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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of EF611303

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PSPA7_0080
( YP_001345476.1 )

helicase domain-containing protein

NC_009656
(Pseudomonas aeruginosa PA7)

0.0

2) H681_04380
( YP_007656296.1 )

helicase domain-containing protein

NC_020829
(Pseudomonas denitrificans ATCC 13867)

0.0

3) Psest_3410
( YP_007241530.1 )

DNA/RNA helicase

NC_019936
(Pseudomonas stutzeri RCH2)

3e-176

4) PSTAA_0895
( YP_005937547.1 )

helicase domain-containing protein

NC_017532
(Pseudomonas stutzeri DSM 4166)

7e-176

5) A458_17895
( YP_006459227.1 )

helicase domain-containing protein

NC_018028
(Pseudomonas stutzeri CCUG 29243)

3e-154

6) PST_0650
( YP_001171198.1 )

type III restriction enzyme, res subunit

NC_009434
(Pseudomonas stutzeri A1501)

2e-130

7) Maqu_2283
( YP_959548.1 )

type III restriction enzyme, res subunit

NC_008740
(Marinobacter aquaeolei VT8)

2e-105

8) Sputcn32_3839
( YP_001185344.1 )

type III restriction enzyme, res subunit

NC_009438
(Shewanella putrefaciens CN-32)

8e-105

9) Shew185_4273
( YP_001368451.1 )

type III restriction protein res subunit

NC_009665
(Shewanella baltica OS185)

1e-103

10) Sbal195_4412
( YP_001556829.1 )

type III restriction protein res subunit

NC_009997
(Shewanella baltica OS195)

1e-103

11) Sbal678_4442
( YP_005275618.1 )

type III restriction protein res subunit

NC_016901
(Shewanella baltica OS678)

1e-103

12) Sfri_3418
( YP_752093.1 )

type III restriction enzyme, res subunit

NC_008345
(Shewanella frigidimarina NCIMB 400)

1e-103

13) Shal_0521
( YP_001672755.1 )

type III restriction protein res subunit

NC_010334
(Shewanella halifaxensis HAW-EB4)

3e-103

14) TOL_3398
( YP_007684024.1 )

DNA/RNA helicase, superfamily II

NC_020888
(Thalassolituus oleivorans MIL-1)

5e-103

15) swp_1004
( YP_002310394.1 )

Helicase:Type III restriction enzyme, res subunit

NC_011566
(Shewanella piezotolerans WP3)

3e-102

16) Swoo_4016
( YP_001762367.1 )

type III restriction protein res subunit

NC_010506
(Shewanella woodyi ATCC 51908)

1e-101

17) Spea_1893
( YP_001501750.1 )

type III restriction protein res subunit

NC_009901
(Shewanella pealeana ATCC 700345)

3e-101

18) Spea_3459
( YP_001503307.1 )

type III restriction protein res subunit

NC_009901
(Shewanella pealeana ATCC 700345)

3e-101

19) Sbal223_4198
( YP_002360087.1 )

helicase domain-containing protein

NC_011663
(Shewanella baltica OS223)

3e-99

20) Ping_0145
( YP_941613.1 )

type III restriction enzyme, res subunit

NC_008709
(Psychromonas ingrahamii 37)

1e-98

21) Ping_2555
( YP_943875.1 )

hypothetical protein

NC_008709
(Psychromonas ingrahamii 37)

6e-98

22) amad1_21393
( YP_006979071.1 )

hypothetical protein

NC_019394
(Alteromonas macleodii AltDE1)

2e-93

23) I607_20102
( YP_008174013.1 )

hypothetical protein

NC_021711
(Alteromonas macleodii Ionian Sea U4)

2e-93

24) I635_21394
( YP_008198428.1 )

hypothetical protein

NC_021718
(Alteromonas macleodii Ionian Sea UM7)

2e-93

25) Sde_1925
( YP_527397.1 )

type III restriction enzyme, res subunit

NC_007912
(Saccharophagus degradans 2-40)

2e-90

26) CJA_1848
( YP_001982323.1 )

hypothetical protein

NC_010995
(Cellvibrio japonicus Ueda107)

3e-90

27) Shewmr7_3891
( YP_739925.1 )

helicase domain-containing protein

NC_008322
(Shewanella sp. MR-7)

5e-89

28) Maqu_0197
( YP_957490.1 )

helicase domain-containing protein

NC_008740
(Marinobacter aquaeolei VT8)

4e-88

29) M5M_02975
( YP_006915536.1 )

type III restriction protein res subunit

NC_018868
(Simiduia agarivorans SA1)

4e-84

30) MRBBS_3847
( YP_006560196.1 )

helicase domain-containing protein

NC_018268
(Marinobacter sp. BSs20148)

1e-78

• Sequence Alignments

1) PSPA7_0080 in NC_009656


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  688 bits (2602),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/466 (88%), Positives = 442/466 (95%), Gaps = 0/466 (0%)

Query  1    MSSSLRSWQNSCITRALEHFTVTPHFFCQATPGAGKTRMAAELAIRLLEQDRIDLVLCFA  60
            MS SLRSWQNSCIT+ALEH+TVT HFFCQATPGAGKTRMAAEL+ RLL+QDRIDLVLCFA
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFA  60

Query  61   PSCQVVEGFRSTFAAVLGRRLDGQIGAVGAAYTYQAMEYRDEGFWQLLDDYRVFVVFDEI  120
            PSCQVVEGFRSTF+ VLGRRLDGQ+GAVGAAYTYQAMEYRDEGFWQLLDDYRV+VVFDEI
Sbjct  61   PSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEI  120

Query  121  HHCAGHDPLLSNAWGQQILHRIQDRAAFTLALSGTPWRSDDKAIALARYSSPEGHLICDY  180
            HHCAGHDPLLSNAWGQQILHRIQDRA FTLALSGTPWRSDDKAIALARYSSPEGHLICDY
Sbjct  121  HHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDY  180

Query  181  RYGLKDAIADDVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR  240
            RYGLKDAIAD+VCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR
Sbjct  181  RYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR  240

Query  241  HDEVINPILDLGCSKLNELRQIKPDAAGLVVATDIEHAQQVVLALEAMGEECRIVTNKTP  300
            HD+VINPILDLG SKLNELRQIKPDAAGLVVATDIEHAQQ+  ALE+MGEECRIVTNKTP
Sbjct  241  HDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTP  300

Query  301  DAQQVINAFRSSACRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360
            DAQQVINAFRS++CRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE
Sbjct  301  DAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360

Query  361  SDDQAWLFMLAEPTLQSFAERIADDLPDDLAVLNEVQMPASTSGSKAGLIGAAGNIDGLD  420
            SDDQAWLFMLAEP LQ+FAERIADDLPDDLAVL +VQMP+  ++S++  +GA+G++ G++
Sbjct  361  SDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  421  DSMKIGVEQVIGADTANIVSLGGGAAGPSYQVSFSQHYRQQLLACF  466
            D+   G E  IG++++NI+SLGG A  P+YQVSFSQHYRQQLLACF
Sbjct  421  DAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

2) H681_04380 in NC_020829


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  687 bits (2599),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 408/466 (88%), Positives = 442/466 (95%), Gaps = 0/466 (0%)

Query  1    MIRALRDWQFSCINLALEHFTVTPNFFCQATPGAGKTRMAAELASRLLEQGKIDLVLCFA  60
            M R+LR WQ SCI  ALEH+TVT +FFCQATPGAGKTRMAAEL+SRLL+Q++IDLVLCFA
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFA  60

Query  61   PSCQVVEGFRSTFAAVLGRRLDGRIGAVGAAFTYQAMEYRDEGFWQLLDDYRVLVVFDEI  120
            PSCQVVEGFRSTF+ VLGRRLDG++GAVGAA+TYQAMEYRDEGFWQLLDDYRVLVVFDEI
Sbjct  61   PSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEI  120

Query  121  HHCAGHDPLLSNAWGQQILHRIQDRAAFTLALSGTPWRSDDRAIALARYSTPEGQLICDY  180
            HHCAGHDPLLSNAWGQQILHRIQDRA FTLALSGTPWRSDD+AIALARYS+PEG+LICDY
Sbjct  121  HHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDY  180

Query  181  RYGLKEAIADGVCRSPRIVLLDNQKVKLTEEFGADSSVRLFPSIAKLLGESPVTYEELLR  240
            RYGLK+AIADGVCRSPRIVLLDNQKVKLTEE+GADSSVRLFPSIAKLLGESPVTYEELLR
Sbjct  181  RYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR  240

Query  241  HDEVINPILDLGCSKLNELRQIKPDAAGLVVATDIDHAQQIAVTLEAMGEECRIVTNKTP  300
            HD+VINPILDLG SKLNELRQIKPDAAGLVVATDI+HAQQIA +LE+MGEECRIVTNKTP
Sbjct  241  HDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTP  300

Query  301  DVQQVINAFRSSASRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360
            D QQVINAFRS++ RWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE
Sbjct  301  DAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360

