAGY 
Sbjct  125  RLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQAGYT  184

Query  181  GVLSVGRVQTPTLKLVVDRDREIARFVSVPFWTVETVLSSAGQSFTAGWLAPDTATDDAG  240
            GVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW+VE  L +AGQSF A W+A +   D+ G
Sbjct  185  GVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEEG  244

Query  241  RCLQEPIARQAAERMRIAGSAQVTSVETERLREGPPLPFDLGTLQEICSKQLGLDVQETL  300
            RCL+++ A  A   ++ + +A   SV+T R ++ +PLPFDL+TLQE+CS ++G++VQETL
Sbjct  245  RCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQETL  304

Query  301  EIAQALYETHKATTYPRSDSGYLPESMFAEVPVVLDSLLKTDPGLRPIVDQLDRNQRSRA  360
            ++AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L +TDP++   ++ +D +QRSRA
Sbjct  305  DVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQRSRA  364

Query  361  WNDSKVTA-HHGIIPTLEPANLTAMSDKEQAVYKLIRAHYLAQFLPQHEFDRTTACLSCT  419
            WND K+T+ HHGIIPTLEPANL+AMS+KE+ VY LIRAH+LAQFLP HE+DRT A + C 
Sbjct  365  WNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVATFECN  424

Query  420  GETLQAVGKQIVVIGWRQVLTEPRPDEDGETTLRSQVLPALHEGLSCQITGIDCKALKTS  479
            +  LQAVGK+IV+ GW+ +++ +  +E +++  RSQ+LP L+ G  C++ +++ K+LKT 
Sbjct  425  AVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKSLKTE  484

Query  480  PPRPYTQGELVKAMKGVAKLVSDPRLKQKLKDTTGIGTEATRANIIKGLLDRGYLLKKSR  539
            PP++YT+G L+KAMK +AKLV DPRL QKLK+TTGIGTEATRA  I+GL+DRG L+KK+ 
Sbjct  485  PPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLIKKGS  544

Query  540  SVRASDAAFTLIDAVPGAIADPGMTAIWEQALDMIEAGQLTLDVFIDKQSAWITQLVQQY  599
            ++RA++AAF+LIDAVP A+ADPG TAIWEQAL MIE G LTLD FI +QS+WIT+LV+QY
Sbjct  545  ALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRLVEQY  604

Query  600  RGASLSIKVPQGPACPECGTAMRQRTGKSGPFWSCPRYPDCKGSQPIDSGKHKRAMPRKR  659
            +G++LSIKVP+GP CP C++   QR G SG FW+C+RYP+CKG+  I++GK K +    +
Sbjct  605  KGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPGKSAK  664

Query  660  SRSS  663
            +R++
Sbjct  665  PRAA  668

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  755 bits (2855),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/673 (63%), Positives = 552/673 (83%), Gaps = 3/673 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVIVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC+ G+GV VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSAQARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SA ARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSVPFWAIDVSLSAGGQAFSAQWVPPDGCI  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L ++GQ+F A+WV+ +  +
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqaaqqiraagsaqVVSVETKRVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+TKR ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRPIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSVMSEKELAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+T+ HHGIIPTLEPANLS MSEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQKLAATGKQVVAQGWRLVLAEPQADEDGDDAARSQVLPALREGMACQVAEAEIKA  479
            + C    L A GK++V  GW+++++ +  +E +D ++RSQ+LP L+ G  C+V + ++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPPKPYTQGELVKSMKGVAKLVTDPRLKQKLKETVGIGTEATRANIISGLIARGYLV  539
            LKT PPK+YT+G L+K+MK +AKLV DPRL QKLKET GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPTAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSTSLSIKVPQGPACPQCGATTRQRTGKTGPFWSCSRYPDCKGTLPVDSGTSKRG-  658
            + QY +T+LSIKVP+GP CP C+A T QR G +G FW+CSRYP+CKGT+ +++G  K   
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  659  -ASRPRTSGRKGS  670
             +++PR++  K+S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  752 bits (2845),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/654 (65%), Positives = 550/654 (85%), Gaps = 2/654 (0%)

Query  1    MRLFLCEKPSQGKDIGRLLGARQRGNGCLNGPGVVVTWCIGHLVEAAPPEAYDEQLKRWT  60
            MRL+LCEKPSQGKDI+ +LGA+ RG+GC++G GV VTW IGHL+E+APP+AY+E+LK W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQHWRVEVKPKTAAQFKVVKDLLSKATELVIATDADREGELIAREIIDLCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK+LL +ATELVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIHAALGKLKPSGDTLPMYHSALARSRADWLVGMNLSRLFTLLGRR  180
            GPIQRLWLSALN+ASI+ AL  +K +++T P+Y SALARSRADWL+GMN+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLRLVVDRDREIAAFVSVPFWSIEVALSCTGQTFTAQWLPPSAST  240
            AGY GVLSVGRVQTPTLRLVVDRDR+I+ F++ PFWS+EV L  +GQ+F A+W++     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQEPvaqqavqriraagaaqMVSVETERMREGAPLPFDLGTLQEVCSKQFGLDV  300
            D+ GRCL+++ A  A+  ++++ AA  VSV+T R ++ APLPFDL+TLQEVCS +FG++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQSLYETHKATTYPRSDSGYLPESMHAEAPTVLDSLLKTDPSLRPIIDQLDRTQ  360
            QETL++AQSLYETHKATTYPR+D GYLPESM  E P VLD+L +TDPS+   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  HSRAWNDAKVSA-HHGIIPTLEPANLSAMSEKELAAYRLIRAHYLAQFLPPHEFDRTTAR  419
            +SRAWND K+++ HHGIIPTLEPANLSAMSEKE   Y LIRAH+LAQFLP HE+DRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGDQTLQAVGKHVVVPGWRLVLaepqpddagddaapRSQVLPALHQGLACQVAGVDLK  479
            F C    LQAVGK++V+PGW+ VL  + +++ +DD++ RSQ+LP L+ G  C+V +++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPRPYTQGELVKAMKSVAKLVSDPRLKQKLKDSVGIGTEATRANIIGGLLNRGYL  539
            +LKT PP++YT+G L+KAMK++AKLV DPRL QKLK++ GIGTEATRA  I GL++RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  IKKGRAIRASDAAFTLIDTVPAAIADPGTTAVWEQALDMIETGQLALDTFIDKQAAWVTQ  599
            IKKG A+RA++AAF+LID+VP+A+ADPGTTA+WEQAL MIE G L+LD FI +Q++W+T+
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LIAQYRGTSLSIKIPEGPACPQCGGATRQRSGKSGPFWSCAKYPDCKGTLPIES  653
            L+ QY+GT+LSIK+PEGP CP C++ T QR G SG FW+C++YP+CKGT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 415/677 (62%), Positives = 560/677 (83%), Gaps = 5/677 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALAKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSAGGQTFTAQWVAPDASA  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L ++GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpiaqqaaqqiraagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPTLAPIMGQLDRTQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDP+++  +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLSAMSEKEQAVYRLIRAHYLAQFLPHHEFDRTVAD  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE+ VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQKLVATGKQVVVKGWRLVLAEPEREGSADEDGDAPRSQVLPALRDGMACQVAGAD  479
            + C    L A GK++V+ GW+++++ +  E + D +G   RSQ+LP L+ G  C+V + +
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG---RSQILPVLQIGTRCDVQDLH  477

Query  480  IKALKTMPPKPYTQGELVKAMKGVARFVTDPRLKQKLKDTTGIGTEATRANIISGLIARG  539
            +K+LKT PPK+YT+G L+KAMK +A++V DPRL QKLK+TTGIGTEATRA  I GLI RG
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  YIVKKGRSIRASDAALTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWI  599
             ++KKG ++RA++AA++LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  SQLIAQYGSTSLSIKVPQGPACPQCGAPTRQRTGKSGPFWSCSRYPACKGTLPVATGTSR  659
            ++L+ QY +T+LSIKVP+GP CP C+A T QR G SG FW+CSRYP CKGT+ ++TG  +
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK-K  656

Query  660  RGASRPRRTSGGGCKGA  676
            ++++++ +  ++  K++
Sbjct  657  KSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  751 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 413/673 (62%), Positives = 554/673 (83%), Gaps = 3/673 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPQTATQFKVVKTLLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKP+TA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIARLWLSALNDASIRTALAKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSAGGQTFTAQWVAPDAST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L ++GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqaaqqiraagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPTLAPIMGQLDRAQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDP+++  +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLSAMSEKEQAVYRLIRAHYLAQFLPHHEFDRTIAE  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE+ VY LIRAH+LAQFLP HE+DRT+A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQKLVATGKQVAAQGWHLVLAEPQADEDGETIARSQVLPALREGLACQVAEAEVKA  479
            + C    L A GK++   GW ++++ +  +E +++ +RSQ+LP L+ G  C+V + ++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPKPYTQGELVKSMKGVARFVTDPRLKQKLKDTTGIGTEATRANIITGLLTRGYLV  539
            LKT PPK+YT+G L+K+MK +A++V DPRL QKLK+TTGIGTEATRA  I GL+ RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAALTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG ++RA++AA++LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSTSLSIKVPQGPACPQCGAPTRQRTGKSGPFWSCSRYPDCKGTLPVETGTSKRG-  658
            + QY +T+LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + TG  K   
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  659  -ASRPRKSGRKGS  670
             +++PR +  K+S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  751 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 412/673 (62%), Positives = 554/673 (83%), Gaps = 3/673 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPQTATQFKVVKTLLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKP+TA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIARLWLSALNDASIRTALAKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSAGGQTFTAQWVAPDAST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+++V L ++GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqaaqqiraagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPTLAPIMGQLDRAQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDP+++  +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTLEPANLSAMSEKEQAVYRLIRAHYLAQFLPHHEFDRTIAE  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE+ VY LIRAH+LAQFLP HE+DRT+A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQKLVATGKQVAAQGWHLVLAEPQADEDGETTARSQVLPALREGLACQVAEAEVKA  479
            + C    L A GK++   GW ++++ +  +E +++ +RSQ+LP L+ G  C+V + ++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPKPYTQGELVKSMKGVARFVTDPRLKQKLKDTTGIGTEATRANIITGLLTRGYLV  539
            LKT PPK+YT+G L+K+MK +A++V DPRL QKLK+TTGIGTEATRA  I GL+ RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAALTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG ++RA++AA++LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IVQYGSTSLSIKVPQGPACPQCGAPTRQRTGKTGPFWSCSRYPDCKGTLPVETGTSKRG-  658
            + QY +T+LSIKVP+GP CP C+A T QR G +G FW+CSRYP+CKGT+ + TG  K   
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  659  -ASRPRKSGRKGS  670
             +++PR +  K+S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  750 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 413/674 (62%), Positives = 560/674 (84%), Gaps = 2/674 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPQTATQFKVVKTLLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKP+TA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALAKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFESVPYWAIDVSLSAGGQTFTAQWVAPDAST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + P+W+++V L ++GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqaaqqiraagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRPIMEQLDRSV  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   ++ +D   
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDTKVSA-HHGIIPTLEPANLSAMSEKEQAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+++ HHGIIPTLEPANLSAMSEKE+ VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LFCGQQKLVATGKQVVAKGWRLVLAEPQADEDGDGAARSQVLPALRDGMACQIAGADIKA  479
            + C    L A GK++V  GW+++++ +  +E +D+++RSQ+LP L+ G  C++ + ++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPPKPYTQGELVKAMKGVARFVTDPRLKQKLKDTTGIGTEATRANIISGLIARGYIV  539
            LKT PPK+YT+G L+KAMK +A++V DPRL QKLK+TTGIGTEATRA  I GLI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEGGQLTLDVFIGKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSTSLSIKVPQGPACPQCGAPTRQRTGKSGPFWSCSRYPDCKGTLPVATGTSRRGA  659
            + QY +T+LSIKVP+GP CP C+A T QR G SG FW+CSRYP+CKGT+ ++TG  ++++
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK-KKSP  659

Query  660  SRPRRTSGGGRKGS  673
            +++ +  ++  K+S
Sbjct  660  GKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  748 bits (2829),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/666 (63%), Positives = 551/666 (83%), Gaps = 5/666 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGASVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G +V VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIVPERWRVEPKAATVAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPI+P  W+V  K+ T +QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETMPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYNGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWATEVALSHAGQTFVASWTPPQGST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW+ EV L  AGQ+F+A W + +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEAGRCLRQPVAQQAAERLRAAGTAQVLSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            DE GRCL Q+ A  A   L+++ +A  +SV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGHLPESMLAEVPAVLDSLVKTDPSLRPLIDRLDRQQ  360
            QETLD+AQ+LYETHKATTYPR+D G LPESM+ EVP VLD+L +TDPS+   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMTEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+T+ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LTCGGQSLVAVGKQIATAGWRQVLAAPALDDTDGEDARRGQVLPALKAGDACQVSQVELK  479
            + C +  L AVGK+I  +GW+ +++A++ +++D+ ++ R+Q+LP L+ G  C+V +++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG-RSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELVKAMKGVAKLVTDPRLKQKLKDTTGIGTEATRANIISGLLARGYL  539
            +LKT PPK+YT+G L+KAMK +AKLV DPRL QKLK+TTGIGTEATRA  I GL+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  LKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEHALDMIEAGQMALDTFIAKQSSWVAR  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WE+AL MIE G ++LD FIA+QSSW++R
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLDLKLPPAPDCPQCGAPMRQRSSKSGVFWSCSRYPDCKGTQPVEDAAAGKR  659
            LV+QY+G+TL +K+P +P CP C+A   QR + SGVFW+CSRYP+CKGT  +   ++GK+
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI---GTGKK  656

Query  660  GASSRT  665
             +++++
Sbjct  657  KSPGKS  662

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  748 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/654 (63%), Positives = 542/654 (83%), Gaps = 1/654 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC+ G+GV++TW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SALARSRADWL+GMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQAFSAQWVAPDGCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L T GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++ ++ +  VSV+T R ++ +PL FDLSTLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSPLSEKELAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+T+ HHGIIPTLEPANLS++SEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQVAEVEIKA  479
            F C   +L A GK++V+ GW+++++ +  +E +D ++RSQ+LP L+ G  C+V ++++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPPKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIV  539
            LKT PPK+YT+G L+K+MK IA++V DPRL QKLK+TTGIGTEATRA  I  LI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD F+++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSMSLSIKLPHGPACPQCGAATRQRTGKSGPFWSCSRYPDCKGTLPVESG  653
            + QY + +LSIK+P+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  748 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/654 (63%), Positives = 542/654 (83%), Gaps = 1/654 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC+ G+GV++TW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SALARSRADWL+GMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQAFSAQWVAPDGCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L T GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++ ++ +  VSV+T R ++ +PL FDLSTLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSPLSEKELAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+T+ HHGIIPTLEPANLS++SEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQVAEVEIKA  479
            F C   +L A GK++V+ GW+++++ +  +E +D ++RSQ+LP L+ G  C+V ++++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPPKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIV  539
            LKT PPK+YT+G L+K+MK IA++V DPRL QKLK+TTGIGTEATRA  I  LI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD F+++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSMSLSIKLPHGPACPQCGAATRQRTGKSGPFWSCSRYPDCKGTLPVESG  653
            + QY + +LSIK+P+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  748 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/654 (63%), Positives = 542/654 (83%), Gaps = 1/654 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC+ G+GV++TW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SALARSRADWL+GMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQAFSAQWVAPDGCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L T GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++ ++ +  VSV+T R ++ +PL FDLSTLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSPLSEKELAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+T+ HHGIIPTLEPANLS++SEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQVAEVEIKA  479
            F C   +L A GK++V+ GW+++++ +  +E +D ++RSQ+LP L+ G  C+V ++++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPPKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIV  539
            LKT PPK+YT+G L+K+MK IA++V DPRL QKLK+TTGIGTEATRA  I  LI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD F+++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGSMSLSIKLPHGPACPQCGAATRQRTGKSGPFWSCSRYPDCKGTLPVESG  653
            + QY + +LSIK+P+GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTG  654

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  747 bits (2825),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/669 (65%), Positives = 560/669 (84%), Gaps = 1/669 (0%)

Query  1    MRVVLCEKPSQGKDIARVLGATQRGNGCYTGSGLGVTWGIGHLIETAPPEAYGEQYKRWA  60
            MR+ LCEKPSQGKDIA VLGA  RG+GC  G+G++VTWGIGHL+ETAPP+AYGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEPLPIIPQHWQVVVKAKTATQFKVVKQLLAQATDLVIATDADREGEMIARELIDYCGYR  120
            L+ LPI+P +W+V+VK+KTA+QFK+VKQLL QAT+LVIATDADREGEMIARELI+YCGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSGETLPLYYSALARSRADWLIGMNLSRLFTVLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY SALARSRADWLIGMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYSGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWTIEVLLAHAGQSFVANWTPPAGCT  240
            AGY+GVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW++EV L  AGQSF+A+W +     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQQPVAQQADERMRAAVSAQVVSVETERMREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKATTYPRSDSGYLPENMLAEVPTVLDSLVKTDPSLRPLVAKLDPHQ  360
            QETLD+AQSLYETHKATTYPR+D GYLPE+M+ EVP VLD+L +TDPS+   +  +DP+Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVTA-HHGIIPTLEPANLSALNDKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+T+ HHGIIPTLEPANLSA+++KE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FACAGQSLTVVGKQIVVTGWRQVLaapapdepdedaQRSQVLPALHAGLSCPIGAVDLKA  479
            F C +  L  VGK+IV+ GW+ +++A++ +E+D+ + RSQ+LP L+ G  C +  ++LK+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPKPYTQGELVKAMKGVARLVTDPRLKQKLKDTTGIGTEATRANIINgllgrgyll  539
            LKT PPK+YT+G L+KAMK +A+LV DPRL QKLK+TTGIGTEATRA  I+GL++RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  kkgrAIRASDAAFTLIDAVPPAIADPGTTAVWEQALDMIEARQMTLDAFIAKQSAWVAQL  599
            KKG A+RA++AAF+LIDAVPPA+ADPGTTA+WEQAL MIE   +TLD FIA+QS+W+++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VQQYRTATLSIQLPPAPACPQCGSPMRQRTGKSGAFWSCSRYPDCKGTMAIESATGGKRS  659
            V+QY+ +TLSI++P +P CP C++   QR G SG FW+CSRYP+CKGT+ I ++     +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  660  APRKRRTAP  668
             + K R+A 
Sbjct  661  KSAKPRAAT  669

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  743 bits (2813),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/654 (65%), Positives = 538/654 (83%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGYYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+G   G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYH  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGY+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYYSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAVDVLLSHAGRSFTASWIPPEGST  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+V+V L  AG+SF A W++ E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPVAQQAADCIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSKQLGLDV  300
            D  GRCL+Q+ A  A   +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAKVPAVLDALLATDPSLRPLIGQLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+  VP VLDAL  TDPS+   +  +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+T+ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVTGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMALDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G ++LD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLPPTPACPQCGAPMQQRTGKSGAFWSCSRYPDCKGTLPIES  653
            LV+QY+G+TLS+K+P  P CP C+A   QR G SG FW+CSRYP+CKGT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  743 bits (2812),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 413/654 (64%), Positives = 542/654 (83%), Gaps = 4/654 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAATPEAYDEQLKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV+VTW IGHL+E+A P+AY+E+LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYR  120
            ++ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRAALGKLRPSAETLPMYHSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIVVSLSAGVQAFTAHWVPPNACT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++ Q+F A WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqamqqIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A+  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVTTVLDSLLKTDPSLRSIIGQLDRLQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EV  VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDHTVAK  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+D+TVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGGQNLAATGKQVVTPGWRQVLAEPQSEdgdgdgdTAARAQVLPALHEGLACQVADID  479
            + C +  L A GK++V PGW+ +++ +  E     +D+++R+Q+LP L+ G  C+V D++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEE---EADDSGGRSQILPVLQIGTRCDVQDLH  477

Query  480  LKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLIARG  539
            LK+LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI RG
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  YLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWI  599
             L+KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  SQLIAQYGNASLSIKAPQGPTCPQCGAPTRQRSSKSGPFWSCSRYPDCKGTLPV  653
            ++L+ QY  ++LSIK P+GP CP C+A T QR + SG FW+CSRYP+CKGT+ +
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  743 bits (2810),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/658 (64%), Positives = 547/658 (84%), Gaps = 3/658 (0%)

Query  1    MRLFLCEKPSQGRDIAKVLGATRRGDGCLIGTDSTVTWCIGHLLETAPPEAYGAQYKSWS  60
            MRL+LCEKPSQG+DIA VLGA  RGDGC+ G + +VTW IGHLLETAPP+AYG + K+WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDHLPIIPAQWQVEVKSKTAAQFKIIKRLLSEASSVVIATDADREGEMIARELLELCRYR  120
            LD LPI+PA+W+V VK+KTA+QFKI+K+LL +A+ +VIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVLRLWLSALNEASIRKALSSLKSGQVTFPLYHSALARSRADWLIGMNLSRLFTLLGRR  180
            GP+ RLWLSALNEASIR+AL+++K G  T+PLY SALARSRADWLIGMN+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLRLVVDRDRAIASFVPVPYWTVDVHLSSMGQRFIASWLPPRSGR  240
            AGY GVLSVGRVQTPTLRLVVDRDR I++F+P P+W+V+V+L + GQ F+A W++     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEAGRCLQQALAHHAVQTITGEKSATVLSLQTEQLREPPPLPFDLSTLQEVCSRKLGLGV  300
            DE GRCL+QA A  A+ ++ + ++A+ +S++T + ++P+PLPFDLSTLQEVCS K+G+GV
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLNIAQALYETHKATTYPRSDCRYLPESMFNEAPAVLDALLKTDPALRPAFGSLDRSL  360
            QETL++AQ+LYETHKATTYPR+DC YLPESMF+E P VLDAL +TDP++  ++  +D   
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RARVWNNAKVTA-HHGIIPTTEPANLVRMSEQERQVYELIRSHYLAQFLPHHEFDRTQVE  419
            R+R WN+ K+T+ HHGIIPT EPANL  MSE+ER+VYELIR+H+LAQFLP HE+DRT   
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LECSKERLTAVGKQILIQGWKGLLTENTED--DEPSQKHQVLPVLQQGTQCAVNDVELKS  477
            +EC+   L AVGK+I+I GWK L++ ++E+  D+++ + Q+LPVLQ GT+C V+D++LKS
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  478  MRTVAPKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLVDRGYLL  537
            ++T +PK+ TEG LIKAMK +AKLV+DPRL QKL++TTGIGTEATRAG I+GL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  538  KKKRALMASAAAHTLIEAAPTAVADPGMTAIWEQALDEIEAGRLTLDAFVAKQANWIAQL  597
            KK  AL A+ AA +LI+A P AVADPG TAIWEQAL  IE G LTLD F+A+Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  598  VAHYRSHTLAIAVETSPSCPMCNASMLRRKGKSGPFWSCSCYPDCKGTVSISKDTRRS  655
            V +Y++ TL+I V  +P CP+C+A   +RKG SG FW+CS YP+CKGTV+I+ + ++S
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKS  658

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  742 bits (2806),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/654 (65%), Positives = 543/654 (84%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYSGVLSVGRVQTPTLKLVVDRDREIARFVCVPFWAIEVALSHAGQPFVASWTPPQGST  240
            AGY+GVLSVGRVQTPTL+LVVDRDR+I+ F+  PFW++EV L  AGQ+F+A W + +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQQPvaqqaadriraardaqvvSVDTERVREAPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPAVLDALLATDPSLRPLIGQLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLDAL  TDPS+   +  +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVSA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+++ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVTGWREVLATPGPDDADGEDALRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ ++++++ ++AD+ ++ RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG-RSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALRTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +L+T PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMALDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G ++LD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLPPTPACPQCGAPMQQRTGKSGAFWSCSRYPDCRGTLPIES  653
            LV+QY+G+TLS+K+P  P CP C+A   QR G SG FW+CSRYP+C+GT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  742 bits (2808),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/673 (62%), Positives = 553/673 (83%), Gaps = 3/673 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTVTWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC+ G+GV+VTW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIVPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTVLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSVPFWAIDVSLSAGGQAFSAQWVPPDGCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L ++GQ+F A+WV+ +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpiaqqaaqqiraassaqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRPIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP VLD+L +TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMSEKELAVYWLIRAHYLAQFLPHHEFDRTIAE  419
            RSRAWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+DRT+A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LSCGQQKLVATGKQVAAQGWHLVLAEPQADEDGETTARSQVLPALREGLACQVAEAEVKA  479
            + C    L A GK++   GW ++++ +  +E +++ +RSQ+LP L+ G  C+V + ++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTLPPKPYTQGELVKSMKGVARFVTDPRLKQKLKDTTGIGTEATRANIITGLLTRGYLV  539
            LKT PPK+YT+G L+K+MK +A++V DPRL QKLK+TTGIGTEATRA  I GL+ RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IVQYGSTSLSIKVPQGPACPQCGAPTRQRTGKTGPFWSCSRYPDCKGTLPVDSGTSKRG-  658
            + QY +T+LSIKVP+GP CP C+A T QR G +G FW+CSRYP+CKGT+ +++G  K   
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPG  660

Query  659  -ASRPRSSGRKGS  670
             +++PR++  K+S
Sbjct  661  KSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  737 bits (2789),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/655 (63%), Positives = 540/655 (83%), Gaps = 1/655 (0%)

