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PAthogenisity Island DataBase (PAI DB)

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Homologs of HMPREF0351_12130 gene of NC_017960_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EFAU004_02134
( YP_005355336.1 )

phage terminase

NC_017022
(Enterococcus faecium Aus0004)

0.0

100

2) HMPREF0351_12130
( YP_006376736.1 )

bacteriophage terminase large subunit

NC_017960
(Enterococcus faecium DO)

0.0

100

3) LBP_cg1998
( YP_007987675.1 )

Prophage Lp3 protein 15, terminase large subunit

NC_021224
(Lactobacillus plantarum P-8)

7e-172

4) Lp16_1956
( YP_008121772.1 )

prophage P2b protein 15, terminase large subunit

NC_021514
(Lactobacillus plantarum 16)

2e-171

5) lp_2466
( YP_004890154.1 )

prophage P2b protein 15, terminase large subunit

NC_004567
(Lactobacillus plantarum WCFS1)

2e-171

6) PECL_597
( YP_005004571.1 )

phage Terminase family protein

NC_016605
(Pediococcus claussenii ATCC BAA-344)

5e-153

7) LRI_1510
( YP_008099864.1 )

prophage P2b protein 15, terminase large subunit

NC_021494
(Lactobacillus reuteri I5007)

9e-153

8) terL
( YP_003172644.1 )

phage-related terminase large subunit

NC_013198
(Lactobacillus rhamnosus GG)

4e-135

9) LRHM_2790
( YP_005867282.1 )

phage terminase

NC_017482
(Lactobacillus rhamnosus GG)

4e-135

10) LBPG_01497
( YP_008448017.1 )

phage terminase large subunit

NC_022112
(Lactobacillus paracasei 8700:2)

1e-131

11) terL
( YP_003173762.1 )

phage-related terminase large subunit

NC_013199
(Lactobacillus rhamnosus Lc 705)

4e-131

12) terL
( YP_003173383.1 )

phage-related terminase large subunit

NC_013199
(Lactobacillus rhamnosus Lc 705)

6e-131

13) LOCK908_1089
( YP_008205588.1 )

Prophage Lp3 protein 15, terminase large subunit

NC_021725
(Lactobacillus rhamnosus LOCK908)

6e-131

14) LCAZH_1009
( YP_003788102.1 )

prophage Lp3 protein 15, terminase large subunit-like protein

NC_014334
(Lactobacillus casei Zhang)

1e-129

15) LCBD_3112
( YP_005861142.1 )

Phage terminase-like protein

NC_017474
(Lactobacillus casei BD-II)

3e-124

16) terL
( YP_001989000.1 )

phage terminase-large subunit

NC_010999
(Lactobacillus casei BL23)

3e-124

17) LC2W_3095
( YP_005858004.1 )

Phage terminase-like protein

NC_017473
(Lactobacillus casei LC2W)

3e-124

18) BN194_30300
( YP_006753096.1 )

phage terminase-like protein

NC_018641
(Lactobacillus casei W56)

3e-124

19) JDM1_0044
( YP_003061630.1 )

prophage Lp3 protein 15, terminase large subunit

NC_012984
(Lactobacillus plantarum JDM1)

2e-123

20) BaLi_c06930
( YP_008076826.1 )

phage terminase like large subunit-like protein

NC_021362
(Bacillus licheniformis 9945A)

4e-111

21) gp2
( YP_003921501.1 )

terminase large subunit

NC_014551
(Bacillus amyloliquefaciens DSM 7)

4e-110

22) gp2
( YP_005542725.1 )

terminase large subunit

NC_017188
(Bacillus amyloliquefaciens TA208)

4e-110

23) BAXH7_03144
( YP_005551112.1 )

hypothetical protein

NC_017191
(Bacillus amyloliquefaciens XH7)

4e-110

24) Lreu_0670
( YP_001271272.1 )

phage terminase

NC_009513
(Lactobacillus reuteri DSM 20016)

8e-109

25) LAR_0644
( YP_001841640.1 )

phage large terminase subunit

NC_010609
(Lactobacillus reuteri JCM 1112)

8e-109

26) LL3_03367
( YP_005547125.1 )

terminase large subunit

NC_017190
(Bacillus amyloliquefaciens LL3)

1e-107

27) TEH_18120
( YP_004887303.1 )

putative phage terminase large subunit

NC_016052
(Tetragenococcus halophilus NBRC 12172)

3e-106

28) HMPREF0538_22099
( YP_004650595.1 )

phage terminase large subunit

NC_015697
(Lactobacillus reuteri SD2112)

1e-97

29) BSNT_02825
( YP_005561092.1 )

hypothetical protein

NC_017196
(Bacillus subtilis BEST195)

7e-98

30) SpyM3_0946
( NP_664750.1 )

hypothetical protein

NC_004070
(Streptococcus pyogenes MGAS315)

1e-97

31) SPs0909
( NP_802171.1 )

hypothetical protein

NC_004606
(Streptococcus pyogenes SSI-1)

1e-97

32) SEQ_0820
( YP_002746156.1 )

phage terminase, large subunit

NC_012471
(Streptococcus equi 4047)

1e-96

33) BAMF_3089
( YP_003921685.1 )

terminase large subunit

NC_014551
(Bacillus amyloliquefaciens DSM 7)

3e-96

34) M6_Spy1011
( YP_060329.1 )

terminase large subunit

NC_006086
(Streptococcus pyogenes MGAS10394)

8e-96

35) SAOV_1931c
( YP_005737375.1 )

Terminase large subunit, phage associated

NC_017337
(Staphylococcus aureus ED133)

3e-94

36) SAAV_0855
( YP_003281778.1 )

putative phage terminase, large subunit

NC_013450
(Staphylococcus aureus ED98)

7e-94

37) MS7_2000
( YP_005758400.1 )

phage Terminase family protein

NC_017351
(Staphylococcus aureus 11819-97)

8e-92

38) SAAG_01363
( YP_008449372.1 )

phage terminase-large subunit protein

NC_022113
(Staphylococcus aureus 55/2053)

1e-91

39) BN843_20070
( YP_007869038.1 )

Phage terminase, large subunit

NC_021059
(Staphylococcus aureus M1)

1e-91

40) SAS1891
( YP_044005.1 )

terminase-large subunit

NC_002953
(Staphylococcus aureus MSSA476)

1e-91

41) MW1908
( NP_646725.1 )

hypothetical protein

NC_003923
(Staphylococcus aureus MW2)

1e-91

42) SAOUHSC_02196
( YP_500681.1 )

phage terminase large subunit

NC_007795
(Staphylococcus aureus NCTC 8325)

1e-91

• Sequence Alignments

1) EFAU004_02134 in NC_017022


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  906 bits (3432),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 564/564 (100%), Positives = 564/564 (100%), Gaps = 0/564 (0%)

Query  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60
            MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120
            DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180
            EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240
            ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300
            YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360
            DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420
            TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480
            IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480

Query  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA  540
            RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA
Sbjct  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA  540

Query  541  MDYFTTTEGAKADNEFYTSEEFSF  564
            MDYFTTTEGAKADNEFYTSEEFSF
Sbjct  541  MDYFTTTEGAKADNEFYTSEEFSF  564

2) HMPREF0351_12130 in NC_017960


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  906 bits (3432),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 564/564 (100%), Positives = 564/564 (100%), Gaps = 0/564 (0%)

Query  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60
            MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120
            DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180
            EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240
            ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300
            YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360
            DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420
            TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480
            IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480

Query  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA  540
            RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA
Sbjct  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFA  540

Query  541  MDYFTTTEGAKADNEFYTSEEFSF  564
            MDYFTTTEGAKADNEFYTSEEFSF
Sbjct  541  MDYFTTTEGAKADNEFYTSEEFSF  564

3) LBP_cg1998 in NC_021224


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  597 bits (2255),  Expect = 7e-172, Method: Compositional matrix adjust.
 Identities = 328/561 (59%), Positives = 453/561 (81%), Gaps = 1/561 (0%)

Query  1    MIEYVDQVLSGQVLAGQKIKWACERFKRDLSRSKEAIFPFYYDEDEAAQAVKFIELMPKT  60
            M +Y+++VLSG+++A +KI  ACER   DL RSK   FP+ +DE++A++A+KFIEL+P T
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGSRLTMQPFQKWIISELYGWREKTTGNRRYDRAFISMARKNGKTYLASGMAANGLLRER  120
            DG  + M  FQK I++ LYGWR K    RR++RAF SM+RKNGKTY+ASGMAAN+L+ E+
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  QPARNRQVLFVSNALKQAKLGYNMLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQAL  180
            +PA  RQVLFVSNALKQAKLGY+MLS++LR+V K SK++R ++K+ +  I +L ++S A+
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASDTSTLNGYAGTTVILDEWHEAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPM  240
            ALAS+TSTL+G+A TT ILDEWHEAK RK YNV+KSG +Q+ N+LL VIST+GL+LNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  HAEYDMLTDVLKGKTEADRYFVAIWELDDREEVYDQANWIKANPLFSEPHVKQRMTEKIQ  300
              EY +L  VLKG  +ADRYF+AIWELDD EE+ DQ +WIKANP+F   ++K+ M   IQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  ADVDLAIKQNNLIPILVKNFNMWLQASEDSYISADDWAAGKLAKVPDLHNRDAYIGIDLS  360
             DV+LA+KQNNL ++LVKNFN+W QASEDSY+ A+DW A  +    D+  +  YIG+DLS
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEP-QDITGKPVYIGVDLS  359

Query  361  KSNDLTAVSWLIPIGNGQFYCDSHSFVGTKYGLDSKIKRDGIDYRSMERAGECSITRLDS  420
            K++DLT+VSW++P++NG++YCDSHSFV+TKYGL+ K KRDG+ YR +E+AGECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  421  GVIDYDELFDYVQNLVGKYNWKVKAIAYDPYNAQTLITKFEKLSYPLFEVRQGTKTLNIP  480
            G++DYD++F+++Q+L+   +    +I YDPYNA++LI+K EK +YP++EVRQGT TLN+P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  481  TRNFRDQLYDGKIKHNGNKILAYAVNNAILKVINNGWQLDKARNSNRIDPIAALINAFVA  540
            TR FR+Q+Y+G++ HN N IL+ AVNNAILK  NNG Q++K++NSN+IDPIAALINA+V 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVF  539

Query  541  GMDYYQESEAQQHAEDYYKTA  561
            +MDY+  +E+ +  +++Y + 
Sbjct  540  AMDYFTTTEGAKADNEFYTSE  560

4) Lp16_1956 in NC_021514


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  596 bits (2250),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 333/561 (60%), Positives = 453/561 (81%), Gaps = 1/561 (0%)