Query  361  SDDQAWLFMLAEPALQGFAERIADDLPDDLAVLSDVLMPGLTAGSRPESIGDFDHIEGTN  420
            SDDQAWLFMLAEP LQGFAERIADDLPDDLAVL DV MPG+ ++SRPE++G  +H+ G  
Sbjct  361  SDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  421  GADVGDAESGIGSQAVNIISLVGFAAEPAYQVSFSQHYRQQLLACF  466
            +A++G+AE+GIGSQA NIISL GFA EPAYQVSFSQHYRQQLLACF
Sbjct  421  DAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

3) Psest_3410 in NC_019936


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  611 bits (2308),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 360/466 (78%), Positives = 414/466 (89%), Gaps = 2/466 (0%)

Query  1    MTSSLRDWQRRCINTALEHFLSTSHFFCQATPGAGKTRMAAELARNLLDQGRIDLVLCFA  60
            M+ SLR WQ  CI  ALEH+  T HFFCQATPGAGKTRMAAEL+  LL+Q+RIDLVLCFA
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFA  60

Query  61   PSCQVVEGFRSTFMAVLGRRLDGQLGAVGAAYTYQAMDYREEAFWQLLDDYRVFVVFDEI  120
            PSCQVVEGFRSTF  VLGRRLDGQ+GAVGAAYTYQAM+YR+E+FWQLLDDYRV+VVFDEI
Sbjct  61   PSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEI  120

Query  121  HHCAGHDPLLSNAWGQQILQRVQDRAACTLALSGTPWRSDDRAIALARYSSPEGQLICDF  180
            HHCAGHDPLLSNAWGQQIL+R+QDRA  TLALSGTPWRSDD+AIALARYSSPEG+LICD+
Sbjct  121  HHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDY  180

Query  181  RYGLKEAIADGVCRSPRIVLLDNQQVKLTEELQAESTVRLFPSIAKLLGESPVTYEELLR  240
            RYGLK+AIADGVCRSPRIVLLDNQ+VKLTEEL A+S+VRLFPSIAKLLGESPVTYEELLR
Sbjct  181  RYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR  240

Query  241  HDEVIDQLLILGRAKLDVLRQIKPDAAGLVVSTDIEHARQIAQALEAMGESCQIVTNRTP  300
            HD+VI+ +L LG +KL+ LRQIKPDAAGLVV+TDIEHA+QIAQALE+MGE C+IVTN+TP
Sbjct  241  HDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTP  300

Query  301  DAQQLINTFRHSDCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRKDG  360
            DAQQ+IN+FR + CRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRR + 
Sbjct  301  DAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360

Query  361  SDDQAWLFMLAEPTLRRFAERIADDLPDDMAVL-SVQVPD-PASGSAIGWSGLGFNEGER  418
            SDDQAWLFMLAEP L+ FAERIADDLPDD+AVL  VQ+P+  + + +   ++ G   G  
Sbjct  361  SDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  419  ADGEPDGEQVLDASVENVVSLDGLADGPTYQVSFSQHYRQQLLACY  464
              G  ++E  +++   N++SL+G+A+ P+YQVSFSQHYRQQLLAC+
Sbjct  421  DAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

4) PSTAA_0895 in NC_017532


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  609 bits (2302),  Expect = 7e-176, Method: Compositional matrix adjust.
 Identities = 365/470 (78%), Positives = 420/470 (90%), Gaps = 10/470 (2%)

Query  1    MTSSLRDWQRRCINTALEHFLSTSHFFCQATPGAGKTRMAAELARNLLDQGRIDLVLCFA  60
            M+ SLR WQ  CI  ALEH+  T HFFCQATPGAGKTRMAAEL+  LL+Q+RIDLVLCFA
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFA  60

Query  61   PSCQVVEGFRSTFMAVLGRRLDGQLGAVGAAYTYQAMDYREEAFWQLLDDYRVFVVFDEI  120
            PSCQVVEGFRSTF  VLGRRLDGQ+GAVGAAYTYQAM+YR+E+FWQLLDDYRV+VVFDEI
Sbjct  61   PSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEI  120

Query  121  HHCAGHDPLLSNAWGQQILQRVQDRAACTLALSGTPWRSDDRAIALARYSSPEGQLICDF  180
            HHCAGHDPLLSNAWGQQIL+R+QDRA  TLALSGTPWRSDD+AIALARYSSPEG+LICD+
Sbjct  121  HHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDY  180

Query  181  RYGLKEAIADGVCRSPRIVLLDNQQVKLTEELQAESTVRLFPSIAKLLGESPVTYEELLR  240
            RYGLK+AIADGVCRSPRIVLLDNQ+VKLTEEL A+S+VRLFPSIAKLLGESPVTYEELLR
Sbjct  181  RYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLR  240

Query  241  HDEVIDQLLILGRAKLDMLRQIKPDAAGLVVSTDIEHAQQIAHALEAMGESCQIVTNRTP  300
            HD+VI+ +L LG +KL+ LRQIKPDAAGLVV+TDIEHAQQIA+ALE+MGE C+IVTN+TP
Sbjct  241  HDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTP  300

Query  301  DAQQLINRFRHSDCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRKDE  360
            DAQQ+IN FR + CRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRR +E
Sbjct  301  DAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360

Query  361  SDDQAWLFMLAEPTLRRFAGRIADDLPDDLAVL-SVQVPDPASDS---AIGWPGL--GFN  414
            SDDQAWLFMLAEP L+ FA RIADDLPDDLAVL  VQ+P+  +DS   ++G +G   G+ 
Sbjct  361  SDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  415  EGGRAGGKPDNEQVHDASVANVVSLDGLADRPTYQVSFSQHYRQQLLACY  464
            ++G +G+ P+     ++  +N++SL+G+A+ P+YQVSFSQHYRQQLLAC+
Sbjct  421  DAGLGGAEPGI----GSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

5) A458_17895 in NC_018028


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  537 bits (2028),  Expect = 3e-154, Method: Compositional matrix adjust.
 Identities = 312/415 (76%), Positives = 368/415 (89%), Gaps = 3/415 (0%)

Query  14   KIDLILCFAPSCQVVEGFRTTFMNVLGRRLDGHLGSVGAAYTYQAMDYRDEAFWRLLDDY  73
            +IDL+LCFAPSCQVVEGFR+TF +VLGRRLDG++G+VGAAYTYQAM+YRDE+FW+LLDDY
Sbjct  52   RIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDY  111

Query  74   RVFVVFDEIHHCAGNDQLLSNAWGQQILQRIQDRAAFTLALSGTPWRSDDRAIAMARYSS  133
            RV+VVFDEIHHCAG+D LLSNAWGQQIL+RIQDRA FTLALSGTPWRSDD+AIA+ARYSS
Sbjct  112  RVLVVFDEIHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSS  171

Query  134  PEGQLICDYRYGLKEAIADGVCRAPRIVLLDNQKVRLTEALESDSTVRLFPSIAMLLGES  193
            PEG+LICDYRYGLK+AIADGVCR+PRIVLLDNQKV+LTE L +DS+VRLFPSIA LLGES
Sbjct  172  PEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGES  231

Query  194  PVTFEELLRHDDVINQLLGLGCEKLDELRRIKPDAAGLVVATDIEHAQQIAYALEAIGES  253
            PVT+EELLRHDDVIN +L+LG  KL+ELR+IKPDAAGLVVATDIEHAQQIA ALE++GE 
Sbjct  232  PVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEE  291

Query  254  CRVVTNRTPDAQRVINAFRHRDCRWIVAVGMISEGTDIPRLQVCCHLSRIRTELHYRQVL  313
            CR+VTN+TPDAQ+VINAFR   CRWIVAVGMISEGTDIPRLQVCC LSRIRTELHYRQVL
Sbjct  292  CRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVL  351

Query  314  GRILRRTGEPDIDAWLFTLAEPTLRQFAERIADDLPEDLAVLSQVEIPVLPDGALT---A  370
            GR+LRRTGE+D +AWLF LAEP L+ FAERIADDLP+DLAVL +V++P +  ++     +
Sbjct  352  GRVLRRTGESDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMG  411

Query  371  GTGVVDETDQSVDQVAGQGLVAAKAGVLSLGDGVTWPSYQLSFSQHYRQVLLACF  425
            ++G V   +++    A  G+ +  + ++SLG+    P+YQ+SFSQHYRQ LLACF
Sbjct  412  ASGHVKGIGDAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

6) PST_0650 in NC_009434


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  458 bits (1726),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 258/338 (77%), Positives = 308/338 (92%), Gaps = 0/338 (0%)

Query  1    MAAELARSLLQQGKIDLVLCFAPSCQVVDGFRTTFSQVLGQRLDGLIGAVGDVCTYQGME  60
            MAAEL+  LLQQ++IDLVLCFAPSCQVV+GFR+TFS+VLG+RLDG +GAVG   TYQ+ME
Sbjct  39   MAAELTSRLLQQDRIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAME  98