Query  1    MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTITWCIGHLVEAAAPEVYDAALKRWS  60
            MRL+LCEKPSQGKDI+ +LGA  RG+GC++G+GV++TW IGHL+E+A+P+ Y+  LK WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYR  120
            L+ LPI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLGRQ  180
            GPI+RLWLSALN+ASIR AL  ++ +S+T P+Y SALARSRADWL+GMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSVPFWAIDVSLSAEGQAFAAQWVAPDDCT  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F + PFW+++V L + GQ+F A+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLqqpvaqqaaqqiraagsaqVVSVGTERVREGPPLLFDLSTLQEVCSRQVGLDV  300
            D+ GRCL+Q+ A  A   ++++ +A  VSV+T R ++ +PL FDLSTLQEVCS + G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLNTDPSLRPIMGQLDRSQ  360
            QETL++AQ+LYETHKATTYPR+D GYLPESMF EVP+VLD+L  TDPS+   +  +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSALSEKELAVYRLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAWND K+T+ HHGIIPTLEPANLSA+SEKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGQQTLVATGKQVVVKGWRLVLAEPQADEDGDDTARSQVLPPLREGLACQVAEVEIKA  479
            F C    L A GK++V+ GW+++++ +  +E +D  +RSQ+LP L+ G  C+V ++++K+
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTMPAKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIV  539
            LKT P+K+YT+G L+K+MK IA++V DPRL QKLK+TTGIGTEATRA  I  LI RG ++
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQL  599
            KKG ++RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD F+++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IAQYGCVSLSIKLSHGPACPQCGAATRQRTGKSGPFWSCSRYPDCKGTLPVESGT  654
            + QY   +LSIK+++GP CP C+A T QR G SG FW+CSRYP+CKGT+ + +G 
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK  655

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  735 bits (2779),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/678 (62%), Positives = 545/678 (81%), Gaps = 11/678 (1%)

Query  1    MRVVLCEKPSQGKDIARVLGAHRREAGCLGGPGITVTWGSGHLIEAAPPEAYGEHFQRWT  60
            MR+ LCEKPSQGKDIA VLGA  R  GC+ G G++VTWG GHL+E+APP+AYGEH++ W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LETLPIVPPRWQWVVKARSAAQFKVVKRLLGEASELIIATDADREGEMIAREMIDYCGYR  120
            L+TLPI+P+ W+ +VK+++A+QFK+VK+LL +A+EL+IATDADREGEMIARE+I+YCGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALNDASIRKAFGALRASSETLSLYHCALARSRADWLVGINLTRLFTLLGRH  180
            GP+QRLWLSALN+ASIR+A+ +++ +SET +LY  ALARSRADWL+G+N++RLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGHDGVLSVGRVQTPTLKLVVDRDREIAAFVPVPFWSIDVSLSAANVPFSAHWLAPRTAT  240
            AG  GVLSVGRVQTPTL+LVVDRDR+I+ F+P PFWS++V L +A  +F A W+A     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLRQSVarhaadairaagtaQVVHTETERVREGPPLPFDLSTLQEVCSRRLGLEV  300
            D+ GRCL Q+ A  A  A++++ +A  V  +T R ++ +PLPFDLSTLQEVCS ++G+ V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRTDAGYLPENMLAEVPTVIQSLVKTDPALQPLIDRLDFRQ  360
            QETLD+AQ+LYETHKATTYPRTD GYLPE+M+ EVP V+++L +TDP++   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKITA-HHAIIPTLEPADISAMSAKELAVYRLIRAHYLAQFLPHHEFDRTVVR  419
            RSRAWND KIT+ HH+IIPTLEPA++SAMS KE  VY LIRAH+LAQFLP HE+DRTV  
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FRCGGETLQAVGKRIAVPGWQHAFSAPSLPHVAADGADTEGSDEAPREQMLPVLQEGISC  479
            F C +  LQAVGKRI +PGW+  FSA+S         + E+ D + R Q+LPVLQ G  C
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASS---------EEEADDSGGRSQILPVLQIGTRC  471

Query  480  QVSALDLKSLSTKPPRPYTQGELVKAMKTVARLVTDPRLKQKLKDTTGIGTEATRANIIS  539
            +V  L+LKSL T PP++YT+G L+KAMKT+A+LV DPRL QKLK+TTGIGTEATRA  I 
Sbjct  472  DVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQ  531

Query  540  GLLSRGFLIRKGRAVRASDTAMMLIDAVPAAIADPGTTAIWEQALDMIEARQMGLESFVE  599
            GL+ RG LI+KG A+RA+++A  LIDAVP+A+ADPGTTAIWEQAL MIE   + L+ F+ 
Sbjct  532  GLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIA  591

Query  600  KQAAWVTQLVRQHLGTTLAIRSPEGPPCPLCGAATRQRTGRSGPFWSCSRYPDCKGTAPV  659
            +Q++W+T+LV Q  GTTL+I+ PEGP CPLC+A T QR G SG FW+CSRYP+CKGT  +
Sbjct  592  RQSSWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

Query  660  APAQAGPDGQKRSRSRGA  677
            + ++  + G K +++R+A
Sbjct  652  GTGKKKSPG-KSAKPRAA  668

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  733 bits (2772),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/671 (64%), Positives = 552/671 (83%), Gaps = 5/671 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRRNGCYSGAGIVVTWCIGHLVEAVPPEGYDERDKRWV  60
            MR++LCEKPSQGKDIA VLGA  R +GC  G G+ VTW IGHL+E+ PP++Y+E+ K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIIPERWRVEPKAATAAQFKIVKQLVGQATELVIATDADREGEMIAREIIELCGYR  120
            ++ LPI+P  W+V  K+ TA+QFKIVKQL+ QATELVIATDADREGEMIARE+IE CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GAIQRLWLSALNDASIRKALGALKSSAETLPLYYSALARSRADWLIGMNLSRLFTLLGRQ  180
            G+IQRLWLSALN+ASIR+AL ++K ++ET PLY SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVSAPFWAVEVALSHAGQPFTASWTPPEGCT  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F++ PFW+VEV L  AGQ+F A W + E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEAGRCLQQPVAQQAAERMRATGSAQVASVETERVREGPPLPFDLGTLQELCSQQLGLDV  300
            DE GRCL+Q+ A  A   ++++ +A   SV+T R ++ +PLPFDL+TLQE+CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPTVLDSLVKTDPSLRPLIDRLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLD+L +TDPS+   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWSDAKVTA-HHGIIPTLEPANLSAMNDKELAVYKLIRAHYLAQFLPHHEFDRTVAE  419
            RSRAW+D K+T+ HHGIIPTLEPANLSAM++KE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LACGGQSLLAVGKQIAVAGWRQVLASSEEGGADSDDAQRSQVLPALRAGLSCQVGHVDLK  479
            + C +  L AVGK+I ++GW+ ++++S E  AD D + RSQ+LP L+ G  C+V +++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEAD-DSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELVKAMKGVARLVTDPRLKQKLKDTTGIGTEATRANIISGLLGRGYL  539
            +LKT PPK+YT+G L+KAMK +A+LV DPRL QKLK+TTGIGTEATRA  I GL++RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  LTKGRAVRASDAAFTLIDTVPAAIADPGTTAVWEQALDMIEAGQMTLDAFIAKQSAWVTQ  599
            + KG A+RA++AAF+LID+VP+A+ADPGTTA+WEQAL MIE G +TLD FIA+QS+W+T+
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGTTLAIKLppspspscpQCGAPMRQRTGKSGAFWSCSRYPDCKGTLPVDTSTGK  659
            LV+QY+GTTL+IK+P +P  +   C+A   QR G SG FW+CSRYP+CKGT+ ++T+  K
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPL--CSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK-K  656

Query  660  RSASRKQRASP  670
            +S+++  ++ +
Sbjct  657  KSPGKSAKPRA  667

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  732 bits (2771),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 426/664 (65%), Positives = 548/664 (83%), Gaps = 4/664 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGHRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGDQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YG++ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYH  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGY+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYMGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAVDVLLSHAGRSFTASWIPPEGST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+V+V L  AG+SF A W++ E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPVAQQAADCIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSKQLGLDV  300
            D  GRCL+Q+ A  A   +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPAVLDALLATDPSLRPLIGQLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLDAL  TDPS+   +  +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+T+ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVTGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANTINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA TI+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMALDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G ++LD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLppapacpqcgapmqqRTGKSGAFWSCSRYPDCKGTLPIESPTGRRS  659
            LV+QY+G+TLS+K+P +P CP C+A   QR G SG FW+CSRYP+CKGT+ I   TG++ 
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIG--TGKKK  657

Query  660  APRK  663
            +P K
Sbjct  658  SPGK  661

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  731 bits (2766),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/654 (65%), Positives = 542/654 (83%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSDETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K + ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVCVPFWAIEVALSHAGQSFVASWTPPQGSA  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F+  PFW++EV L  AGQSF+A W + +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDADRCLQQPVAQQAAEFLRAAGTAQVLSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ +RCL+Q+ A  A   L+++ +A  +SV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPTVLNSLVKTDPSLRPLIERLDRQQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VL++L +TDPS+   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVSA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+++ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVIGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKLVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AKLV DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMTLDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G +TLD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLppapacpqcaapmqqRTGKSGAFWSCSRYPDCKGTLPIES  653
            LV+QY+G+TLS+K+P +P CP C+A   QR G SG FW+CSRYP+CKGT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  729 bits (2757),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/654 (64%), Positives = 543/654 (84%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKSATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCSYR  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ C+YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDVSIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ SIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVCVPFWAIEVALSHAGQSFVASWTPPQGST  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F+  PFW++EV L  AGQSF+A W + +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQQPVAQQAVERLRTAGAAQVRSVETERVREGPPLPFDLGTLQEVCSKQLGLDV  300
            D+ GRCL+Q+ A  A+  L+++ AA   SV+T R ++ +PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPTVLDSMVKTDPSLRPLIERLDRQQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLD++ +TDPS+   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVSA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+++ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVIGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEHALDMIEAGQMALDTFIEKQAAWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WE+AL MIE G ++LD FI +Q++W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLppapacpqcgapmqqRTGKSGAFWSCSRYPDCKGTLPIES  653
            LV+QY+G+TLS+K+P +P CP C+A   QR G SG FW+CSRYP+CKGT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  727 bits (2750),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/659 (64%), Positives = 547/659 (84%), Gaps = 4/659 (0%)

Query  1    MRLFLCEKPSQGRDIAKVLGASRRGDGCLIGRETTVTWCIGHLLETAPPEAYGDQYKTWS  60
            MRL+LCEKPSQG+DIA VLGA  RGDGC+ G   +VTW IGHLLETAPP+AYG++ K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDHLPIIPAQWRVEVKPKTVAQFKIIKHLLSEATTVVIATDADREGEMIARELLELCNYR  120
            LD LPI+PA+W+V VKPKT +QFKI+K+LL +AT +VIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARSRADWLIGMNLSRLFTLLGRR  180
            G+++RLWLSALNEASIR+AL+++K + ET+PLY SALARSRADWLIGMN+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYGAVLSVGRVQTPTLRLVVERDRAIASFVSVPYWVVNAHLSSMGQQPFIASWIPPSSG  240
            AGY +VLSVGRVQTPTLRLVV+RDR I++F++ P+W V+ +L + G Q+F+A W++    
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKWVADEYL  239

Query  241  RDEAGRClqqalasqalqaisssKTATVVSLRTEHLREAPPLPFDLSTLQEVCSRKLGLG  300
             DE GRCL+QA A+ AL A+ SS++A+ VS+ T + ++++PLPFDLSTLQEVCS K+G+G
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQETLNIAQALYETHKATSYPRSDCRYLPESMFNEVAAVFDALLRMDPALRPALGSIDQS  360
             QETL++AQ+LYETHKAT+YPR+DC YLPESMF+EV+ V+DAL R DP++  +L  ID  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  LRSRAWNDAKVTA-HHGIIPTTEPANLGRMSEQERQVYELIRSHYLAQFLPHHEFDRTEV  419
             RSRAWND K+T+ HHGIIPT EPANL+ MSE+ER+VYELIR+H+LAQFLP HE+DRT  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  ELECSAERLTAVGKQILVQGWKGLLSDNPDD--DEPSQKSQVLPALQQGRQCAVDDVELK  477
             +EC+A  L AVGK+I++ GWK L+S ++++  D+++ +SQ+LP LQ G +C V+D++LK
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  SMRTAAPKSLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLIDRGYL  537
            S++T +PK+ TEG LIKAMK +AKLV+DPRL QKL++TTGIGTEATRAG I+GLIDRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  LKKKRALMASATAHTLIEAVPAAVADPGMTAIWEQALDEIEAGRLSLDAFVAKQAHWITQ  597
            +KK  AL A+ +A +LI+AVP+AVADPG TAIWEQAL  IE G L+LD F+A+Q+ WIT+
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LIANCGALTLSVPVEAGPVCPICNASMLRRKGKSGPFWSCSHYPDCKGTVPISKGIRRP  656
            L+ +  + TLS+ V  GP CP+C+A   +RKG SG FW+CS+YP+CKGTV I+ G +++
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKS  658

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  727 bits (2752),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/658 (64%), Positives = 542/658 (83%), Gaps = 3/658 (0%)

Query  1    MRLFLCEKPSQGRDIATVLGATRRGDGCLIGTETTVTWCIGHLLETAPPEAYGIQYKNWS  60
            MRL+LCEKPSQG+DIA+VLGA  RGDGC+ G   +VTW IGHLLETAPP+AYG + KNWS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDHLPIIPAQWKVEVKHKTAAQFKVIKRLLSEASAVVIATDADREGEMIARELLELCNYR  120
            LD LPI+PA+WKV VK KTA+QFK++K+LL +A+ +VIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVERLWLSALNEVSILKALSSLKSGQETFPLYHSALARSRADWLIGMNLSRLFTLLGRR  180
            GP++RLWLSALNE SI +AL+++K G ET+PLY SALARSRADWLIGMN+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLRLVVDRDRAIASFVSVPYWDVEVHLSFMGQSFIASWLPPSSGR  240
            AGY GVLSVGRVQTPTLRLVVDRDR I++F++ P+W VEV+L   GQSF+A W++     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEACRCLQQALARHAGQTITDGKTATVLSLQTEHFREPPPLPFDLSTLQEVCSRKLGLGV  300
            DE  RCL+QA A  A  ++  +++A+ +S++T + ++P+PLPFDLSTLQEVCS K+G+GV
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLNIAQALYETHKATTYPRSDCRYLPASMFDEVPTVFDALLKTDSALQPAFEKLDRSL  360
            QETL++AQ+LYETHKATTYPR+DC YLP SMFDEVP V+DAL +TD+++  +++ +D   
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKATA-HHGIIPTTEPANLARMSEQERQVYEQIRNHYLAQFLPHHEFDRTQVE  419
            RSRAWND K T+ HHGIIPT EPANL+ MSE+ER+VYE IR H+LAQFLP HE+DRT   
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LECGKERLTAVGKQILVQSWKGLLYDNTED--DEPSQKFQVLPVLQQGTQCAVNDVELKS  477
            +EC    L AVGK+I++ +WK L+  ++E+  D+++ + Q+LPVLQ GT+C V+D++LKS
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  478  MRTTAPKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLIDRGYLL  537
            ++T +PK+ TEG LIKAMK +AKLV+DPRL QKL++TTGIGTEATRAG I+GLIDRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  538  KKKRALMASAAAHTLIEAVPAAIADPGMTAIWEQALDEIEAGRLSLDAFVAKQASWIAQL  597
            KK  AL A+ AA +LI+AVP+A+ADPG TAIWEQAL  IE G L+LD F+A+Q+SWI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  598  VEHCRALTLALPVETGPACPICNASMLRRTGKSGAFWSCSHYPDCKGTVPISKDIRRP  655
            VE+ ++ TL++ V  GP CP+C+A   +R G SG FW+CS+YP+CKGTV I+ + +++
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKS  658

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  726 bits (2746),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 415/678 (62%), Positives = 542/678 (80%), Gaps = 14/678 (2%)

Query  1    MRVVLCEKPSQGKDIARVLGAHRREAGCLGGPGITVTWGSGHLIEAAPPEAYGEHFQRW-  59
            MR+ LCEKPSQGKDIA VLGA  R  GC+ G G++VTWG GHL+E+APP+AYGEH++ W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   --TLPIVPPRWQWVVKARSAAQFKVVKRLLGEASELIIATDADREGEMIAREMIDYCGYR  117
              TLPI+P+ W+ +VK+++A+QFK+VK+LL +A+EL+IATDADREGEMIARE+I+YCGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  118  GPVQRLWLSALNDASIRKAFGALRASSETLSLYHCALARSRADWLVGINLTRLFTLLGRH  177
            GP+QRLWLSALN+ASIR+A+ +++ +SET +LY  ALARSRADWL+G+N++RLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  178  AGHDGVLSVGRVQTPTLKLVVDRDREIAAFVPVPFWSIDVSLSAANVPFSAHWLAPRTAT  237
            AG  GVLSVGRVQTPTL+LVVDRDR+I+ F+P PFWS++V L +A  +F A W+A     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  238  DDAGRCLRQSVarhaadairaagtaQVVHTETERVREGPPLPFDLSTLQEVCSRRLGLEV  297
            D+ GRCL Q+ A  A  A++++ +A  V  +T R ++ +PLPFDLSTLQEVCS ++G+ V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  298  QETLDIAQALYETHKATTYPRTDAGYLPENMLAEVPTVIQSLVKTDPALQPLIDRLDFRQ  357
            QETLD+AQ+LYETHKATTYPRTD GYLPE+M+ EVP V+++L +TDP++   ++ +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  358  RSRAWNDAKITA-HHAIIPTLEPADISAMSAKELAVYRLIRAHYLAQFLPHHEFDRTVVR  416
            RSRAWND KIT+ HH+IIPTLEPA++SAMS KE  VY LIRAH+LAQFLP HE+DRTV  
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  417  FRCGGETLQAVGKRIAVPGWQHAFSAPSLPHVAADGADTEGSDEAPREQMLPVLQEGISC  476
            F C +  LQAVGKRI +PGW+  FSA+S         + E+ D + R Q+LPVLQ G  C
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASS---------EEEADDSGGRSQILPVLQIGTRC  471

Query  477  QVSALDLKSLSTKPPRPYTQGELVKAMKTVARLVTDPRLKQKLKDTTGIGTEATRANIIS  536
            +V  L+LKSL T PP++YT+G L+KAMKT+A+LV DPRL QKLK+TTGIGTEATRA  I 
Sbjct  472  DVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQ  531

Query  537  GLLSRGFLIRKGRAVRASDTAMMLIDAVPAAIADPGTTAIWEQALDMIEARQMGLESFVE  596
            GL+ RG LI+KG A+RA+++A  LIDAVP+A+ADPGTTAIWEQAL MIE   + L+ F+ 
Sbjct  532  GLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIA  591

Query  597  KQAAWVTQLVRQHLGTTLAIRSPEGPPCPLCGAATRQRTGRSGPFWSCSRYPDCKGTAPV  656
            +Q++W+T+LV Q  GTTL+I+ PEGP CPLC+A T QR G SG FW+CSRYP+CKGT  +
Sbjct  592  RQSSWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

Query  657  APAQAGPDGQKRSRSRGA  674
            + ++  + G K +++R+A
Sbjct  652  GTGKKKSPG-KSAKPRAA  668

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  722 bits (2732),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/654 (65%), Positives = 543/654 (84%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAVQRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVSMPYWAVDVLLSHAGQSFTASWIPPEGST  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+V+V L  AGQSF A W++ E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPvaqqaadriraardaqvvSVDTERVREAPPLPFDLGTLQEVCSKQLGLDV  300
            D  GRCL+Q+ A  A   +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPTVLDSLVKTDPSLRPLIERLDRQQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLD+L +TDPS+   ++ +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVSA-HHGIIPTLEPANLSAMNEKELAVYRLICAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+++ HHGIIPTLEPANLSAM+EKE  VY LI AH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVTGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMALDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G ++LD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLppapacpqcgapmqqRTGKSGAFWSCSRYPDCKGTLPLES  653
            LV+QY+G+TLS+K+P +P CP C+A   QR G SG FW+CSRYP+CKGT+ + +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  722 bits (2730),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/670 (63%), Positives = 550/670 (83%), Gaps = 3/670 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRSNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  R++GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPIVPERWRVEPKVATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPI+P  W+V  K  TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYTGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAADVLLSHAGQSFTASWIPPEGST  240
            AGYTGVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+ +V L  AGQSF A W++ E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPVAQQAVDRIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSRQLGLDV  300
            D  GRCL+Q+ A  A+  +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPAVLDALLATEPSLRPLLGQLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EVP VLDAL  T+PS+   L  +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTLEPAKLLAMSEKELAVYQLIRGRYLAQFLPHHEFDRTVTQ  419
            RSRAWND K+T+ HHGIIPTLEPA+L AMSEKE  VY+LIR+++LAQFLP HE+DRTV+ 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LACGGQSLVAVGKQIAVIGWRQVLATPEPDAADGEEAQRSQVLPPLASGSRCGVEQVELK  479
            + C +  L AVGK+I + GW+ VL ++ ++   ++ + RSQ+LP L  G+RC+V++++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALRTLPPKPYTQGELVKVMKGVAKLVDDPRLKQKLKETTGIGTEATRASTIKGLLDRGYL  539
            +L+T PPK+YT+G L+K MK +AKLV DPRL QKLKETTGIGTEATRA+TI+GL+DRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  LKKGRAIRASDAAFTLIDAVPAAIADPGMTAIWEQALDMIEAGQMTLDTFIAKQSTWVAQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPG TAIWEQAL MIE G +TLD FIA+QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQHRGATlsialppsppcpqcgapMRQRTGKSGAFWSCSRYPDCKGTLPVESSASKR-  658
            LV+Q +G+TLSI +P +P CP C+A   QR G SG FW+CSRYP+CKGT+ + ++  K  
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSP  659

Query  659  GAPRKRRTVP  668
            G + K R+  
Sbjct  660  GKSAKPRAAT  669

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  710 bits (2684),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/672 (64%), Positives = 555/672 (83%), Gaps = 4/672 (0%)

Query  1    MRLFLCEKPSQGKDIARVLGAKQRGDGCFHGDAITVTWCIGHLVEAAEPDAYGEQYKSWS  60
            MRL+LCEKPSQGKDIA VLGAK RGDGC+ G++++VTW IGHL+E+A PDAYGE+ K+WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IDQLPIIPDPWRIEIKPKTAAQLKIVKALIAQADELVIATDADREGEMIARELLELFSYR  120
            +D LPI+P  W++ +KPKTA+Q+KIVK L+ QA ELVIATDADREGEMIAREL+E  +YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRQALGALRPGSETLPLYHAALARSRADWLVGMNLSRLFTVLGRQ  180
            GPIQRLWLSALN+ASIRQAL +++ GSET PLY +ALARSRADWL+GMN+SRLFT+LGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYDGVLSVGRVQTPTLRLVVDRDREIARFVSVPFWTIELALSSNGQRFTAHWQAPDGST  240
            AGY GVLSVGRVQTPTLRLVVDRDR+I+ F++ PFW++E+ L + GQ F A W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCLQQPVAQSALATLQNARDVEVMSVDTERMREAPPLPFDLGTLQETCSRQLGLDV  300
            D+ GRCL+Q+ A +ALA+L++++    +SVDT R ++++PLPFDL+TLQE CS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRTDCGYLPESMLADVPTILTALVRTDPSLLPLIATLDPTQ  360
            QETLD+AQ+LYETHKATTYPRTDCGYLPESM+ +VP +L AL RTDPS+   +  +DP Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKITA-HHGIIPTLEPANLAAMSDKEQAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND KIT+ HHGIIPTLEPANL+AMS+KE+ VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FASGPERLTATGKQIAVIGWHSVLNEPASNEDTGDDSESPRSQTLPPLENGTRCAMEQVE  479
            F   +  L A GK+I + GW  +++  AS+E+ +DDS + RSQ LP L+ GTRC +++++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFS--ASSEEEADDSGG-RSQILPVLQIGTRCDVQDLH  477

Query  480  LKALTTQPPRPYTQGELIKAMKGVAKLVSDPRLKQILKDTTGIGTEATRASIIQGLIARG  539
            LK+L T+PP++YT+G LIKAMK +AKLV DPRL Q LK+TTGIGTEATRA+ IQGLI RG
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  YLLKKGRAVRGSDAAFTLidaipaaiadpgttaiWEQALERIEAGDMTLDAFVTRQATWV  599
             L+KKG A+R+++AAF+LIDA+P+A+ADPGTTAIWEQAL  IE G +TLD F++RQ++W+
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  TQLVQHYAQTTLAIKlppsppcplcgsTMRQRTSQRGPFWSCTRYPDCKGTLPVEKSKTK  659
            T+LV++Y  TTL+IK+P +P CPLC++   QR +  G FW+C+RYP+CKGT+ +  +K K
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKK  657

Query  660  RRAADTPRRGHS  671
              +  +  R+ +
Sbjct  658  SPGKSAKPRAAT  669

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  706 bits (2669),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/654 (65%), Positives = 540/654 (83%), Gaps = 2/654 (0%)