Query  1    MIEYVDQVLSGQVLAGQKIKWACERFKRDLSRSKDDSFPFYYDEDKAAQAVKFIELMPKT  60
            M +Y+++VLSG+++A +KI  ACER   DL RSK DSFP+ +DE++A++A+KFIEL+P T
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGSQLTMQPFQKWLISELYGWREKATGNRRYDRAFISMARKNGKTYLASGMAANGLLRER  120
            DG  + M  FQK +++ LYGWR K    RR++RAF SM+RKNGKTY+ASGMAAN+L+ E+
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  QPARNRQVLFVSNALKQAKLGYDMLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQAL  180
            +PA  RQVLFVSNALKQAKLGYDMLS++LR+V K SK++R ++K+ +  I +L ++S A+
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASDTSTLDGYAGTTVILDEWHEAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPM  240
            ALAS+TSTLDG+A TT ILDEWHEAK RK YNV+KSG +Q+ N+LL VIST+GL+LNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  HAEYDMLTDVLKGKTEADRYFVAIWELDDREEVYDQANWIKANPLFSEPHAKQRMTEKIQ  300
              EY +L  VLKG  +ADRYF+AIWELDD EE+ DQ +WIKANP+F   + K+ M   IQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  ADVDLAIKQNNLIPILVKNFNMWLQASEDSYISADDWSAGKLAKVPDLHNRDAYIGIDLS  360
             DV+LA+KQNNL ++LVKNFN+W QASEDSY+ A+DW A  +    D+  +  YIG+DLS
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEP-QDITGKPVYIGVDLS  359

Query  361  KSNDLTAVSWLVPIGNGQFYCDSHSFVGTKYGLDSKIKRDGIDYRSMERAGECSITRLDS  420
            K++DLT+VSW+VP++NG++YCDSHSFV+TKYGL+ K KRDG+ YR +E+AGECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  421  GIIDYDDLFDFVQKLVGKYNWKVKAIAYDPYNAQTLITKFEKLSYPLFEVRQGTKTLNIP  480
            GI+DYD++F+F+Q L+   +    +I YDPYNA++LI+K EK +YP++EVRQGT TLN+P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  481  TRNFRDQLYDDKIKHNGNKILAYAVNNAILKVLNNGWQLDKARNSNRIDPIAALINAFVA  540
            TR FR+Q+Y++++ HN N IL+ AVNNAILK  NNG Q++K++NSN+IDPIAALINA+V 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVF  539

Query  541  GMDYYQESEDQQHAEDYYKTA  561
            +MDY+  +E+ +  +++Y + 
Sbjct  540  AMDYFTTTEGAKADNEFYTSE  560

5) lp_2466 in NC_004567


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  596 bits (2250),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 332/561 (60%), Positives = 451/561 (81%), Gaps = 1/561 (0%)

Query  1    MIEYVDQVLSGQVLAGQKIKWACERFKRDLSRSKDDSFPFYYDEDKAAQAVKFIELMPKT  60
            M +Y+++VLSG+++A +KI  ACER   DL RSK DSFP+ +DE++A++A+KFIEL+P T
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGSQLTMQPFQKWIISELYGWREKTTGNRRYDRAFISMARKNGKTYLASGMAANGLLRER  120
            DG  + M  FQK I++ LYGWR K    RR++RAF SM+RKNGKTY+ASGMAAN+L+ E+
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  QPARNRQVLFVSNALKQAKLGYDMLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQAL  180
            +PA  RQVLFVSNALKQAKLGYDMLS++LR+V K SK++R ++K+ +  I +L ++S A+
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASDTSTLDGYAGTTVILDEWHEAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPM  240
            ALAS+TSTLDG+A TT ILDEWHEAK RK YNV+KSG +Q+ N+LL VIST+GL+LNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  HAEYDMLTDVLKGKTEADRYFVAIWELDDREEVYDQANWIKANPLFSEPHVKQRMTEKIQ  300
              EY +L  VLKG  +ADRYF+AIWELDD EE+ DQ +WIKANP+F   ++K+ M   IQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  ADVDLAIKQNNLIPILVKNFNMWLQASEDSYISADDWAAGKLAKVPDLHNRVAYIGIDLS  360
             DV+LA+KQNNL ++LVKNFN+W QASEDSY+ A+DW A  +    D+  +  YIG+DLS
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEP-QDITGKPVYIGVDLS  359

Query  361  KSNDLTAVSWLIPIGNGQFYCDSHSFIGIKYGLSSKIKRDGIDYRSMERAGECSITRLDS  420
            K++DLT+VSW++P++NG++YCDSHSF++ KYGL  K KRDG+ YR +E+AGECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  421  GIIDYDDLFDFVQKLIGKYNWKVKAIAYDPYNSQTLITKFEKLNYPLFEVRQGTKTLNIP  480
            GI+DYD++F+F+Q LI   +    +I YDPYN+++LI+K EK NYP++EVRQGT TLN+P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  481  TRNFRDQLYDNKIKHNGNKILAYAVNNAILKVLNNGWQLDKARNSNRIDPIAALINAFVA  540
            TR FR+Q+Y+ ++ HN N IL+ AVNNAILK  NNG Q++K++NSN+IDPIAALINA+V 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVF  539

Query  541  GMDYYQESEDQQHAEDYYKTA  561
            +MDY+  +E+ +  +++Y + 
Sbjct  540  AMDYFTTTEGAKADNEFYTSE  560

6) PECL_597 in NC_016605


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  534 bits (2016),  Expect = 5e-153, Method: Compositional matrix adjust.
 Identities = 301/555 (55%), Positives = 419/555 (76%), Gaps = 1/555 (0%)

Query  5    VKEYCLDVLANKIVAGQKIKQACQRHLDDLEKQSSKEFPYYFDIGQAEKAIKLIEMLPKT  64
            +++Y   VL+ K++A +KI QAC+RH+ DLE+  S  FPY FD  QA KAIK+IE+LP T
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  65   DGTSLKMLPFQKFIVGSLYGWREDGTGYRRFRQAYISMARKNGKTFLASGMAVNTLLGEK  124
            DG ++KML FQKFI+GSLYGWR     YRRF +A+ SM+RKNGKT++ASGMA N+L+ E+
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  125  LPAKNRQIMFVANSSGQAHLGYDMLSSSLNQIRKQSKYIRDRVKVQKQAITDLNSDSKAV  184
             PA  RQ++FV+N+  QA LGYDMLS+SL ++ K SK++R ++K+ +  I +L S+S A+
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  185  VLASDTKSLDGMAGTLIVYDEFHKSKTREVYNVMKSGQVKEPNALLTIISTSGLDLNVPM  244
             LAS+T +LDG A T  + DE H +KTR  YNV+KSG  ++ N+LL +IST+GLDLNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  245  YQEYQTLSKVLAGKSKADQYFVAIWELDDKEEVFEQSKWEKANPLFGDEDVRKQMTTSIQ  304
            Y+EY  L +VL G  +AD+YF+AIWELDD EE+ +Q KW KANP+F  E+++K M  +IQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  305  SDVDLAVEQGNLTPVLVKNFNMWEQARSDSYIAVEDWNKGLSSELDIHNRDVYFGVDLSK  364
             DV+LA+ Q NL +VLVKNFN+W QA  DSY+  EDW+       DI  + VY+GVDLSK
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  365  SSDLTAVSWLIPTQNGRFYVDSHAFVATKYGLDHKIKTDGIDYRSLERKGECSITKLESG  424
            + DLT+VSW++P +NG +Y DSH+FVATKYGL++K K DG+ YR LE+ GECSIT+LESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  425  VIDYDDVFNFMREMVGKYNLVVKGVCYDPWSFDYLLPDFEKAGYPLIEIRQGVKTLGIPT  484
            ++DYD+VF+F+++++   +L   G+CYDP + + L++  EKA YP++E+RQG  TL +PT
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480

Query  485  KRFKEELIKGNIKHSDNKLLAFNVNNAILKYDINNNPMIDKAKASNKIDEVGALMNAYTA  544
            + F+E++  GN+ H+ N +L+  VNNAILK D NN   I+K+K SNKID ++AL+NAY  
Sbjct  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTD-NNGIQINKSKNSNKIDPIAALINAYVF  539

Query  545  GMNYFDEQEASKANN  559
            +M+YF   E++KA+N
Sbjct  540  AMDYFTTTEGAKADN  554

7) LRI_1510 in NC_021494


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  533 bits (2013),  Expect = 9e-153, Method: Compositional matrix adjust.
 Identities = 313/566 (56%), Positives = 433/566 (77%), Gaps = 6/566 (1%)

Query  1    MIKYVDDVLSGKIVAGNKIRLACERYKRDLERSKSDDFPFYYDEKMARKACQFVQMLPLT  60
            M  Y++ VLSGK++A +KI  ACER   DLERSKSD FP+ +DE  A KA +F+++LP T
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  61   DGGKFHLAEYQEWIVSELYGWRVKETGERRYTQGMVSMARKSGKTYLAASLAAIGLMMEN  120
            DG  + +  +Q  I++ LYGWR KE   RR+ ++  SM+RK+GKTY+A+++AA +L+ME+
Sbjct  61   DGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQ  120

Query  121  KPAKNRQVLFVSNALKQAKLGYNMLSSSLRQVQKTSRLVRHRVKVQKERITDLPTDSFAT  180
             PA  RQVLFVSNALKQAKLGY+MLS+SLR+V K+S+++R ++K+ + +I +LP++SFA 
Sbjct  121  EPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAM  180

Query  181  ALASDTNTLDGYAGTTIILDEYAAAKDRKVYDVLKSGQAQEPNSLLLIISTSGLDLNVPM  240
            ALAS+T+TLDG+A TT ILDE   AK RK Y+V+KSG +Q+ N+LL +IST+GLDLNVPM
Sbjct  181  ALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPM  240

Query  241  YTEYKMLSDVLAGKKQADRYFIAIWELDDRKEVTKPKTWIKANPIFEIPAIKKRMQPKIQ  300
            Y EY +L  VL G  QADRYFIAIWELDD  E+     WIKANPIFE   IKK M P IQ
Sbjct  241  YEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  301  DDVDLGIAQDDLIPVLTKNFNMWLQAADDSYISVDDWDKTEIDTPDTTGRDVYIGVDMSK  360
            DDV+L++ Q++L +VL KNFN+W QA++DSY+  +DW+ TE++  D TG+ VYIGVD+SK
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  361  TNDLTAISWIVPVD-GRFYVDSHSWVGTKYGLDRKIKLDGFNYRAGEKRGECSITTLESG  419
            T+DLT++SWIVP+D G +Y DSHS V+TKYGL+ K K DG+ YR  EK GECSIT LESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  420  VIDTDDVFNYLVNLSNKHHWKPI-ICYDPYNFNDILTKIEKHMPNWDMRAVRQGSLTLNV  478
            ++D D+VF+++ +L + ++   + ICYDPYN N +++K EK  +N  M  VRQG++TLNV
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEK--ANYPMLEVRQGTITLNV  478