Query  61   HRTEAFWKLFDEYRVFAVFDEIHHCAGHDPLLSNAWGQQILQRVQDQAAFTLALSGTPWR  120
             R E+FW+L+D+YRV+ VFDEIHHCAGHDPLLSNAWGQQIL+R+QD+A FTLALSGTPWR
Sbjct  99   YRDEGFWQLLDDYRVLVVFDEIHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWR  158

Query  121  SDDRGIALARYSNPEGRLICDYRYGLREAVADGVCRSPRIVLLDNHNVKLTEELENDSST  180
            SDD++IALARYS+PEG+LICDYRYGL++A+ADGVCRSPRIVLLDN++VKLTEEL  DSS 
Sbjct  159  SDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSV  218

Query  181  QVFPSIATLLRGSPVSYEDLLCHDGLLNQLLGLGIEKLDEVRAIKPDAAGLVVATNIEHA  240
            ++FPSIA LL  SPV+YE+LL HD+++N +L+LG  KL+E+R IKPDAAGLVVAT+IEHA
Sbjct  219  RLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHA  278

Query  241  RQVALALAARGESYRVVTNKTADAQQVINEFKSSSCRWIVAVGMISEGTDIPRLQVCCYL  300
            +Q+A AL + GE  R+VTNKT+DAQQVIN F+S++CRWIVAVGMISEGTDIPRLQVCCYL
Sbjct  279  QQIAQALETMGEECRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYL  338

Query  301  SRIRTELHYRQVLGRVLRRTGSTDNLAWLFVLAEPTLE  338
            SRIRTELHYRQVLGRVLRRTG +D+ AWLF+LAEP L+
Sbjct  339  SRIRTELHYRQVLGRVLRRTGESDDQAWLFMLAEPKLQ  376

7) Maqu_2283 in NC_008740


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  375 bits (1411),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 219/468 (47%), Positives = 336/468 (72%), Gaps = 16/468 (3%)

Query  4    LRAWQAECIEKALATFQRQTHFFCHATPGAGKTVMVALVAKALFQQDKIDFVLCFSPSRA  63
            LR+WQ  CI KAL  +    HFFC+ATPGAGKT M A ++  L+QQD+ID+VLCF+PS  
Sbjct  5    LRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSCQ  64

Query  64   IAEGVASAFSQILGRSFNGQIGAAGGSYTYQSMYTLPEELWQVLREHRVLVVLDEIHHCS  123
            + EG  S+FS++LGR ++GQ+GA G++YTYQ+M    E +WQ+L + RVLVV+DEIHHC+
Sbjct  65   VVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHCA  124

Query  124  GIVWGNSPTGNRWGRTILDKVQGKASYTMALSGTPWRTDDSPIVLSQYTKSTGQIHCDYE  183
            G    ++  +N WG+ IL+++Q++A +T+ALSGTPWR+DD +I L++Y+ + G++ CDY 
Sbjct  125  G---HDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYR  181

Query  184  YGLQKAISDSVCRAPKIVLTDNREISLS---SADFGLKTFASISDSLKNEHITYPDFLFR  240
            YGL+ AI+D+VCR+P+IVL DN+ + L+   +AD +++ F+SI+  L +  +TY ++L +
Sbjct  182  YGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRH  241

Query  241  DAVIDQLLSEASARLTSIRKHTPLAGGLVVAASVSHAEQIARRLALAGEHPIIVTYQTPE  300
            D VI+ +L  + ++L  +R+  P A+GLVVA+ + HA+QIA+ L   GE+  IVT +TP+
Sbjct  242  DDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTPD  301

Query  301  AQRMISNFKTSSDRWIVSVGMISEGTDIPRLQVCCHLSRIRTELHFRQVLGRILRRQPTD  360
            AQ++I+ F++++ RWIV+VGMISEGTDIPRLQVCC LSRIRTELH+RQVLGR+LRR  T+
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRR--TG  359

Query  361  PADTSAWLYMLAEPNLAEFARKIGEDLPGKKVV-------SFIPDLKTRGTQESKAMKCV  413
             +D  AWL+MLAEP+L  FA +I++DLP+   V       +F PD +      S  +K +
Sbjct  360  ESDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGI  419

Query  414  HDDKFVFTLDPDEQVSVEYSGLSSETPKEEEIDLRISNQYWNEVLALF  461
             D  +  +       + +  +L++  ++E   ++ +S++Y++++LA F
Sbjct  420  GDAGLGGAEPGIGSQATNIISLGG-FANEPAYQVSFSQHYRQQLLACF  466

8) Sputcn32_3839 in NC_009438


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  373 bits (1403),  Expect = 8e-105, Method: Compositional matrix adjust.
 Identities = 210/473 (45%), Positives = 335/473 (71%), Gaps = 19/473 (4%)

Query  3    LRQWQSECVKRALRHFHGAHKHFLCLATPGAGKSTMAAEVAAKLFEDDLIDFVLCFSPSV  62
            LR WQ+ C+ +AL H+  ++ HF+C ATPGAGK+ MAAE++++L+++D ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGMKQTFSSRLSCRFDGVIGSVGCSYTYQGMLAFKED-FWQLLRRNRVLVVFDEIHH  121
            ++ +G + TFS  L+ R+DG +G+VG +YTYQ+M  ++++ FWQLL   RVLVVFDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGRSLEDANAWGEEILLNIQAQAQYTLALTGTPWRSDQAPIVLSRYIDPDNQIQCDYVY  181
            CAG+    +NAWG++IL  IQ +A +TLAL+GTPWRSD+ +I L+RY  P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVAESVCRSPHIVLIDNDKISVTDE---ENETKTYRSLDELLKSSSISYQSIIENH  238
            GLK+A+A++VCRSP+IVL+DN+K+ +T+E   ++  + + S+  LL  S+++Y+ ++ ++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  EAIQYILTLATNKLKAIKQSNPNAAGLIVASSVSHAADILNTLKNEFNETAQIVTYKEDD  298
            + I+ IL L+ +KL+ ++Q +P+AAGL+VA+ + HA +I ++L +   E  +IVT K  D
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  299  PSAKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRTNDSL  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR  +  
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQQAWLYTFAEPKLVEFASRIAEEIPDIPVIFSEPIEINLKQELPEFHDMSVKTLPPTNS  418
            ++QAWL+ +AEPKL  FA RIA+++PD   ++ +        ++P F+  S      +++
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDV-------QMPGFNPDSRPEPMGASG  414

Query  419  NILNIGRQYLDKQTKSYSAE----IFLGENFGTSTSLSFELLGGFREKVVSTF  467
            ++  IG   L+    + +++    I LG  F+   +    +   +R+++++ F
Sbjct  415  HVKGIGDAGLGGAEPGIGSQATNIISLG-GFANEPAYQVSFSQHYRQQLLACF  466

9) Shew185_4273 in NC_009665


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  370 bits (1389),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 202/394 (52%), Positives = 301/394 (77%), Gaps = 7/394 (1%)

Query  3    LRQWQSECVKRALRHFHGAHRHFLCLATPGAGKSIMAAEVAAKLFEDDLIDFVLCFSPSV  62
            LR WQ+ C+ +AL H+  ++ HF+C ATPGAGK+ MAAE++++L+++D ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGMKQTFSSRLSCRFDGVIGSVGCSYTYQGMLAFKED-FWQLLKRNRVLVIFDEIHH  121
            ++ +G + TFS  L+ R+DG +G+VG +YTYQ+M  ++++ FWQLL   RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGSSLEDANAWGEEILLNIQDQAQYTLALTGTPWRSDQAPIVLSRYTDPDNQIQCDYVY  181
            CAG     +NAWG++IL  IQD+A +TLAL+GTPWRSD+ +I L+RY+ P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVADGVCRSPRIVLIDNDKILVTDE---ENETKTYSCLDDLFKCSSVSYQSIIKNH  238
            GLK+A+ADGVCRSPRIVL+DN+K+ +T+E   ++  + ++ +  L+  S+V+Y+ +++++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  EAIRHTLALATDKLGMIKQSNPNAAGLIVASSISHAAYIFNMLKTDFSETTQIVTYKEDD  298
            + I   L L+  KL  ++Q +P+AAGL+VA+ I HA  I + L T  +E  +IVT K  D
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNKTPD  301

Query  299  PSLKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRTNDST  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR  + +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQQAWLYTFAEPKLVEFANRIAEEIPDIPVLFRE  392
            ++QAWL+ +AEPKL  FA+RIA+++PD   ++R+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRD  395

10) Sbal195_4412 in NC_009997


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  370 bits (1389),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 202/394 (52%), Positives = 301/394 (77%), Gaps = 7/394 (1%)