Query  1    MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWA  60
            MR++LCEKPSQGKDIA VLGA  RG+GC  G GV VTW IGHL+E+ PP++YGE+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYR  120
            ++ LPILP  W+V  K+ TA+QFK+V+QL+ +A ELVIATDADREGEMIARE+I+ CGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLGRQ  180
            GPIQRLWLSALN+ASIR+AL ++K ++ET PLY+SALARSRADWLIGMN+SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGYMGVLSVGRVQTPTLKLVVDRDREIARFVSMPYWAVDVLLSHAGQSFTASWIPPEGST  240
            AGY GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W+V+V L  AGQSF A W++ E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLQQPvaqqaadriraardaqvvSVDTERVREAPPLPFDLGTLQEVCSRQLGLDV  300
            D  GRCL+Q+ A  A   +++++ A  VSVDT R ++++PLPFDL+TLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRSDSGYLPESMlaevlavldallaTDPSLRPLIGQLDRNQ  360
            QETLD+AQ+LYETHKATTYPR+D GYLPESM+ EV  VLDAL  TDPS+   +  +D +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVSA-HHGIIPTLEPANLSAMNEKELAVYRLIRAHYLAQFLPHHEFDRTVAQ  419
            RSRAWND K+++ HHGIIPTLEPANLSAM+EKE  VY LIRAH+LAQFLP HE+DRTVA 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FSCGSQSLAAVGKQIAVIGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCPVGKVDLK  479
            F C +  L AVGK+I + GW+ VL ++++++  ++ + RSQ+LP L+ G  C V  ++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  ALKTLPPKPYTQGELIKAMKTVAKFVTDPRLKQKLRDTTGIGTEATRANIINGLIGRGYL  539
            +LKT PPK+YT+G LIKAMKT+AK+V DPRL QKL++TTGIGTEATRA  I+GLI+RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEHALDMIEAGQMALDTFIEKQSVWVGQ  599
            +KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WE+AL MIE G ++LD FI +QS W+ +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVQQYRGATLSLKLppapacpqcgapmqqRTGKSGAFWSCSRYPDCKGTLPIES  653
            LV+QY+G+TLS+K+P +P CP C+A   QR G SG FW+CSRYP+CKGT+ I +
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  705 bits (2665),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 415/677 (62%), Positives = 542/677 (81%), Gaps = 10/677 (1%)

Query  1    MRVVLCEKPSQGKDIARVLGARQREAGCLAGPGIKVTWGIGHLIEAAPPEAYGEHFQRWS  60
            MR+ LCEKPSQGKDIA VLGA+ R  GC+ G G+ VTWGIGHL+E+APP+AYGEH++ WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LETLPIVPQQWRWVVKADTASQFKVVQRLLAQASELIIATDADREGEMIARELIEYCGYR  120
            L+TLPI+P +W+ +VK+ TASQFK+V++LL QA+EL+IATDADREGEMIARELIEYCGYR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALNDASIRKALGALRASHETLPLYHCALARSHADWLVGINLTRLFTLLGRK  180
            GPIQRLWLSALN+ASIR+AL +++ + ET PLY  ALARS+ADWL+G+N++RLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGFDGVLSVGRVQTPTLKLVADRDREIAAFVPVPFWSIEVSLSAGAQAFSAHWVPPATVT  240
            AG+ GVLSVGRVQTPTL+LV DRDR+I+ F+P PFWS+EV L +++Q+F A WV+   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DAAGRCLqqsaaqhaaaavrtaghaqVTGIDTERVQEGPPLPFDLSTLQEVCSRRLGLDV  300
            D  GRCL+Q+AA  A AA++++  A   ++DT R ++ +PLPFDLSTLQEVCS ++G++V
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKATTYPRTDAGYLPENMLTEVPTVIRSLLKTDPALQPLMQRLDLGQ  360
            QETLD+AQ+LYETHKATTYPRTD GYLPE+M+ EVP V+ +L +TDP++   +Q +D  Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNATKIAA-HHAIIPTLEPADLSKMSEKELAVYRLIRAHYLAQFLPHYAYDRTMVR  419
            RSRAWN  KI++ HH+IIPTLEPA+LS MSEKE  VY LIRAH+LAQFLP   YDRT+  
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LACGGQALQASGKQVVDAGWKAAFAAPSIPGAGAETPEAETDSEAPRDQALPTLHEGMAC  479
            + C +  LQA GK++V +GWK  F+A+S         E E+D  + R Q LP L+ G  C
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASS---------EEEADDSGGRSQILPVLQIGTRC  471

Query  480  EVRSLDLKSLYTKSPPPYTQGELVKAMKTVAKLVTDPRLKQTLRDTTGIGTEATRANIIS  539
            +V+ L+LKSL T +P +YT+G L+KAMKT+AKLV DPRL Q L++TTGIGTEATRA  I 
Sbjct  472  DVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQ  531

Query  540  GLLARGFLVRKGRVVRASKTAMTLIDAVPAAIADPGTTAIWEQALHMIEARTMDLDTFVS  599
            GL+ RG L++KG  +RA+ +A +LIDAVP+A+ADPGTTAIWEQAL MIE  T+ LD F++
Sbjct  532  GLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIA  591

Query  600  KQAAWVSQLVEQHREATLAIRVpagppcplcgaaTRKRTGKTGAFWSCSRYPDCKGTVAI  659
            +Q++W+++LVEQ + +TL+I+VP GP CPLC+A T +R G +G FW+CSRYP+CKGTV I
Sbjct  592  RQSSWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

Query  660  DSAEAGRRNGPRKPRAA  676
            +++       + KPRAA
Sbjct  652  GTGKKKSPGKSAKPRAA  668

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  696 bits (2634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 408/653 (63%), Positives = 534/653 (82%), Gaps = 1/653 (0%)

Query  1    MRLFLCEKPSQGKDIARVLGALRRGNGCYNGPGISVTWCIGHLVEAAPPEAYDERFKRWS  60
            MRL+LCEKPSQGKDIA VLGA  RG+GC +G G++VTW IGHL+E+APP+AY+E++K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDQLPIVPTNWRVDVKADTAAQYKVVKQLLAKTTELVIATDADREGEMIAREILELCHYQ  120
            LD LPI+P++W+V VK+ TA+Q+K+VKQLL ++TELVIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GSIRRLWLSALNEASIRKALTGLRPADETERLYHSALARSRADWLVGMNMSRLFTLLAQR  180
            G+I+RLWLSALNEASIR+AL  ++ + ET  LY SALARSRADWL+GMN SRLFTLL+++
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGHHGVLSVGRVQTPTLRLVVDRDREIERFVPMHYWGIDVHLSYQEQLFLAQWVAPDCAT  240
            +G  GVLSVGRVQTPTLRLVVDRDR+I  F+P  +W+++V+L    Q FLA+WVA +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGRCIRQAMAQQALQSVRQAQRAQVLDMQMDRIREAPPLPFDLGTLQEVCSRRFGLGV  300
            D+ GRC+ QA A  AL +++ +Q A  + ++  R ++++PLPFDL+TLQEVCS +FG+GV
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QQTLEIAQSLYETHKATTYPRSDSGYLPESMWDEASTVLDALIISDPSVEALVQSVNRQQ  360
            Q+TL++AQSLYETHKATTYPR+D GYLPESM DE + VLDAL  +DPS+   +Q ++ +Q
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVSA-HHGIIPTLEPFQIEALSEKERAVYELIRAHYLAQFLPHHEYDRSCAL  419
            RSRAWND K+++ HHGIIPTLEP ++ A+SEKER VYELIRAH+LAQFLP HEYDR+ A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FTCGGHTLRAHGKQIVASGWHRALAPdsttsdddsAQRNQILPPLSTGSDCNVSQVELRT  479
            F C +  L+A GK+IV +GW   +++ S    DDS+ R+QILP L  G+ C+V +++L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LKTQAPKALTQGELIKAMKGVAKLVTDPRLKRTLKETTGIGTEATRANIISGLLNRGYLY  539
            LKT++PKA T+G LIKAMK +AKLV DPRL + LKETTGIGTEATRA  I GL++RG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  MKGRSVRASDAAFTLidavpaaiadpattaIWEQAFDMIENGQMTLDCFIAKQTAWITQL  599
             KG ++RA++AAF+LIDAVP+A+ADP+TTAIWEQA+ MIE+G +TLD FIA+Q++WIT+L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VEHYRTTTLLIHTPGGPNCPLCGASMRQRQGKHGSFWSCSRYPECKGALPVVT  652
            VE+Y+ TTL I  P GP+CPLC+A   QR+G  G FW+CSRYPECKG++ + T
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  674 bits (2550),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/611 (63%), Positives = 493/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G ++ VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDVC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P PFW+++VQL  AGQ F A+W A E + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQDLAQRAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL Q  A  A + +  + +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVNGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C+V++L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G +TL++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  673 bits (2544),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/611 (63%), Positives = 492/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G ++ VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P PFW+++VQL  AGQ F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQSLAQQAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL Q+ A  A + +  + +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILSALQRADASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C+V++L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G + L++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/611 (63%), Positives = 495/611 (82%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGATRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA  +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDTWKMLVKPKTASQFKAVKRLLGEARELIIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A EL+IATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL+++SIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++VQL  AGQ F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNQGLAQQAATAIGNAGTARAVKVTTERMREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL+Q+ A  A +A+ ++ +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPVLREGQDCTVQGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LPVL+ G  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/611 (63%), Positives = 492/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G ++ VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P PFW+++VQL  AGQ F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL Q+ A  A A +  + +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C+V++L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G + L++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  672 bits (2542),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/611 (63%), Positives = 491/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G ++ VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P PFW+++VQL  AGQ F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQDLAQRAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL Q  A  A + +  + +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVNGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C+V++L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G + L++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/611 (63%), Positives = 494/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRGIADFVPVPFWAIDVQLEHAGFGFNAQWRAPDDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR+I++F+P PFW+++VQL  AG +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNQALAQQAAVDIGNAGTARAVKVTTERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL+QA A  A   + ++ +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRSDASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCTVQGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G +TL++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  669 bits (2529),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/611 (63%), Positives = 490/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAAQRFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW++EVQL  A+Q F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQDLAQQAATDIGNAATARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL Q  A  A + + ++ +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLTPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S+      ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALCEGQDCTVHGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L  G  C V++L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFVARQSTWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G +TL++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  669 bits (2530),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/618 (63%), Positives = 494/618 (80%), Gaps = 1/618 (0%)

Query  1    MRLFLCEKPSQAKDIAKILGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA +LGA+ +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALARLLPGQDTFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL  +  G +T+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAGLVFNAQWRAPEGIC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW++EVQL  AG  F A+W A E + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNQALAQQAATDIGNARSARVLKVTTERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL+QA A  A + + ++++A  + V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPVSQHSEAPAILTALQRVDSSLAPLQAHLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S   E P +L AL+R D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVTA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAE  419
            RSRAWND K+T+ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALAPAKGREAPPAQVLPTLCESQDCSVQGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L  +  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEDFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L+DF+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTINGPAVGK  617
            VE+  G  ++I+ P   K
Sbjct  601  VEQYKGTTLSIKVPEGPK  618

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  667 bits (2522),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/611 (64%), Positives = 494/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA+ +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGFGFNAQWRAPDDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++VQL  AG +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNqalaqqaaaDIGNAGTARAVKVTTERVREAAPLPFDLGTLQELCSKKFGLGA  300
            D++GRCL+QA A  A A + ++ +A +V V T R +++APLPFDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRSDASLAPLQPYLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S   E P +L AL+R+D+S++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCTVQGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L+ G  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G +TL++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  662 bits (2504),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/611 (62%), Positives = 485/611 (80%), Gaps = 1/611 (0%)

Query  4    MRLFLCEKPSQAKDIAKVLQATRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRWD  63
            MRL+LCEKPSQ+KDIA VL A  RGDGC  G ++AVTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  64   LSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCRYR  123
            L  LPI+P +WK+LVKPKTASQ+K++K+LL +  EL+IATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  124  GPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  183
            GPI+RLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  184  SGYQGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQLLAEGTPFTAQWRAPEDAC  243
            +GY GVLSVGRVQTPTLRLVVDRDR I++F+P P W++EVQL + G +F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  244  DDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKKLGLGA  303
            D++GRCL Q  A  A   ++ + +A  V++ T R ++ +PLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  304  QETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHHIDPRR  363
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S  +E P +L AL+RTDP+++  ++ IDP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  364  RSRAWNDARV-GAHHGIIPTAAAQSLDRLVGKQCAVYTLIRARYLAQFLPNHEYDRTQAD  422
            RSRAWND ++ G+HHGIIPT  + +L  +  K+  VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  423  FDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAVAEVTLKD  482
            F+C +  L+AVGKRIV PGW+  ++ +     +     SQ LP L+ G  C V ++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  483  LWTQPPKPYTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQALIERGYLL  542
            L T+PPK+YTEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQ+LI+RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  543  KQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFVAKQSAWMSKL  602
            K+G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G ++L+ F+A+QS+W+++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  603  IERCAGLRLTI  613
            +E+  G  L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  662 bits (2504),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/611 (62%), Positives = 485/611 (80%), Gaps = 1/611 (0%)

Query  4    MRLFLCEKPSQAKDIAKVLQATRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRWD  63
            MRL+LCEKPSQ+KDIA VL A  RGDGC  G ++AVTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  64   LSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCRYR  123
            L  LPI+P +WK+LVKPKTASQ+K++K+LL +  EL+IATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  124  GPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  183
            GPI+RLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  184  SGYQGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQLLAEGTPFTAQWRAPEDAC  243
            +GY GVLSVGRVQTPTLRLVVDRDR I++F+P P W++EVQL + G +F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  244  DDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKKLGLGA  303
            D++GRCL Q  A  A   ++ + +A  V++ T R ++ +PLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  304  QETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHHIDPRR  363
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S  +E P +L AL+RTDP+++  ++ IDP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  364  RSRAWNDARV-GAHHGIIPTAAAQSLDRLVGKQCAVYTLIRARYLAQFLPNHEYDRTQAD  422
            RSRAWND ++ G+HHGIIPT  + +L  +  K+  VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  423  FDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAVAEVTLKD  482
            F+C +  L+AVGKRIV PGW+  ++ +     +     SQ LP L+ G  C V ++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  483  LWTQPPKPYTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQALIERGYLL  542
            L T+PPK+YTEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQ+LI+RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  543  KQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFVAKQSAWMSKL  602
            K+G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G ++L+ F+A+QS+W+++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  603  IERCAGLRLTI  613
            +E+  G  L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  662 bits (2504),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/611 (62%), Positives = 485/611 (80%), Gaps = 1/611 (0%)

Query  4    MRLFLCEKPSQAKDIAKVLQATRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRWD  63
            MRL+LCEKPSQ+KDIA VL A  RGDGC  G ++AVTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  64   LSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCRYR  123
            L  LPI+P +WK+LVKPKTASQ+K++K+LL +  EL+IATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  124  GPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  183
            GPI+RLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  184  SGYQGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQLLAEGTPFTAQWRAPEDAC  243
            +GY GVLSVGRVQTPTLRLVVDRDR I++F+P P W++EVQL + G +F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  244  DDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKKLGLGA  303
            D++GRCL Q  A  A   ++ + +A  V++ T R ++ +PLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  304  QETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHHIDPRR  363
            QETLD+AQ+LYETHK  TYPR+DCGYLP+S  +E P +L AL+RTDP+++  ++ IDP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  364  RSRAWNDARV-GAHHGIIPTAAAQSLDRLVGKQCAVYTLIRARYLAQFLPNHEYDRTQAD  422
            RSRAWND ++ G+HHGIIPT  + +L  +  K+  VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  423  FDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAVAEVTLKD  482
            F+C +  L+AVGKRIV PGW+  ++ +     +     SQ LP L+ G  C V ++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  483  LWTQPPKPYTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQALIERGYLL  542
            L T+PPK+YTEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQ+LI+RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  543  KQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFVAKQSAWMSKL  602
            K+G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G ++L+ F+A+QS+W+++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  603  IERCAGLRLTI  613
            +E+  G  L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  661 bits (2499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 382/611 (63%), Positives = 491/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGATRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWN  60
            MRL+LCEKPSQ+KDIA VLGA  +GDGC +G +V VTW IGHLLETAPPD+Y+E+ K W+
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GP+QRLWLSAL+++SIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQAFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++VQL  AGQ+F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNQSLaqqaaaaignagtaraVKVTTERVREAAPLLFDLGTLQELCSKKFGLGA  300
            D++GRCL+Q+ A  A AA+ ++ +A +V V T R +++APL FDL+TLQE+CS KFG+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPLSQHAEAPAILAALQRADAGLAPLQPHLEPQR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S   E P +L AL+R+D++++     ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRVWNDAKVSA-HHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSR WND K+++ HHGIIPT  +++ S ++ K++ VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALSEGQDCTVQGLQLKD  479
            F+C +  L+AVGK+IV PGW+  ++ +     +  +  +Q+LP L  G  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DPRL QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCSGMRMTI  610
            VE+  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  660 bits (2495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 371/591 (63%), Positives = 486/591 (83%), Gaps = 4/591 (0%)

Query  1    MPIIPQHWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCGYRGPI  60
            +PI+P +W+V VKPKTA+QFK+VK LL +AT+LVIATDADREGE+IARE+IE CGYRGPI
Sbjct  64   LPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGPI  123

Query  61   ERLWLSALNDASIRAALGKLRPSAETLPMYHSALARSRADWLVGMNLSRLFTVLGRQAGY  120
            +RLWLSALN+ASIR AL  ++ ++ET P+Y SALARSRADWL+GMN+SRLFT+LGRQAGY
Sbjct  124  QRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQAGY  183

Query  121  DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIVVSLSAGVQAFTAHWVPPNACTDDA  180
             GVLSVGRVQTPTL+LVVDRDR+I+ F++ P+W++ V L ++ Q+F A WV+ +   D+ 
Sbjct  184  TGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEE  243

Query  181  GRCLqqpvaqqamqqIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDVQET  240
            GRCL+Q+ A  A+  ++++ +A  VSV+T R ++ +PLPFDL+TLQEVCS ++G++VQET
Sbjct  244  GRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQET  303

Query  241  LEIAQALYETHKATTYPRSDSGYLPESMFAEVTTVLDSLLKTDPSLRSIIGQLDRLQRSR  300
            L++AQ+LYETHKATTYPR+D GYLPESMF EV  VLD+L +TDPS+   +  +D  QRSR
Sbjct  304  LDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQRSR  363

Query  301  AWNDGKVTA-HHGIIPTLEPANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDHTVAKLSC  359
            AWND K+T+ HHGIIPTLEPANLSAMSEKE  VY LIRAH+LAQFLP HE+D+TVA + C
Sbjct  364  AWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVATFEC  423

Query  360  GGQNLAATGKQVVTPGWRQVLAEPQSEdgdgdgdTAARAQVLPALHEGLACQVADIDLKA  419
             +  L A GK++V PGW+ +++ +  E     +D+++R+Q+LP L+ G  C+V D++LK+
Sbjct  424  NAVLLQAVGKRIVIPGWKVLFSASSEE---EADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  420  LKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLIARGYLV  479
            LKT PPK+YT+G L+K+MK +AKLV DPRL QKLK+T GIGTEATRA  I GLI RG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  480  KKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQL  539
            KKG A+RA++AAF+LIDAVP+A+ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  540  IAQYGNASLSIKAPQGPTCPQCGAPTRQRSSKSGPFWSCSRYPDCKGTLPV  590
            + QY  ++LSIK P+GP CP C+A T QR + SG FW+CSRYP+CKGT+ +
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/611 (63%), Positives = 492/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGANRRGDGCWLGPGVTVTWCIGHLLETAPPDAYDARYKRWV  60
            MRL+LCEKPSQ+KDIA VLGA+ RGDGC  G GV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LGDLPIVPERWKMLVKPKTASQFKAVKRLLGEACELVIATDADREGEMIARELVEHCRYR  120
            L+ LPI+P  WK+LVKPKTASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLMGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWL+GMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWTIEVALQAGDIPFTAQWRAAEDRC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P P+W++EV L +++ +F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLDPEHarqaaaaigsatqaLVVKLRTERMREAPPLPFDLGTLQEICSKKLGLGA  300
            D++GRCLD   A  A AA+ S+  A  V + T R ++++PLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYEIHKLITYPRSDCGYLPLSQHGEAPAIIAALGRSDPSLSELLTLVQPQR  360
            QETLD+AQSLYE HK  TYPR+DCGYLP S  +E P ++ AL R+DPS++  L L++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKV-GAHHGIIPTAAATDLSRLAGKQRAVYTLVRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+ G+HHGIIPT  +++LS ++ K+R VY L+RA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKVIVEPGWRRALPEALTPAKGREPTPAQALPPLSEGQHCNVMGVNLKD  479
            F+C +  L+AVGK IV PGW+  ++ +     +     +Q LP L  G +C+V +++LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVARLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYLS  539
            L T+PPK++TEG LIKAMK +A+LV DPRL QKLK+TTGIGTEATRAG IQGL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KQGKALSASPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQSAWMSKQ  599
            K+G AL A+ AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+A+QS+W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VERCRDLRLTI  610
            VE+ ++  L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  657 bits (2485),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/611 (63%), Positives = 492/611 (81%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAKVLGAQRRGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRWS  60
            MRL+LCEKPSQ+KDIA VLGA+ RGDGC +G +V VTW IGHLLETAPPD+Y+E+ K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDDLPIIPEKWKMTVKPKTASQYKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR  120
            LD LPI+P  WK+ VKPKTASQ+K VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALARLLPGQETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL  +  G ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLESAGNVFNAQWRAPEDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++VQL +AG+ F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLKQALAQQAAHDMQAAGSARVMKIATERVRETAPLPFDLGTLQEVCSKKLGLGA  300
            D++GRCL QA A  A   ++++ +A  + + T R ++ APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDSGYLPLSQHGEAPGILAALQRADASLAPLQPYLDPQR  360
            QETLD+AQ+LYETHK  TYPR+D GYLP S  +E P +L AL+R+D+S++     +DP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDQKVSA-HHGIIPTAAASDPSRLPPKYKAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND+K+++ HHGIIPT  +++ S ++ K + VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHTLRAVGKQIIEPGWRRALPEALMPQKGREAPPAQVLPALREGQDCAVQGLQLKD  479
            F+C +  L+AVGK+I+ PGW+  ++ +   + +  +  +Q+LP L+ G  C VQ+L+LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKETTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLKETTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQNGEMSLDEFVARQSAWMGKL  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M+++G ++LD+F+ARQS+W+ +L
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VQRCSGMRLTI  610
            V++  G  L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/617 (62%), Positives = 484/617 (79%), Gaps = 1/617 (0%)

Query  1    MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGITVTWCIGHLLETAPPDAYDAKYKRWV  60
            MRLYLCEKPSQ+KDIAAVLGA  RGDGC  GNG++VTW IGHLLETAPPDAY+   K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPEKWKMLVKPKTASQFKVVKRLLGEAQELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK+VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLHHERMTFTAQWRAAEEAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P ++W+++V+L     +F A+W A E   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLNPQLardaadamanaatarLVKLRTERMREVAPLPFDLGTLQEICSKKLGLGA  300
            D++GRCL+   A  A  A+ ++ +A  V + T R ++ APLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKVITYPRSDCGYLPVSQHSEAPKILAALGRADAAVNALMPHIDPQR  360
            QETLD+AQSLYETHK  TYPR+DCGYLP S   E P +L AL R+D+++   +  IDP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTGAGKEVGQLTGKHRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT    +++ ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKVVIEPGWKRALPEALTPAKGREAPVPQALPTLVQGQDYAVAKVNLKD  479
            F+C +  L+AVGK ++ PGWK  ++ +     +  +  +Q LP L  G    V  ++LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRAG IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQ  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+A+Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VARCNGMRMTITGPASP  616
            V + +G  ++I  P +P
Sbjct  601  VEQYKGTTLSIKVPEGP  617

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  655 bits (2475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 380/615 (62%), Positives = 489/615 (80%), Gaps = 2/615 (0%)

Query  1    MQLYLCEKPSQARDIAKVLGANRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRWV  60
            M+LYLCEKPSQ++DIA VLGA+ RGDGC++G GV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL + +ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL++ASIR+AL ++K G+ET+ LY +AL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGTAFTAQWQAPDDHC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++FIP PFW+++VQL + G +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLDqaraqqaadamrnaasarLVKLKTERQREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++GRCLDQA A  A  A++++ +A  V + T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPHLDLSR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S  +E   ++ AL ++DP+++     +D  +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAARGLERLSGRPRAVYELIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  +  L  +S + R VYELIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKRIVEPGWKRAMPEALAPTRGSREAPAPQSLPALQQGQDYAVGEVNLK  479
            F+C +  L+AVGKRIV PGWK   + + +   +   +  +Q LP LQ G    V +++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSAS-SEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  DQQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYL  539
              +T+PPK++TEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQGL+DRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSK  599
            +++G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G + L++F+A+QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVERCAGLRMTISGP  614
            LVE+  G  ++I  P
Sbjct  600  LVEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  653 bits (2470),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/656 (58%), Positives = 510/656 (78%), Gaps = 6/656 (0%)