Query  479  PTRDFRDKLFQKKIIHGNNKLLRYSMINARIKEDNNGWQLQKKSRNSNSRIDPAAALMNA  538
            PTR FR+++++ ++IH +N +L  ++ NA +K DNNG Q++K   +++++IDP AAL+NA
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINK--SKNSNKIDPIAALINA  536

Query  539  YVFARSYFDDQEKSKTLNDFYSSPEF  564
            YVFA  YF   E +K+ N+FY+S EF
Sbjct  537  YVFAMDYFTTTEGAKADNEFYTSEEF  562

8) LRHM_2790 in NC_017482


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  475 bits (1790),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 282/566 (50%), Positives = 407/566 (72%), Gaps = 6/566 (1%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK++++ L+GWR KE   RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKAEAFAPETWEKSNPLLANAERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D   E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTREKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D   K VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLES  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+LES
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI DLI+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD--QNKESEVADNDFYSSDDFGF  567
            +AMD     E+  ADN+FY+S++F+F
Sbjct  539  FAMDYFTTTEGAKADNEFYTSEEFSF  564

9) terL in NC_013198


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  475 bits (1790),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 282/566 (50%), Positives = 407/566 (72%), Gaps = 6/566 (1%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK++++ L+GWR KE   RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKAEAFAPETWEKSNPLLANAERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D   E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTREKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D   K VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLES  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+LES
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI DLI+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD--QNKESEVADNDFYSSDDFGF  567
            +AMD     E+  ADN+FY+S++F+F
Sbjct  539  FAMDYFTTTEGAKADNEFYTSEEFSF  564

10) LBPG_01497 in NC_022112


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  463 bits (1746),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 279/566 (50%), Positives = 404/566 (72%), Gaps = 6/566 (1%)

Query  5    TEYTDKVLSGEIAAGKKIKQAARRYRRDLKASKRKKNPWPYYFDENFANKAVEFIELMPA  64
             +Y +KVLSG + A KKI QA  R   DL   + K ++ PY FDE+ A KA+ FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGTSLKLELFQKWLISELFGWRDKVTGNRRFDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK +++ L+GWR K    RRF+RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANAERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D  +E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTKGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYMYADSHSFVGTKYGLEEKIKRDGFDYNAGATRGECSITKLDS  423
            K+ DLTS+SW+VP ++G +Y DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDLIERNRWNVRAICYDPWSFGYLLPEFEKRDLPMVEVRQGQRTLSIP  483
            G++DYD+V++FI DLI+ N  +  +ICYDP +   L++  EK + PM+EVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TVRFRDDLFNGLLKHADNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYT  543
            T  FR+++++G + H  N +L+ AVNNAILK D N    I+K+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD--QNKESEVADNDFYSSDDFGF  567
            +AMD     E+  ADN+FY+S++F+F
Sbjct  539  FAMDYFTTTEGAKADNEFYTSEEFSF  564

11) terL in NC_013199


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  462 bits (1740),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 273/544 (51%), Positives = 395/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK++++ L+GWR KE   RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKVLTGREQADRYFIAVFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSL  304
            MY EY ++ +VL G EQADRYFIA+ E D  +E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI DLI+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKARNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K++N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

12) terL in NC_013199


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  461 bits (1737),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 272/544 (50%), Positives = 395/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAVEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KA+ FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLTADLGALYLLME  124
             DG ++K+  FQK++++ L+GWR KE   RR++RA+ SM+RKNGK++++++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKVLTGREQADRYFIAIFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSL  304
            MY EY ++ +VL G EQADRYFIAI E D  +E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDMIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI D+I+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

13) LOCK908_1089 in NC_021725


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  461 bits (1737),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 272/544 (50%), Positives = 395/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAVEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KA+ FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLTADLGALYLLME  124
             DG ++K+  FQK++++ L+GWR KE   RR++RA+ SM+RKNGK++++++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+T      +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKVLTGREQADRYFIAIFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSL  304
            MY EY ++ +VL G EQADRYFIAI E D  +E    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDMIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI D+I+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

14) LCAZH_1009 in NC_014334


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  457 bits (1721),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 269/544 (50%), Positives = 393/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVAGKKIKQAARRYRRDLRASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKWLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLRE  124
             DG ++K+  FQK +++ L+GWR KE   RR++RA+ SM+RKNGK+++ ++++A  L+ E
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DMLS++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARSDEILRTLKTGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A++      +K+G  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKVLTGREQADRYFIAIFEQDSKDDAFAPETWEKSNPLLANAERAKTMRPSL  304
            MY EY ++ +VL G EQADRYFIAI E D  ++    E W K+NP++ + E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTRDKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + +EP D  +K VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIP  483
            G++DYD+V++FI DLI+ N+ +  +ICYDP+    LI+  EK + P+LEVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKARNATKIDPVAALMNAYT  543
            T  FR+++++G++ H  N +L+ AVNNAILK D N    I+K++N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

15) LCBD_3112 in NC_017474


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  439 bits (1652),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 270/544 (50%), Positives = 392/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKWFISELFGWRDKATGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK +++ L+GWR K    RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMMSSGLRQVSKVSKSVRDRLKINRTEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DM+S++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARNDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+       +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANDERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D  +E    E W K+NP++ ++E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIKPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + + P D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFIIDLIEQNQWNVRAICYDPWSFGYLLPEFEKRDLPMIEVRQGQRTLSIP  483
            G++DYD+V++FI DLI++N+ +  +ICYDP +   L++  EK + PM+EVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TVRFRDDLFNGLLKHADNQLLAYAVNNAILKYDannnaiinkahnaTKIDPLAALMNAYT  543
            T  FR+++++G + H  N +L+ AVNNAILK D NN   INK+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTD-NNGIQINKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

16) terL in NC_010999


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  439 bits (1652),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 270/544 (50%), Positives = 392/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKWFISELFGWRDKATGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK +++ L+GWR K    RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMMSSGLRQVSKVSKSVRDRLKINRTEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DM+S++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARNDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+       +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANDERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D  +E    E W K+NP++ ++E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIKPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + + P D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFIIDLIEQNQWNVRAICYDPWSFGYLLPEFEKRDLPMIEVRQGQRTLSIP  483
            G++DYD+V++FI DLI++N+ +  +ICYDP +   L++  EK + PM+EVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TVRFRDDLFNGLLKHADNQLLAYAVNNAILKYDannnaiinkahnaTKIDPLAALMNAYT  543
            T  FR+++++G + H  N +L+ AVNNAILK D NN   INK+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTD-NNGIQINKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

17) LC2W_3095 in NC_017473


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  439 bits (1652),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 270/544 (50%), Positives = 392/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKWFISELFGWRDKATGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK +++ L+GWR K    RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMMSSGLRQVSKVSKSVRDRLKINRTEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DM+S++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARNDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+       +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANDERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D  +E    E W K+NP++ ++E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIKPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + + P D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFIIDLIEQNQWNVRAICYDPWSFGYLLPEFEKRDLPMIEVRQGQRTLSIP  483
            G++DYD+V++FI DLI++N+ +  +ICYDP +   L++  EK + PM+EVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TVRFRDDLFNGLLKHADNQLLAYAVNNAILKYDannnaiinkahnaTKIDPLAALMNAYT  543
            T  FR+++++G + H  N +L+ AVNNAILK D NN   INK+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTD-NNGIQINKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

18) BN194_30300 in NC_018641


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  439 bits (1652),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 270/544 (50%), Positives = 392/544 (73%), Gaps = 4/544 (0%)

Query  5    TEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPA  64
             +Y +KVLSG ++A KKI QA  R   DL   + K ++ PY FDE+ A KAI FIEL+P+
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDL--ERSKSDSFPYVFDEEQATKAIKFIELLPS  59

Query  65   RDGSPLKLELFQKWFISELFGWRDKATGNRRYDRAYISMARKNGKSFLMADLGALYLLME  124
             DG ++K+  FQK +++ L+GWR K    RR++RA+ SM+RKNGK+++ ++++A  L+ME
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  NKPAMNREIVYTANSNAQAHLAFDMMSSGLRQVSKVSKSVRDRLKINRTEIIDLPSNSRA  184
            + PA  R++++ +N+  QA L++DM+S++LR+V K SK +R +LKI  + I +LPSNS A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  VPLASDLHSLDGYQSDLAIIDEFALARNDEILRTLKSGQINSDNSLLAVISTTGPDLNGP  244
            ++LAS+  +LDG+ +  AI+DE   A+       +KSG  +  N+LL VIST+G DLN P
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEYKFVSKILTGREQADRYFIAIFEQDSKDEAFAPETWEKSNPLLANDERAKTMRPSL  304
            MY EY ++ ++L G EQADRYFIAI E D  +E    E W K+NP++ ++E  K M P++
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTI  299

Query  305  QADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIKPPDTMGKDVYIGLDLS  364
            Q DV+LA KQ  L ++LVKNFN+W+ A  DSY+  +DW+ + + P D  GK VYIG+DLS
Sbjct  300  QDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLS  359

Query  365  KSSDLTSISWLVP-EDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDS  423
            K+ DLTS+SW+VP ++G LY DSHSFV+TKYGL++K KRDG+ Y      GECSIT+L+S
Sbjct  360  KTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLES  419

Query  424  GMIDYDEVLRFIIDLIEQNQWNVRAICYDPWSFGYLLPEFEKRDLPMIEVRQGQRTLSIP  483
            G++DYD+V++FI DLI++N+ +  +ICYDP +   L++  EK + PM+EVRQG  TL++P
Sbjct  420  GIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVP  479

Query  484  TVRFRDDLFNGLLKHADNQLLAYAVNNAILKYDannnaiinkahnaTKIDPLAALMNAYT  543
            T  FR+++++G + H  N +L+ AVNNAILK D NN   INK+ N+ KIDP+AAL+NAY 
Sbjct  480  TRTFREQVYEGNVIHNKNTILTHAVNNAILKTD-NNGIQINKSKNSNKIDPIAALINAYV  538

Query  544  IAMD  547
            +AMD
Sbjct  539  FAMD  542

19) JDM1_0044 in NC_012984


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  435 bits (1639),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 245/418 (59%), Positives = 337/418 (81%), Gaps = 1/418 (0%)