Query  3    LRQWQSECVKRALRHFHGAHRHFLCLATPGAGKSIMAAEVAAKLFEDDLIDFVLCFSPSV  62
            LR WQ+ C+ +AL H+  ++ HF+C ATPGAGK+ MAAE++++L+++D ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGMKQTFSSRLSCRFDGVIGSVGCSYTYQGMLAFKED-FWQLLKRNRVLVIFDEIHH  121
            ++ +G + TFS  L+ R+DG +G+VG +YTYQ+M  ++++ FWQLL   RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGSSLEDANAWGEEILLNIQDQAQYTLALTGTPWRSDQAPIVLSRYTDPDNQIQCDYVY  181
            CAG     +NAWG++IL  IQD+A +TLAL+GTPWRSD+ +I L+RY+ P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVADGVCRSPRIVLIDNDKILVTDE---ENETKTYSCLDDLFKCSSVSYQSIIKNH  238
            GLK+A+ADGVCRSPRIVL+DN+K+ +T+E   ++  + ++ +  L+  S+V+Y+ +++++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  EAIRHTLALATDKLGMIKQSNPNAAGLIVASSISHAAYIFNMLKTDFSETTQIVTYKEDD  298
            + I   L L+  KL  ++Q +P+AAGL+VA+ I HA  I + L T  +E  +IVT K  D
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNKTPD  301

Query  299  PSLKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRTNDST  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR  + +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQQAWLYTFAEPKLVEFANRIAEEIPDIPVLFRE  392
            ++QAWL+ +AEPKL  FA+RIA+++PD   ++R+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRD  395

11) Sbal678_4442 in NC_016901


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  370 bits (1389),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 202/394 (52%), Positives = 301/394 (77%), Gaps = 7/394 (1%)

Query  3    LRQWQSECVKRALRHFHGAHRHFLCLATPGAGKSIMAAEVAAKLFEDDLIDFVLCFSPSV  62
            LR WQ+ C+ +AL H+  ++ HF+C ATPGAGK+ MAAE++++L+++D ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGMKQTFSSRLSCRFDGVIGSVGCSYTYQGMLAFKED-FWQLLKRNRVLVIFDEIHH  121
            ++ +G + TFS  L+ R+DG +G+VG +YTYQ+M  ++++ FWQLL   RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGSSLEDANAWGEEILLNIQDQAQYTLALTGTPWRSDQAPIVLSRYTDPDNQIQCDYVY  181
            CAG     +NAWG++IL  IQD+A +TLAL+GTPWRSD+ +I L+RY+ P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVADGVCRSPRIVLIDNDKILVTDE---ENETKTYSCLDDLFKCSSVSYQSIIKNH  238
            GLK+A+ADGVCRSPRIVL+DN+K+ +T+E   ++  + ++ +  L+  S+V+Y+ +++++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  EAIRHTLALATDKLGMIKQSNPNAAGLIVASSISHAAYIFNMLKTDFSETTQIVTYKEDD  298
            + I   L L+  KL  ++Q +P+AAGL+VA+ I HA  I + L T  +E  +IVT K  D
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNKTPD  301

Query  299  PSLKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRTNDST  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR  + +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQQAWLYTFAEPKLVEFANRIAEEIPDIPVLFRE  392
            ++QAWL+ +AEPKL  FA+RIA+++PD   ++R+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRD  395

12) Sfri_3418 in NC_008345


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  369 bits (1387),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 203/396 (52%), Positives = 299/396 (76%), Gaps = 7/396 (1%)

Query  3    LRQWQSECVNRALEHFSAKHKHFLCLATPGAGKTIMASEVAVQLLEQDLIDFVLCFSPSI  62
            LR WQ+ C+ +ALEH++  + HF+C ATPGAGKT MA+E++ +LL+QD ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGIKQTFSKRLECRFDGVIGAVGCSYTYQSMLSFKED-FWQLLKQNRVLVIFDEIHH  121
            ++ +G++ TFS  L  R+DG +GAVG +YTYQ+M  ++++ FWQLL + RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSGSSLEDANAWGEEILLNIQSQAEYTLALTGTPWRSDQAPIALSRYTDPDNQIQCDYIY  181
            C+G     +NAWG++IL  IQ +A +TLAL+GTPWRSD+ +IAL+RY+ P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLREAVADGVCRSPKIVLIDNEKISVTDE---ENETKTFNCLDALFKGSLVSYQSVIKND  238
            GL++A+ADGVCRSP+IVL+DN+K+ +T+E   ++  + F  +  L+  S V+Y+ ++++D
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  VAIRHALTLATNKLDDIRLHNPNAAGLVVASSIEHAAYILNMLRNEYAQTAEIVTYKEDL  298
              I   L L+ +KL+++R  +P+AAGLVVA+ IEHA  I + L +  ++   IVT K   
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  299  PSLKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRVDKAT  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR    +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQDAWLYTFAAPKLVEFANRIAEEIPDVPVVFRESD  394
            +++AWL+ +A PKL  FA+RIA+++PD   V+R+ +
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQ  397

13) Shal_0521 in NC_010334


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 205/396 (52%), Positives = 296/396 (75%), Gaps = 7/396 (1%)

Query  3    LRQWQSECVNHALEHFSAKQKHFLCLATPGAGKTIMASEVAFHLLEQDLIDFVLCFSPSI  62
            LR WQ+ C+  ALEH++  Q HF+C ATPGAGKT MA+E++ +LL+QD ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGIKQTFSTRLECRFDGVIGAVGCSYTYQSMLSFKAD-FWQLLKQNRVLVIFDEIHH  121
            ++ +G++ TFS  L  R+DG +GAVG +YTYQ+M  ++ + FWQLL + RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSGSSLEDANAWGEEILLNIQSQAEYTLALTGTPWRSDQAPIALSRYTDPDNQIQCDYIY  181
            C+G     +NAWG++IL  IQ +A +TLAL+GTPWRSD+ +IAL+RY+ P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLREAVADGVCRSPKIVLIDNERISVTDE---ENETKTFNCLDALFKGSLVSYQSIIKND  238
            GL++A+ADGVCRSP+IVL+DN+++ +T+E   ++  + F  +  L+  S V+Y+ ++++D
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  VAIRHALTLATSKLDDIRLHNPNAAGLVVASSIEHATYILNMLRNEYGETAEIVTYKEEL  298
              I   L L+ SKL+++R  +P+AAGLVVA+ IEHA  I + L +  GE   IVT K   
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  299  PSLKINEFRNSTTNWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRTNKSK  358
            +   IN FR++T  WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGR+LR     
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQEAWLYTFAAPKLVEFANRIAEEIPDVPIIFRESE  394
            +++AWL+ +A PKL  FA+RIA+++PD   ++R+ +
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQ  397

14) TOL_3398 in NC_020888


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  367 bits (1380),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 199/355 (57%), Positives = 282/355 (80%), Gaps = 4/355 (1%)

Query  1    MAAELAKLLFAEGKIDAVICFAPACQIVDGFRRTFTKVLGRAFDGRMNAAGTAITYQSIE  60
            MAAEL+  L+ +++ID V+CFAP+CQ+V+GFR TF+ VLGR +DG+M A G+A TYQ++E
Sbjct  39   MAAELTSRLLQQDRIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAME  98

Query  61   HQEESFWRLFEELRVFTVFDEIHHCSGGDEVQSPNIWGQRIIQRIQDSATYTLAMSGTPW  120
             ++E+FW+L+++ RV+ VFDEIHHC+G D + S N WGQ+I++RIQD A +TLA+SGTPW
Sbjct  99   YRDEGFWQLLDDYRVLVVFDEIHHCAGHDPLLS-NAWGQQILHRIQDRAVFTLALSGTPW  157

Query  121  RSDERSIALARYSTPEGRLVVDYQYSLKDAIQEGVCRAPRVTLVDNSEITLKR---IDNI  177
            RSD+++IALARYS+PEG+L+ DY+Y+LKDAI +GVCR+PR+ L+DN  + L      D+ 
Sbjct  158  RSDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSS  217

Query  178  VDNYDGFSSLLNSSKATFESLVTHVGINRQLLLLAQKRLNEIRISMPDAAALVVASNIDH  237
            V  + +++ LL  S  T+E L+ H ++   +L L+  +LNE+R   PDAA+LVVA++I+H
Sbjct  218  VRLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEH  277

Query  238  AYKVSELLQQMDEQVVVVTTHRNDANQVIDDFRSGLSRWIVAVGMVSEGTDIPRLQVCCY  297
            A ++++ L+ M+E+  +VT    DA+QVI+ FRS   RWIVAVGM+SEGTDIPRLQVCCY
Sbjct  278  AQQIAQALETMGEECRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCY  337

Query  298  LSRIRTEMYFRQVLGRVLRQRSKTDNQAWMYMLAEPELSASAERLMDDLPEHLAV  352
            LSRIRTE+ +RQVLGRVLR+ + +D+QAW++MLAEP L + AER+ DDLP++LAV
Sbjct  338  LSRIRTELHYRQVLGRVLRRTGESDDQAWLFMLAEPKLQGFAERIADDLPDDLAV  392

15) swp_1004 in NC_011566


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  365 bits (1371),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 207/466 (45%), Positives = 327/466 (71%), Gaps = 11/466 (2%)