Query  1    MRLFICEKPSQARDIARVLQASHRADGCLKGQNVTITWCVGHLLETAPPETYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  R+DGC+KG+ V++TW +GHLLETAPP++YG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPSQWKLVAKPKVAGQLKVISQLLRTCSEVVIATDADREGEMIAREILERCQYQ  119
            LD LPI+P++WK++ KPK A+Q+K++ QLL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPILRLWLSALDEASIRRALGALRPGEETLPLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GPI RLWLSAL+EASIR+AL +++ G ET PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  SGFDGLLPVGRVQTPTLRLVVERDRAIASFVPLPFWTVDVHLEQDGIRFQARWQAPTAVS  239
            +G+ G+L+VGRVQTPTLRLVV+RDR I++F+P PFW+V+V+L   G  F A+W A   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DAVGRCIDETaaqqaqrrfiqaGTAEIDNAEVEHVREGPPLPFDLGTLQEICSAKLGLGA  299
            D  GRC+D++AA  A   +  + +A   + +  + ++ +PLPFDL+TLQE+CSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QETLATAQALYETHKATTYPRTDCGYLPESMLDEVPRVLHALA-AAPSLGAVLKEVDPSR  358
            QETL  AQ+LYETHKATTYPRTDCGYLPESM+DEVP VL+AL  + PS+G  L+ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  359  RSRAWNSSKITA-HHGIIPTAVTLDLAQLSERERAVYTLIRARYLAQFMPEHEYLKTQAL  417
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+ER VY LIRA++LAQF+P HEY +T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  418  LHSQADQLVARGKQILVRGWKAVI---NEADGNEPAEQAQRLPTLRESATVALIDATLNA  474
            ++ +A  L A GK+I++ GWK ++   +E ++++++ ++Q LP L+ ++   + D  L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  475  QRTQPPKAYTEGTLVKAMKTIANQVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLT  534
             +T+PPKAYTEGTL+KAMKTIA+ V DPRL QKLK++ G+GTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  535  KKKRSLaasaaaHTLIEAVPPEVADPVMTALWEQALDRIESGQLSVDTFLAKQAEWLTRL  594
            KK  +L A+ AA +LI+AVPP VADP  TA+WEQAL  IE G L++D F+A+Q+ W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  595  VRSNATLTLRPPPSKGPFCPVCRSTMRQRKGRTGSFWSCIRYPECKGTKPVAKAKR  650
            V      TL    + GP CP+C +   QRKG +G FW+C RYPECKGT  ++ +K+
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKK  656

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  653 bits (2470),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/656 (58%), Positives = 510/656 (78%), Gaps = 6/656 (0%)

Query  1    MRLFICEKPSQARDIARVLQASHRADGCLKGQNVTITWCVGHLLETAPPETYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  R+DGC+KG+ V++TW +GHLLETAPP++YG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPSQWKLVAKPKVAGQLKVISQLLRTCSEVVIATDADREGEMIAREILERCQYQ  119
            LD LPI+P++WK++ KPK A+Q+K++ QLL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPILRLWLSALDEASIRRALGALRPGEETLPLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GPI RLWLSAL+EASIR+AL +++ G ET PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  SGFDGLLPVGRVQTPTLRLVVERDRAIASFVPLPFWTVDVHLEQDGIRFQARWQAPTAVS  239
            +G+ G+L+VGRVQTPTLRLVV+RDR I++F+P PFW+V+V+L   G  F A+W A   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DAVGRCIDETaaqqaqrrfiqaGTAEIDNAEVEHVREGPPLPFDLGTLQEICSAKLGLGA  299
            D  GRC+D++AA  A   +  + +A   + +  + ++ +PLPFDL+TLQE+CSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QETLATAQALYETHKATTYPRTDCGYLPESMLDEVPRVLHALA-AAPSLGAVLKEVDPSR  358
            QETL  AQ+LYETHKATTYPRTDCGYLPESM+DEVP VL+AL  + PS+G  L+ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  359  RSRAWNSSKITA-HHGIIPTAVTLDLAQLSERERAVYTLIRARYLAQFMPEHEYLKTQAL  417
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+ER VY LIRA++LAQF+P HEY +T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  418  LHSQADQLVARGKQILVRGWKAVI---NEADGNEPAEQAQRLPTLRESATVALIDATLNA  474
            ++ +A  L A GK+I++ GWK ++   +E ++++++ ++Q LP L+ ++   + D  L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  475  QRTQPPKAYTEGTLVKAMKTIANQVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLT  534
             +T+PPKAYTEGTL+KAMKTIA+ V DPRL QKLK++ G+GTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  535  KKKRSLaasaaaHTLIEAVPPEVADPVMTALWEQALDRIESGQLSVDTFLAKQAEWLTRL  594
            KK  +L A+ AA +LI+AVPP VADP  TA+WEQAL  IE G L++D F+A+Q+ W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  595  VRSNATLTLRPPPSKGPFCPVCRSTMRQRKGRTGSFWSCIRYPECKGTKPVAKAKR  650
            V      TL    + GP CP+C +   QRKG +G FW+C RYPECKGT  ++ +K+
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKK  656

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  652 bits (2466),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/615 (62%), Positives = 488/615 (80%), Gaps = 2/615 (0%)

Query  1    MQLYLCEKPSQARDIAKVLGANRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRWV  60
            M+LYLCEKPSQ++DIA VLGA+ RGDGC++G GV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL + +ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL++ASIR+AL ++K G+ET+ LY +AL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGTAFTAQWQAPDDYC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++FIP PFW+++VQL + G +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLDqaraqqaaeamrnaacarLLKLKTERQREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++GRCLDQA A  A  A++++  A  + + T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALAQSDPTLAALEPHLDLSR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S  +E   ++ AL ++DP+++     +D  +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKV-GAHHGIIPTAAVRGLERLSGRPRAVYELIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+ G+HHGIIPT     L  +S + R VYELIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKRIVEPGWKRAMPEALAPARGNREAPAPQSLPTLQQGQDYAVGEINLK  479
            F+C +  L+AVGKRIV PGWK  +  A +   ++  +  +Q LP LQ G    V +++LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWK-VLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  DQQTHPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYL  539
              +T+PPK++TEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQGL+DRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  LRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSK  599
            +++G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G + L++F+A+QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVERCAGLRMTISGP  614
            LVE+  G  ++I  P
Sbjct  600  LVEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  650 bits (2458),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/617 (62%), Positives = 483/617 (79%), Gaps = 1/617 (0%)

Query  1    MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDAKYKRWV  60
            MRLYLCEKPSQ+KDIAAVLGA  RGDGC  GNGV+VTW IGHLLETAPPDAY+   K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPEKWKMLVKPKTASQYKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQ+K VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLRHEHMTFTAQWRAPDDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P ++W+++V+L+    +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNPQlardaadamlnaatarlVKLRTERMREVAPLPFDLGTLQEICSKKLGLGA  300
            D+++RCL+   A  A  A+ ++ +A  V + T R ++ APLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKAITYPRSDCGYLPLSQHSEAPKILAALGRADTAVNELMSHIDPRR  360
            QETLD+AQSLYETHKA TYPR+DCGYLP S   E P +L AL R+D ++   +  IDP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTGAGKEVSQLTGKHRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT    ++S ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LDCAGHALRAVGKVIIEPGWKRALPEALAPAKGREAPAPQALPTLVQGHDYAVAKVNLKD  479
            ++C +  L+AVGK I+ PGWK  ++ +     +  +  +Q LP L  G    V  ++LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRAG IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFIAKQAAWMSKQ  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++FIA+Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VARCNGMRMTITGPASP  616
            V + +G  ++I  P +P
Sbjct  601  VEQYKGTTLSIKVPEGP  617

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  649 bits (2454),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 372/611 (61%), Positives = 487/611 (80%), Gaps = 1/611 (0%)

Query  1    MRLYLCEKPSQAKDIAAVLGARRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDARYKRWV  60
            MRLYLCEKPSQ+KDIAAVLGA+ RGDGC  G +V+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPEKWKMTVKPRTASQYKAVKRLLGEAAELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+ VKP+TASQ+K VK+LL +A+ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDDASIRKALAALKPGNETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL++ASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWAIDVQLLHNGTAFTAQWRAASEVC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P P+W+++VQL   G +F A+W A   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNqalaqqaadamrgaasaRVIKLRTERMREVAPLPFDLGTLQEVCSKKLGLGA  300
            D+++RCL+QA A  A  A++++ +A  + + T R ++ APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETYKVITYPRSDCGYLPLSQHNEAPAILAALRQADPALNTLHDHLDPQR  360
            QETLD+AQ+LYET K  TYPR+DCGYLP S  +E P +L AL ++DP++    + +DP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAAKNLDKLAGKQRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  + NL  ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKQIIEQGWKRALPEALAATKGREAPAPQTLPNLAEGIDCAVAGVQLKD  479
            F+C +  L+AVGK+I+  GWK  ++ +     +  +  +Q LP L  G  C V +++LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVTKQAAWMSKQ  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+++Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VSRCAGLSLTI  610
            V +  G +L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  649 bits (2455),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 372/656 (57%), Positives = 508/656 (78%), Gaps = 5/656 (0%)

Query  1    MRLFICEKPSQARDIARVLQASRRGDGCLTGQNLTVTWCVGHLLETAPPETYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  RGDGC+ G+ ++VTW +GHLLETAPP++YG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPSRWQLVAKPKVAGQLKVISQLLRTCSEVVIATDADREGEMIAREILERCQYQ  119
            LD LPI+P+ W+++ KPK A+Q+K++ QLL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPILRLWLSALDETSIRRALSALRPGEQTLPLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GPI RLWLSAL+E+SIR+AL++++ G +T PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  AGFDGLLPVGRVQTPTLRLVVERDRAIASFVPLPFWTVDAHLEQDGIRFHARWQAPNAVS  239
            AG+ G+L+VGRVQTPTLRLVV+RDR I++F+P PFW+V+ +L   G  F A+W A + + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DAVGRCIDEtaaqqalrrltqaGSAQIDSVEVERVREGPPLPFDLGTLQEICSAKLGLGA  299
            D  GRC+D++AA  AL  L  + +A   SV+  R ++ +PLPFDL+TLQE+CSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QETLATAQALYETHKVTTYPRSDCGYLPESMLDEVPRVLHALAAAAPSLGEILKEVDPSR  359
            QETL  AQ+LYETHK TTYPR+DCGYLPESM+DEVP VL+AL  + PS+G  L+ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  360  RSRAWNSSKITA-HHGIIPTAVTLDLAQLSERERAVYTLIRARYLAQFMPEHEYLKTQAQ  418
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+ER VY LIRA++LAQF+P HEY +T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  419  LHSQADHLVARGKQILARGWKAVI---NEADGNEPAEQAQRLPTLRESATVALIDATLNA  475
            ++ +A  L A GK+I+  GWK ++   +E ++++++ ++Q LP L+ ++   + D  L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  476  QRTQPPKAYTEGTLVRAMKTIANQVADSRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLT  535
             +T+PPKAYTEGTL++AMKTIA+ V D+RL QKLK++ G+GTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  536  KKKRSLaasaaaHTLIEAVPPEVADPVMTALWEQALDRIESGQLSVETFLAKQTEWLTRL  595
            KK  +L A+ AA +LI+AVPP VADP  TA+WEQAL  IE G L+++ F+A+Q+ W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  596  VRSNATLTLRPPPSKGPFCPVCRSAMRQRKGRTGSFWSCIRYPECKGTKPVAKTKR  651
            V      TL    + GP CP+C +   QRKG +G FW+C RYPECKGT  ++  K+
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKK  656

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  647 bits (2445),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/615 (62%), Positives = 489/615 (80%), Gaps = 2/615 (0%)

Query  1    MQLYLCEKPSQARDIAKVLGANRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRWV  60
            M+LYLCEKPSQ++DIA VLGA+ RGDGC++G GV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL + +ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL++ASIR+AL ++K G+ET+ LY +AL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYRGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGAAFTAQWQAPDDLC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++FIP PFW+++VQL + G +F A+W A + L 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLDqaraqqaadamrnaasarLLKLKTERQREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++GRCLDQA A  A  A++++ +A  + + T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPHLDLSR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S  +E   ++ AL ++DP+++     +D  +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKV-GAHHGIIPTaaarglerlagrpraVYELIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+ G+HHGIIPT  +  L  ++ + R VYELIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKRVVEPGWKRAMPEALAPARGNREEHAPQSLPALQQGGDYAVGEITLK  479
            F+C +  L+AVGKR+V PGWK   + +     ++   ++ Q LP LQ G    V ++ LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRS-QILPVLQIGTRCDVQDLHLK  479

Query  480  DQQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYL  539
              +T+PPK++TEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQGL+DRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSK  599
            +++G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G + L++F+A+QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVERCAGLRMTISGP  614
            LVE+  G  ++I  P
Sbjct  600  LVEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  646 bits (2443),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/611 (62%), Positives = 488/611 (80%), Gaps = 1/611 (0%)

Query  1    MRLYLCEKPSQAKDIAAVLGAKRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDAKYKRWV  60
            MRLYLCEKPSQ+KDIAAVLGAK RGDGC  G +V+VTW IGHLLETAPPDAY+   K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIIPDKWKMTVKPRTASQYKAVKRLLGEASELIIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+ VKP+TASQ+K VK+LL +A+EL+IATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDEASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL+EASIR+AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLLHGDTPFNAQWRAPNDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P ++W+++VQL  ++ +F A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNqalaqqaaaaissaasaRVVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGA  300
            D+++RCL+QA A  A AA+ S+ +A  V + T R ++ APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETYKVITYPRSDCGYLPLSQHNEAPGILAALRQADPSLEALREHLEPQR  360
            QETLD+AQ+LYET K  TYPR+DCGYLP S  +E P +L AL ++DPS+    + ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTAAAKNLERLTGKHRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPT  + NL  ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGEALRAVGKQIIEPGWKRALPEALAPAKGREAPAPQTLPTLTQGAECAVADVKLKD  479
            F+C +  L+AVGK+I+ PGWK  ++ +     +  +  +Q LP L  G+ C V D+ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPYTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK+YTEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVTKQAAWMSKQ  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+++Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VTRCAGLSLTI  610
            V +  G +L+I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  645 bits (2438),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 372/614 (61%), Positives = 482/614 (79%), Gaps = 1/614 (0%)

Query  1    MRLFLCEKPSQAKDIASVLGATRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDARYKRWV  60
            MRL+LCEKPSQ+KDIA+VLGA  RGDGC  GNGV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LDDLPIVPQQWKMRVKANTAAQFKAIKRLLGEASELVIATDADREGEMIARELLEHCRYR  120
            LD LPI+P +WK+ VK++TA+QFK +K+LL +A+ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGASTYNLYQSALGRSRADWLIGMNMSRLFTLLGRK  180
            GPIQRLWLSAL++ASIR+AL ++K G+ TY LY SAL+RSRADWLIGMN SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVTLDGNGIPFTAVWRAPQDDC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++V L   G +F A W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DEQGRCLKQEVAQRAAEAMQGAEHAVLEKLKTERMREAPPLLFDLGTLQQVCSKKLGLGA  300
            DE+GRCL Q  A  A  A+++++ A    + T R ++++PL FDL+TLQ+VCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQKLYETDKLITYPRSDCGYLPLSQHAEAPAILAALGQADPTLREVLAHTQTQR  360
            QETLD+AQ LYET+K  TYPR+DCGYLP S   E P +L AL ++DP++   L   + ++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVSA-HHGIIPTLAAGGLTRLSGRPRAVYELIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+++ HHGIIPTL ++ L+ +S + R VYELIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHDLRAVGKQIVEPGWKRALPEALAPSKGREAPAPQALPALHEGQTCAVREVTLKD  479
            F+C +  L+AVGK+IV PGWK  ++ +     +  +  +Q LP L+ G  C V+++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  QFTQPPKPFTEGDLIQAMKNVARLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLT  539
              T+PPK++TEG LI+AMK +A+LV DP L QKLK+TTGIGTEATRAG IQGL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KQGKTLAATSAAFGLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLDEFVAKQSAWMARQ  599
            K+G +L AT AAF+LIDAVP A+ADPGTTAIWEQAL M++ G + LD+F+A+QS+W++R 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  IERCRGLQLTISGP  613
            +E+ +G  L+I  P
Sbjct  601  VEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  640 bits (2417),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 373/656 (57%), Positives = 505/656 (77%), Gaps = 5/656 (0%)

Query  1    MRLFICEKPSQARDIARVLQASRRADGYLKGPNLIVTWCVGHLLETAPPEAYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  R+DG +KG  + VTW +GHLLETAPP+AYG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPSRWQLVAKPKVASQLKVINQLLRTCSEVVIATDADREGEMIAREILERCQYQ  119
            LD LPI+P+ W+++ KPK ASQ+K+++QLL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPILRLWLSALDEASIRRALGALRPGEQTLPLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GPI RLWLSAL+EASIR+AL +++ G +T PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  AGFDGLLPVGRVQTPTLRLVVERDRAIASFVPQPFWTLDAHLEQDGIRFHARWQPTAAAS  239
            AG+ G+L+VGRVQTPTLRLVV+RDR I++F+P+PFW+++ +L   G  F A+W +     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DAVGRCIDEtaaqqalrrltqaGSAQIYSFEVERVREGPPLPFDLGMLQEICSAKLGLGA  299
            D  GRC+D++AA  AL  L  + +A   S +  R ++ +PLPFDL+ LQE+CSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QEALATAQALYENHKATTYPRTDCGYLPESMLDEAPRVLHalaaaaPSLGGILKEVDPSR  359
            QE+L  AQ+LYE HKATTYPRTDCGYLPESM+DE P VL+AL  + PS+G  L+ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  360  RSRAWNSSKITA-HHGIIPTAVTLDLAQLSERERAVYTLIRARYLAQFMPEHEYLKTQAL  418
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+ER VY LIRA++LAQF+P HEY +T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  419  LQSQADQLIARGKQILVRGWK---AVVNEADGNEPAEQAQRLPTLRESATVALIDATLNA  475
            ++ +A  L A GK+I++ GWK   +  +E ++++++ ++Q LP L+ ++   + D  L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  476  QSTQPPKAYTEGTLVKAMKTIANLVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLI  535
              T+PPKAYTEGTL+KAMKTIA+LV DPRL QKLK++ G+GTEATRA+ IQGLID+G LI
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  536  KKKRSLaasaaaHTLIEAVPPEVADPVMTALWEQALDRIESGQLSVETFLAKQAEWLTRL  595
            KK  +L A+ AA +LI+AVPP VADP  TA+WEQAL  IE G L+++ F+A+Q+ W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  596  VRSNATLTLRPPPSKGPFCPVCCSSMRQRKGRTGSFWSCTRYPECKGTKPVAKAKR  651
            V      TL    + GP CP+C +   QRKG +G FW+C+RYPECKGT  ++ +K+
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKK  656

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  636 bits (2402),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/617 (62%), Positives = 490/617 (80%), Gaps = 1/617 (0%)

Query  1    MQLYLCEKPSQAKDIAAVLGATRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRWV  60
            M+LYLCEKPSQ+KDIAAVLGA  RGDGC  G G++VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+PA+WK+ VKPKTASQ+K VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL+EASIR+AL ++K G+ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLSHEGTAFTAQWRADPDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P ++W+++VQL   G +F A+W AD    
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQERClnqalardaaqamanattarTLKVRTERLREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++ RCL+QA A  A  A+ ++ +A T+ V T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEapailaalaqaDPSLAPLREHLQPQR  360
            QETLD+AQSLYET K  TYPR+DCG+LP S   E P +L AL ++DPS++   + ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  KSRAWNDAKVSA-HHGIIPTAAARNLDKLAGKQRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            +SRAWND K+++ HHGIIPT  + NL  ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPTPQTLPALSEGRDCAVDEVKPKD  479
            F+C +  L+AVGK+IV PGWK  ++ +     +  +  +Q LP L  G  C V+++  K 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVTRQAAWMSKH  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F++RQ++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VARCQGMSLTISGPASP  616
            V + +G +L+I  P +P
Sbjct  601  VEQYKGTTLSIKVPEGP  617

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  635 bits (2398),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/617 (62%), Positives = 486/617 (79%), Gaps = 1/617 (0%)

Query  1    MRLFLCEKPSQAKDIAAALGATRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRWV  60
            MRL+LCEKPSQ+KDIAA LGA  RGDGC  G   +VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEATELVIATDADREGEMIARELIEHCRYR  120
            L+ LPI+P  WK+LVKP+TASQFK VK+LL +ATELVIATDADREGEMIARELIE C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G++T++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHDNQAFIAQWRAPSDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P P+W+++V+L    Q+F+A+W A     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNqalaqqaaqamraaasaRLVKLRTERIREAAPLPFDLGTLQEICSKKLGLGA  300
            D+++RCL+QA A  A  A++++ +A  V + T R +++APLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAALCKADPALANLSPHLDPQR  360
            QETLD+AQSLYETHK  TYPR+DCGYLP+S  +E + ++ AL ++DP++++    +DP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDSKVTA-HHGIIPTAAVRGVERLSGKPRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+T+ HHGIIPT     +  +S K R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECAVAEVILKD  479
            F+C +  L+AVGK+IV PGWK   + +     +  +  +Q LP L  G  C V ++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLT  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRAG IQGL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KQGKSLCAAPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQ  599
            K+G +L A+ AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+A+Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VSRCVGMRMSISGPASP  616
            V +  G  +SI  P +P
Sbjct  601  VEQYKGTTLSIKVPEGP  617

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  635 bits (2399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 359/590 (61%), Positives = 481/590 (82%), Gaps = 3/590 (0%)

Query  33   KVVKALLAKATHLVIATDADREGELIAREIIDLCGYRGPIERLWLSALNDASIRTALGKL  92
            K+VK LL +AT+LVIATDADREGE+IARE+I+ CGYRGPI+RLWLSALN+ASIR AL  +
Sbjct  84   KIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGPIQRLWLSALNEASIRQALNTV  143

Query  93   RPSSDTLPMYYSALARSRADWLVGMNLSRLFTVLGLQAGYDGVLSVGRVQTPTLKLVVDR  152
            + +S+T P+Y SALARSRADWL+GMN+SRLFT+LG QAGY GVLSVGRVQTPTL+LVVDR
Sbjct  144  KQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQAGYTGVLSVGRVQTPTLRLVVDR  203

Query  153  DREIAAFKSVPFWAIDVSLSAGGQAFSAQWVPPDGCTDDAGRCLqqpiaqqaaqqiraas  212
            DR+I+ F + PFW+++V L ++GQ+F A+WV+ +   D+ GRCL+Q+ A  A   ++++ 
Sbjct  204  DRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEEGRCLDQAAAAAALAALKSSQ  263

Query  213  saqVVSVETERVREGPPLLFDLGTLQEVCSKQLGLDVQETLEIAQALYETHKATTYPRSD  272
            +A  VSV+T R ++ +PL FDL+TLQEVCS ++G++VQETL++AQ+LYETHKATTYPR+D
Sbjct  264  AASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQETLDVAQSLYETHKATTYPRTD  323

Query  273  SGYLPESMFAEVPTVLDSLLKTDPSLRPIMGQLDRSQRSRAWNDGKVTA-HHGIIPTLEP  331
             GYLPESMF EVP VLD+L +TDPS+   +  +D  QRSRAWND K+T+ HHGIIPTLEP
Sbjct  324  CGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQRSRAWNDKKITGPHHGIIPTLEP  383

Query  332  ANLSAMSEKELAVYRLIRAHYLAQFLPHHEFDRTIAELSCGQQKLVATGKQVAAQGWHLV  391
            ANLSAMSEKE  VY LIRAH+LAQFLP HE+DRT+A + C    L A GK++   GW ++
Sbjct  384  ANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVATFECNAVLLQAVGKRIVIPGWKVL  443

Query  392  LAEPQADEDGETTARSQVLPALREGLACQVAEAEVKALKTLPPKPYTQGELVKSMKGVAR  451
            ++ +  +E +++ +RSQ+LP L+ G  C+V + ++K+LKT PPK+YT+G L+K+MK +A+
Sbjct  444  FSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAK  503

Query  452  FVTDPRLKQKLKDTTGIGTEATRANIITGLLTRGYLVKKGRSIRASDAAFTLIDAVPAAI  511
            +V DPRL QKLK+TTGIGTEATRA  I GL+ RG L+KKG ++RA++AAF+LIDAVP+A+
Sbjct  504  LVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLIKKGSALRATEAAFSLIDAVPPAV  563

Query  512  ADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLIVQYGSTSLSIKVPQGPACPQCG  571
            ADPGTTA+WEQAL MIE G LTLD FI++Q++WI++L+ QY +T+LSIKVP+GP CP C+
Sbjct  564  ADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRLVEQYKGTTLSIKVPEGPKCPLCS  623

Query  572  APTRQRTGKTGPFWSCSRYPDCKGTLPVDSGTSKRG--ASRPRSSGRKGS  619
            A T QR G +G FW+CSRYP+CKGT+ +++G  K    +++PR++  K+S
Sbjct  624  AKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKSPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  635 bits (2401),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/656 (58%), Positives = 507/656 (78%), Gaps = 5/656 (0%)

Query  1    MRLFICEKPSQARDIARVLQASWRGDGYLQGQNVTVTWCIGHLLETAPPESYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  RGDG ++G+ V+VTW IGHLLETAPP++YG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPDHWQLVVKPKVASQLKVIDQLLQRCAEVVIATDADREGEMIAREILERCQYQ  119
            LD LPI+P +W+++VKPK ASQ+K++ QLL++ +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPVLRLWLSALDEASIRRALAALRPGEQTLPLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GP+ RLWLSAL+EASIR+AL +++ G +T PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  AGFDGVLPVGRVQTPTLRLVVERDRAIASFVPHPFWNVDAQLVADGVSFKASWQPPASVC  239
            AG+ GVL+VGRVQTPTLRLVV+RDR I++F+P PFW+V+ QL + G SF A W +   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DDEGRCLDEaaarqaalrlsqHGTARIGTIEVEHVREGPPLPFDLGTLQEVCSAKLGLGA  299
            D+EGRCLD+AAA  A   L    +A   +++  + ++ +PLPFDL+TLQEVCSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QETLGIAQALYETHKATTYPRTDCGYLPESMLDEVPRILHALVAPSPALGQVIKALDPCR  359
            QETL++AQ+LYETHKATTYPRTDCGYLPESM+DEVP +L+AL    P++G+ ++ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  360  RSRAWNSSKITA-HHGIIPTAIKLDLTQLSEREQAVYALIRARYLAQFLPEHEYLKTQVL  418
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+E+ VY LIRA++LAQFLP HEY +T   
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  419  LHSQADQLLARGKQILVRGWKAVI---NETHGNEPGEQTQRLPTLRESVSVALTDAAAII  475
            ++ +A  L A GK+I++ GWK ++   +E +++++G ++Q LP L+ +    + D     
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  476  QRTHPPKAYTEGTLVKAMKTIANQVADLRLKQTLRESCGLGTEATRAAIIQGLIDHGYLT  535
             +T+PPKAYTEGTL+KAMKTIA+ V D RL Q L+E+ G+GTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  536  KKKRSLaasaaaHTLIEAVPAEVADPVLTALWEQALGRIESGQLSVETFLAKQSQWLTRL  595
            KK  +L A+ AA +LI+AVP+ VADP  TA+WEQAL  IE G L+++ F+A+QS W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  596  VRSNASLTLQPPPSKGPLCPVCCSGMRQRKGRTGSFWSCIRYPDCKGTKPVTKAKR  651
            V    + TL    + GP CP+C +   QRKG +G FW+C RYP+CKGT  +  +K+
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKK  656