Query  1    MLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQALALASDTSTLDGYAGTTVILDEWH  60
            MLS++LR+V K SK++R ++K+ +  I +L ++S A+ALAS+TSTLDG+A TT ILDEWH
Sbjct  144  MLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMALASETSTLDGFAPTTAILDEWH  203

Query  61   EAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPMHAEYDMLTDVLKGKTEADRYFVA  120
            EAK RK YNV+KSG +Q+ N+LL VIST+GL+LNVPM  EY +L  VLKG  +ADRYF+A
Sbjct  204  EAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYEEYLLLDRVLKGEEQADRYFIA  263

Query  121  IWELDDREEVYDQTNWIKANPLFSEPHVKQRMTEKIQADVDLAIKQNNLIPILVKNFNMW  180
            IWELDD EE+ DQ +WIKANP+F   ++K+ M   IQ DV+LA+KQNNL ++LVKNFN+W
Sbjct  264  IWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQDDVNLALKQNNLNSVLVKNFNLW  323

Query  181  LQASEDSYISADDWAAGKLAKVPDLHNRDAYIGIDLSKSNDLTAVSWLVPIGNGQFYCDS  240
             QASEDSY+ A+DW A  +    D+  +  YIG+DLSK++DLT+VSW+VP++NG++YCDS
Sbjct  324  RQASEDSYMIAEDWQATEVEP-QDITGKPVYIGVDLSKTDDLTSVSWIVPLDNGELYCDS  382

Query  241  HSFVGTKYGLDSKIKRDGIDYRSMERAGECSITRLDSGIIDYDNLFYFVQKLVGKYNWKV  300
            HSFV+TKYGL+ K KRDG+ YR +E+AGECSIT+L+SGI+DYD++F F+Q L+   +   
Sbjct  383  HSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESGIVDYDQVFQFIQDLIQENDLEC  442

Query  301  KAIAYDPYNAQTLITKFEKLSYPLFEVRQGTKTLNIPTRNFRDQLYDDKIKHNGNKILAY  360
             +I YDPYNA++LI+K EK +YP++EVRQGT TLN+PTR FR+Q+Y++++ HN N IL+ 
Sbjct  443  MGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPTRTFREQVYEGNVIHNKNTILTH  502

Query  361  AVNNAILKVLNNGWQLDKARNSNRIDPIAALINAFVAGMDYYQESEDQQHAEDYYKTA  418
            AVNNAILK  NNG Q++K++NSN+IDPIAALINA+V +MDY+  +E+ +  +++Y + 
Sbjct  503  AVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYVFAMDYFTTTEGAKADNEFYTSE  560

20) BaLi_c06930 in NC_021362


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  395 bits (1487),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 255/569 (45%), Positives = 396/569 (70%), Gaps = 10/569 (1%)

Query  5    VTEYARAVVNGEIVAGEFIILACKRHLEDLEKSKLHTFMYYFDVEEANTRIDFTEILPNP  64
            + +Y   V++G ++A   II AC RH+ DLE+SK ++F Y FD E+A   I F E+LP+ 
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  65   ETGEPVKLLRFQKWIIGSIFGWKRKDNGNRRFKRAMISMARRNGKTFIISTMGTNELFLC  124
            + G ++K+L FQK I+GS++GW+ K+   RRF+RA  SM+R+NGKT+I S M++N L++ 
Sbjct  61   D-GKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  ETPKRNRKIVFASNALKQAKLGFEYMKDQIRSLAKGSKPMKKRVKIKDAEIKDLFSGSTA  184
            + P   R+++F SNALKQAKLG++ + + +R++ K+SK ++ ++KI ++ I++L S S A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  YPISSDTSTGDGFASTVAIIDEFHESKDLKMYNVLKSGQIALENSLLAIISTAGLNPNVP  244
             +++S+TST DGFA+T AI+DE HE+K  K YNV+KSG     N+LL +ISTAGL+ NVP
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEIQMLKRVLKKEREMDDYFIAIYEQDDVEKEAELPETWIKSNPILEHPEIGQTIMES  304
            MY E  +L RVLK E + D YFIAI E DD E   +  E WIK+NPI+E  EI + ++ +
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHD-QEKWIKANPIFESEEIKKVMIPT  298

Query  305  LKLDLVAAKEQHNLNALYVKNFNVWRQASEESFISIDDWNQCGTDKVPNLEGLDVYIGLD  364
            ++ D+  A  Q+NLN++ VKNFN+WRQASE+S++  +DW+    +   ++ G  VYIG+D
Sbjct  299  IQDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEP-QDITGKPVYIGVD  357

Query  365  MARSDDLAAVSFIFPLNDERQRYFVDSHSFVGTKGGLDAKISRDKIDYRGLAERGYCTIT  424
            ++++DDL++VS I PL++     + DSHSFV+TK GL+ K  RD + YR L   G C+IT
Sbjct  358  LSKTDDLTSVSWIVPLDNG--ELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSIT  415

Query  425  DKDTGIINQQQVLDYIKNRIKTQKLDVKGILYDPHAISLLLNELE--EYPLIEVGQGAKR  482
            + ++GI++ +QV+++I++ I+ + L+  GI YDP   + L++  E  +YP++EV QG+  
Sbjct  416  QLESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTIT  475

Query  483  LSPPSKDFRLCVYDKRIVHANNPLLTIAVNNAIVKEFNDLIRIDKEKNREKIDPIVALIT  542
            L+ P++ FR  VY+  ++H +N +LT AVNNAI+K  N+ I+I+K KN +KIDPI ALI 
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALIN  535

Query  543  AH-FEAMYYYSDDFDW--NSYYESDDFTL  568
            A  F   Y+ + +     N +Y S++F++
Sbjct  536  AYVFAMDYFTTTEGAKADNEFYTSEEFSF  564

21) gp2 in NC_014551


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  392 bits (1473),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 254/567 (45%), Positives = 399/567 (71%), Gaps = 13/567 (2%)

Query  8    YARKVVNGEIIACRKIILACQRHLDDIEKSKTDSFNYCFNVEEAQESISFIETLSNPETG  67
            Y  KV++G +IA +KII AC+RH+ D+E+SK+DSF Y F+ E+A  +I FIE L++ + G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  68   EGLELLMFQKWIIGSIFGWIRKDNGHRRFKRAMISMARRNGKSLIVAAIGGKEFILGDSP  127
             ++ +L FQK I+GS++GW  K+   RRF+RA  SM+R+NGK+ I ++++++ +I+ + P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  128  QMNRKIVFASNAMKQARHGFEYMQGQFRILSKQSKSIKRSVKVLKDSIEDKSSNSKAYPV  187
               R+++F SNA+KQA+ G++ +   +R + K SK ++  +K+++  I++ +SNS A ++
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  188  ASDTGKLDGFASTVAIIDEFHESPDLKMYNVLKTGQVGLKSSLLAIVSTAGLNPNVPMYK  247
            AS+T+ LDGFA+T AI+DE HE+   K YNV+K+G    K++LL ++STAGL+ NVPMY 
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE  242

Query  248  EIQMLDRVLEGNLTMDDYFIAIYEQDDVEKEIDMPETWIKSNPRLEDEEAASFMVDNIKT  307
            E  +LDRVL G+   D YFIAI E DD E EI+  E WIK+NP +E EE    M+  I+ 
Sbjct  243  EYLLLDRVLKGEEQADRYFIAIWELDDPE-EIHDQEKWIKANPIFESEEIKKVMIPTIQD  301

Query  308  DVQAAKVQRNLNSLYVKTFNVWRQASEQSYIPLDDWNACAVEEAPDIRGKEVYIGLDMAK  367
            DV+ A  Q NLNS+ VK FN+WRQASE+SY+  +DW+A  V E+ DI GK VYIG+D++K
Sbjct  302  DVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEV-EPQDITGKPVYIGVDLSK  360

Query  368  VEDLAAVSWIYPLEDEKKRFYIDSHSFVGTKGGIEAKCQRDKIDYKQLAAEGYCTITDKH  427
             +DL++VSWI PL++    +Y DSHSFV+TK G++ K +RD + Y++L   G C+IT+ +
Sbjct  361  TDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  428  TGIINQQQVIDYIKNHIEENDLKVRGLLFDPHIVGLVLNELE--DYPQIEVGQVATKLNA  485
            +GI++ +QV+++I++ I+ENDL   G+ +DP     +++  E  +YP +EV Q +  LN 
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNV  478

Query  486  PVKDLRLCVYDQRLIHSNNPLLTEAVNNAIVKEFNDLTRLVKEKNRNKIDPIIAGIIAHY  545
            P + +R  VY+  +IH++N +LT+AVNNAI+K  N+  ++ K KN NKIDP IA++I  Y
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDP-IAALINAY  537

Query  546  E-AMHHYS----DEYDQDYYANYNFAL  567
              AM+ ++       D+++Y++ +F++
Sbjct  538  VFAMDYFTTTEGAKADNEFYTSEEFSF  564

22) gp2 in NC_017188


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  392 bits (1473),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 254/567 (45%), Positives = 399/567 (71%), Gaps = 13/567 (2%)

Query  8    YARKVVNGEIIACRKIILACQRHLDDIEKSKTDSFNYCFNVEEAQESISFIETLSNPETG  67
            Y  KV++G +IA +KII AC+RH+ D+E+SK+DSF Y F+ E+A  +I FIE L++ + G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  68   EGLELLMFQKWIIGSIFGWIRKDNGHRRFKRAMISMARRNGKSLIVAAIGGKEFILGDSP  127
             ++ +L FQK I+GS++GW  K+   RRF+RA  SM+R+NGK+ I ++++++ +I+ + P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  128  QMNRKIVFASNAMKQARHGFEYMQGQFRILSKQSKSIKRSVKVLKDSIEDKSSNSKAYPV  187
               R+++F SNA+KQA+ G++ +   +R + K SK ++  +K+++  I++ +SNS A ++
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  188  ASDTGKLDGFASTVAIIDEFHESPDLKMYNVLKTGQVGLKSSLLAIVSTAGLNPNVPMYK  247
            AS+T+ LDGFA+T AI+DE HE+   K YNV+K+G    K++LL ++STAGL+ NVPMY 
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE  242

Query  248  EIQMLDRVLEGNLTMDDYFIAIYEQDDVEKEIDMPETWIKSNPRLEDEEAASFMVDNIKT  307
            E  +LDRVL G+   D YFIAI E DD E EI+  E WIK+NP +E EE    M+  I+ 
Sbjct  243  EYLLLDRVLKGEEQADRYFIAIWELDDPE-EIHDQEKWIKANPIFESEEIKKVMIPTIQD  301