Query  2    KLRQWQHDCVKKALESYQTQNHFMCLATPGAGKTVMAAELAARLIAMGKVDFVLCFSPSS  61
             LR WQ+ C+ KALE     +HF C ATPGAGKT MAAEL++RL+  +++D+VLCF+PS 
Sbjct  4    SLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   EVNESIRASFSRRLHKRFDGLMGAIGSVYTYQSMSSLTPEFWQLLHSHNVFVIMDEVHHL  121
            +V E++R++FS  L +R+DG MGA+G+ YTYQ+M      FWQLL+   V+V+ DE+HH 
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  KGTELNNANAWGEEVLLNIQNQACYTLALSGTPWRSDSAPIVLSRFTEPDNTIHCDFVYG  181
             G +   +NAWG+++L  IQ++A +TLALSGTPWRSD  +I L+R++ P+  + CD+ YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAVADDVCRKPNIALIDNDKIRLDDELESET----FSSITELLKGSGFSYKALISNHQ  237
            LK+A+AD+VCR P I L+DN+K++L +EL +++    F+SI+ LL  S  +Y  L+ +++
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  VMHYMLNQGIKKLEQIRQETPFSGGLIVASSIKHAKQLYQIIVGDFKQTAC-IVTSKLKH  296
            V++ +L+ G  KL+++RQ  P ++GL+VA+ I HA+Q+ Q +  +     C IVT+K  +
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL--ETMGEECRIVTNKTPD  301

Query  297  PSHTIEAFRQSDTQWIVSVGMISEGTDIPRLQVCCHLSLIKTEMHYRQVLGRILRVTSCD  356
            + + I+AFR +  +WIV+VGMISEGTDIPRLQVCC LS I+TE+HYRQVLGR+LR T+  
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  357  AQQAWLFTLAEASLIEFAYRIDQDLPENAVIVEQTEQQELNLALPHKPISTEFDHDLS--  414
             +QAWLF LAE+ L  FA RI +DLP++  ++ + +   +N      P+++  +H  +  
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGAS-GHVKGIG  420

Query  415  -SNLHFSEISLATKAATPPLLIDIEEENSYNLALLGGYKEQIVRMF  459
             + L  +E +++++A+    L ++ +E +Y++++   Y++Q++  F
Sbjct  421  DAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

16) Swoo_4016 in NC_010506


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  363 bits (1364),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 203/410 (50%), Positives = 304/410 (75%), Gaps = 8/410 (1%)

Query  3    LRQWQLECLNRALEHYNAKHRHFLCLATPGAGKTIMAAEVAAQLLEQDLVDFVLCFSPSV  62
            LR WQ  C+ +ALEH    + HF+C ATPGAGKT MAAE++++LL+QD +D+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISQGIKHTFLKRLGCRFDGVIGAVGCSYTYQSLLSFKDD-FWLLLKQNRVLVVFDEIHH  121
            ++ +G++ TF   LG R+DG +GAVG +YTYQ++  ++D+ FW LL + RVLVVFDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGSTLEDANAWGEEILLNIQNQAEYTLALTGTPWRSDQAPIVLSRYIDPEKQIQCDYVY  181
            CAG     +NAWG++IL  IQ++A +TLAL+GTPWRSD+ +I L+RY  PE ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLRQAVADGVCRNPKIVLIDNAKLSVTNE---GNQTKIFNCLDELFKGSSIQYQAVIKNS  238
            GL++A+ADGVCR+P+IVL+DN K+ +T+E   ++  ++F  +  L+  S++ Y+ ++++ 
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  EAIRHVLTLATRRLQSIKQHNPNAAGLIVASSLEHAAYILNILKTEYAQTAEIVTYKEDQ  298
            + I  +L L+  +L+ ++Q +P+AAGL+VA+ +EHA  I + L T  ++   IVT K  +
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETM-GEECRIVTNKTPD  301

Query  299  PSNKINEFRSSNINWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQVLGRVLRINKTK  358
            + + IN FRS+   WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQVLGRVLR     
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  NQDAWLYTFAEPKLVEFANRLAEEIPDVPVVFREFGDSVFSIDESKAETI  408
            +++AWL+ +AEPKL  FA+R+A+++PD   V+R+   + F+  +S++E +
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFN-PDSRPEPM  410

17) Spea_1893 in NC_009901


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  361 bits (1357),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 205/394 (53%), Positives = 295/394 (75%), Gaps = 7/394 (1%)

Query  3    LRQWQLECVNRALEHFNANQRHFLCLATPGAGKTIMAAEVAAELFEQDLIDFVLCFSPSV  62
            LR WQ  C+ +ALEH+   Q HF+C ATPGAGKT MAAE+++ L++QD ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISKGIQKTFSHRLECRFDGVIGAVGCSYTYQGMLSFKED-FWQLLKRNRVLVIFDEIHH  121
            ++  G++ TFS+ L  R+DG +GAVG +YTYQ+M  ++++ FWQLL   RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSGSTLEDANAWGEEILLNIQDQAQYTLALTGTPWRSDQAPIVLSRYLDPDNEIQCDYVY  181
            C+G     +NAWG++IL  IQD+A +TLAL+GTPWRSD+ +I L+RY  P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVRDGVCRNPKIVLIDNEELSVKNQYNE---IQTFSSFNELFKGSSIPYQLVIKND  238
            GLK+A+ DGVCR+P+IVL+DN+ + + ++      ++ F+S+  L+  S++ Y+ ++++D
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  LAIHHVLSLAIDKLGSIRQLNPDAAGLVVASSIEHACFILEILKNTFKQTATIVTYQEIA  298
              I+ +L L+  KL  +RQ++PDAAGLVVA+ IEHA  I + L +T  +   IVT +   
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  299  PSDTINKFRHDDTQWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQILGRILRTTKAH  358
            + + IN FR +  +WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQ+LGR+LR T   
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  DQQAWLFTFAEPKLTDFAYRIAIELPEGSTVIRE  392
            D+QAWLF +AEPKL +FA RIA +LP++ +V+R+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRD  395

18) Spea_3459 in NC_009901


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  361 bits (1357),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 205/394 (53%), Positives = 295/394 (75%), Gaps = 7/394 (1%)

Query  3    LRQWQLECVNRALEHFNANQRHFLCLATPGAGKTIMAAEVAAELFEQDLIDFVLCFSPSV  62
            LR WQ  C+ +ALEH+   Q HF+C ATPGAGKT MAAE+++ L++QD ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   NISKGIQKTFSHRLECRFDGVIGAVGCSYTYQGMLSFKED-FWQLLKRNRVLVIFDEIHH  121
            ++  G++ TFS+ L  R+DG +GAVG +YTYQ+M  ++++ FWQLL   RVLV+FDEIHH
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAM-EYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSGSTLEDANAWGEEILLNIQDQAQYTLALTGTPWRSDQAPIVLSRYLDPDNEIQCDYVY  181
            C+G     +NAWG++IL  IQD+A +TLAL+GTPWRSD+ +I L+RY  P+ ++ CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKEAVRDGVCRNPKIVLIDNEELSVKNQYNE---IQTFSSFNELFKGSSIPYQLVIKND  238
            GLK+A+ DGVCR+P+IVL+DN+ + + ++      ++ F+S+  L+  S++ Y+ ++++D
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  239  LAIHHVLSLAIDKLGSIRQLNPDAAGLVVASSIEHACFILEILKNTFKQTATIVTYQEIA  298
              I+ +L L+  KL  +RQ++PDAAGLVVA+ IEHA  I + L +T  +   IVT +   
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  299  PSDTINKFRHDDTQWIVSVGMISEGTDIPRLQVCCHLSRVKTELYFRQILGRILRTTKAH  358
            + + IN FR +  +WIV+VGMISEGTDIPRLQVCC LSR++TEL +RQ+LGR+LR T   
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  359  DQQAWLFTFAEPKLTDFAYRIAIELPEGSTVIRE  392
            D+QAWLF +AEPKL +FA RIA +LP++ +V+R+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRD  395

19) VV1_3188 in NC_004459


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  360 bits (1352),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 192/386 (50%), Positives = 292/386 (76%), Gaps = 6/386 (1%)

Query  2    LRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPSV  61
            LR WQ  C+++ALE   + ++HFFCQATPGAGK+ M+A L+  LL+++ IDL+LCF+PS 
Sbjct  5    LRSWQNSCITKALEHL-TVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   AVADGMRATFSITINCPFNGSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHHC  121
             V +G R+TFS  +   ++G +G++G + TYQ+++Y +++FW+ ++ YR+LVVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKFPIVLAEYSDPEGKLFCDYQYG  181
            +G++P  +N WGQQIL RIQ+ A +TLALSGTPWRSD  +I LA YS PEG L+CDY+YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LAEAIADKVCRKPKLVLVDNEHLTISE----GSEKKSFASILELLKQSKTSYQDVIHNTQ  237
            L +AIAD VCR P++VL+DN+ + ++E    +S  + F+SI  LL +S  +Y++++++ +
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  AMEYILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDP  297
             ++ IL+LG  KL+E+R+   +A+GLVV++ + HA+Q+ + L E  G+   +VT    D+
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  QSEIKAYQTGTTQWIVSVGMISEGTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPN  357
            Q  I+A+++ T +WIV+VGMISEGTDIPRLQVCC +S ++TEL +RQVLGR+LR    ++
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  358  QQAWLYTFAEQNLIEYAERIEHDIPE  383
            +QAWL+ +AE +L  +AERI +D+P+
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPD  388