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  634 bits (2396),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/617 (62%), Positives = 490/617 (80%), Gaps = 1/617 (0%)

Query  1    MQLYLCEKPSQAKDIAAVLGATRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRWV  60
            M+LYLCEKPSQ+KDIAAVLGA  RGDGC  G G++VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+PA+WK+ VKPKTASQ+K VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL+EASIR+AL ++K G+ET+ LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPIAYWAIDVQLSHEGTAFTAQWRADPDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P ++W+++VQL   G +F A+W AD    
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQERClnqalardaamamsnaasarTLKVRTERLREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++ RCL+QA A  A  A+ ++ +A T+ V T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEapailaalaqaDPSLAPLREHLQPQR  360
            QETLD+AQSLYET K  TYPR+DCG+LP S   E P +L AL ++DPS++   + ++P++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  KSRAWNDAKVSA-HHGIIPTAAARNLDKLAGKQRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            +SRAWND K+++ HHGIIPT  + NL  ++ K+R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPAPQTLPALAEGRDCAVDEVKPKD  479
            F+C +  L+AVGK+IV PGWK  ++ +     +  +  +Q LP L  G  C V+++  K 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLV  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRA+ IQGL+DRG L+
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVTRQAAWMSKH  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F++RQ++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VARCQGMSLTISGPASP  616
            V + +G +L+I  P +P
Sbjct  601  VEQYKGTTLSIKVPEGP  617

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  634 bits (2395),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/615 (62%), Positives = 491/615 (80%), Gaps = 2/615 (0%)

Query  1    MQLYLCEKPSQARDIAKVLGANRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRWV  60
            M+LYLCEKPSQ++DIA VLGA+ RGDGC++G GV+VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRYR  120
            L  LPI+P  WK+LVKPKTASQFK VK+LL + +ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPI+RLWLSAL++ASIR+AL ++K G+ET+ LY +AL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYRGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAVDVQLLADGAAFIAQWQAPDDHC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++FIP PFW+V+VQL + G +F+A+W A +   
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQGRCLDqaraqqaadamrnaasarLLKLKTERQREAAPLPFDLGTLQEVCSKKLGLGA  300
            D++GRCLDQA A  A  A++++ +A  + + T R +++APLPFDL+TLQEVCS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPHLDLSR  360
            QETLD+AQ+LYETHK  TYPR+DCGYLP S  +E   ++ AL ++DP+++     +D  +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKV-GAHHGIIPTaaarglerlagrprTVYELIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+ G+HHGIIPT  +  L  ++ + R VYELIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKRVVEPGWKRAMPEALAPARGNREaaapqslpalqqgqDYAVGEIKLK  479
            F+C +  L+AVGKR+V PGWK   + + +   ++  ++ +Q LP LQ G    V ++ LK
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSAS-SEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  DQQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYL  539
              +T+PPK++TEG LIKAMK +AKLV DPRL QKLK+TTGIGTEATRAG IQGL+DRG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSK  599
            +++G AL AT AAFSLIDAVP ++ADPGTTAIWEQAL M++ G + L++F+A+QS+W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVERCAGLRMTISGP  614
            LVE+  G  ++I  P
Sbjct  600  LVEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  633 bits (2393),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/611 (62%), Positives = 481/611 (79%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAAALGATRRGDGCWVGASATVTWCIGHLLETAPPDAYDARYKRWV  60
            MRL+LCEKPSQ+KDIAA LGA  RGDGC  G + +VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEANELVIATDADREGEMIARELVEHCRYR  120
            L+ LPI+P  WK+LVKP+TASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G++T++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPAPFWAIDVKLLHENQAFIAQWRAPSDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I++F+P PFW+++V+L    Q+F+A+W A     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNQPLaqqaadamrhaasarLVKLRTERMREAAPLPFDLGTLQEICSKKLGLGA  300
            D+++RCL+Q+ A  A  A++ + +A  V + T R +++APLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIITALGKTDPALAGLLPHLDPQR  360
            QETLD+AQSLYETHK  TYPR+DCGYLP+S  +E + ++ AL +TDP+++  L  +DP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDAKVTA-HHGIIPTAAVRGVERLIGKPRAVYTLIRARYLAQFLPNHEYDRTQAD  419
            RSRAWND K+T+ HHGIIPT     +  +  K R VY LIRA++LAQFLP HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGQALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECAVADVILKD  479
            F+C +  L+AVGK+IV PGWK   + +     +  +  +Q LP L  G  C V D+ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLT  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRAG IQGL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KQGKALCATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQ  599
            K+G AL AT AAFSLIDAVP A+ADPGTTAIWEQAL M++ G ++L++F+A+Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VSRCVGMRMTI  610
            V +  G  ++I
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  628 bits (2375),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 372/611 (61%), Positives = 481/611 (79%), Gaps = 1/611 (0%)

Query  1    MRLFLCEKPSQAKDIAAALGATRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRWV  60
            MRL+LCEKPSQ+KDIAA LGA  RGDGC  G   +VTW IGHLLETAPPDAY+ + K W 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEDLPIIPEKWKMLVKPRTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR  120
            L+ LPI+P  WK+LVKP+TASQFK VK+LL +A ELVIATDADREGEMIAREL+E C YR
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ  180
            GPIQRLWLSAL++ASIR+AL ++K G++T++LY SAL+RSRADWLIGMN SRLFTLLGRQ
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHDNQAFIAQWRAPSDAC  240
            +GY GVL+VGRVQTPTLRLVVDRDR I+NF+P P+W+++V+L    Q+F+A+W A     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDQDRCLNQPLaqqaaeamrsaasarLVKLRTERIREVAPLPFDLGTLQEICSKKLGLGA  300
            D+++RCL+Q+ A  A  A++S+ +A  V + T R ++ APLPFDL+TLQE+CS K+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAVLCKADPTLASLSPHLDPQR  360
            QETLD+AQSLYETHK  TYPR+DCGYLP+S  +E + ++  L ++DP+++     +DP++
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNDGKVTA-HHGIIPTAAVRGVERLTGKPRAVYTLIRARYLAQFLPSHEYDRTQAD  419
            RSRAWND K+T+ HHGIIPT     +  ++ K R VY LIRA++LAQFLP+HEYDRT A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  FDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECTVAEVILKD  479
            F+C +  L+AVGK+IV PGWK   + +     +  +  +Q LP L  G  C V ++ LK 
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  480  LWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLT  539
            L T+PPK++TEG LIKAMK +AKLV DP L QKLK+TTGIGTEATRAG IQGL+DRG L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  540  KQGKALCAAPAAFSLIDAVPRAIADPGTTAIWEQALDMVQNGEMSLEEFVAKQAAWMSKQ  599
            K+G AL A+ AAFSLIDAVP A+ADPGTTAIWEQAL M+++G ++L++F+A+Q++W+++ 
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  600  VSRCVGMRMSI  610
            V +  G  +SI
Sbjct  601  VEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  625 bits (2361),  Expect = 2e-180, Method: Compositional matrix adjust.
 Identities = 365/648 (57%), Positives = 498/648 (77%), Gaps = 4/648 (0%)

Query  1    MRLYICEKPSQARDIARVLQAHRRGDGYLQGIGVTVTWCVGHLLETAPPETYSDQFKRWS  60
            MRLY+CEKPSQ++DIA VL A  RGDG ++G GV+VTW +GHLLETAPP++Y++++K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  61   LEHLPIIPQHWQLVVKPKVAAQLKAISRLLQACAEVVIATDADREGEMIAREILERCQYQ  120
            L+ LPI+P +W+++VKPK A+Q+K + +LL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  121  GPILRLWLSALDDASIRRALTALRPGEQTLPLYHCALARSRADWLVGINLSRLFTLLGRR  180
            GPI RLWLSAL++ASIR+AL +++ G +T PLY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  181  AGFDGTLPVGRVQTPTLRLVVERDRAIASFVARPFWTVDVVLHADGAEFEARWQPPAAHC  240
            AG+ G L+VGRVQTPTLRLVV+RDR I++F+++PFW+V+V L + G  F A+W +     
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  241  DDAGHCVDQaaaeqvarrlaaarSVQVERVDVERVTEGPPLPFDLGTLQEVCSAKLGLGA  300
            D+ G+C+DQAAA      L ++++     VD  R  + +PLPFDL+TLQEVCSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  301  QETLSVAQALYETHKATTYPRSDCGYLPESMLDEVPRVlkalaaadpalaQRFKEFDPTR  360
            QETL VAQ+LYETHKATTYPR+DCGYLPESM+DEVP VL AL  +DP++++ ++ +DP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  361  RSRAWNSSKVTA-HHGIIPTPVVIPLDQLSERERAVYTLIRARYLAQFLPHHEYLKTQVQ  419
            RSRAWN  K+T+ HHGIIPT     L  +SE+ER VY LIRA++LAQFLP HEY +T   
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  420  LRSQADQVLARGKQIQVRGWKAVI---DETDASEPTEQTQRLPTLQDGASVAAHDATINT  476
            +  +A  + A GK+I + GWK ++    E +A ++  ++Q LP LQ G+    +D  +++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  477  QRTQPPKPYTEGTLVKAMKTIANQVADMRLKQTLKDSIGIGTEATRAAIIQGLIDHGYLT  536
             +T+PPK+YTEGTL+KAMKTIA+ V D RL Q LK++ GIGTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  537  KKKRSLaasaaaHTLIEAVPREVADPVMTALWEQALARIETGQLSVEAFLAKQSAWLTQV  596
            KK  +L A+ AA +LI+AVP  VADP  TA+WEQAL+ IE G L+++ F+A+QS+W+T++
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  597  VRSQASLNLQLPRSKGPACPVCRSPMRQRKGRTGNFWSCVRYPDCKGT  644
            V    +  L +  + GP CP+C +   QRKG +G FW+C RYP+CKGT
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGT  648

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  623 bits (2353),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 348/676 (52%), Positives = 500/676 (74%), Gaps = 6/676 (0%)

Query  1    MKLFLCEKPSQGRDIAVVLGATKRGQGYLTGPGVTVTWAVGHLLETASPEVYGEQYGAPW  60
            M+L+LCEKPSQG+DIA VLGA  RG+G + G GV+VTW++GHLLETA+P+ YGE+    W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKN-W  59

Query  61   RASVLPILPASWQMVVKKETADQFTVICRLLKQADEVVIATDADREGEVIARELLDYCQF  120
                LPILPA W+++VK  TA QF ++ +LLKQA E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGKISRLWLSALDEVSIRAALANILPGEQTASLYLAGLGRARADWLIGMNFTRLYTVKAR  180
            +G I RLWLSAL+E SIR AL  +  G +T +LYL++L+R+RADWLIGMNF+RL+T+ +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  ECGYSDILSIGRVQTPSLALVVFRDREIIAFTAKPYWQVVADLQFDGRIFRADWVPAATY  240
            + GY+++LS+GRVQTP+L LVV RDR+I  F +KP+W V  +L   G+ F A WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIHQNVAQTVVKLCQQTGTATVLEINTKREKHAAPLAFDLGSLQQLCSKKWSMG  300
             DEE RC++Q  A + +   + + +A+ + ++TKR K++APL+FDL++LQ++CS K +MG
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQQVLNIAQNLYETHKATTYPRTDCGYLPTAMQAEIPQVLDAVVKSDPAMRIVVDSLDRT  360
             Q+ L++AQ+LYETHKATTYPRTDCGYLP +M  E+P VLDA+ ++DP++   ++ +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  LISRIWNDKKITA-HHGIIPTKQPCDMNKMTDDERKVYQLIRQHYLLQFLPLHEMDITEA  419
              SR WNDKKIT+ HHGIIPT +P +++ M++ ERKVY+LIR H+L QFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFDIGGQLFRTRGNVVIVPGWKVLFSAGKDESASIGKDDSLGESLPSMVKGNQCQVNEAT  479
            TF+  + L+++ G+ +++PGWKVLFSA+ +E A  +  ++ ++ LP +  G +C+V++  
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEA--DDSGGRSQILPVLQIGTRCDVQDLH  477

Query  480  LRMLQTQPSAHFTEGTLIAAMKNAAAFVSDPQLKKVLKDNAGLGTEATRAGVLDTLFKRG  539
            L+ L+T+P+  +TEGTLI AMK  A +V DP+L + LK+ +G+GTEATRAG ++ L+ RG
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  YLTKKGKYIHATQIASELIAALPTALTNPGLTALWEQALDDIAQGQAELPDFMARQVQWT  599
             L KKG  ++AT+ A  LI A+P A+++PG TA+WEQAL  I QG   L DF+ARQ  W 
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  QYLVEQVQAQKVVITPPPSLPCPVCGGVTRQRQGKNGVFWGCIKYPECSGVVSTVDGKRK  659
              LVEQ ++  + I  P +  CP+C++ T QR+G +GVFW+C +YPEC G V+   GK+K
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKK  657

Query  660  T--RSARHKNIPKKPA  673
            +  +SA+ +    K++
Sbjct  658  SPGKSAKPRAATVKSS  673

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  622 bits (2352),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 373/648 (58%), Positives = 504/648 (78%), Gaps = 5/648 (0%)

Query  1    MRLFICEKPSQARDIARVLQASRRGDGYLEGQNLTVTWCVGHLLETAPPETYGDY-KRWS  59
            MRL++CEKPSQ++DIA VL A  RGDG + G+ ++VTW +GHLLETAPP++YG+  K WS
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWS  60

Query  60   LDDLPIIPSQWKLVSKPKVAGQLNAISQLLRTCSEVVIATDADREGEMIAREILERCQYH  119
            LD LPI+P++WK++ KPK A+Q++ + QLL+  +E+VIATDADREGEMIARE++E C Y+
Sbjct  61   LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYR  120

Query  120  GPILRLWLSALDEASIRRALSALRPGEQTLSLYHCALARSRADWLVGINLSRLFTLLGRR  179
            GPI RLWLSAL+EASIR+AL++++ G +T +LY  ALARSRADWL+G+N+SRLFTLLGR+
Sbjct  121  GPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQ  180

Query  180  AGFDGLLPVGRVQTPTLRLVVERDRAIASFVPQPFWTVDAHLEQDGIRFHARWQAPTAVS  239
            AG+ G+L+VGRVQTPTLRLVV+RDR I++F+P+PFW+V+ +L   G  F A+W A   + 
Sbjct  181  AGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLV  240

Query  240  DAVGRCIDEtaaqqalrrltqaGTAQIDSVEVERGREGPPLPFDLGTLQEICSAKLGLGA  299
            D  GRC+D++AA  AL  L  + +A   SV+  RG++ +PLPFDL+TLQE+CSAK+G+G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  300  QETLATAQALYETHKATTYPRTDCGYLPESMLDEVPRVlhalaaaapslgavlKEIDPSR  359
            QETL  AQ+LYETHKATTYPRTDCGYLPESM+DEVP VL+AL  + PS+G  L+ IDP +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  360  RSRAWNSSKITA-HHGIIPTAVTLDLAQLSERERAVYTLIRARYLAQLMPEHEYLKTQAL  418
            RSRAWN  KIT+ HHGIIPT    +L+ +SE+ER VY LIRA++LAQ++P HEY +T A 
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  419  LHSQADQLVARGKQVLVRGWKAVI---NEADGAEPAEQAQRLPTLRESATVLLIDATLNA  475
            ++ +A  L A GK++++ GWK ++   +E ++ +++ ++Q LP L+ ++   + D  L++
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKS  480

Query  476  QQTQPPKAYTEGTLVKAMKTIASQVAEPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLT  535
             +T+PPKAYTEGTL+KAMKTIA  V +PRL QKLK++ G+GTEATRA+ IQGLID+G L 
Sbjct  481  LKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLI  540

Query  536  KKKRSLaasaaaHTLIEAVPPEVADPVMTALWEQALDRIESGQLSVETFLAKQAEWLTRL  595
            KK  +L A+ AA +LI+AVPP VADP  TA+WEQAL  IE G L+++ F+A+Q+ W+TRL
Sbjct  541  KKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRL  600

Query  596  VRSNATLTLRPPPSKGPFCPVCRSTMRQRKGRTGNFWSCIRYPECKGT  643
            V      TL    + GP CP+C +   QRKG +G FW+C RYPECKGT
Sbjct  601  VEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGT  648

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  620 bits (2341),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 353/668 (53%), Positives = 507/668 (76%), Gaps = 7/668 (1%)

Query  1    MKLFLCEKPSQGRDIAAVLGATKKMPGHQTGNGVCVTWGFGHLLEQASPDAYGEQFGVPW  60
            M+L+LCEKPSQG+DIAAVLGA  +  G   GNGV VTWG+GHLLE A+PDAYGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLK-NW  59

Query  61   RTDVLPVLPTMWQMRVKPDAAAQFSVIQKLLKQADTVVIATDADREGEVIAREILDYCHY  120
              D LP+LP+ W++ VKP +A+QF ++++LLKQA  +VIATDADREGE+IARE+++YC Y
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGKVERLWLSALDEASVRAALATIKPGSTTLPYYLAGLGRARADWQIGMNMTRLYSVKAR  180
            +G ++RLWLSAL+EAS+R AL T+K GS T P YL++L+R+RADW IGMN +RL+++ +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  ENGYGSVLSVGRVQTPTLNLIVVRDRDIVQFVPKPYWNVVAQLAAGGIAFQAQWVPAEAY  240
            + GY +VLSVGRVQTPTL L+V RDRDI +F+PKP+W+V  QL ++G +F A+WV+ E  
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCINPTAAQQVVQLCQKTGQATVAEVETKRETESAPLAFDLGTLQQACSRRFGYG  300
             DEE RC++ +AA   +   + +  A+   V+TKR  ++APL+FDL+TLQ+ CS +FG G
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQQVLDIAQALYETYKATTYPRTDCGYLPTSMRGEIGQVMSSIQQSDPALSAIISRLDMK  360
             Q+ LD+AQ+LYET KATTYPRTDCGYLP SM +E+  V+ +++++DP+++  +  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  HVSRIWNDKKITA-HHGIIPTKQPCDLAKMSEQERNVYQLIRLHYLAQFLPNHEVDATRV  419
            + SR WNDKKIT+ HHGIIPT +P +L+ MSE+ER+VY+LIR H+LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SLHCGGQLFKTSGKAVVVAGWKSLFgkdadedagdagdkaR-LPAMAKGSLCQVTGAEAK  478
            +++C + L+++ GK +V++GWK LF+  ++E+A+D+G++++ LP +  G+ C+V + + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  479  PQQTKPPEHYTEGTLIAAMKNAAQFVTDPRLKKILKENAGLGTEATRAGVIETLLKRGFV  538
            + +T PP  YTEGTLI AMK  A++V DPRL + LKE +G+GTEATRAG I+ L+ RG +
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  539  VKKGKHLLATPIAADLMAVLPAQLKDPGMTALWEQSLDDIAEGRMSLDDFMAKQSAWTMQ  598
            +KKG  L AT  A  L+  +P+ + DPG TA+WEQ+L  I +G ++LDDF+A+QS+W  +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  599  LVAKGQHQTVKITLPPSPPCPICGGVTRQRTGKSGSFWGCVNYPDCNGIVNVGAKKPGRR  658
            LV + +  T+ I +P +P CP+C++ T QR G SG FW+C  YP+C+G VN+G+ K    
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK----  655

Query  659  RKSPAKKS  666
            +KSP+K +
Sbjct  656  KKSPGKSA  663

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  620 bits (2341),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 353/668 (53%), Positives = 507/668 (76%), Gaps = 7/668 (1%)

Query  1    MKLFLCEKPSQGRDIAAVLGATKKMPGHQTGNGVCVTWGFGHLLEQASPDAYGEQFGVPW  60
            M+L+LCEKPSQG+DIAAVLGA  +  G   GNGV VTWG+GHLLE A+PDAYGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLK-NW  59

Query  61   RTDVLPVLPTMWQMRVKPDAAAQFSVIQKLLKQADTVVIATDADREGEVIAREILDYCHY  120
              D LP+LP+ W++ VKP +A+QF ++++LLKQA  +VIATDADREGE+IARE+++YC Y
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGKVERLWLSALDEASVRAALATIKPGSTTLPYYLAGLGRARADWQIGMNMTRLYSVKAR  180
            +G ++RLWLSAL+EAS+R AL T+K GS T P YL++L+R+RADW IGMN +RL+++ +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  ENGYGSVLSVGRVQTPTLNLIVVRDRDIVQFVPKPYWNVVAQLAAGGIAFQAQWVPAEAY  240
            + GY +VLSVGRVQTPTL L+V RDRDI +F+PKP+W+V  QL ++G +F A+WV+ E  
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCINPTAAQQVVQLCQKTGQATVAEVETKRETESAPLAFDLGTLQQACSRRFGYG  300
             DEE RC++ +AA   +   + +  A+   V+TKR  ++APL+FDL+TLQ+ CS +FG G
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQQVLDIAQALYETYKATTYPRTDCGYLPTSMRGEIGQVMSSIQQSDPALSAIISRLDMK  360
             Q+ LD+AQ+LYET KATTYPRTDCGYLP SM +E+  V+ +++++DP+++  +  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  HVSRIWNDKKITA-HHGIIPTKQPCDLAKMSEQERNVYQLIRLHYLAQFLPNHEVDATRV  419
            + SR WNDKKIT+ HHGIIPT +P +L+ MSE+ER+VY+LIR H+LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SLHCGGQLFKTSGKAVVVAGWKSLFgkdadedagdagdkaR-LPAMAKGSLCQVTGAEAK  478
            +++C + L+++ GK +V++GWK LF+  ++E+A+D+G++++ LP +  G+ C+V + + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  479  PQQTKPPEHYTEGTLIAAMKNAAQFVTDPRLKKILKENAGLGTEATRAGVIETLLKRGFV  538
            + +T PP  YTEGTLI AMK  A++V DPRL + LKE +G+GTEATRAG I+ L+ RG +
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  539  VKKGKHLLATPIAADLMAVLPAQLKDPGMTALWEQSLDDIAEGRMSLDDFMAKQSAWTMQ  598
            +KKG  L AT  A  L+  +P+ + DPG TA+WEQ+L  I +G ++LDDF+A+QS+W  +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  599  LVAKGQHQTVKITLPPSPPCPICGGVTRQRTGKSGSFWGCVNYPDCNGIVNVGAKKPGRR  658
            LV + +  T+ I +P +P CP+C++ T QR G SG FW+C  YP+C+G VN+G+ K    
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGK----  655

Query  659  RKSPAKKS  666
            +KSP+K +
Sbjct  656  KKSPGKSA  663

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  617 bits (2333),  Expect = 4e-178, Method: Compositional matrix adjust.
 Identities = 339/670 (51%), Positives = 497/670 (75%), Gaps = 6/670 (0%)

Query  1    MRLFLCEKPSQGRDIAAVLGATKRGTGFLQGPGVTVTWAVGHLLETASPEAYGTQFARPW  60
            MRL+LCEKPSQG+DIAAVLGA  RG G ++G GV+VTW++GHLLETA+P+AYG ++ + W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   NIHALPVLPAQWQMVVKKETEDQFKAIAKLLKQVDEVVIATDADREGEVIARELLDFCQW  120
            ++++LP+LPA+W+++VK  T  QFK + +LLKQ  E+VIATDADREGE+IAREL+++C  
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGPVNRLWLSALDEPSIRNGLNNIKPGNETLALYYAGLGRARADWLTGMNLTRLYTLKAR  180
            RGP++RLWLSAL+E+SIR++LN +K G+ET +LY ++L+R+RADWL GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EKGFDGVLSVGRVQTPTLALVVNRDREIAIFVPKPYWQVNAALQACGMAFVARWVPAKMY  240
            + G+ GVLSVGRVQTPTL LVV+RDR+I+ F+PKP+W V+  L + G +F+A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  TDEEKRCVHQGIAQQVAQLCRQSGQAQVIEQEKKRETEAAPLAFSLGALQQACGKLWDMS  300
             DEE RC++Q+ A       + S  A  +  + KR  ++APL+F L++LQ+ C+   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQQVLDTAQSLYETHKATTYPRTDCGFLPESMREEIPLVLAALAKTDPSLTTTIATLDPR  360
             Q+ LD AQSLYETHKATTYPRTDCG+LPESM +E+P+VL AL +TDPS+  T+  +DP 
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHASDMGNMNDVEKRVYELIRRHYLAQFLPL--YERDVT  417
              SR WNDKKIT+ HHGIIPT ++++++ M++ E++VYELIR H+LAQFLP   Y+R V+
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  418  RLDLSIGGQLFRTTGQVVVVPGWKVLFSSATDRKGNAQGDEDNALPSLNKGDVCTVTVAE  477
             ++    + L+++ G+ +V+PGWKVLFS++++  ++  G+  + LP L+ G  C V   +
Sbjct  420  TFE--CNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLH  477