Query  308  DVQAAKVQRNLNSLYVKTFNVWRQASEQSYIPLDDWNACAVEEAPDIRGKEVYIGLDMAK  367
            DV+ A  Q NLNS+ VK FN+WRQASE+SY+  +DW+A  V E+ DI GK VYIG+D++K
Sbjct  302  DVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEV-EPQDITGKPVYIGVDLSK  360

Query  368  VEDLAAVSWIYPLEDEKKRFYIDSHSFVGTKGGIEAKCQRDKIDYKQLAAEGYCTITDKH  427
             +DL++VSWI PL++    +Y DSHSFV+TK G++ K +RD + Y++L   G C+IT+ +
Sbjct  361  TDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  428  TGIINQQQVIDYIKNHIEENDLKVRGLLFDPHIVGLVLNELE--DYPQIEVGQVATKLNA  485
            +GI++ +QV+++I++ I+ENDL   G+ +DP     +++  E  +YP +EV Q +  LN 
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNV  478

Query  486  PVKDLRLCVYDQRLIHSNNPLLTEAVNNAIVKEFNDLTRLVKEKNRNKIDPIIAGIIAHY  545
            P + +R  VY+  +IH++N +LT+AVNNAI+K  N+  ++ K KN NKIDP IA++I  Y
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDP-IAALINAY  537

Query  546  E-AMHHYS----DEYDQDYYANYNFAL  567
              AM+ ++       D+++Y++ +F++
Sbjct  538  VFAMDYFTTTEGAKADNEFYTSEEFSF  564

23) BAXH7_03144 in NC_017191


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  392 bits (1473),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 254/567 (45%), Positives = 399/567 (71%), Gaps = 13/567 (2%)

Query  8    YARKVVNGEIIACRKIILACQRHLDDIEKSKTDSFNYCFNVEEAQESISFIETLSNPETG  67
            Y  KV++G +IA +KII AC+RH+ D+E+SK+DSF Y F+ E+A  +I FIE L++ + G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  68   EGLELLMFQKWIIGSIFGWIRKDNGHRRFKRAMISMARRNGKSLIVAAIGGKEFILGDSP  127
             ++ +L FQK I+GS++GW  K+   RRF+RA  SM+R+NGK+ I ++++++ +I+ + P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  128  QMNRKIVFASNAMKQARHGFEYMQGQFRILSKQSKSIKRSVKVLKDSIEDKSSNSKAYPV  187
               R+++F SNA+KQA+ G++ +   +R + K SK ++  +K+++  I++ +SNS A ++
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  188  ASDTGKLDGFASTVAIIDEFHESPDLKMYNVLKTGQVGLKSSLLAIVSTAGLNPNVPMYK  247
            AS+T+ LDGFA+T AI+DE HE+   K YNV+K+G    K++LL ++STAGL+ NVPMY 
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE  242

Query  248  EIQMLDRVLEGNLTMDDYFIAIYEQDDVEKEIDMPETWIKSNPRLEDEEAASFMVDNIKT  307
            E  +LDRVL G+   D YFIAI E DD E EI+  E WIK+NP +E EE    M+  I+ 
Sbjct  243  EYLLLDRVLKGEEQADRYFIAIWELDDPE-EIHDQEKWIKANPIFESEEIKKVMIPTIQD  301

Query  308  DVQAAKVQRNLNSLYVKTFNVWRQASEQSYIPLDDWNACAVEEAPDIRGKEVYIGLDMAK  367
            DV+ A  Q NLNS+ VK FN+WRQASE+SY+  +DW+A  V E+ DI GK VYIG+D++K
Sbjct  302  DVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEV-EPQDITGKPVYIGVDLSK  360

Query  368  VEDLAAVSWIYPLEDEKKRFYIDSHSFVGTKGGIEAKCQRDKIDYKQLAAEGYCTITDKH  427
             +DL++VSWI PL++    +Y DSHSFV+TK G++ K +RD + Y++L   G C+IT+ +
Sbjct  361  TDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  428  TGIINQQQVIDYIKNHIEENDLKVRGLLFDPHIVGLVLNELE--DYPQIEVGQVATKLNA  485
            +GI++ +QV+++I++ I+ENDL   G+ +DP     +++  E  +YP +EV Q +  LN 
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNV  478

Query  486  PVKDLRLCVYDQRLIHSNNPLLTEAVNNAIVKEFNDLTRLVKEKNRNKIDPIIAGIIAHY  545
            P + +R  VY+  +IH++N +LT+AVNNAI+K  N+  ++ K KN NKIDP IA++I  Y
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDP-IAALINAY  537

Query  546  E-AMHHYS----DEYDQDYYANYNFAL  567
              AM+ ++       D+++Y++ +F++
Sbjct  538  VFAMDYFTTTEGAKADNEFYTSEEFSF  564

24) Lreu_0670 in NC_009513


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  387 bits (1457),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 237/561 (43%), Positives = 390/561 (70%), Gaps = 4/561 (0%)

Query  6    QYANSVVKGELVAGKLVTHACQRFLDDMKKQKTDDFPYYYSETYAGKVIKFVESLPQTNG  65
            +Y + V+ G L+A K + +AC+R + D+ + K+D FPY + E  A K IKF+E LP T+G
Sbjct  3    DYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTDG  62

Query  66   EPLKLEPFEVFILSNIYGWRQVDDNSLRFNRILLSEARKNGKSFLLAAIGVVSLLMEKQP  125
             ++K+  F+ FIL+++YGWR  ++N  RFNR + S +RKNGK+++ ++++  +L+ME++P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  126  ARNRQILFTANSSQQAHLAFDIMSDQLENLRRNSKYLRQRVKINKQRVTDKKTGSFAIPL  185
            A  RQ+LF +N+ +QA L++D++S+ L N+ ++SK+LR ++KI + ++ +  + SFA++L
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  186  STDTHSTDGYNPTLGVVDEYHQAKDNTILNALNSGMAQQDNGILAIISTAGFNLNSPFKN  245
            +++T + DG+ PT +++DE H+AK     N ++SGM+QQ NG+L +ISTAG++LN P  +
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE  242

Query  246  EWDYAADILNSKIKNDRYFAVMYCLDKKEEIFNPEMWIKANPLMSNPKIAKTMREHIQND  305
            E      +L++  + DRYF  +  LD  EEI + E WIKANP+  +  I K M   IQ+D
Sbjct  243  EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQDD  302

Query  306  LDVATKQnninnvlvknmnmFVQQNENSYISTQDWEHGLIEKAPDISNRDVYIGADLSKS  365
            +++A KQNN+N+VLVKN N+  Q +E+SY+ ++DW+   +E + DI+ + VYIG DLSK+
Sbjct  303  VNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVE-PQDITGKPVYIGVDLSKT  361

Query  366  RDLTAISWLVPLEDEKFYADSHAFV-SRYGGIVTKSKRDGIDYEMAAKRGECSISSLESG  424
             DLT++SW+VPL++  +Y DSH+FV ++Y G+  K KRDG+ Y    K GECSI+ LESG
Sbjct  362  DDLTSVSWIVPLDNGELYCDSHSFVATKY-GLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  425  LIDYDSVYDFVMDLIGKYNLNVKFLVFDPYKWADLVNRFERAGLPQLQLTQSYKNLSVPI  484
            ++DYD V++F+ DLI   +L+   + +DPY+   L+++ E+A  P L++ Q+   L+VP 
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480

Query  485  GTFKEELIAGNILHTNNQMLAYNVENAILKYNFNGQALLDKTRKQNKIDCLAALMDAWAA  544
             TF+E++  GN++H +N +L+  V+NAILK + NG   ++K+++ NKID +AAL++A   
Sbjct  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYVF  539

Query  545  GYDYFAKRKEQERTNEYYETA  565
            + DYF+        NE+Y + 
Sbjct  540  AMDYFTTTEGAKADNEFYTSE  560

25) LAR_0644 in NC_010609


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  387 bits (1457),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 237/561 (43%), Positives = 390/561 (70%), Gaps = 4/561 (0%)

Query  6    QYANSVVKGELVAGKLVTHACQRFLDDMKKQKTDDFPYYYSETYAGKVIKFVESLPQTNG  65
            +Y + V+ G L+A K + +AC+R + D+ + K+D FPY + E  A K IKF+E LP T+G
Sbjct  3    DYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTDG  62

Query  66   EPLKLEPFEVFILSNIYGWRQVDDNSLRFNRILLSEARKNGKSFLLAAIGVVSLLMEKQP  125
             ++K+  F+ FIL+++YGWR  ++N  RFNR + S +RKNGK+++ ++++  +L+ME++P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  126  ARNRQILFTANSSQQAHLAFDIMSDQLENLRRNSKYLRQRVKINKQRVTDKKTGSFAIPL  185
            A  RQ+LF +N+ +QA L++D++S+ L N+ ++SK+LR ++KI + ++ +  + SFA++L
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  186  STDTHSTDGYNPTLGVVDEYHQAKDNTILNALNSGMAQQDNGILAIISTAGFNLNSPFKN  245
            +++T + DG+ PT +++DE H+AK     N ++SGM+QQ NG+L +ISTAG++LN P  +
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE  242

Query  246  EWDYAADILNSKIKNDRYFAVMYCLDKKEEIFNPEMWIKANPLMSNPKIAKTMREHIQND  305
            E      +L++  + DRYF  +  LD  EEI + E WIKANP+  +  I K M   IQ+D
Sbjct  243  EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQDD  302

Query  306  LDVATKQnninnvlvknmnmFVQQNENSYISTQDWEHGLIEKAPDISNRDVYIGADLSKS  365
            +++A KQNN+N+VLVKN N+  Q +E+SY+ ++DW+   +E + DI+ + VYIG DLSK+
Sbjct  303  VNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVE-PQDITGKPVYIGVDLSKT  361

Query  366  RDLTAISWLVPLEDEKFYADSHAFV-SRYGGIVTKSKRDGIDYEMAAKRGECSISSLESG  424
             DLT++SW+VPL++  +Y DSH+FV ++Y G+  K KRDG+ Y    K GECSI+ LESG
Sbjct  362  DDLTSVSWIVPLDNGELYCDSHSFVATKY-GLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  425  LIDYDSVYDFVMDLIGKYNLNVKFLVFDPYKWADLVNRFERAGLPQLQLTQSYKNLSVPI  484
            ++DYD V++F+ DLI   +L+   + +DPY+   L+++ E+A  P L++ Q+   L+VP 
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTITLNVPT  480