20) Sbal223_4198 in NC_011663


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  355 bits (1333),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 203/467 (44%), Positives = 317/467 (68%), Gaps = 9/467 (1%)

Query  2    KLRQWQSQCVDAALARYQTQSHFMCLATQGAGKTIMAAELAARLIAMGKIDFVLCFFPSS  61
             LR WQ+ C+  AL +     HF C AT GAGKT MAAEL++RL+  ++ID+VLCF PS 
Sbjct  4    SLRSWQNSCITKALEHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   EVNDSIRSTFSKRLNKRFDGLMGAIGSVYTYQFMPSLTEAFWQLLRTHKVFVIMDEVYHL  121
            +V +++RSTFS  L +R+DG MGA+G+ YTYQ M    E+FWQLL   +V+V+ DE+ H 
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  KGNLLSNANAWGEEVLLNIQYNAAYTUALSGTPWRSDKAPIVLSRFTEPDNTIHCDFSYG  181
             G+    +NAWG+++L  IQ  A +T ALSGTPWRSD  +I L+R++ P+  + CD+ YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAIADNVCRQPNIVLIDNNKIK----LEIDQEIETFASIAELLLDPRYSYQALINHHQ  237
            LK+AIAD VCR P IVL+DN+K+K    L  D  +  F+SIA LL ++  +Y+ L+ H++
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  IMHYMLNQCVKKLAEIRLNNPNAGGLVVAASIKHAKRLLQILVSDLKQSAC-IVTSSSKN  296
            +++ +L+    KL E+R  +P+A+GLVVA+ I HA+++ Q L  +     C IVT+ + +
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL--ETMGEECRIVTNKTPD  301

Query  297  PSCIIDGFRQSHTQWIVSVGMISEGTDIPRLQVCCHLSRIKTEMHYRQVLGRILRVNSNE  356
            +  +I++FR +  +WIV+VGMISEGTDIPRLQVCC LSRI+TE+HYRQVLGR+LR  ++ 
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  357  AQQAWLFTLAETSLTEFAYRIDQDLPEQSVVIKQTGSQDLDIELPQLTSSEATQGNIGHE  416
             +QAWLF LAE  L  FA RI +DLP++  V+++    +++ +      + ++ G++   
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSR--PEPMGASGHVKGI  419

Query  417  LHVDLSGFSLSNTNEHASASHKSAIDEENSYNLALLGSYKEQIVRMF  463
             + +L+G   +  ++ ++    +++ +E +Y++++   Y++Q++  F
Sbjct  420  GDAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

21) Ping_0145 in NC_008709


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  353 bits (1325),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 195/397 (50%), Positives = 296/397 (75%), Gaps = 5/397 (1%)

Query  2    LRAWQQECLTTAKNHYLEISKHFLCLATPASGKTVLAAEVAGYLFDTKQIDFVLCFSPSI  61
            LR+WQ+ C+T A +H L +++HF+C ATP++GKT +AAE+++ L++  +ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEH-LTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   TVAEGIKNTFARRLNCNFDGVIGAIGCSYTYQNMRFFNEDNWKIIKNNRVLVVFDEIHHC  121
             V EG+++TF+  L   +DG +GA+G +YTYQ M + +E+ W+++ + RVLVVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGSSFDDANAWGQDIVQHIQEQAAYTLALTGTPWRSDLIPIALANYSDPDNKIQCDYTYS  181
            +G     +NAWGQ+I+++IQ++A +TLAL+GTPWRSD  +IALA YS P+  + CDY Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LQQAVDDGVCRNPKIVLIDNEEISVT---TKEQETKVFNSLHDLLKAPLISYQDLICHEV  238
            L++A+ DGVCR+P+IVL+DN+ + +T     +   ++F S+  LL  + ++Y++L+ H+ 
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  VIQYILQKGCNKLAEIRQFNQDAGGLIVASSVEHAQQILKMLTEQFQQTAVIVTYKEPDA  298
            VI+ IL+ G +KL E+RQ++ DA+GL+VA+ +EHAQQI + L E   +   IVT K PDA
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  299  AERIKHFRFCNTEWIVSVGMVAEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRVNEAVN  358
             + I+ FR     WIV+VGM++EGTDIPRLQVCC LSR++TEL +RQVLGR+LR     +
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  359  QEAWLFTFAEEKLSIFAHRIDQELPDSNVLVRGNAIA  395
            ++AWLF +AE KL  FA+RI ++LPD   ++R+  ++
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMP  399

22) N175_01620 in NC_022223


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  351 bits (1318),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 190/390 (49%), Positives = 284/390 (73%), Gaps = 6/390 (1%)

Query  1    MRSMLRDWQRDCAMRALTKYQGEQSHFFCQATPGAGKTILAAEIAKRLLAGNLIDLVLCF  60
            M   LR WQ  C  +AL      Q HFFCQATPGAGKT +AAE++ RLL  + IDLVLCF
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCF  59

Query  61   SPTLSVADSIKGTFSKTLHCTFNGGLGSIGQSLTYQSIQFLNDEFWRILTKYRVFVVFDE  120
            +P+  V +++++TFS  L   ++G +G++G + TYQ++++ ++ FW++L  YRV+VVFDE
Sbjct  60   APSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDE  119

Query  121  IHHCSGSEMEGANAWGQQILSKVQGLATYTLALSGTPWRSDSLAIVMAEYSDPDGQLLVD  180
            IHHC+G +   +NAWGQQIL ++Q+ A +TLALSGTPWRSD  AI +A YS P+G+L+ D
Sbjct  120  IHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICD  179

Query  181  YQYSLKQAIEDRVCRSPKIVLVDNEHLTIT----GSKEVQSFSSILELLKQTKTSYQSII  236
            Y+Y+LK+AI D VCRSP+IVL+DN+ + +T    +   V+ F+SI  LL ++  +Y+ ++
Sbjct  180  YRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELL  239

Query  237  HNDEAMEYLLGLGCNKLASIRLESPNAGGLVVAASVQHAKKIQKILVTQFHQSAAIVTYR  296
            ++D+ ++ +L+LG +KL  +R   P+A+GLVVA+ ++HA++I + L T   +   IVT +
Sbjct  240  RHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNK  298

Query  297  HDEPLSEINAYRHGNTEWIVSVGMISEGTDIPRLQVCCHISSVKTELYFRQVLGRILRVN  356
              ++   INA+R     WIV+VGMISEGTDIPRLQVCC +S ++TEL +RQVLGR+LR  
Sbjct  299  TPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRT  358

Query  357  DEPNQEAWLFTFAEQSLIEYSERIEQDIPE  386
            +E++++AWLF +AE  L  ++ERI +D+P+
Sbjct  359  GESDDQAWLFMLAEPKLQGFAERIADDLPD  388

23) VAA_00606 in NC_015633


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  351 bits (1318),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 190/390 (49%), Positives = 284/390 (73%), Gaps = 6/390 (1%)

Query  1    MRSMLRDWQRDCAMRALTKYQGEQSHFFCQATPGAGKTILAAEIAKRLLAGNLIDLVLCF  60
            M   LR WQ  C  +AL      Q HFFCQATPGAGKT +AAE++ RLL  + IDLVLCF
Sbjct  1    MSRSLRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCF  59

Query  61   SPTLSVADSIKGTFSKTLHCTFNGGLGSIGQSLTYQSIQFLNDEFWRILTKYRVFVVFDE  120
            +P+  V +++++TFS  L   ++G +G++G + TYQ++++ ++ FW++L  YRV+VVFDE
Sbjct  60   APSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDE  119

Query  121  IHHCSGSEMEGANAWGQQILSKVQGLATYTLALSGTPWRSDSLAIVMAEYSDPDGQLLVD  180
            IHHC+G +   +NAWGQQIL ++Q+ A +TLALSGTPWRSD  AI +A YS P+G+L+ D
Sbjct  120  IHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICD  179

Query  181  YQYSLKQAIEDRVCRSPKIVLVDNEHLTIT----GSKEVQSFSSILELLKQTKTSYQSII  236
            Y+Y+LK+AI D VCRSP+IVL+DN+ + +T    +   V+ F+SI  LL ++  +Y+ ++
Sbjct  180  YRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELL  239

Query  237  HNDEAMEYLLGLGCNKLASIRLESPNAGGLVVAASVQHAKKIQKILVTQFHQSAAIVTYR  296
            ++D+ ++ +L+LG +KL  +R   P+A+GLVVA+ ++HA++I + L T   +   IVT +
Sbjct  240  RHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNK  298

Query  297  HDEPLSEINAYRHGNTEWIVSVGMISEGTDIPRLQVCCHISSVKTELYFRQVLGRILRVN  356
              ++   INA+R     WIV+VGMISEGTDIPRLQVCC +S ++TEL +RQVLGR+LR  
Sbjct  299  TPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRT  358