Query  478  VKDLKTKAPLYFTFDTLIAAMMNAASYVTDLQLKKVLKENAGLGTEATRASIIDTLLKRG  537
            +K LKT +P  +T +TLI AM   A  V D +L + LKE +G+GTEATRA+ I+ L+ RG
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  538  YIVMNRRYLRATEVAMDLMDALPAPLKEPGMTALWEQALDEVAAGRMRLEDFMARQTGWT  597
             ++ +   LRATE A  L+DA+P+++ +PG TA+WEQAL  +  G + L+DF+ARQ++W 
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  598  RQLVAQGLAQNMVIRLPPTPVCPLCGSKTRLRRGEKKAFYRCEKYPSCKGVVNVPDQVKR  657
             +LV Q  +  + I++P  P CPLC++KT  R+G    F  C +YP CKG VN+    K+
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKK  657

Query  658  KSAKSTSRKP  667
             ++KS+  ++
Sbjct  658  SPGKSAKPRA  667

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  613 bits (2317),  Expect = 7e-177, Method: Compositional matrix adjust.
 Identities = 358/594 (61%), Positives = 465/594 (79%), Gaps = 1/594 (0%)

Query  1    MLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDTYDAKYKRWVLADLPIVPQKWKMLVKP  60
            +LGA  RGDGC  GNGV+VTW IGHLLETAPPD+Y+   K W L  LPI+P  WK+LVKP
Sbjct  18   VLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWSLDTLPILPAEWKVLVKP  77

Query  61   KTASQFKAVKRLLGEAQELIIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIR  120
            KTASQFK VK+LL +A EL+IATDADREGEMIAREL+E C YRGPIQRLWLSAL++ASIR
Sbjct  78   KTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGPIQRLWLSALNEASIR  137

Query  121  KALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTL  180
            +AL ++K G+ET++LY SAL+RSRADWLIGMN SRLFTLLGRQ+GY GVL+VGRVQTPTL
Sbjct  138  QALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQAGYTGVLSVGRVQTPTL  197

Query  181  RLVVDRDRSIADFVPVAYWAIDVDLRHDAITFTAQWRAAEDACDDQGRCLNPQLardaaq  240
            RLVVDRDR I++F+P ++W+++V+L+  + +F A+W A E   D++GRCL+   A  A  
Sbjct  198  RLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEEGRCLDQAAAAAALA  257

Query  241  amtqaasarLVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETHKVI  300
            A+  + +A  V + T R ++ APLPFDL+TLQEVCS K+G+G QETLD+AQSLYETHK  
Sbjct  258  ALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQETLDVAQSLYETHKAT  317

Query  301  TYPRSDCGYLPLSQHSDAPKILAALGRADAAVNELMPHIDPQRRSRAWNDAKVSA-HHGI  359
            TYPR+DCGYLP S   + P +L AL R+D+++   +  IDP++RSRAWND K+++ HHGI
Sbjct  318  TYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQRSRAWNDKKITGPHHGI  377

Query  360  IPTGAGKDLGQLAGKQRAVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIE  419
            IPT    +L+ ++ K+R VY LIRA++LAQFLP HEYDRT A F+C +  L+AVGK ++ 
Sbjct  378  IPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVATFECNAVLLQAVGKRIVI  437

Query  420  PGWKRALPEALAPAKGREapapqalptlaqGRDYVVARVNLKDLWTQPPKPFTEGDLIKA  479
            PGWK  ++ +     +  +  +Q LP L  G    V  ++LK L T+PPK++TEG LIKA
Sbjct  438  PGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLKSLKTEPPKAYTEGTLIKA  497

Query  480  MKNVAKLVQDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLID  539
            MK +AKLV+DP L QKLK+TTGIGTEATRAG IQGL+DRG L+K+G AL AT AAFSLID
Sbjct  498  MKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLIKKGSALRATEAAFSLID  557

Query  540  AVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQVARCNGMRMTI  593
            AVP A+ADPGTTAIWEQAL M++ G ++L++F+A+Q++W+++ V + +G  ++I
Sbjct  558  AVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITRLVEQYKGTTLSI  611

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  604 bits (2283),  Expect = 4e-174, Method: Compositional matrix adjust.
 Identities = 344/654 (53%), Positives = 480/654 (74%), Gaps = 3/654 (0%)

Query  1    MRLFICEKPSQGRDLANVLGATRRGDGFLTGPGVTVTWAVGHLLETAPPEAYGQQYGKPW  60
            MRL++CEKPSQG+D+A VLGA  RGDG + G GV+VTW++GHLLETAPP+AYG++  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   SLSALPILPSPWQVVVKKETKSQFKVIERLLRQVDDVVISTDADREGEVIARELLEYCRW  120
            SL +LPILP+ W+V+VK  T SQFK++ +LL+Q  ++VI+TDADREGE+IAREL+EYC  
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  DGPVQRLWLSALDEMSIRAALQDLRPGAETLGMYHAGLGRARADWLIGMNLSRLYTLLAV  180
             GP+QRLWLSAL+E SIR AL+ ++ G+ET  +Y ++L+R+RADWLIGMN+SRL+TLL+ 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  QSGFDGVISVGRVQTPTLALVVRRDREIATFVPKPFWQVKALLSAGGRTFPAQWVPAKVY  240
            Q+G+ GV+SVGRVQTPTL LVV RDR+I+ F+PKPFW V   L ++G++F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  TDEEKRCVHQNIAQQVAHLCRQAGAATVTECETKREKAAAPLAFSLGTLQQACGLLWDMS  300
             DEE RC++Q  A       + + AA+    +TKR K +APL+F L+TLQ+ C+   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEIPSVLSAIGLSDPECSSLLSGLNTS  360
             Q+ LD AQSLYE HKATTYPRTDCGYLPESM +E+P VL A+  +DP  +  L  ++  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTRNAFKFSALSEAERRVYTLIRRNYLAQFLPLHESDITRL  419
              SR WNDKKIT+ HHGIIPT ++ ++SA+SE ER+VY LIR ++LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  QFDIGGQLFRTTGRTEIVMGWKVLFSKEEEDSAGDDDLSIE-LPPLRQGDRCGVNGAEVV  478
             F+  + L+++ G+  ++ GWKVLFS   E+ A+D +   + LP L+ G RC+V++ ++ 
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  479  QQMTRPPAHYTFATLIGAMMNASAFVTDIALRKVLKDNAGLGTEATRAGIVEQLLNRRFI  538
               T PP  YT +TLI AM   + +V D  L + LK+ +G+GTEATRAG ++ L++R  +
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  539  VRKGKQLRATDLGADVIDALPSQLTDPGMTALWEQALDEVAEGRLTLNDFLQRQVGWTRN  598
            ++KG  LRAT+ +  +IDA+P+ ++DPG TA+WEQAL  + +G LTL+DF+ RQ +W   
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  599  LVSMGGQQRVSIRIPPTPSCPLCGGKTRLKKGQKGEFWGCTRYPDCKGIINNDT  652
            LV       +SI++P  P CPLC++KT  +KG  G FW+C+RYP+CKG +N +T
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGT  653

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  602 bits (2275),  Expect = 2e-173, Method: Compositional matrix adjust.
 Identities = 337/669 (51%), Positives = 488/669 (73%), Gaps = 4/669 (0%)

Query  1    MRLFICEKPSQARDIAAVIGATKRGQGFLSAPGITITWARGHLLETASPEVYGTQFEKPW  60
            MRL++CEKPSQ++DIAAV+GA  RG+G + + G+++TW+ GHLLETA+P+ YG ++ K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RIDVLPVLPPVWQMVVKPESLDQFTVISRLLKQVDEVVISTDADREGEVIGWSLLEYCGW  120
             +D LP+LP+ W+++VKP +  QF ++ +LLKQ  E+VI+TDADREGE+I++ L+EYCG 
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGPVFRLWLSALDESSIRTALAAIKPGAETKPLYYAGLGRSRADWLIGMNLTRLYTVKAR  180
            RGP+ RLWLSAL+E+SIR AL ++K G+ET PLY ++L+RSRADWLIGMN++RL+T+ +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  DKGYDGLLSVGRVQTPVLAMVVNREREIAAFVPKPYWQVWVALQSNGVRFSAQWVPAKMY  240
            + GY G+LSVGRVQTP L +VV+R+R+I+ F+PKP+W V V L + G  F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  VDEEKRCIHQGIAQQVAQLCKQTGKATVIEQETKREKEAAPLAFTMGTLQQACGRLWDMS  300
            VDEE RC++Q+ A       K +  A+ +  +TKR K++APL+F ++TLQ+ C+   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQKVLDIAQSLYETHKATSYPRTDCGFLPESMREEIPDVLSALVKIDPSLQELIPQLDTR  360
             Q  LD+AQSLYETHKAT+YPRTDCG+LPESM +E+P VL AL + DPS+   +  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWDDKNITA-HHGIIPTRHVSDMSKMSEQEKQVYLLIRRHYLAQFLPLHEVDATRL  419
              SR W+DK+IT+ HHGIIPT + +++S MSE+E++VY LIR H+LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SLNIGGQLFQTTGRVVVVPGWKRLFSQQDDGEHKESAADEKDQSLPMLVKGDNCAVTGAE  479
            +++  + L+Q+ G+ +V+PGWK LFS   + E  +S++  + Q LP+L  G  C V + +
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG--RSQILPVLQIGTRCDVQDLH  477

Query  480  VKALKTKPPQYFTFQSLIAAMMNAAAYVTDLTLKKVLKENAGLGTEATRGGIVETLLARN  539
            +K+LKT PP+ +T  +LI AM   A  V D  L + LKE +G+GTEATR+G ++ L+ R 
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  FIIIKGRYLRATDIAMDLIDALPHALKEPGMTALWEQALDEVAKGKMTLDNFMSRQTQWI  599
             +I KG  LRAT+ A  LIDA+P A+ +PG TA+WEQAL  + +G +TLD+F++RQ+ WI
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  CQLVSLGAQQDVVVRVPPTPACPLCGSKTRLRKGVKGSFYGCEKYPDCKGMINIPGQGKN  659
             +LV       + ++VP  P CPLC++KT  RKG  G F +C +YP+CKG +NI    K+
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKK  657

Query  660  TAPKTRKKK  668
            ++ K+ K +
Sbjct  658  SPGKSAKPR  666

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  601 bits (2270),  Expect = 4e-173, Method: Compositional matrix adjust.
 Identities = 353/582 (61%), Positives = 460/582 (80%), Gaps = 2/582 (0%)

Query  1    MTVTWCIGHLLETAPPDAYDPRYKRWVLADLPIVPERWKMLVKPKTASQFKAVKRLLGEC  60
            ++VTW IGHLLETAPPDAY+ + K W L  LPI+P  WK+LVKPKTASQFK VK+LL + 
Sbjct  34   VAVTWGIGHLLETAPPDAYGEHLKNWSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQA  93

Query  61   RELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLY  120
             ELVIATDADREGEMIAREL+E C YRGPI+RLWLSAL++ASIR+AL ++K G+ET+ LY
Sbjct  94   TELVIATDADREGEMIARELIEYCGYRGPIQRLWLSALNEASIRQALNTVKQGSETYPLY  153

Query  121  HAALGRSRADWLIGMNMSRLFTLLGRQSGYRGVLPVGRVQTPTLRLVVDRDRSIADFIPV  180
             +AL+RSRADWLIGMN SRLFTLLGRQ+GY GVL+VGRVQTPTLRLVVDRDR I++FIP 
Sbjct  154  LSALARSRADWLIGMNFSRLFTLLGRQAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPK  213

Query  181  PFWAIDVQLLADGAAFTAQWQAPDDLCDDQGRCLDqaraqqaadamrnaasarLLKLKTE  240
            PFW+++VQL + G +F A+W A + L D++GRCLDQA A  A  A++++ +A  + + T 
Sbjct  214  PFWSVEVQLWTAGQSFLAKWVADEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTK  273

Query  241  RQREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQLG  300
            R +++APLPFDL+TLQEVCS K+G+G QETLD+AQ+LYETHK  TYPR+DCGYLP S ++
Sbjct  274  RGKDPAPLPFDLSTLQEVCSAKFGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFD  333

Query  301  EARAIVAALTQADPTLAALQPHLDLSRRSRAWNDAKV-GAHHGIVPTaaarglerlagrp  359
            E   ++ AL ++DP+++     +D  +RSRAWND K+ G+HHGI+PT  +  L  ++ + 
Sbjct  334  EVPMVLDALNRTDPSIGKTLQLIDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKE  393

Query  360  raVYELIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKRVVEPGWKRAMPEALAPARG  419
            R VYELIRA++LAQFLP HEYDRT A F+C +  L+AVGKR+V PGWK   + +     +
Sbjct  394  RKVYELIRAHFLAQFLPTHEYDRTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEAD  453

Query  420  NREAHAPQSLPALQQGQDYAVGEITLKDQQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQ  479
            +  +++ Q LP LQ G    V ++ LK  +T+PPK++TEG LIKAMK +AKLV DPRL Q
Sbjct  454  DSGGRS-QILPVLQIGTRCDVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQ  512

Query  480  KLKDTTGIGTEATRAGIIQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIADPGTTAIW  539
            KLK+TTGIGTEATRAG IQGL+DRG L+++G AL AT AAFSLIDAVP ++ADPGTTAIW
Sbjct  513  KLKETTGIGTEATRAGTIQGLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIW  572

Query  540  EQALDMVQSGEMPLEEFVAKQSAWMSKLVERCAGLRMTISGP  581
            EQAL M++ G + L++F+A+QS+W+++LVE+  G  ++I  P
Sbjct  573  EQALTMIEQGTLTLDDFIARQSSWITRLVEQYKGTTLSIKVP  614

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  600 bits (2265),  Expect = 1e-172, Method: Compositional matrix adjust.
 Identities = 346/670 (52%), Positives = 487/670 (73%), Gaps = 4/670 (0%)

Query  1    MRLFLCEKPSQGRDLAAVLGASRRGEGFMTGNGVTVTWAVGHLLETAPPEVYGQQYGKPW  60
            MRL+LCEKPSQG+D+AAVLGA  RG+G + GNGV+VTW++GHLLETAPP+ YG++  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   SLSALPILPSRWQVVVKKDTQDQFKVIEKLLRQADEVVIATDADREGEVIARELLDYCGW  120
            SL +LPILP+ W+V+VK  T  QFK++ +LL+QA E+VIATDADREGE+IAREL++YCG 
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  DGRILRLWFSALDELSVRAALSDLRPGQASVGMYHAGLGRSRADWLIGMNLSRLYTLRAA  180
             G I RLW+SAL+E S+R AL+ ++ G  +  +Y ++L+RSRADWLIGMN+SRL+TL + 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGFEGVVSVGRVQTPTLALVARRDREIAAFVPKPYWQVKATLSASGVSFQASWVPAAVY  240
            +AG+ GV+SVGRVQTPTL LV  RDR+I+ F+PKP+W V   L ++G SF A WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  ADEEKRCIHQNIAQQVAQLCRQAGVSTVTEYETKREKEAAPLAFSLGTLQRACGKMWNMS  300
             DEE RC++Q  A       + +  ++    +TKR K++APL+F L+TLQ  C+    M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQKVLDTAQSLYETHKATTYPRTDCGWLPKSMREEIPAVFDAMARTDPSPEFASLLSQLD  360
             Q  LD AQSLYETHKATTYPRTDCG LP SM +E+P V+DA+ RTDPS  ++  L  +D
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPS--IGKTLQLID  357

Query  361  RGFASRIWNDKKITA-HHGIIPTRNAVQLSSLTETERQVYLLIRRNYLAQFLPLCESDAT  419
                SR WNDKKIT+ HHGIIPT ++ +LS+++E ER+VY LIR ++LAQFLP  E D T
Sbjct  358  PEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRT  417

Query  420  RISFDIGGQLFRTTGRTEVLKGWKVLFtkdeedkdtaeedIAGSLPPLSKGAQCGVTDAE  479
              +F+  + L+++ G+  V+ GWKVLF+   E+      + +  LP L  G++C+V D +
Sbjct  418  VATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLH  477

Query  480  VKQLMTQPPAHYTFDTLIGAMMNAAAYVTDLQLRKILKENAGLGTEATRAGIIEQLLSRR  539
            +K L T+PP  YT +TLI AM   A  V D +L + LKE +G+GTEATRAG I+ L+ R 
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  FITLKGSKLLATDLGADVIDALPPQLTDPGMTALWEQALDEVAAGRMNLNDFLQRQTAWT  599
             +  KGS L AT+ +  +IDA+PP ++DPG TA+WEQAL  +  G + L+DF+ RQ++W 
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  STLVSQGMQQRISIRVPPSPPCPLCGSKTALRRSPKGEFRSCTRYPECKGIISLDSGRRK  659
            + LV Q     +SI+VP +P CPLC++KT+ R+++ G F++C+RYPECKG +++++G++K
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKK  657

Query  660  SPARAKSPKT  669
            SP+++  P++
Sbjct  658  SPGKSAKPRA  667

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  598 bits (2260),  Expect = 3e-172, Method: Compositional matrix adjust.
 Identities = 333/668 (50%), Positives = 488/668 (74%), Gaps = 3/668 (0%)

Query  1    MRLFICEKPSQARDIAAVLGATKRGQGFLSAPGITITWARGHLLETASPEVYGTQFEKPW  60
            MRL++CEKPSQ++DIAAVLGA  RG+G + + G+++TW+ GHLLETA+P+ YG ++ K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RIDVLPVLPPVWQMVVKSESSDQFTVISRLLKQVDEVVISTDADREGEVIGWSLLEYCGW  120
             +D LP+LP+ W+++VK+ ++ QF ++ +LLKQ  E+VI+TDADREGE+I++ L+EYCG 
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGPVFRLWLSALDESSIRAALAAIKPGSETKPLYYAGLGRSRADWLIGMNLTRLYTVKAR  180
            RGP+ RLWLSAL+E+SIR AL ++K GSET PLY ++L+RSRADWLIGMN++RL+T+ +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  DKGYDGLLSVGRVQTPVLAMVVNREREIATFVPKPYWQVWVALQSNGVRFSAQWVPAKMY  240
            + GY G+LSVGRVQTP L +VV+R+R+I+ F+PKP+W V V L + G  F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  VDEEKRCIHQDIAQQVAQLCKQTGKATVIEQETKREKEAAPLAFTMGTLQQACGRLWDMS  300
            VDEE RC++Q  A       K +  A+ +  +TKR K++APL+F ++TLQ+ C+   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQKVLDIAQSLYETHKATSYPRTDCGFLPESMREEIPDVLSALVKIDPSLQALISQLDTR  360
             Q  LD+AQSLYETHKAT+YPRTDCG+LPESM +E+P VL AL + DPS+   +  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWDDKKMTA-HHGIIPTRHVCDMSKMSDQEKQVYVLIRRHYLAQFFPLHEVDFTRL  419
              SR W+DKK+T+ HHGIIPT +  ++S MS++E++VY LIR H+LAQF+P HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SLNIGGQLFQTTGRVVVVPGWKRLFSQDDGEHKEAAADEKDQSLPMLVKGDNCGVAGSEV  479
            +++  + L+Q+ G+ +V+PGWK LFS    E+ + +++ + Q LP+L  G  C+V + ++
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGG-RSQILPVLQIGTRCDVQDLHL  478

Query  480  KALKTKPPQYFTFQSLIAAMMNAAAYVTDLTLKKVLKENAGLGTEATRGGIVETLLARNF  539
            K+LKT PP+ +T  +LI AM   A  V D  L + LKE +G+GTEATR+G ++ L+ R  
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  ISIKGRYLRATDIAMDLIDALPHALKEPGMTALWEQALDEVAKGRMTLDSFMSRQTQWIC  599
            +  KG  LRAT+ A  LIDA+P A+ +PG TA+WEQAL  + +G +TLD F++RQ+ WI 
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  QLVSLGTQQDVVVRVPPTPACPLCGSKTRLRKGAKGAFYGCEKYPDCKGMINVPGQSKNA  659
            +LV       + ++VP  P CPLC++KT  RKG+ G F +C +YP+CKG +N+    K++
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKS  658

Query  660  ASKTRKKK  667
            ++K+ K +
Sbjct  659  PGKSAKPR  666

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  597 bits (2256),  Expect = 5e-172, Method: Compositional matrix adjust.
 Identities = 346/650 (54%), Positives = 478/650 (74%), Gaps = 4/650 (0%)

Query  1    MQLYLCEKPSQAKDIARVLGISKRGQGFISADNITVTWAIGHLLEQASPDAYGEQFGKPW  60
            M+LYLCEKPSQ+KDIA VLG   RG+G I ++ ++VTW+IGHLLE A+PDAYGE++ K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RVDVLPVLPDNWKMVVKPQTRDQFTVISKLLKQAGEVIIATDADREGEVIARELLAYCGY  120
             +D LP+LP +WK++VKP+T  QF ++ +LLKQA E++IATDADREGE+IAREL+ YCGY
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGAVRRLWLSALDEASIREALAGILPGENTAKLYDAGLGRSRADWLIGMNLTRLYTLIAR  180
            RG+++RLWLSAL+EASIR+AL  +  G +T  LY ++L+RSRADWLIGMN++RL+TL++R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  ESGVSDVLSVGRVQTPTLAIVVNRDKEIADFVPVPWWQVQVLLEKDGVRFRATWQAAAQY  240
            ++G ++VLSVGRVQTPTL +VV+RD++I++F+P P W V+V L   G  F A W A    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDDEKRCVNKQAANAVGQLCQQQKGATVLEVSQKRDKTPAPLCFDLGTLQLVCSRKFGMG  300
             D+E RC+++ AA A     +  ++A+ + V  KR+K PAPL FDL+TLQ VCS KFGMG
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AKETLAVAQSLYETHKATTYPRTDCGYLPTSMQKEIPEVMGSVAKSDPSVAPVLAQLDRG  360
             +ETL VAQSLYETHKATTYPRTDCGYLP SM  E+P V++++ ++DPS++  L  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRVWNDKKITA-HHAIIPTRQAFDLSRLSADELKVYQLIRQHYFAQFLPLQESDVTDA  419
              SR WNDKKIT+ HH+IIPT ++ +LS +S  E KVY+LIR H++AQFLP +E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SFNIGGQLFLAKGKVNVITGWTCLFQKEIQEDPPEDDDMA--LPALNKGDSCIVNGASVG  477
            +F+  + L+ A GK  VI GW  LF    +E++ + ++ +  LP L+ G  C V++  + 
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  DKVTSPPKPFTEGTLIAAMKNAASFVSDPKLKKVLRDNAGLGTEATRAGVLETLFSRHYL  537
               T PPK++TEGTLI AMK  A +V DP+L + L++ +G+GTEATRAG ++ L+ R  L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  EKKGKHIHATLLARELIAALPETLTSPGMTALWEQALDDIAQGKMSLDTFIQKQLQWTRH  597
             KKG  ++AT  A  LI A+P +++ PG TA+WEQAL  I QG ++LD FI +Q  W  +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVDKGRADTVKITAPVTPPCPVCKGLTRKRKGKNGDFWGCIRYPECNGIV  647
            LV++ ++ T+ I  P  P CP+C + T +RKG +G FW+C RYPEC+G V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  594 bits (2242),  Expect = 6e-171, Method: Compositional matrix adjust.
 Identities = 338/652 (52%), Positives = 477/652 (74%), Gaps = 2/652 (0%)

Query  1    MRLFICEKPSQGRDLAAVLGATQRGDGFLAGSGITVTWAVGHLLETAPPEAYGQQYGKPW  60
            MRL++CEKPSQG+D+AAVLGA  RGDG + G+G++VTW++GHLLETAPP+AYG++  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   TLAALPIIPSPWQVVVKKETQHQFKIIERLLRQVDEVIIATDADREGEVIARELLDYCRW  120
            +L +LPI+P+ W+V+VK  T  QFKI+ +LL+Q  E++IATDADREGE+IAREL++YC  
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  EGPVQRLWLSSLDELSIRAALQNLRPGGETLGMYHAGLGRARADWLTGMNLSRLYTLRAA  180
             GP+QRLWLS+L+E SIR AL+ ++ G+ET  +Y ++L+R+RADWL GMN+SRL+TL + 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGFDGVVSVGRVQSPTLALVVRRDREIAAFVPKPYWQVKAQLSAGGITFPAQWVPAKVY  240
            +AG+ GV+SVGRVQ+PTL LVV RDR+I+ F+PKP+W V  QL ++G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  TDEEKRCIHQNIAQQVVQICRQSGEATVTECETKREKASPPLAFSLGTLQQAASRLWDMS  300
             DEE RC++Q  A   +   + S  A+    +TKR K ++PL+F L+TLQ+  S   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQQVLDTAQSLYEKHKATSYPRTDCGYLPESMREEIPALLDAIGRTDPECLPLLSQLDAS  360
             Q+ LD AQSLYE HKAT+YPRTDCGYLPESM +E+P +LDA+ RTDP     L  +D+ 
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  LVSRIWNDKKITA-HHGIIPTRNAFQLSALSETERQVYMLIRRNYLAQFLPLHESDITRL  419
              SR WNDKKIT+ HHGIIPT ++ +LSA+SE ER+VY LIR ++LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  AFDIGGQLFRTTGRTEVVKGWKVLFGKaeeegsaaddeavvaLPPLKKDDRCGVTGAEVV  479
            +F+  + L+++ G+  V+ GWKVLF+ + EE +   +     LP L+ + RC+V + ++ 
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  QLMTRPPAHYTFATLIGAMMNAAAFVTDVALRKVLKDNAGLGTEATRAGIVEQLLNRRFI  539
             L T PP  YT +TLI AM   A +V D  L + LK+ +G+GTEATRAG ++ L++R  +
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VRKSSKLLATDLGSDVIDSLPPQLTEPGMTALWEQALDEVAAGRMSLSDFLQRQTGWTRN  599
            ++K+S L AT+ +  +ID++PP +++PG TA+WEQAL  +  G ++L DF+ RQ++W   
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVSQGAQQQVSIRIPPTPPCPLCGGKTRLRKGQKGDFWSCQRYPDCKGVINI  651
            LV Q     +SI++P  P CPLC++KT  RKG  G FW+C RYP+CKG +NI
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNI  651