Query  485  GTFKEELIAGNILHTNNQMLAYNVENAILKYNFNGQALLDKTRKQNKIDCLAALMDAWAA  544
             TF+E++  GN++H +N +L+  V+NAILK + NG   ++K+++ NKID +AAL++A   
Sbjct  481  RTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQ-INKSKNSNKIDPIAALINAYVF  539

Query  545  GYDYFAKRKEQERTNEYYETA  565
            + DYF+        NE+Y + 
Sbjct  540  AMDYFTTTEGAKADNEFYTSE  560

26) LL3_03367 in NC_017190


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  383 bits (1441),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 262/570 (46%), Positives = 403/570 (71%), Gaps = 12/570 (2%)

Query  5    VTAYAQAVISGEIVAGEYIILACKRHMEDLERSKLAPFNYYFDVEEANTRIDFTEILPNP  64
            +  Y + V+SG ++A   II AC RH+ DLERSK  +F Y FD E+A   I F E+LP+ 
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  65   ETGEPVKLLSYQKWITGSIFGWkrkdndnrrfkrALVTMARRNGKTFLISTIGTNEFFLC  124
            + G ++K+L++QK I GS++GW+ K+ + RRF+RA+ +M+R+NGKT++ S +++N +++ 
Sbjct  61   D-GKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  125  ETPKRNRKIVFASNALKQAKLGFEYMKDQIRSLTNGSEAMKKRVKILDAELKDLFSGSTA  184
            + P   R+++F SNALKQAKLG++ + + +R++ ++S  ++ ++KI+++ +++L S S A
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  185  YPISSDTSTGDGFASTVAIIDEFHESKDLKMYNLLKSGQIALKNSLLAIISTAGLNPNVP  244
             +++S+TST DGFA+T AI+DE HE+K  K YN++KSG    KN+LL +ISTAGL+ NVP
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  245  MYKEVQMLKKVLRKERSMDDYFIAIYEQDDVEKEAELPETWIKSNPILEHPEIGETIMES  304
            MY E  +L +VL+ E   D YFIAI E DD E   +  E WIK+NPI+E  EI   ++ +
Sbjct  240  MYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHD-QEKWIKANPIFESEEIKKVMIPT  298

Query  305  LKLDLVAAKEQRNLNALYVKNFNVWRQVSEESYISIDDWNACAVEEAPDLVGREVYIGLD  364
            ++ D+  A  Q NLN++ VKNFN+WRQ SE+SY+  +DW+A  V E+ D+ G+ VYIG+D
Sbjct  299  IQDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEV-EPQDITGKPVYIGVD  357

Query  365  MSRSDDLTAASWIYPLDDAERKYYVDSHSFVATKGGLDHKITRDKIDYREMADRGYCTIT  424
            +S++DDLT+ SWI PLD++E   Y DSHSFVATK GL++K  RD + YRE+   G C+IT
Sbjct  358  LSKTDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSIT  415

Query  425  DKETGIINQQQVIDYIKHRIKSQKLKVKGILYDPHAISLVLNELE--EYPLIEVGQGAKR  482
            + E+GI++ +QV+++I++ I+ + L   GI YDP   + +++  E  +YP++EV QG+  
Sbjct  416  QLESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYPMLEVRQGTIT  475

Query  483  LSPPAKDFRLCVYDKRIIHTDNPLLTIAVNNAIVKEFNDLIRIDKDKNREKIDPIAAMIT  542
            L+ P++ FR  VY+  +IH  N +LT AVNNAI+K  N+ I+I+K KN +KIDPIAA+I 
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALIN  535

Query  543  AHYEAMHYY----ADEFDWNTYYESEEFTL  568
            A   AM+Y+    +   D N +Y SEEF++
Sbjct  536  AYVFAMDYFTTTEGAKAD-NEFYTSEEFSF  564

27) TEH_18120 in NC_016052


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  379 bits (1425),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 248/548 (46%), Positives = 375/548 (69%), Gaps = 14/548 (2%)

Query  6    VTEYAKKVVSGKILASKKNVKACQRHLDDL---KSTDLPYHFDVEKADHVIKFLQMLPDP  62
            + +Y  KV+SGK++A+KK ++AC+RH+ DL   KS  +PY FD E+A   IKF+++LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  63   KTGKIMKLAGFQKFIVGSLNGWYNKEGN-KRFTKAYISMSRKNGKTLIVSGLALYELLMG  121
              GK +K+ GFQKFI+GSL GW  KEGN +RF +A+ SMSRKNGKT I SG+A   L+M 
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  122  KDPINERLVGLSANSRDQASIAYDMTYAQLSSIRRVSPKIKGITKITPSAKEIEKVNDRS  181
            ++P + R V + +N+  QA ++YDM    L ++ + S  ++   KI  S   I+ +   S
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNS--KIQHLPSNS  177

Query  182  KVKAVSNEASNLEGHQFSYAIIDEYHEAKDKKIYETLRRGQVLLHNPSLIIISTAGTNMN  241
               A+++E+S L+G   + AI+DE HEAK +K Y+ ++ G     N  L +ISTAG ++N
Sbjct  178  FAMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLN  237

Query  242  GPMYEEYQYIDKVLSGNAENDNYFIFCAEQDKEEEIYDPDNWIKSNPLMEISELKKLLVK  301
             PMYEEY  +D+VL G+ + D YFI   E D  EEI D ++WIK+NP+ E  E+KK+++ 
Sbjct  238  VPMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIP  297

Query  302  NIQPEVKTALDSGSGLNGILIKNFNMWRQASEESYLDFNDWKKNE-EDFDIAGTKVYIGL  360
             IQ +V+ AL   + LN++L+KNFN+WRQASE+SY+  +DW+  E E  DI+G  VYIG+
Sbjct  298  TIQDDVNLALKQ-NNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGV  356

Query  361  DLSRADDLTSIS-FVHLNETNKQYYVTSHSFVGTKGGLQGKIERDLIDYYQLAKDGYCTI  419
            DLS++DDLTS+S +V L++   + Y  SHSFV+TK GLQ+K  RD + Y +L K G C+I
Sbjct  357  DLSKTDDLTSVSWIVPLDNG--ELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSI  414

Query  420  TDLSSGIINTDQVLDYIESYVSKNNLDVQAICYDPYAIHGVLAEMERRGWYYDLHEIRQG  479
            T+L SGI++ DQV+++I+  +  N+L+  +ICYDPY  +++++  E+    Y + E+RQG
Sbjct  415  TQLESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKAN--YPMLEVRQG  472

Query  480  PATLSNPTLDFKLKVIDGDVKHEKNPLLDRAVKNAIAKDTNDSIMIEKKMHREKIDPLMS  539
              TL+ PT  F+ +V +G+V H+KN +L +AV+NAI K  N++I I+K  + +KIDP+ +
Sbjct  473  TITLNVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAA  532

Query  540  TLFAYVIA  547
             + AYV+A
Sbjct  533  LINAYVFA  540

28) HMPREF0538_22099 in NC_015697


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  351 bits (1317),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 218/531 (42%), Positives = 362/531 (69%), Gaps = 6/531 (1%)

Query  6    KDYAEKVVAGKIIAGKKVILAAKRYLNDLKKADNDDFEYFYDNERANKVIQFMEILPDPK  65
            +DY EKV++GK+IA KK+I A  R ++DL ++ +D F Y +D+E+A K I+F+E+LP   
Sbjct  2    NDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD  61

Query  66   TMRAYPLADFQRFIIANMYGWWKKDKPSERRFRKGMLSMARKNGKSILISGIALYEFLMG  125
              +A  + +FQ+FI++++YGW+ K+  + RRF ++  SM+RKNGK+ + SG+A   ++M 
Sbjct  62   G-KAIKMLGFQKFILGSLYGWRTKE-GNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  126  NSPEFSRQIFCTANDKKQANIVFNMIKKRLNALRSSDGDTKRGTKVNRDLISNLDDYSYV  185
            + P  +RQ++  +N  KQA++ ++M+ + L  +  S    +   K+    I +L   S+ 
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFA  179

Query  186  RSLSKETGTVDGFEPHVGIMDEYAASKTTEMMELLESGQALLHNSLIMIISTAGFDLNVP  245
             +L+ ET+T+DGF P  +I+DE   +KT    +++ SG +   N+L+ +ISTAG+DLNVP
Sbjct  180  MALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVP  239

Query  246  MHTIEYPYATKVLKGEITDDTYFAYIAEQDNVSEVDDKSTWIKSNPILSVPALQDQVYGY  305
            M   EY    +VLKGE   D YF  I E D+  E++D+  WIK+NPI+    ++  +   
Sbjct  240  MYE-EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  306  LAKRWKEAKQKGTKNSVLVKNFNMWRQAEEDSYMDIDTWNAAQIDPIDIDNQRVWFGIDV  365
            +    + A ++   NSVLVKNFN+WRQA EDSYM  + W+A++++P DI  + V +G+D+
Sbjct  299  IQDDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDL  358

Query  366  GKSSDLYAISWLIP-QEGYWYADSYAFVGTKYGLEAKIKADRLDYVRLQGMGQCEITKLE  424
            +K+ DL ++SW++P ++G  Y DS +FV+TKYGL+ K K D L Y  L+  G+C IT+LE
Sbjct  359  SKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  425  SGVIDVERVYEWLDGFVREHNLDVQAICYDPAQYGTLLTQIEKGHPEWQQISVRQGTLTL  484
            SG++D ++V++ ++++++E++L+  +ICYDP +  +L+++ EK++     + VRQGT+TL
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKAN--YPMLEVRQGTITL  476

Query  485  SMPTKQFRDDVLDKRVRHSGNEILTGAMANAILKSDNNGVRIDKNRYSNKI  535
            ++PT+ FR++V +  V H+ N ILT A+ NAILK+DNNG++I+K++ SNKI
Sbjct  477  NVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKI  527

29) BSNT_02825 in NC_017196


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  351 bits (1319),  Expect = 7e-98, Method: Compositional matrix adjust.
 Identities = 247/567 (44%), Positives = 385/567 (68%), Gaps = 9/567 (1%)

Query  12   YAKKVVSGEITACKKVIKACQRHLRDLERAADPSYEYEYRPEKAKKVIKFLEMLPDISTG  71
            Y  KV+SG + A KK+I+AC+RH+ DLER+   S+ Y +  E+A K IKF+E+LP  + G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPS-TDG  62