Query  357  DEPNQEAWLFTFAEQSLIEYSERIEQDIPE  386
            +E++++AWLF +AE  L  ++ERI +D+P+
Sbjct  359  GESDDQAWLFMLAEPKLQGFAERIADDLPD  388

24) Ping_2555 in NC_008709


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  350 bits (1316),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 192/397 (49%), Positives = 294/397 (75%), Gaps = 5/397 (1%)

Query  2    LRAWQQECLTTAQKHYLEISKHFLCLATPASGKTVLAAEVAGYLFDTKQIDFVLCFSPSI  61
            LR+WQ+ C+T A  H L +++HF+C ATP++GKT +AAE+++ L++  +ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEH-LTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   TVAEGIKNAFARRLNCNFDGVIGAIGCSYTYQNMRFFNEDNWKIIKNNRVLVVFDEIHHC  121
             V EG++++F+  L   +DG +GA+G +YTYQ M + +E+ W+++ + RVLVVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGTSFDDANAWGQDIVQHIQEQATFTLALTGTPWRSDLIPIALANYSDPDNKIQCDYTYS  181
            +G     +NAWGQ+I+++IQ++A FTLAL+GTPWRSD  +IALA YS P+  + CDY Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LQQAVDDSVCRNPKIVLIDNEEISVT---TKEQETKVFNSLRDLLKAPLISYQDLICHEV  238
            L++A+ D+VCR+P+IVL+DN+ + +T     +   ++F S+  LL  + ++Y++L+ H+ 
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  VIQYILEKGCNKLAEIRQSNSNAGGLIVASSVEHAQQILKMLTEQFQQTAVIVTYKETDA  298
            VI+ IL+ G +KL E+RQ +++A+GL+VA+ +EHAQQI + L E   +   IVT K  DA
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  299  AERIKNFRFYNTEWIVSVGMVAEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRVNDAVN  358
             + I+ FR     WIV+VGM++EGTDIPRLQVCC LSR++TEL +RQVLGR+LR  +  +
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  359  QEAWLFTFAEEKLSIFAHRIDQELPDAGVLVRSNAIA  395
            ++AWLF +AE KL  FA+RI ++LPD   ++R   ++
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMP  399

25) PBPRA1805 in NC_006370


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  347 bits (1304),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 196/466 (43%), Positives = 330/466 (71%), Gaps = 14/466 (3%)

Query  2    KLRKWQSACVKQVLQKYNNYLKHFMCLATPAAGKTTMAAEVALQLVKQDKIDFVICFCPT  61
             LR WQ++C+ + L+      +HF C ATP+AGKT MAAE++ +L++QD+ID+V+CF P+
Sbjct  4    SLRSWQNSCITKALEHLTV-TQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPS  62

Query  62   KEVEQGIRRTFERHLSRSFNGSIGALGGVYTYQSLLTLTPEFWQILREYRVLVIFDELHH  121
             +V +G+R TF   L+R ++G +GA+G+ YTYQ++      FWQ+L +YRVLV+FDE+HH
Sbjct  63   CQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CAGDRLPNANAWGAQILINICDYATYTLGLSGTPWRSDRLPITLGRYLD-DNQIECDFTY  180
            CAG+    +NAWG QIL  I D A +TL+LSGTPWRSD  +I+L+RY   + ++ CD+ Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  181  GLKEAVADAVCRQPRIVLIDNDRITVT---SRKEGAKTFGSLTDAFSGSDLAYKSIISEQ  237
            GLK+A+AD+VCR PRIVL+DN+++ +T   +   + + F S++  ++ S ++Y  ++ ++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  238  ETMKHILSQGVSKLSELREQNPDAGGLVVASSIEHAIELAQMLQSEFGQSTVMVSHQDSM  297
            + ++ IL  G SKL+ELR+ +PDA+GLVVA+ IEHA ++AQ L++  G+   +V+++ + 
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNKTPD  301

Query  298  PSEIIDSYRKQTTEWIVSVGMVSEGTDIPRLQVCCYLSHVRTEMYYRQVLGRILRVNSSV  357
            + ++I+++R +T  WIV+VGM+SEGTDIPRLQVCCYLS++RTE+ YRQVLGR+LR  +  
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  358  NQEAWFYTFSEANLVKYANRIQNDLPDTSVIYELENEAASYSHGGQT----GQSQPNGIS  413
            +++AW++ ++E++L  +A+RI +DLPD   +   + + ++++ +++     + ++ +GI+
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVLR-DVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  414  ELSLRFDGRTntnlnnnvnsnELY-KAPDYQL--IGQYRQKVISLF  456
            + +L        +   N+ S   + + P YQ+    +YRQ++++ F
Sbjct  421  DAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQHYRQQLLACF  466

26) VV0144 in NC_005139


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  344 bits (1290),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 196/387 (51%), Positives = 288/387 (75%), Gaps = 6/387 (1%)

Query  2    LRLWQEECVGSALEKYLAGHSHFQVQATPGAGKTVAAAEIAKRLYDLDKIDLVLCFSPSL  61
            LR WQ+ C+  ALE  L+   HF  QATPGAGKT  AAE++ RL + D+IDLVLCF+PS 
Sbjct  5    LRSWQNSCITKALEH-LTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   TIADGIKNTFSWRLGCSFSGGLGSIGASFTYQSMKYLRDSFWETIKKHRVLVVFDEIHHC  121
             + +G+++TFS  LG  + G +G++GA++TYQ+M Y  ++FW+ +   RVLVVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGDEIENANVWGEQILRQIQGIAAFTLSLSGTPWRSDLLPITLAQYSDAEGRIHCDYQYG  181
            +G++   +N WG+QIL++IQ+ A FTL+LSGTPWRSD  +I+LA+YS +EG++ CDY+YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAIIDKVCRSPKIVLIDNDRLSISE----SGQSKSFSSIPDLLKQSATPYQSILQNID  237
            LK+AI D VCRSP+IVL+DN+++ ++E     +  + F+SI+ LL +S+  Y+ +L++ D
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  AMTYVLGLGCKKLADIRMDNPNAGGLVVASSVGHAIEIQKVLTETYEQSTEIVTYYHENP  297
             +  +L+LG  KL ++R  +P+A+GLVVA+ + HA +I + L ET  +   IVT    ++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  LEKINGYRNGTTQWIISVGMISEGTDIPRLQVCCHLSFVKTELYFRQVLGRILRTHESSN  357
             + IN++R+ T +WI++VGMISEGTDIPRLQVCC LS ++TEL +RQVLGR+LR    S+
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  358  QQAWLYTFAEESLVSFAEQIEQDIPDS  384
            +QAWL+ +AE  L +FAE+I +D+PD 
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDD  389

27) VS_1359 in NC_011753


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  341 bits (1282),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 279/387 (73%), Gaps = 6/387 (1%)

Query  2    LREWQSECSERALKKYQSNGSHFFCQATPGAGKTVLAANIASRLLQSDMADLVLCFSPSL  61
            LR WQ+ C  +AL    +   HFFCQATPGAGKT +AA+++SRLLQ D  DLVLCF+PS 
Sbjct  5    LRSWQNSCITKALEHL-TVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   TVSDGIKRTFSSILNCTFNGGMGAIGQSLTYQSIQFLNDEFWQILRNHRVFVVFDEIHHC  121
             V +G++ TFS +L   ++G MGA+G + TYQ++++ ++ FWQ+L + RV+VVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGSEVENANIWGQQVLTKIQGLATFTLALSGTPWRSDSLPIVMGEYSDPDGQLLVDYQYT  181
            +G +   +N WGQQ+L +IQ+ A FTLALSGTPWRSD  +I ++ YS P+G+L+ DY+Y 
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAIADGVCRTPKIVLVDNEHLsvsssekvesf----ssILEMLKQTKASYQSVIHNQE  237
            LK+AIADGVCR+P+IVL+DN+ + ++     +S     +SI  +L ++  +Y+ ++++++
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  AMEYLLGLGCERLEKVRLSSPNAGGLIVAASVQHAQTIKEILSQKFRQTVSIVTYRHEEP  297
             ++ +L+LG  +L+ +R   P+A+GL+VA+ ++HAQ I + L +   +   IVT +  ++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  LAEIGRYRQSNAQWIVSVGMISEGTDIPRLQVCCHMSSVKTELYFRQVLGRILRVNNKIN  357
               I  +R +  +WIV+VGMISEGTDIPRLQVCC +S ++TEL +RQVLGR+LR     +
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  358  QQAWLFTFAEQSLIEFSDRIEQDIPES  384
            +QAWLF +AE  L  F++RI +D+P+ 
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDD  389

28) VSAL_I0962 in NC_011312


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  341 bits (1279),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 190/424 (45%), Positives = 299/424 (71%), Gaps = 9/424 (2%)

Query  3    PLRQWQAECVKLTLERYDSGHQHFLCLATPGAGKSVMAAEVAFSLFKGNKIDFVLCFSPS  62
            +LR WQ  C+  +LE+     QHF+C ATPGAGK+ MAAE++  L++ ++ID+VLCF+PS
Sbjct  4    SLRSWQNSCITKALEHLTVT-QHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPS  62