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  591 bits (2231),  Expect = 5e-170, Method: Compositional matrix adjust.
 Identities = 340/655 (52%), Positives = 476/655 (73%), Gaps = 4/655 (0%)

Query  1    MRLFLCEKPSQGRDLAAVLGATRRGEGFLTGNGVTVTWAVGHLLETAPPEVYGQQYGKPW  60
            MRL+LCEKPSQG+D+AAVLGA  RG+G + GNGV+VTW++GHLLETAPP+ YG++  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   SLSVLPILPSRWQVVVKKDTQDQFKVIEKLLRQADEVVIATDADREGEVIARELLDYCGW  120
            SL  LPILP+ W+V+VK  T  QFK++ +LL+QA E+VIATDADREGE+IAREL++YCG 
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  EGRILRLWFSALDELSVRAALSDLRPGQASVGMYHAGLGRSRADWLVGMNLSRLYTLRAA  180
             G I RLW+SAL+E S+R AL+ ++ G  +  +Y ++L+RSRADWL+GMN+SRL+TL + 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGFEGVVSVGRVQTPTLALVVRRDREIAAFVPKPFWQVKAVLSASGVSFQASWVPAAVY  240
            +AG+ GV+SVGRVQTPTL LVV RDR+I+ F+PKPFW V   L ++G SF A WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  TDEEKRCIHQNIAQQVAQLCRQAGVATVTEYETKREKEAAPLVFSLGTLQRACGRMWNMS  300
             DEE RC++Q  A       + +  A+    +TKR K++APL F L+TLQ  C+    M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQQVLDTAQSLYETHKATTYPRTNCGWLPESMREEIPAVFDAMARTDPSPEFASLLSQLD  360
             Q+ LD AQSLYETHKATTYPRT+CG LPESM +E+P V+DA+ RTDPS  ++  L  +D
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPS--IGKTLQLID  357

Query  361  RGFVSRIWNDKKITA-HHGIIPTRNAVQLSGLTETERQVYLLIRRNYLAQFLPLCESDAT  419
                SR WNDKKIT+ HHGIIPT ++ +LS+++E ER+VY LIR ++LAQFLP  E D T
Sbjct  358  PEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRT  417

Query  420  RISFDIGGQLFRTTGRTEVLKGWKVLFTKDEENKNAADDENAGALPPLRKGAQCGVTGAE  479
              +F+  + L+++ G+  V+ GWKVLF+   E+     +  +  LP L+ G++C+V + +
Sbjct  418  VATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLH  477

Query  480  VKQLMTQPPAHFTFDTLIGAMMNAAAYVTDLQLRKILKENAGLGTEATRAGIIEQLLSRR  539
            +K L T+PP  +T +TLI AM   A  V D +L + LKE +G+GTEATRAG I+ L+ R 
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  FITLKGSKLLATDLGADVIDALPAQLTDPGMTALWEQALDEVAAGRMNLNDFLQRQTAWT  599
             +  KGS L AT+ +  +IDA+P+ ++DPG TA+WEQAL  +  G + L+DF+ RQ++W 
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  ATLVSQGMQQRISIRVPPSPPCPLCGSKTALRRSPKGEFRSCTRYPECKGIISLD  654
            + LV Q     +SI+VP +P CPLC++KT+ R+++ G F++C+RYPECKG ++++
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  590 bits (2227),  Expect = 1e-169, Method: Compositional matrix adjust.
 Identities = 338/657 (52%), Positives = 485/657 (74%), Gaps = 13/657 (1%)

Query  3    RLFLCEKPTQARDIAKVLGASEKGNGCLKGRGITVTWGFGHLLEQANPEAYDPALKRWSM  62
            RL+LCEKP+Q++DIA VLGA  +G+GC+KG G++VTWG+GHLLE A P+AY+  LK WS+
Sbjct  2    RLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNWSL  61

Query  63   ESLPILPTQWKLEVKPSAKKQFTVVKKLLSSASEVVIATDADREGEMIAREILEACQFSG  122
            ++LPILP++WK+ VKP +  QF +VK+LL  A+E+VIATDADREGEMIARE++E C + G
Sbjct  62   DTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRG  121

Query  123  GVSRLWLPALDEASIRKALGDIRPGESTRLLYHAALGRSRADWLVGMNLTRAFTMRAKQL  182
             + RLWL+AL+EASIR+AL  ++ G  T  LY +AL+RSRADWL+GMN++R FT+ ++Q 
Sbjct  122  PIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQA  181

Query  183  GYDLLLSVGRVQTPVLKLVVDRDREIANFVPKPFWEVVAVFQAEGGTFQAKWQPADDDVL  242
            GY  +LSVGRVQTP L+LVVDRDR+I+NF+PKPFW V   + + G +F AKW  AD+ ++
Sbjct  182  GYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKW-VADEYLV  240

Query  243  DESGRCINQSAAQAVVARCQ-GLPGQVTTLETTRKREAPPLAMDLGTLQQTCSKRWGYGA  301
            DE GRC++Q+AA A +A  + + ++   +++T R ++++PL+ DL+TLQ+ CS + G G 
Sbjct  241  DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGV  300

Query  302  QQVLDIAQALYETHKATTYPRTDCRYLPLSQLDDAQQVVTALLTSDGELAPVVQSLDLTR  361
            Q+ LD+AQ+LYETHKATTYPRTDC YLP S +D+   V+ AL  +D  ++  +Q +D  +
Sbjct  301  QETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQ  360

Query  362  KSRVWNDSKITA-HHGIIPTTSPCDTSKMSEAEWNVYDLVRRHYLAQFLPPHEYDHTDVA  420
            +SR WND KIT+ HHGIIPT  P + S MSE E++VY+L+R H+LAQFLP HEYD+T  +
Sbjct  361  RSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVAT  420

Query  421  LEVAGERFATTGRQVQVEGWKVLFRNVQQDDAAGDEATAKTSSQALPPLQAHANVPQSSL  480
            +E  +  + + G+++ + GWKVLF    +++A  D++ ++  SQ LP LQ  +      L
Sbjct  421  FECNAVLLQAVGKRIVIPGWKVLFSASSEEEA--DDSGGR--SQILPVLQIGTRCDVQDL  476

Query  481  DLVSKTTTPPKPFAEGTLIGAMKNAARFEPNPKLKARLKESAGIGTEATRAGIIETLLKR  540
            +L S  T PPK+++EGTLI AMK  A++  +P+L  +LKE++GIGTEATRAG I+ L+ R
Sbjct  477  HLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDR  536

Query  541  KFLTKKGRAIVATATGRQLIDALPEVVTNPGMTALWEQALDSVAAGELSLEDFMAKQQTL  600
              L KKG A+ AT ++  LIDA+P  V++PG TA+WEQAL  +  G L+L+DF+A+Q + 
Sbjct  537  GSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSW  596

Query  601  VERLIEQAKSAT--INLPQEPAKSKACPECGAPMKKRKNDYGSFWGCTKYPDCKGMV  655
            + RL+EQ K++T  I++P+ P     CP C+A   +RK   G FW+C++YP+CKG V
Sbjct  597  ITRLVEQYKGTTLSIKVPEGP----KCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  590 bits (2228),  Expect = 9e-170, Method: Compositional matrix adjust.
 Identities = 339/659 (52%), Positives = 476/659 (73%), Gaps = 4/659 (0%)

Query  1    MQLYLCEKPSQAKDIARVLGVSQRGQGCINGGNITVTWAVGHLLETATPEIYGEQFGRPW  60
            M+LYLCEKPSQ+KDIA VLG   RG+GCI+G  ++VTW++GHLLETA P+ YGE++ + W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RAEVLPIIPDRWQMTVKKDTADQFAVIKKLLKQASEVVIATDADREGEVIARELMEYCNY  120
              + LPI+P  W++ VK  TA QF ++K+LLKQA+E+VIATDADREGE+IAREL+EYC Y
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGAVRRLWLSALDEASIKKALGEMLPGDKTEMLYQAGVGRSRADWLIGMNLTRLYTLKAG  180
            RG+++RLWLSAL+EASI++AL  +  G  T  LY ++++RSRADWLIGMN++RL+TL + 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGVSEVFSVGRVQTPTLAIVVNRDLEIAGFTPKPWWKVRAQLQKDDVSFEAEWVAAAQY  240
            +AG + V+SVGRVQTPTL +VV+RD +I+ F PKP W V  QL   + SF A WVA    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDDEKRCVNHPIAQAVQQLCQKAGSGSVISVEKKRDKTPAPLCFTLGTLMEVCNKKWGFG  300
             D+E RC++++ A A     + + ++S +SV+ KR+K PAPL F L+TL EVC+ K G G
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANEVLSIAQSLYETHKATTYPRTDCGYLPVSMREEVRDVLQAIQHSDPSITPELARLDTA  360
             +E L +AQSLYETHKATTYPRTDCGYLP SM +EV  VL+A++++DPSI   L  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FTSRVWNDKKITA-HHAIIPTRQPFEIAKLNAKELKVYSLIRLHYLAQFMPLQESDVTDA  419
              SR WNDKKIT+ HH+IIPT +P +++ ++ KE KVY LIR H+LAQF+P +E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGNQLFRTRGRVMIHAGWKSLFSGQLSEEGEEDKESAAQLPALEQGSVCSVTGADVK  479
            TF+    L+++ G+ ++ +GWK LFS+   EE+++    +  LP L+ G+ C V + ++K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  DNMTKAPPHHTEGTLIAAMKNAASLVTDPQLKKVLRDNAGLGTEATRSGVLETLFKRGFL  539
               T +P   TEGTLI AMK  A LV DP+L + L++ +G+GTEATR+G ++ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  EKKGKFIQATQMARELIAALPETLTSPGMTALWEQALDDIAQGKSGLSDFMQKQTQWTRH  599
             KKG  ++AT+ A  LI A+P +++ PG TA+WEQAL  I QG   L DF+ +Q+ W  +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LIEKGRVAAFKITVPVGPSCPKCGGPTQQRKNKEDKFWGCMKFPDCKGIV--GETNRKT  656
            L+E+ + +++ I VP GP CP C++ T QRK   + FW+C ++P+CKG V  G  ++K+
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVNIGTGKKKS  658

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  587 bits (2218),  Expect = 5e-169, Method: Compositional matrix adjust.
 Identities = 336/650 (52%), Positives = 478/650 (74%), Gaps = 4/650 (0%)

Query  1    MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPEVYGEQYGKPW  60
            MRL LCEKPSQG+DIA  LGA  RG+G ++G GV+VTW+ GHLLETA P+ YGE+  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATDADREGEVIARELLDYCKF  120
              D LP+LP +WK++VK+ + +QF ++++LLKQ  E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGR  180
            +G + RLW+SAL++ASIR AL  +  +S T +LY ++++RSRADWLIGMN++RLFTLLGR
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQY  240
            +AG   VLSVGRVQTPTL +VV RDR+I NF++KP+  V   +   G  F +KWV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP  300
             DEE RC++ + AA  +   + + +A+ ++ +  R K++APL+F LSTLQ+ CS   GM 
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPVVASLDTQ  360
             Q  LD+AQ LYETHK TTYPRTDCGYLP SM +E+P VL A+  TDP++   +  +D +
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEA  419
              SR WNDKKIT+ HHGIIPT + ++LS +S+ ER+VY+L+R H+LAQFLP  E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTGETT--LPAMQAGQVCQVQGAEQK  477
            TF+  + L+++ G+ +V PGWK LF+  SE++ D++G  +  LP +Q G  C+VQ+ + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  VLQTKPPAPYNDGTLIAAMTNAAAFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFL  537
             L+T PP +Y +GTLI AM   A +V D+ L + LKE +GIGTEATRAG I+ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  VREKKTLKSTPLGRNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQ  597
            ++   +L++T  + +L+D +P ++++PG TA+WEQ L  +  G ++LDDF+A+QS W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVAQGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIV  647
            LV Q ++  L+++ P +P CP+C++KT QR+G SG+FW+C +YPECKG V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  587 bits (2218),  Expect = 5e-169, Method: Compositional matrix adjust.
 Identities = 336/650 (52%), Positives = 478/650 (74%), Gaps = 4/650 (0%)

Query  1    MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPEVYGEQYGKPW  60
            MRL LCEKPSQG+DIA  LGA  RG+G ++G GV+VTW+ GHLLETA P+ YGE+  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATDADREGEVIARELLDYCKF  120
              D LP+LP +WK++VK+ + +QF ++++LLKQ  E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGR  180
            +G + RLW+SAL++ASIR AL  +  +S T +LY ++++RSRADWLIGMN++RLFTLLGR
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQY  240
            +AG   VLSVGRVQTPTL +VV RDR+I NF++KP+  V   +   G  F +KWV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP  300
             DEE RC++ + AA  +   + + +A+ ++ +  R K++APL+F LSTLQ+ CS   GM 
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPVVASLDTQ  360
             Q  LD+AQ LYETHK TTYPRTDCGYLP SM +E+P VL A+  TDP++   +  +D +
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEA  419
              SR WNDKKIT+ HHGIIPT + ++LS +S+ ER+VY+L+R H+LAQFLP  E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTGETT--LPAMQAGQVCQVQGAEQK  477
            TF+  + L+++ G+ +V PGWK LF+  SE++ D++G  +  LP +Q G  C+VQ+ + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  VLQTKPPAPYNDGTLIAAMTNAAAFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFL  537
             L+T PP +Y +GTLI AM   A +V D+ L + LKE +GIGTEATRAG I+ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  VREKKTLKSTPLGRNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQ  597
            ++   +L++T  + +L+D +P ++++PG TA+WEQ L  +  G ++LDDF+A+QS W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVAQGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIV  647
            LV Q ++  L+++ P +P CP+C++KT QR+G SG+FW+C +YPECKG V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  587 bits (2218),  Expect = 5e-169, Method: Compositional matrix adjust.
 Identities = 336/650 (52%), Positives = 478/650 (74%), Gaps = 4/650 (0%)

Query  1    MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPEVYGEQYGKPW  60
            MRL LCEKPSQG+DIA  LGA  RG+G ++G GV+VTW+ GHLLETA P+ YGE+  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATDADREGEVIARELLDYCKF  120
              D LP+LP +WK++VK+ + +QF ++++LLKQ  E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGR  180
            +G + RLW+SAL++ASIR AL  +  +S T +LY ++++RSRADWLIGMN++RLFTLLGR
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQY  240
            +AG   VLSVGRVQTPTL +VV RDR+I NF++KP+  V   +   G  F +KWV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP  300
             DEE RC++ + AA  +   + + +A+ ++ +  R K++APL+F LSTLQ+ CS   GM 
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPVVASLDTQ  360
             Q  LD+AQ LYETHK TTYPRTDCGYLP SM +E+P VL A+  TDP++   +  +D +
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEA  419
              SR WNDKKIT+ HHGIIPT + ++LS +S+ ER+VY+L+R H+LAQFLP  E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTGETT--LPAMQAGQVCQVQGAEQK  477
            TF+  + L+++ G+ +V PGWK LF+  SE++ D++G  +  LP +Q G  C+VQ+ + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  VLQTKPPAPYNDGTLIAAMTNAAAFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFL  537
             L+T PP +Y +GTLI AM   A +V D+ L + LKE +GIGTEATRAG I+ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  VREKKTLKSTPLGRNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQ  597
            ++   +L++T  + +L+D +P ++++PG TA+WEQ L  +  G ++LDDF+A+QS W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVAQGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIV  647
            LV Q ++  L+++ P +P CP+C++KT QR+G SG+FW+C +YPECKG V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  587 bits (2218),  Expect = 5e-169, Method: Compositional matrix adjust.
 Identities = 336/650 (52%), Positives = 478/650 (74%), Gaps = 4/650 (0%)

Query  1    MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPEVYGEQYGKPW  60
            MRL LCEKPSQG+DIA  LGA  RG+G ++G GV+VTW+ GHLLETA P+ YGE+  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATDADREGEVIARELLDYCKF  120
              D LP+LP +WK++VK+ + +QF ++++LLKQ  E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGR  180
            +G + RLW+SAL++ASIR AL  +  +S T +LY ++++RSRADWLIGMN++RLFTLLGR
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQY  240
            +AG   VLSVGRVQTPTL +VV RDR+I NF++KP+  V   +   G  F +KWV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP  300
             DEE RC++ + AA  +   + + +A+ ++ +  R K++APL+F LSTLQ+ CS   GM 
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPVVASLDTQ  360
             Q  LD+AQ LYETHK TTYPRTDCGYLP SM +E+P VL A+  TDP++   +  +D +
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEA  419
              SR WNDKKIT+ HHGIIPT + ++LS +S+ ER+VY+L+R H+LAQFLP  E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTGETT--LPAMQAGQVCQVQGAEQK  477
            TF+  + L+++ G+ +V PGWK LF+  SE++ D++G  +  LP +Q G  C+VQ+ + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  VLQTKPPAPYNDGTLIAAMTNAAAFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFL  537
             L+T PP +Y +GTLI AM   A +V D+ L + LKE +GIGTEATRAG I+ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  VREKKTLKSTPLGRNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQ  597
            ++   +L++T  + +L+D +P ++++PG TA+WEQ L  +  G ++LDDF+A+QS W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVAQGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIV  647
            LV Q ++  L+++ P +P CP+C++KT QR+G SG+FW+C +YPECKG V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  586 bits (2215),  Expect = 8e-169, Method: Compositional matrix adjust.
 Identities = 335/650 (52%), Positives = 477/650 (74%), Gaps = 4/650 (0%)

Query  1    MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPEVYGEQYGKPW  60
            MRL LCEKPSQG+DIA  LGA  RG+G ++G GV+VTW+ GHLLETA P+ YGE+  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATDADREGEVIARELLDYCKF  120
              D LP+LP +WK++VK+ + +QF ++++LLKQ  E+VIATDADREGE+IAREL++YC +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  QGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGR  180
            +G + RLW+SAL++ASIR AL  +  +S T +LY ++++RSRADWLIGMN++RLFTLLGR
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQY  240
            +AG   VLSVGRVQTPTL +VV RDR+I NF++KP+  V   +   G  F +KWV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP  300
             DEE RC++ + AA  +   + + +A+ ++ +  R K++APL+F LSTLQ+ CS   GM 
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPVVASLDTQ  360
             Q  LD+AQ LYETHK TTYPRTDCGYLP SM +E+P VL A+  TDP++   +  +D +
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEV  419
              SR WNDKKIT+ HHGIIPT + ++LS +S+ ER+VY+L+R H+LAQFLP  E D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTGETT--LPAMQAGQVCQVQGAEQK  477
            TF+  + L+++ G+ +V PGWK LF+  SE++ D++G  +  LP +Q G  C+VQ+ + K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  478  VLQTKPPAPYNDGTLIAAMTNAAAFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFL  537
             L+T PP +Y +GTLI AM   A +V D+ L + LKE +GIGTEATRAG I+ L+ RG L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  538  VREKKTLKSTPLGRNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQ  597
            ++   +L++T  + +L+D +P ++++PG TA+WEQ L  +  G ++LDDF+A+QS W+++
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  598  LVAQGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIV  647
            LV Q ++  L+++ P +P CP+C++KT QR+G SG+FW+C +YPECKG V
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTV  649

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  581 bits (2196),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 354/656 (54%), Positives = 475/656 (73%), Gaps = 5/656 (0%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPTQWKMTVKKETADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+P++WK+ VK  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRATLQKGGIAFPASWVPAANY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L  +G +F A WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQLCQQTGHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+TLQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQALSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTQSGSVARLDRT  360
             +++L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP+ + ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQFLPLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEVVAGWKVLFQHDVSEAKEESTDTDDVRLPALVKGETVAVAGAEL  479
            TF+  + L+++ GK  V++GWKVLF     E  ++S +  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVEKGKAQAVKFtappsppcptcsGTMRRRAGKKGSGAFWGCSNYPTCQGIINID  655
            +LVE+ K+ ++ +  P +P CP CS+   +R G  +SG FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKG--SSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  581 bits (2194),  Expect = 4e-167, Method: Compositional matrix adjust.
 Identities = 349/653 (54%), Positives = 472/653 (73%), Gaps = 4/653 (0%)

Query  1    MQLYLCEKPSQARDIARVLGLSGRGEGCIEGDTVTVTWAVGHLLELAAPEAYGEQFGVPW  60
            M+LYLCEKPSQ++DIA VLG   RG+GCI G+ V+VTW++GHLLE A+P+AYGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLK-NW  59

Query  61   RMESLPVLPEKWQMTVKPQTKSQFTVISRLLKRASEVVIATDADREGEVIARELLTYCRY  120
             +++LP+LP  W++ VKP+T SQF ++ +LLK+A+E+VIATDADREGE+IAREL+ YC Y
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  RGPVRRLWLSALDEASVREALANILPGEQTARLYDAGLARGQADWLIGMNLTRLYTLKAR  180
            RGP++RLWLSAL+EAS+R+AL  +  G +T  LY ++LAR++ADWLIGMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  VSGIPDVLSVGRVQTPTLAMVVRRDQEIAGFVPRPWWQVFVGLEKDGIRFRAVWVAAEQY  240
             +G  +VLSVGRVQTPTL +VV RD++I+ F+P+P W V V L   G  F A WVA E  
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCVNVQAARAVLQLCQQTPSAVVHEVTRKREKTPAPLCFSLGTLQEACSRKFGMG  300
             DEE RC++  AA A L   + + +A    V  KR K PAPL F L+TLQE CS KFGMG
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  AQTVLNIAQSLYETHKATTYPRTDCGYLPESMQQESREVLAAMARSDPALTPVLAQLDPG  360
             Q  L++AQSLYETHKATTYPRTDCGYLPESM +E   VL A+ R+DP++   L  +DP 
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHAIIPTRQVFDIRALSEDELKVYLLIRQHYLAQFLPLQESDITDA  419
              SR WNDKKIT+ HH+IIPT +  ++ A+SE E KVY LIR H+LAQFLP +E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TLTLGGQRFRARGKVNVVTGWRGLFSgeaaedaegedeQTTEMALPALERGEHCRISGSE  479
            T+   +  ++A GK  V+ GW+ LFS+ + E+A++ + ++    LP L+ G +C + + +
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQ--ILPVLQIGTRCDVQDLH  477

Query  480  LKGRMTSPPAPFTEGTLIAAMKNAASQVSDPKLKKVLRENAGLGTEATRAGVLEVLFARQ  539
            LK+  T PP ++TEGTLI AMK  A  V DP+L + L+E +G+GTEATRAG ++ L+ R 
Sbjct  478  LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG  537

Query  540  YLEKSGKHIRSTQRGRELTAALPEALTSPGMTALWEQALDDIAQGRMSLDTFMGRQQQWV  599
             L K G  +R+T+ +  L  A+P A++ PG TA+WEQAL  I QG ++LD F++RQ  W+
Sbjct  538  SLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWI  597

Query  600  RHLVSSGREQPFSMTVPVMPPCPLCQGPTRQRKGKHGLFRSCQRYPECKGVVN  652
             +LV   +   +S+ VP  P CPLC + T QRKG  G+F++C RYPECKG VN
Sbjct  598  TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGTVN  650

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  575 bits (2171),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 333/651 (52%), Positives = 484/651 (75%), Gaps = 8/651 (1%)

Query  1    MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGHLVEQYQPEDYDEVWKR  60
            M+L++CEKPSQ++D+A+VLGA ++GDG    +++++ VTWG+GHL+E   P+ Y+E  K 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDG--CIKGNGVAVTWGIGHLLETAPPDAYGEHLKN  58

Query  61   WAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIATDADREGEMIARELLDLAG  120
            W+++TLPI+PA+WK+  K  +  Q+++V  L+K+A+ +VIATDADREGEMIAREL++  G
Sbjct  59   WSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118

Query  121  YRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRSRSDWLIGMNFSRLFTLMA  180
            YRG IQR WLSAL++ASIR+AL+T+K G ET +LY ++++RSR+DWLIGMNFSRLFTL++
Sbjct  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178

Query  181  QAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAHYSLAVQLATASDETFVAGLSIP  240
            +  GY+G  LSVGRVQ+PTL LVV+RDR+I+NF+PK+  S+ VQL TA+ ++F+A   ++
Sbjct  179  RQAGYTG-VLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKW-VA  235

Query  241  EQYL-DESGLCLDSRVIQQAEAQIKQVGIAKVITVETKREKKAPPLLYALSDLQGECNRL  299
            ++YL DE G CLD      A A +K    A  ++V+TKR K ++PL + LS LQ  C+  
Sbjct  236  DEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295

Query  300  FGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPESQLTEVPMVIRSLVAADSELQTLLPR  359
            FG G Q+ LD+AQSLYE HK TTYPRTDCGYLPES + EVPMV+ +L  +D+ +   L  
Sbjct  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355

Query  360  LNLQQKSRAWDDKKITA-HHGIIPTIKKADLSKLSEEEMKVYDLIRRRYLAQFLPHLETD  418
            ++ +Q+SRAW+DKKIT+ HHGIIPT+  A+LS +SE E KVY+LIR ++LAQFLP  E D
Sbjct  356  IDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYD  415