Query  72   KPTKLALFQKFIVYMLYAWRNKETGFRRFTKAYISMARKGGKSVLVAGLSLYELIYGEAP  131
            K+ K+  FQKFI+  LY+WR KE  +RRF +A+ SM+RK GK+ + +G++   LI  + P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  132  KFDRQIYATANSRGQAKTVFKMISMQLKKIRSKSKFMRKWTKIIQNEIRYLKDDCVIMPL  191
               RQ+   +N+  QAK  + M+S  L+++   SKF+R   KI+++ I+ L  +   M+L
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  192  SRDTDNLDSLNVLIGILDEYHTASNTKMMEVLEssqgqqdqgliliisTAGFKLNGPMYS  251
            + +T  LD++    +ILDE H A   K  +V+ S+  QQ +GL+ +ISTAG+ LN PMY 
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMY-  241

Query  252  QEYPYVDDILSGRKENENYFAIVyeqddeeeiydeSTWIKSNPLLEVEGlqkkilknlrk  311
            +EY  +D +L G  + + YF  + E DD EEI D+  WIK+NP++E E ++K ++  ++ 
Sbjct  242  EEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQD  301

Query  312  klkealdkddlNGTLVKNFNIWQSASSESFINGNDWKKRGVDVAPDITGKPVYIGIDLSR  371
             ++ AL +++LN+ LVKNFN+W+ AS +S++ ++DW+   V+ + DITGKPVYIG+DLS+
Sbjct  302  DVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVE-PQDITGKPVYIGVDLSK  360

Query  372  TDDLSALGFIYPLEDENETFYVDSHSFVGTKGGLDNKIERDKLDYRTLAKAGYCTITDKK  431
            TDDL++++ I PL++ +  +Y DSHSFV+TK GL++K  RD L YR L KAG C+IT+  
Sbjct  361  TDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  432  SGIINLQQVVDYMINHIKEFDLQVKGIFFDPYNISLFLNEIEKYGYEDVLIEVRQGPRTL  491
            SGI++ +QV +++ + I+E DL+  GI +DPYN + +++  EK  Y   ++EVRQG  TL
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYP--MLEVRQGTITL  476

Query  492  SEPTKDFRLNVFDGKIIHSKNPLLDTAMHNAMLKKVNDTIQIDKALYREKIDPAAAMMNA  551
            + PT+ FR +V++G++IH+KN +L  A++NA+LK  N+ IQI+K+   +KIDP AA++NA
Sbjct  477  NVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINA  536

Query  552  HTGAMYHYKQEEFDW--NSYYESEEFT  576
               AM  +   E     N +Y SEEF+
Sbjct  537  YVFAMDYFTTTEGAKADNEFYTSEEFS  563

30) SpyM3_0946 in NC_004070


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  350 bits (1316),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 217/540 (41%), Positives = 367/540 (68%), Gaps = 6/540 (1%)

Query  21   YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG  80
            Y   V+  ++ ++KK+++AC RH++DL R   + F +V+  E+A+ +I+FIE+LP    G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  81   KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN  140
            K+  +  FQKFI+G+LYGWR K + + RRF +A  S++RKNGKT + +G+    ++  ++
Sbjct  63   KAIKMLGFQKFILGSLYGWRTK-EGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQE  121

Query  141  PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA  200
            P+ +RQ++  +N   QAK++ DM  + L ++      +R   KI+   +++L  +S+  A
Sbjct  122  PAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMA  181

Query  201  LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH  260
            L+ +T+++DGF P  ++LDE   +KT    +++ SG  Q  N ++ +ISTAG+DLNVPM 
Sbjct  182  LASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMY  241

Query  261  TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR  320
              EY  + ++L GE   + YF  + E D+ EEI D+ +WIK+NPI+E E +   ++  ++
Sbjct  242  E-EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  321  TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGR  380
                ++L   ++N VL+KNFN+WRQ+SE+SY+  + W+ ++++  D   + V +GVD+++
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  381  VSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESG  439
              DL ++S ++ +D+   Y DS SFVATKYGL  KEKRDG++Y +LE+ G C IT LESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  440  VIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNM  499
            ++D ++V++ I++++  N+ E  GIC+DPY+  +L++  EK  ++ P++EV Q T+ LN+
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEK--ANYPMLEVRQGTITLNV  478

Query  500  PTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA  559
            PT+ FR+++  G++ H+ N +LT AVNNA +KTDNNG++I+K+KNSNKIDP+ A +++Y 
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYV  538

31) SPs0909 in NC_004606


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  350 bits (1316),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 217/540 (41%), Positives = 367/540 (68%), Gaps = 6/540 (1%)

Query  21   YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG  80
            Y   V+  ++ ++KK+++AC RH++DL R   + F +V+  E+A+ +I+FIE+LP    G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  81   KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN  140
            K+  +  FQKFI+G+LYGWR K + + RRF +A  S++RKNGKT + +G+    ++  ++
Sbjct  63   KAIKMLGFQKFILGSLYGWRTK-EGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQE  121

Query  141  PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA  200
            P+ +RQ++  +N   QAK++ DM  + L ++      +R   KI+   +++L  +S+  A
Sbjct  122  PAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMA  181

Query  201  LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH  260
            L+ +T+++DGF P  ++LDE   +KT    +++ SG  Q  N ++ +ISTAG+DLNVPM 
Sbjct  182  LASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMY  241

Query  261  TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR  320
              EY  + ++L GE   + YF  + E D+ EEI D+ +WIK+NPI+E E +   ++  ++
Sbjct  242  E-EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  321  TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGR  380
                ++L   ++N VL+KNFN+WRQ+SE+SY+  + W+ ++++  D   + V +GVD+++
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  381  VSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESG  439
              DL ++S ++ +D+   Y DS SFVATKYGL  KEKRDG++Y +LE+ G C IT LESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  440  VIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNM  499
            ++D ++V++ I++++  N+ E  GIC+DPY+  +L++  EK  ++ P++EV Q T+ LN+
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEK--ANYPMLEVRQGTITLNV  478

Query  500  PTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA  559
            PT+ FR+++  G++ H+ N +LT AVNNA +KTDNNG++I+K+KNSNKIDP+ A +++Y 
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYV  538

32) SEQ_0820 in NC_012471


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  347 bits (1303),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 217/540 (41%), Positives = 363/540 (68%), Gaps = 6/540 (1%)

Query  21   YAKKVVDEEIKASKKVFKACLRHLNDLKKIDDDNFKFIYLPKKAIDPIIFIELLPDVKTG  80
            Y  KV+   + A+KK+++AC RH++DL +   D+F +++   +A  +I FIELLP    G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-G  62

Query  81   KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN  140
            K+  +  FQKFI+G+LYGWR K + + RRF +A  S++RKNGKT + +G+    ++  ++
Sbjct  63   KAIKMLGFQKFILGSLYGWRTK-EGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQE  121

Query  141  PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDADVRKATKIVRDELKNLHDESYIRA  200
            P+ +RQ++  +N   QAK++ DM  + L ++      +R   KI+   +++L  +S+  A
Sbjct  122  PAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMA  181

Query  201  LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH  260
            L+ +T+++DGF P  ++LDE   +KT    +++ SG  Q  N ++ +ISTAG+DLNVPM 
Sbjct  182  LASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMY  241

Query  261  TIEYPYITKILDEEIVDDGYFGYVAEQDNEGEIKDESNWIKSNPILEVEALHDKLMDYLR  320
              EY  + ++L  E   D YF  + E D+  EI D+ +WIK+NPI+E E +   ++  ++
Sbjct  242  E-EYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQ  300

Query  321  TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELARIDKPDTHKRRVWLGVDVGR  380
                ++L   ++N VL+KNFN+WRQ+SE+SY+  + W+ + ++  D   + V +GVD+++
Sbjct  301  DDVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSK  360

Query  381  VSDLFAITPVIMMDDF-WYIDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESG  439
              DL +++ ++ +D+   Y DS SFVATKYGL  KEKRDG++Y +LE+ G C IT LESG
Sbjct  361  TDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESG  420

Query  440  VIDDERVLEKIEEMVYSNDWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNM  499
            ++D ++V++ I++++  ND E  GIC+DPY+  +L++  EK  ++ P++EV Q T+ LN+
Sbjct  421  IVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEK--ANYPMLEVRQGTITLNV  478

Query  500  PTKQFRDDLKNGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA  559
            PT+ FR+++ +G++ H+ N +LT AVNNA +KTDNNG++I+K+KNSNKIDP+ A +++Y 
Sbjct  479  PTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYV  538

33) BAMF_3089 in NC_014551


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 249/568 (44%), Positives = 386/568 (68%), Gaps = 9/568 (1%)

Query  12   YAKKVVSGEITACKKVIKACQRHLRDLERAADPSFEYEYRPEKAKKVIKFLEILPDISTG  71
            Y  KV+SG + A KK+I+AC+RH+ DLER+   SF Y +  E+A K IKF+E+LP  + G
Sbjct  4    YIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPS-TDG  62

Query  72   KPTKLALFQKFIVYMLYAWRNKETGFRRFTKAYISMARKGGKSVLVAGLALYELIYGESP  131
            K+ K+  FQKFI+  LY+WR KE  +RRF +A+ SM+RK GK+ + +G+A   LI  + P
Sbjct  63   KAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEP  122

Query  132  KFDRQIYATANSRGQARTVFKMISMQLKKIRSQSKAIRKWTKIIQNEIRYLKDDCVIMPL  191
               RQ+   +N+  QA+  + M+S  L+++   SK +R   KI+++ I+ L  +   M+L
Sbjct  123  AEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMAL  182

Query  192  SRDTDNLDSLNVLIGILDEYHTASNTKMMEVLEssqgqqdqgliliisTAGFKLNGPMYS  251
            + +T  LD++    +ILDE H A   K  +V+ S+  QQ +GL+ +ISTAG+ LN PMY 
Sbjct  183  ASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMY-  241

Query  252  QEYPYVDDILSGRKENENYFAIVyeqddeeeiydeSTWIKSNPLLEVEGlqkklltnlrk  311
            +EY  +D +L G  + + YF  + E DD EEI D+  WIK+NP++E E ++K ++  ++ 
Sbjct  242  EEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQD  301

Query  312  klkealdkddlNGTLVKNFNLWQSASSESFVNGRDWKSCGVDTAPEIMGKPVYIGVDLSR  371
             ++ AL +++LN+ LVKNFNLW+ AS +S++ + DW++  V+ + +I GKPVYIGVDLS+
Sbjct  302  DVNLALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVE-PQDITGKPVYIGVDLSK  360

Query  372  TEDLSALSFIYPLEDEDETFYVDSHSFVGTKGGLDNKIERDKLDYRALSKAGYCTITDKK  431
            T+DL+++S I PL++ +  +Y DSHSFV+TK GL++K  RD L YR L KAG C+IT+  
Sbjct  361  TDDLTSVSWIVPLDNGE--LYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLE  418

Query  432  SGIINLQQVIDYMINHIQENDLQVEGIFYDPYNISLFLNEMEKYGYEDKLIEVRQGARTL  491
            SGI++ +QV++++ + IQENDL+  GI YDPYN + +++  EK  Y   ++EVRQG+ TL
Sbjct  419  SGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKANYP--MLEVRQGTITL  476

Query  492  SEPTKDFRLNVFDRKIIHSINPLLNTALHNAMVKKVNDTIQINKDLNREKIDPAAAMMNA  551
            + PT+ FR +V++ ++IH+ N +L  A++NA++K  N+ IQINK  N +KIDP AA++NA
Sbjct  477  NVPTRTFREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINA  536

Query  552  HTGAM--FHYKQDKFDWNTYYESEEFTL  577
               AM  F   ++    N +Y SEEF++
Sbjct  537  YVFAMDYFTTTEGAKADNEFYTSEEFSF  564

34) M6_Spy1011 in NC_006086


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  344 bits (1293),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 216/536 (41%), Positives = 365/536 (69%), Gaps = 6/536 (1%)

Query  25   VVDEQIKSSKKVFKACLRHLNDLKKIDGDNFKFIYLPEKAADPINFIEILPDVKTGKPYP  84
            V+  ++ ++KK+++AC RH++DL +  +D+F +++  E+A+ +I+FIE+LP    GK+  
Sbjct  8    VLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPSTD-GKAIK  66

Query  85   LAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMS  144
            +  FQKFI+G+LYGWR K + + RRF +A  S++RKNGKT + +G+    ++  ++P+ +
Sbjct  67   MLGFQKFILGSLYGWRTK-EGNYRRFNRAFTSMSRKNGKTYIASGMAANALIMEQEPAEA  125

Query  145  RQLFCTANDRTQAKIAWDMAKKQLSSLRAKDADVRKATKIVRDELKNLHDESYIRALSRD  204
            RQ++  +N   QAK++ DM  + L ++      +R   KI+   +++L  +S+  AL+ +
Sbjct  126  RQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQHLPSNSFAMALASE  185

Query  205  TGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEY  264
            T+++DGF P  ++LDE   +KT    +++ SG  Q  N ++ +ISTAG+DLNVPM   EY
Sbjct  186  TSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNVPMYE-EY  244

Query  265  PYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRR  324
              + ++L GE   + YF  + E D+ EEI D+ +WIK+NPI+E E +   ++  ++    
Sbjct  245  LLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPTIQDDVN  304

Query  325  VSLETGEINKVLIKNFNMWRQSSEESYIDKTTWELARIDKPDTNKRRVWLGVDVGRVSDL  384
            ++L   ++N VL+KNFN+WRQ+SE+SY+    W+ + ++  D   + V +GVD+++  DL
Sbjct  305  LALKQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVDLSKTDDL  364

Query  385  FAITPVVMMDDF-WYIDSFSFVATKYGLTAKEKRDGVSYSNLECQGYCEITTLESGVIDD  443
             +++ +V +D+   Y DS SFVATKYGL  KEKRDG++Y +LE  G C IT LESG++D 
Sbjct  365  TSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQLESGIVDY  424

Query  444  ERVLEKIEEMVYSNDWEINGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQ  503
            ++V++ I++++  ND E  GIC+DPY+  +L++  EK  ++ P++EV Q T+ LN+PT+ 
Sbjct  425  DQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEK--ANYPMLEVRQGTITLNVPTRT  482

Query  504  FRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA  559
            FR+++  G++ H+ N +LT AVNNA +KTDNNG++I+K+KNSNKIDP+ A +++Y 
Sbjct  483  FREQVYEGNVIHNKNTILTHAVNNAILKTDNNGIQINKSKNSNKIDPIAALINAYV  538

35) SAOV_1931c in NC_017337


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  339 bits (1272),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 232/575 (41%), Positives = 374/575 (66%), Gaps = 26/575 (4%)

Query  5    VTQYAKKVVSGEILASQKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIEFVEMLPDP  61
            + +Y  KV+SG ++A++K IQ C RH+S +E + ++      D++ + KAI F+E+LP  
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  62   KTNEPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
              + ++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  61   DGK-AIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDILSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  IKSDIQDELEKGTSYHKILIKNFNLWQAQREDSLLDIEDWEQATTNMPNINGKDVYIGVD  358
            I+ D++  L K  + + +L+KNFNLW+   EDS +  EDW+ +  +  +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDNKKVFLHSHSFIGLRTNLEQKAKRDKINYDLVIERGEADVTRS  418
            LS+ DDLTSV+ I P DN  ++ +SHSF++ +  L++K KRD + Y  +   GE  +T+ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIMDFITTHDLNVKAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI D+I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADKRIQHNDNTLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN NT+LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAF---------TEARMHEFQENWAEIYESEEFGF  564
             A+         TE+   +      E+Y SEEF+F
Sbjct  535  NAYVFAMDYFTTTEGAKAD-----NEFYTSEEFSF  564

36) SAAV_0855 in NC_013450


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  338 bits (1268),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 232/575 (41%), Positives = 373/575 (65%), Gaps = 26/575 (4%)

Query  5    VTQYAKKVVSGEILASQKNIQVCKRHLSFIENP---PIGCHWDNRLSNKAIEFVEMLPDP  61
            + +Y  KV+SG ++A++K IQ C RH+S +E +   ++    D+  + KAI F+E+LP  
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLPST  60

Query  62   KTNEPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
              + ++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  61   DGK-AIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDILSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  IKSDIQDELEKGTSYHKILIKNFNLWQAQREDSLLDIEDWEQATTNMPNINGKDVYIGVD  358
            I+ D++  L K  + + +L+KNFNLW+   EDS +  EDW+ +  +  +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDNKKVFLHSHSFIGLRTNLEQKAKRDKINYDLVIERGEADVTRS  418
            LS+ DDLTSV+ I P DN  ++ +SHSF++ +  L++K KRD + Y  +   GE  +T+ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIMDFITTHDLNVKAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI D+I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADKRIQHNDNTLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN NT+LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAF---------TEARMHEFQENWAEIYESEEFGF  564
             A+         TE+   +      E+Y SEEF+F
Sbjct  535  NAYVFAMDYFTTTEGAKAD-----NEFYTSEEFSF  564

37) MS7_2000 in NC_017351


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  331 bits (1242),  Expect = 8e-92, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 367/571 (65%), Gaps = 18/571 (3%)

Query  5    VTQYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            + +Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564

38) SAAG_01363 in NC_022113


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  330 bits (1239),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 366/571 (65%), Gaps = 18/571 (3%)

Query  5    VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            +  Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564

39) BN843_20070 in NC_021059


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  330 bits (1239),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 366/571 (65%), Gaps = 18/571 (3%)

Query  5    VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            +  Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564

40) SAS1891 in NC_002953


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  330 bits (1239),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 366/571 (65%), Gaps = 18/571 (3%)

Query  5    VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            +  Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564

41) MW1908 in NC_003923


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  330 bits (1239),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 366/571 (65%), Gaps = 18/571 (3%)

Query  5    VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            +  Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564

42) SAOUHSC_02196 in NC_007795


> NC_017960_P1|6|G6|389869313|YP_006376736.1|Enterococcus_faecium_DO|-|3509..5203|-|HMPREF0351_12130|bacteriophage 
terminase 
large subunit
Length=564

 Score =  330 bits (1239),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 230/571 (41%), Positives = 366/571 (65%), Gaps = 18/571 (3%)

Query  5    VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGC---HWDNHLSNKAIKFVEMLPDP  61
            +  Y  KV+SG ++A+ K IQ C RH+S +E + ++      D++ + KAIKF+E+LP +
Sbjct  1    MNDYIEKVLSGKLIAPKKIIQACERHISDLERSKSDSFPYVFDEEQATKAIKFIELLP-S  59

Query  62   KTNQPMPLMEFQKFIVGSLYGWRR--GQYRMFTKAYISMARKQGKSLIVSGMSVNELLFG  119
               +++ ++ FQKFI+GSLYGWR   G+YR F +A+ SM+RK+GK+ I SGM+ N L+  
Sbjct  60   TDGKAIKMLGFQKFILGSLYGWRTKEGNYRRFNRAFTSMSRKNGKTYIASGMAANALIME  119

Query  120  QYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVF  179
            Q P   RQ+   S++ KQA+  + M S+ +  +   SKF+R +  + ++ I++ L+S+ F
Sbjct  120  QEPAEARQVLFVSNALKQAKLGYDMLSNSLRNVVKSSKFLRPQLKIMNSKIQH-LPSNSF  178

Query  180  A-PLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNS  238
            A +L+++  ++DG  PT AILDE         Y+ +K+GMT QKN L  ++STAG +LN 
Sbjct  179  AMALASETSTLDGFAPTTAILDEWHEAKTRKTYNVIKSGMTQQKNGLLCVISTAGLDLNV  238

Query  239  QMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQN  298
             MY+EY  + R+L+ E +AD YF+   E+D  EE++D+ KWIKA P++ES E +K ++  
Sbjct  239  PMYEEYLLLDRVLKGEEQADRYFIAIWELDDPEEIHDQEKWIKANPIFESEEIKKVMIPT  298

Query  299  VKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVD  358
            ++ D++  L K  + + +L+KNFNLW+   EDS +   DW+       +I GK VYIGVD
Sbjct  299  IQDDVNLAL-KQNNLNSVLVKNFNLWRQASEDSYMIAEDWQATEVEPQDITGKPVYIGVD  357

Query  359  LSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQS  418
            LS+ DDLTSV+ I P D+  ++ +SHSF++ +  L++K KRD + Y      GE   TQ 
Sbjct  358  LSKTDDLTSVSWIVPLDNGELYCDSHSFVATKYGLQDKEKRDGLPYRELEKAGECSITQL  417

Query  419  DSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKA  478
            +SG++DY QV++FI  +I  +DL+  ++CYDP NA+S+I+  E    + P++EV Q+  +
Sbjct  418  ESGIVDYDQVFQFIQDLIQENDLECMGICYDPYNANSLISKAEKA--NYPMLEVRQGTIT  475

Query  479  LSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISII  538
            L+ + + FR  V +  + HN N +LT +VNNA+L + +++ ++INK  N +KIDPI ++I
Sbjct  476  LNVPTRTFREQVYEGNVIHNKNTILTHAVNNAIL-KTDNNGIQINKSKNSNKIDPIAALI  534

Query  539  TAFTEARMHEFQENWTEK-----YESEEFGF  564
             A+  A M+ F      K     Y SEEF+F
Sbjct  535  NAYVFA-MDYFTTTEGAKADNEFYTSEEFSF  564