Query  419  KTIATLQSSGHTLIARGNVIVSQGWRILFGKNADEDVGSDDEK-QGLPALTANQQCRVTH  477
            +T+AT++ ++  L A G+ IV  GW++LF+ +++E+ +  + + Q LP L    +C V +
Sbjct  416  RTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQD  475

Query  478  SEVRTLQTKPPAHYTEGTLLEAMKNAARFVTDPRLKQRLRETEGLGTEATRAGLIQGLID  537
             ++++L+T PP  YTEGTL+ AMK  A++V DPRL Q+L+ET G+GTEATRAG IQGLID
Sbjct  476  LHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLID  535

Query  538  KGFLIKKKKSLMASAEAIALIDSLPDLLKNPGLTALWEQALNQIAEGSMTLDDFMQRQET  597
            +G LIKK  +L A+  A++LID++P  + +PG TA+WEQAL  I +G++TLDDF+ RQ +
Sbjct  536  RGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSS  595

Query  598  FVRQLIGNCMQQGMSLGNIEIRKCPECGKPMRKINHAKGTFWGCTGYPDCQ  648
             + +L+ +     +S+   E  KCP C+    + + + G FW+C+ YP+C+
Sbjct  596  WITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECK  646

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  575 bits (2171),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 333/651 (52%), Positives = 484/651 (75%), Gaps = 8/651 (1%)

Query  1    MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGHLVEQYQPEDYDEVWKR  60
            M+L++CEKPSQ++D+A+VLGA ++GDG    +++++ VTWG+GHL+E   P+ Y+E  K 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDG--CIKGNGVAVTWGIGHLLETAPPDAYGEHLKN  58

Query  61   WAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIATDADREGEMIARELLDLAG  120
            W+++TLPI+PA+WK+  K  +  Q+++V  L+K+A+ +VIATDADREGEMIAREL++  G
Sbjct  59   WSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118

Query  121  YRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRSRSDWLIGMNFSRLFTLMA  180
            YRG IQR WLSAL++ASIR+AL+T+K G ET +LY ++++RSR+DWLIGMNFSRLFTL++
Sbjct  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178

Query  181  QAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAHYSLAVQLATASDETFVAGLSIP  240
            +  GY+G  LSVGRVQ+PTL LVV+RDR+I+NF+PK+  S+ VQL TA+ ++F+A   ++
Sbjct  179  RQAGYTG-VLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKW-VA  235

Query  241  EQYL-DESGLCLDSRVIQQAEAQIKQVGIAKVITVETKREKKAPPLLYALSDLQGECNRL  299
            ++YL DE G CLD      A A +K    A  ++V+TKR K ++PL + LS LQ  C+  
Sbjct  236  DEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295

Query  300  FGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPESQLTEVPMVIRSLVAADSELQTLLPR  359
            FG G Q+ LD+AQSLYE HK TTYPRTDCGYLPES + EVPMV+ +L  +D+ +   L  
Sbjct  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355

Query  360  LNLQQKSRAWDDKKITA-HHGIIPTIKKADLSKLSEEEMKVYDLIRRRYLAQFLPHLETD  418
            ++ +Q+SRAW+DKKIT+ HHGIIPT+  A+LS +SE E KVY+LIR ++LAQFLP  E D
Sbjct  356  IDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYD  415

Query  419  KTIATLQSSGHTLIARGNVIVSQGWRILFGKNADEDVGSDDEK-QGLPALTANQQCRVTH  477
            +T+AT++ ++  L A G+ IV  GW++LF+ +++E+ +  + + Q LP L    +C V +
Sbjct  416  RTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQD  475

Query  478  SEVRTLQTKPPAHYTEGTLLEAMKNAARFVTDPRLKQRLRETEGLGTEATRAGLIQGLID  537
             ++++L+T PP  YTEGTL+ AMK  A++V DPRL Q+L+ET G+GTEATRAG IQGLID
Sbjct  476  LHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLID  535

Query  538  KGFLIKKKKSLMASAEAIALIDSLPDLLKNPGLTALWEQALNQIAEGSMTLDDFMQRQET  597
            +G LIKK  +L A+  A++LID++P  + +PG TA+WEQAL  I +G++TLDDF+ RQ +
Sbjct  536  RGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSS  595

Query  598  FVRQLIGNCMQQGMSLGNIEIRKCPECGKPMRKINHAKGTFWGCTGYPDCQ  648
             + +L+ +     +S+   E  KCP C+    + + + G FW+C+ YP+C+
Sbjct  596  WITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECK  646

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  575 bits (2171),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 333/651 (52%), Positives = 484/651 (75%), Gaps = 8/651 (1%)

Query  1    MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGHLVEQYQPEDYDEVWKR  60
            M+L++CEKPSQ++D+A+VLGA ++GDG    +++++ VTWG+GHL+E   P+ Y+E  K 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDG--CIKGNGVAVTWGIGHLLETAPPDAYGEHLKN  58

Query  61   WAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIATDADREGEMIARELLDLAG  120
            W+++TLPI+PA+WK+  K  +  Q+++V  L+K+A+ +VIATDADREGEMIAREL++  G
Sbjct  59   WSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118

Query  121  YRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRSRSDWLIGMNFSRLFTLMA  180
            YRG IQR WLSAL++ASIR+AL+T+K G ET +LY ++++RSR+DWLIGMNFSRLFTL++
Sbjct  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178

Query  181  QAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAHYSLAVQLATASDETFVAGLSIP  240
            +  GY+G  LSVGRVQ+PTL LVV+RDR+I+NF+PK+  S+ VQL TA+ ++F+A   ++
Sbjct  179  RQAGYTG-VLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKW-VA  235

Query  241  EQYL-DESGLCLDSRVIQQAEAQIKQVGIAKVITVETKREKKAPPLLYALSDLQGECNRL  299
            ++YL DE G CLD      A A +K    A  ++V+TKR K ++PL + LS LQ  C+  
Sbjct  236  DEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295

Query  300  FGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPESQLTEVPMVIRSLVAADSELQTLLPR  359
            FG G Q+ LD+AQSLYE HK TTYPRTDCGYLPES + EVPMV+ +L  +D+ +   L  
Sbjct  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355

Query  360  LNLQQKSRAWDDKKITA-HHGIIPTIKKADLSKLSEEEMKVYDLIRRRYLAQFLPHLETD  418
            ++ +Q+SRAW+DKKIT+ HHGIIPT+  A+LS +SE E KVY+LIR ++LAQFLP  E D
Sbjct  356  IDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYD  415

Query  419  KTIATLQSSGHTLIARGNVIVSQGWRILFGKNADEDVGSDDEK-QGLPALTANQQCRVTH  477
            +T+AT++ ++  L A G+ IV  GW++LF+ +++E+ +  + + Q LP L    +C V +
Sbjct  416  RTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQD  475

Query  478  SEVRTLQTKPPAHYTEGTLLEAMKNAARFVTDPRLKQRLRETEGLGTEATRAGLIQGLID  537
             ++++L+T PP  YTEGTL+ AMK  A++V DPRL Q+L+ET G+GTEATRAG IQGLID
Sbjct  476  LHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLID  535

Query  538  KGFLIKKKKSLMASAEAIALIDSLPDLLKNPGLTALWEQALNQIAEGSMTLDDFMQRQET  597
            +G LIKK  +L A+  A++LID++P  + +PG TA+WEQAL  I +G++TLDDF+ RQ +
Sbjct  536  RGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSS  595

Query  598  FVRQLIGNCMQQGMSLGNIEIRKCPECGKPMRKINHAKGTFWGCTGYPDCQ  648
             + +L+ +     +S+   E  KCP C+    + + + G FW+C+ YP+C+
Sbjct  596  WITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECK  646

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  575 bits (2171),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 333/651 (52%), Positives = 484/651 (75%), Gaps = 8/651 (1%)

Query  1    MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGHLVEQYQPEDYDEVWKR  60
            M+L++CEKPSQ++D+A+VLGA ++GDG    +++++ VTWG+GHL+E   P+ Y+E  K 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDG--CIKGNGVAVTWGIGHLLETAPPDAYGEHLKN  58

Query  61   WAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIATDADREGEMIARELLDLAG  120
            W+++TLPI+PA+WK+  K  +  Q+++V  L+K+A+ +VIATDADREGEMIAREL++  G
Sbjct  59   WSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118

Query  121  YRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRSRSDWLIGMNFSRLFTLMA  180
            YRG IQR WLSAL++ASIR+AL+T+K G ET +LY ++++RSR+DWLIGMNFSRLFTL++
Sbjct  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178

Query  181  QAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAHYSLAVQLATASDETFVAGLSIP  240
            +  GY+G  LSVGRVQ+PTL LVV+RDR+I+NF+PK+  S+ VQL TA+ ++F+A   ++
Sbjct  179  RQAGYTG-VLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKW-VA  235

Query  241  EQYL-DESGLCLDSRVIQQAEAQIKQVGIAKVITVETKREKKAPPLLYALSDLQGECNRL  299
            ++YL DE G CLD      A A +K    A  ++V+TKR K ++PL + LS LQ  C+  
Sbjct  236  DEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295

Query  300  FGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPESQLTEVPMVIRSLVAADSELQTLLPR  359
            FG G Q+ LD+AQSLYE HK TTYPRTDCGYLPES + EVPMV+ +L  +D+ +   L  
Sbjct  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355

Query  360  LNLQQKSRAWDDKKITA-HHGIIPTIKKADLSKLSEEEMKVYDLIRRRYLAQFLPHLETD  418
            ++ +Q+SRAW+DKKIT+ HHGIIPT+  A+LS +SE E KVY+LIR ++LAQFLP  E D
Sbjct  356  IDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYD  415

Query  419  KTIATLQSSGHTLIARGNVIVSQGWRILFGKNADEDVGSDDEK-QGLPALTANQQCRVTH  477
            +T+AT++ ++  L A G+ IV  GW++LF+ +++E+ +  + + Q LP L    +C V +
Sbjct  416  RTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQD  475

Query  478  SEVRTLQTKPPAHYTEGTLLEAMKNAARFVTDPRLKQRLRETEGLGTEATRAGLIQGLID  537
             ++++L+T PP  YTEGTL+ AMK  A++V DPRL Q+L+ET G+GTEATRAG IQGLID
Sbjct  476  LHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLID  535

Query  538  KGFLIKKKKSLMASAEAIALIDSLPDLLKNPGLTALWEQALNQIAEGSMTLDDFMQRQET  597
            +G LIKK  +L A+  A++LID++P  + +PG TA+WEQAL  I +G++TLDDF+ RQ +
Sbjct  536  RGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSS  595

Query  598  FVRQLIGNCMQQGMSLGNIEIRKCPECGKPMRKINHAKGTFWGCTGYPDCQ  648
             + +L+ +     +S+   E  KCP C+    + + + G FW+C+ YP+C+
Sbjct  596  WITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECK  646

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  575 bits (2171),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 333/651 (52%), Positives = 484/651 (75%), Gaps = 8/651 (1%)

Query  1    MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGHLVEQYQPEDYDEVWKR  60
            M+L++CEKPSQ++D+A+VLGA ++GDG    +++++ VTWG+GHL+E   P+ Y+E  K 
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDG--CIKGNGVAVTWGIGHLLETAPPDAYGEHLKN  58

Query  61   WAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIATDADREGEMIARELLDLAG  120
            W+++TLPI+PA+WK+  K  +  Q+++V  L+K+A+ +VIATDADREGEMIAREL++  G
Sbjct  59   WSLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118

Query  121  YRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMGRSRSDWLIGMNFSRLFTLMA  180
            YRG IQR WLSAL++ASIR+AL+T+K G ET +LY ++++RSR+DWLIGMNFSRLFTL++
Sbjct  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178

Query  181  QAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAHYSLAVQLATASDETFVAGLSIP  240
            +  GY+G  LSVGRVQ+PTL LVV+RDR+I+NF+PK+  S+ VQL TA+ ++F+A   ++
Sbjct  179  RQAGYTG-VLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAG-QSFLAKW-VA  235

Query  241  EQYL-DESGLCLDSRVIQQAEAQIKQVGIAKVITVETKREKKAPPLLYALSDLQGECNRL  299
            ++YL DE G CLD      A A +K    A  ++V+TKR K ++PL + LS LQ  C+  
Sbjct  236  DEYLVDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295

Query  300  FGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPESQLTEVPMVIRSLVAADSELQTLLPR  359
            FG G Q+ LD+AQSLYE HK TTYPRTDCGYLPES + EVPMV+ +L  +D+ +   L  
Sbjct  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355

Query  360  LNLQQKSRAWDDKKITA-HHGIIPTIKKADLSKLSEEEMKVYDLIRRRYLAQFLPHLETD  418
            ++ +Q+SRAW+DKKIT+ HHGIIPT+  A+LS +SE E KVY+LIR ++LAQFLP  E D
Sbjct  356  IDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYD  415

Query  419  KTIATLQSSGHTLIARGNVIVSQGWRILFGKNADEDVGSDDEK-QGLPALTANQQCRVTH  477
            +T+AT++ ++  L A G+ IV  GW++LF+ +++E+ +  + + Q LP L    +C V +
Sbjct  416  RTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQD  475

Query  478  SEVRTLQTKPPAHYTEGTLLEAMKNAARFVTDPRLKQRLRETEGLGTEATRAGLIQGLID  537
             ++++L+T PP  YTEGTL+ AMK  A++V DPRL Q+L+ET G+GTEATRAG IQGLID
Sbjct  476  LHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLID  535

Query  538  KGFLIKKKKSLMASAEAIALIDSLPDLLKNPGLTALWEQALNQIAEGSMTLDDFMQRQET  597
            +G LIKK  +L A+  A++LID++P  + +PG TA+WEQAL  I +G++TLDDF+ RQ +
Sbjct  536  RGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSS  595

Query  598  FVRQLIGNCMQQGMSLGNIEIRKCPECGKPMRKINHAKGTFWGCTGYPDCQ  648
             + +L+ +     +S+   E  KCP C+    + + + G FW+C+ YP+C+
Sbjct  596  WITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECK  646

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  573 bits (2163),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 349/658 (54%), Positives = 469/658 (72%), Gaps = 9/658 (1%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+P++WK+ +K  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIAFPANWVPAANY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L  +G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+TLQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVARLDRA  360
             ++ L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP++  ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQFLPLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVAVAGAEL  479
            TF+  + L+++ GK   ++GWKVLF     E  +++++  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVE--KGKTQAVKFtappsppcptcsGSMrrragkkgggaFWGCSNYPTCQGVINID  655
            +LVE  KG T ++K    P  P  +   S      K ++G FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTS----QRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  573 bits (2163),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 349/658 (54%), Positives = 469/658 (72%), Gaps = 9/658 (1%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+P++WK+ +K  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIAFPANWVPAANY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L  +G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+TLQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVARLDRA  360
             ++ L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP++  ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQFLPLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVAVAGAEL  479
            TF+  + L+++ GK   ++GWKVLF     E  +++++  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVE--KGKTQAVKFtappsppcptcsGSMrrragkkgggaFWGCSNYPTCQGVINID  655
            +LVE  KG T ++K    P  P  +   S      K ++G FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTS----QRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  573 bits (2163),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 349/658 (54%), Positives = 469/658 (72%), Gaps = 9/658 (1%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+P++WK+ +K  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIAFPANWVPAANY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L  +G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+TLQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVARLDRA  360
             ++ L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP++  ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQFLPLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVAVAGAEL  479
            TF+  + L+++ GK   ++GWKVLF     E  +++++  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVE--KGKTQAVKFtappsppcptcsGSMrrragkkgggaFWGCSNYPTCQGVINID  655
            +LVE  KG T ++K    P  P  +   S      K ++G FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTS----QRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  571 bits (2156),  Expect = 4e-164, Method: Compositional matrix adjust.
 Identities = 348/658 (53%), Positives = 469/658 (72%), Gaps = 9/658 (1%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPTQWKMAVKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+P++WK+ VK  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDITNFISKPYWQVRATLQKGGITFPANWVPAANY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L  +G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+TLQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVARLDRA  360
             ++ L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP++  ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQYLSLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQ+L+ HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVAVAGAEL  479
            TF+  + L+++ GK   ++GWKVLF     E  +++++  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILDTLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVE--KGKTQAVKFtappsppcptcsGSMrrragkkgggaFWGCSNYPTCQGVINID  655
            +LVE  KG T ++K    P  P  +   S      K ++G FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAKTS----QRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  570 bits (2151),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 330/627 (53%), Positives = 454/627 (73%), Gaps = 2/627 (0%)

Query  1    MRLFICEKPSQGRDLAGVLGATRRGDGFLTGSGVTVTWAVGHLLETAPPEAYGQQYGKPW  60
            MRL++CEKPSQG+D+A+VLGA  RGDG + G+GV+VTW++GHLLETAPP+AYG++  K W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   SLSALPILPAPWRVVVKKETQDQFKVIERLLRQVDDVVIATDADREGEVIARELLEYCRW  120
            SL +LPILPA W+V+VK  T  QFK++ +LL+Q  ++VIATDADREGE+IAREL+EYC  
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  EGPVQRLWLSALDELSIRAALQDLRPGQATLGMYHAGLGRARADWLIGMNLSRLYTLRAA  180
             GP+QRLWLSAL+E SIR AL+ ++ G  T  +Y ++L+R+RADWLIGMN+SRL+TL + 
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  ESGFDGVVSVGRVQTPTLALVVRRDREIAAFVPKPFWQVKALISAGDLTFPAQWVPAKVY  240
            ++G+ GV+SVGRVQTPTL LVV RDR+I+ F+PKPFW V   + +++ +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  TDEEKRCVHQNIAQQVAQLCRQTGHAVVTECDTKREKAAAPLAFSLGSLQQACGRLWDMS  300
             DEE RC++Q  A       + +  A     DTKR K +APL+F L++LQ+ C+   +M+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  PQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEISGVLDAIGRTDPECAPVLARLDRT  360
             Q+ LD AQSLYE HKATTYPRTDCGYLPESM +E++ VLDA+ RTDP  +  L  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTRNAFQLSALTETERNVYMLIRRNYLAQFLPLHESDFTRL  419
              SR WNDKKIT+ HHGIIPT ++ +LSA++E ER+VY LIR ++LAQFLP HE D T  
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  QFDTGGQLFRATGRTEVIKGWKVLFENAGDNEVDDGDEADIALPPLAQNDRCAVTGAEVV  479
             F+  + L++A G+  VI GWKVLF  ++++E DD++     LP L    RC V + ++ 
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  QLMTRPPAHYTFATLIGAMMNAAAFVTDVALRKVLKDNAGLGTEATRAGIVEQLLNRHFI  539
             L T PP  YT +TLI AM   A +V D  L + LK+ +G+GTEATRAG ++ L++R  +
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  VRKGSKIMATELGADVIDALPPQLTEPGMTALWEQALDEVAAGRMSLDDFLQRQTGWTRN  599
            ++KGS + ATE +  +IDA+PP +++PG TA+WEQAL  +  G ++LDDF+ RQ++W   
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVSQGTQQQVRIRVPPTPACPLCGGKP  626
            LV Q     + I+VP  P CPLC++K 
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKT  626

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  569 bits (2148),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 349/656 (54%), Positives = 471/656 (72%), Gaps = 5/656 (0%)

Query  1    MQLYLCEKPSQGKDIGAILGATQRKQGYLVGAGVIVTWAIGHLLEQAQPETYGEQFGSPW  60
            M+LYLCEKPSQGKDI+A+LGA  R +G + G GV VTW+IGHLLE A P++YGE++   W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RESVLPIVPAQWKMAVKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCHF  120
                LPI+PA+WK+ VK  TA QF +++ LLKQ   +VIATDADREGE+IAREL+E C +
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  TGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKAR  180
             GP+QRLWLSAL+EASIR+AL     G  T PLY ++LARSRADW+ GMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  EQGYGEVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRTMLQKDGIAFPANWVPAVNY  240
            + GY  VLS+GRVQTPTL LVV+RDRDI+NFI+KP+W V   L   G +F A+WV+    
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCIQQNVAQAVVQLCQQTANAVVLDVGTERKKESAPLAFDLGILQQACSRKWGMS  300
             DEE RC++Q  A A +   + +  A  + V+T R K++APL+FDL+ LQ+ CS K GM+
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTQSESVARLDRT  360
             ++ L +AQSLYETHKATTYPRTDCGYLP SM +EV+ VL A+ RTDP+ + ++  +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRIWNDKKITA-HHGIIPTKQPFDLSKLSADELKVYQLIRQHYLAQFLPLHEVDVTEA  419
              SR WNDKKIT+ HHGIIPT +P +LS +S  E KVY+LIR H+LAQFLP HE D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  TFNIGGQLFRTRGKVEAVAGWKALFQHDASEAKEEPADTDDVRLPALVKGEAVSVAGAEL  479
            TF+  + L+++ GK   ++GWK LF   + E  +++++  ++ LP L  G    V + +L
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQI-LPVLQIGTRCDVQDLHL  478

Query  480  KTLQTKPPGHFTDGTLIAAMKNAAAFVSDPQLKKVLKENAGLGTEATRAGILETLFKRGY  539
            K+L+T PP  +T+GTLI AMK  A +V DP+L + LKE +G+GTEATRAG ++ L+ RG 
Sbjct  479  KSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGS  538

Query  540  LEKKGKFLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTFMSRQAQWTG  599
            L KKG  L +T  A  LIDA+P A+++PG TA+WEQAL  I QG +TLD F++RQ+ W  
Sbjct  539  LIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWIT  598

Query  600  HLVEKGKAQAVKFtappsppcptcsGTMrrragkkgggaFWGCSNYPTCQGIINID  655
            +LVE+ K+ ++ +  P +P CP CS+       K ++G FW+CS YP C+G +NI+
Sbjct  599  RLVEQYKGTTLSIKVPEGPKCPLCSAK--TSQRKGSSGVFWACSRYPECKGTVNIG  652

> AJ870974|60|G56|68637892|CAI36097.1|Pseudomonas_syringae_pv._phaseolicola_1302A|+|60955..62976|pph56|-|Topoisomerase 
IA
Length=673

 Score =  566 bits (2138),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 333/646 (52%), Positives = 468/646 (73%), Gaps = 2/646 (0%)

Query  1    MQLFLCEKPSQAKDIARVLGISKREQGFISGGNIVVTWAVGHLLETASPEAYGEQYGRPW  60
            M+L+LCEKPSQ+KDIA VLG   R +G I G  + VTW++GHLLETA+P+AYGE+  + W
Sbjct  1    MRLYLCEKPSQGKDIAAVLGAKTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHL-KNW  59

Query  61   RADVLPVLPEAWKMVVKEQTKSQFTVISKLLKKASEVVIATDADREGEVIARELMEYCRY  120
              D LP+LP  WK++VK +T SQF ++ +LLK+A+E+VIATDADREGE+IAREL+EYC Y
Sbjct  60   SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGY  119

Query  121  SGAVRRLWLSALDEASVKEALSSILPGEKTALLYDAGKGRSQADWLIGMNLTRLYTLKAR  180
             G+++RLWLSAL+EAS+++AL+++  G  T  LY ++ +RS+ADWLIGMN++RL+TL +R
Sbjct  120  RGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGR  179

Query  181  DSGVSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVRFRAVWVPVEQY  240
            ++G + VLSVGRVQTPTL +VV+RD +I++F+PKP W V+  +   G  F A WV+ E  
Sbjct  180  QAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYL  239

Query  241  CDEEKRCINPQAARAVGQLCQQQGRAVVLEVTQKREKTAAPLCFDLGTLQQVCSRKFGMG  300
             DEE RC++  AA A     +    A  + V  KR K +APL FDL+TLQ+VCS KFGMG
Sbjct  240  VDEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMG  299

Query  301  ANDVLAIAQSLYETHKATTYPRTDCGFLPTSMQQEIPDVLAAVAKSDPAVAPVLNQLDRK  360
             ++ L +AQSLYETHKATTYPRTDCG+LP SM +E+P VL A+ ++DP+++  L+ +D  
Sbjct  300  VQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPE  359

Query  361  FVSRVWNDKKITA-HHAIIPTRQAFDLSRLSADELKVYHLIRQHYFAQFLPLQESDVTEA  419
              SR WNDKKIT+ HH+IIPT ++ +LS +S  E KVY+LIR H++AQFLP +E D T A
Sbjct  360  QRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVA  419

Query  420  SFNIGGQLFRTRGKVGVVTGWKSLFQAekdddeedvdgdSMALPALAKGDICAVTGSEVK  479
            +F+  + L+++ GK  V+ GWK LF A  +++ +D +G S  LP L  G  C V + ++K
Sbjct  420  TFECNAVLLQAVGKRIVIPGWKVLFSASSEEEADDSGGRSQILPVLQIGTRCDVQDLHLK  479

Query  480  DMKTSPPKPFTEGTLIAAMKNAASFVSDPKLKKVLRDNAGLGTEATRAAVLETLFKRHYL  539
             +KT PPK++TEGTLI AMK  A +V DP+L + L++ +G+GTEATRA+ ++ L+ R  L
Sbjct  480  SLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSL  539

Query  540  EKKGKHIHSTQMARELIAALPETLTSPGMTALWEQALDDISQGKMSLAVFMQKQLQWTRH  599
             KKG  +++T+ A  LI A+P +++ PG TA+WEQAL  I QG ++L  F+ +Q  W  +
Sbjct  540  IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFIARQSSWITR  599

Query  600  LVEKGRQDSVKITAPVTPPCPLCKGPTrkrkgkkgDFWGCVRYPDC  645
            LVE+ +  ++ I  P  P CPLC + T +RKG  G FW+C RYP+C
Sbjct  600  LVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPEC  645