Query  63   TAISQGLEQTFTSRLNCRFDGIIGALGASYTYQNLQFFDDKFWELIKKNRVLVVFDEIHH  122
              + +G+  TF+  L  R+DG +GA+GA+YTYQ +++ D+ FW+L+   RVLVVFDEIHH
Sbjct  63   CQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  123  CAGSSLKDANSWGEKIIENIQFQATYTLALSGTPWRSDKAPICLSNYINPNNEIECNYVY  182
            CAG     +N+WG++I++ IQ +A +TLALSGTPWRSD  +I L+ Y +P+ ++ C+Y Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  183  GLNQAISDGVCRSPKIVLVDNEKITLK---SSKSEAKSFTCINDFLNDSFGSYQTLINDE  239
            GL++AI+DGVCRSP+IVL+DN+K+ L    ++ S  + F  I  +L +S  +Y+ L+ ++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  240  KCMMYLLEKGIEKLEKIRKNKKNAAGLVVASSVEHAIRLFSILSNEFKKDTVLVTYKHND  299
              +  +L+ G  KL+ +R+ K +AAGLVVA+ +EHA ++   L +    +  +VT K  D
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  300  PTSTINHFRHSEAEWIVSVGMVSEGTDIPRLQVCCHLSRVKTELYFRQVLGRILRVNNGD  359
            +   IN FR +   WIV+VGM+SEGTDIPRLQVCC LSR++TEL +RQVLGR+LR     
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  360  NQEAWLYTFAEPNLVEYAHRIDQEIPEQNLIFCEDMDVAVFTPLEPKENDSKGLISDIRI  419
            +++AWL+ +AEP+L  +A+RI +++P++  ++  D++++ F P      ++ G  ++++ 
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAVL-RDVQMPGFNP--DSRPEPMGASGHVK-  417

Query  420  GLGE  423
            G+G+
Sbjct  418  GIGD  421

29) amad1_21393 in NC_019394


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 193/436 (45%), Positives = 298/436 (69%), Gaps = 20/436 (4%)

Query  3    LGNWQQRAIETALQKFKSPFTNFLCLATPGAGKTVMASALADILLKQDKVDFVLCFSPST  62
            L +WQ+  I  AL+ +     +F+C ATPGAGKT MA+ L+  LL+QD++D+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVT-QHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   VVANDFRVELEAITGKRFCGGLGAIGSSLTYQSMRHLDDTFWQLLSSYRVFVIFDEIHHC  122
             V ++FR  +  + G+R+ G +GA+G++ TYQ+M   D+ FWQLL  YRV+V+FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  123  AGNQIENANAWGAEILKHIQGRAVYTIALTGTPWRSDTIPIALANYVGEHGRLHVDYSYD  182
            AG++   +NAWG +IL +IQ+RAV+T+AL+GTPWRSD  +IALA Y + +G+L  DY Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  183  LKQAIKDGVCRVPHLTLLDNELITVIEDGGKEN----FQSITKFLEDSSLPYSEIIFHDE  238
            LK+AI DGVCR P++ LLDN+ + + E+ G ++    F SI+K+L +S++ Y E++ HD+
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  VLRETLERGIIRLNKERLIAEDAGGLIVASSISHAKKIQYLLSQLGEYSKVVTYQESEPE  298
            V+   L+ G  +LN  R I  DA+GL+VA+ I HA++I   L  +GE  ++VT + ++++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTPDAQ  303

Query  299  RLIQNFKRSNEKWIISIGMISEGTNIPRLRVCCYLSLVTTELYFRQVLGRVLRAQNNDRE  358
            ++I+ F+ +  +WI+++GMISEGT+IPRL+VCCYLS + TEL +RQVLGRVLR   +  +
Sbjct  304  QVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESDD  363

Query  359  MGYFITPAHPRLLEFASRVAEEVPHCAVLNSSNIDDLDSMRSSVLIGDSSLCFNPQVITK  418
             + ++  A+P+L  FA R+A+++P          DDL  +R   + G     FNP+    
Sbjct  364  QAWLFMLAEPKLQGFAERIADDLP----------DDLAVLRDVQMPG-----FNPDSRPE  408

Query  419  TVAEKEFDEGLGNDLL  434
             ++      G+G+  L
Sbjct  409  PMGASGHVKGIGDAGL  424

30) I607_20102 in NC_021711


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 193/436 (45%), Positives = 298/436 (69%), Gaps = 20/436 (4%)

Query  3    LGNWQQRAIETALQKFKSPFTNFLCLATPGAGKTVMASALADILLKQDKVDFVLCFSPST  62
            L +WQ+  I  AL+ +     +F+C ATPGAGKT MA+ L+  LL+QD++D+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVT-QHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   VVANDFRVELEAITGKRFCGGLGAIGSSLTYQSMRHLDDTFWQLLSSYRVFVIFDEIHHC  122
             V ++FR  +  + G+R+ G +GA+G++ TYQ+M   D+ FWQLL  YRV+V+FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  123  AGNQIENANAWGAEILKHIQGRAVYTIALTGTPWRSDTIPIALANYVGEHGRLHVDYSYD  182
            AG++   +NAWG +IL +IQ+RAV+T+AL+GTPWRSD  +IALA Y + +G+L  DY Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  183  LKQAIKDGVCRVPHLTLLDNELITVIEDGGKEN----FQSITKFLEDSSLPYSEIIFHDE  238
            LK+AI DGVCR P++ LLDN+ + + E+ G ++    F SI+K+L +S++ Y E++ HD+
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  VLRETLERGIIRLNKERLIAEDAGGLIVASSISHAKKIQYLLSQLGEYSKVVTYQESEPE  298
            V+   L+ G  +LN  R I  DA+GL+VA+ I HA++I   L  +GE  ++VT + ++++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTPDAQ  303

Query  299  RLIQNFKRSNEKWIISIGMISEGTNIPRLRVCCYLSLVTTELYFRQVLGRVLRAQNNDRE  358
            ++I+ F+ +  +WI+++GMISEGT+IPRL+VCCYLS + TEL +RQVLGRVLR   +  +
Sbjct  304  QVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESDD  363

Query  359  MGYFITPAHPRLLEFASRVAEEVPHCAVLNSSNIDDLDSMRSSVLIGDSSLCFNPQVITK  418
             + ++  A+P+L  FA R+A+++P          DDL  +R   + G     FNP+    
Sbjct  364  QAWLFMLAEPKLQGFAERIADDLP----------DDLAVLRDVQMPG-----FNPDSRPE  408

Query  419  TVAEKEFDEGLGNDLL  434
             ++      G+G+  L
Sbjct  409  PMGASGHVKGIGDAGL  424

31) I635_21394 in NC_021718


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 193/436 (45%), Positives = 298/436 (69%), Gaps = 20/436 (4%)

Query  3    LGNWQQRAIETALQKFKSPFTNFLCLATPGAGKTVMASALADILLKQDKVDFVLCFSPST  62
            L +WQ+  I  AL+ +     +F+C ATPGAGKT MA+ L+  LL+QD++D+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVT-QHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  63   VVANDFRVELEAITGKRFCGGLGAIGSSLTYQSMRHLDDTFWQLLSSYRVFVIFDEIHHC  122
             V ++FR  +  + G+R+ G +GA+G++ TYQ+M   D+ FWQLL  YRV+V+FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  123  AGNQIENANAWGAEILKHIQGRAVYTIALTGTPWRSDTIPIALANYVGEHGRLHVDYSYD  182
            AG++   +NAWG +IL +IQ+RAV+T+AL+GTPWRSD  +IALA Y + +G+L  DY Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  183  LKQAIKDGVCRVPHLTLLDNELITVIEDGGKEN----FQSITKFLEDSSLPYSEIIFHDE  238
            LK+AI DGVCR P++ LLDN+ + + E+ G ++    F SI+K+L +S++ Y E++ HD+
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  VLRETLERGIIRLNKERLIAEDAGGLIVASSISHAKKIQYLLSQLGEYSKVVTYQESEPE  298
            V+   L+ G  +LN  R I  DA+GL+VA+ I HA++I   L  +GE  ++VT + ++++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETMGEECRIVTNKTPDAQ  303

Query  299  RLIQNFKRSNEKWIISIGMISEGTNIPRLRVCCYLSLVTTELYFRQVLGRVLRAQNNDRE  358
            ++I+ F+ +  +WI+++GMISEGT+IPRL+VCCYLS + TEL +RQVLGRVLR   +  +
Sbjct  304  QVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESDD  363

Query  359  MGYFITPAHPRLLEFASRVAEEVPHCAVLNSSNIDDLDSMRSSVLIGDSSLCFNPQVITK  418
             + ++  A+P+L  FA R+A+++P          DDL  +R   + G     FNP+    
Sbjct  364  QAWLFMLAEPKLQGFAERIADDLP----------DDLAVLRDVQMPG-----FNPDSRPE  408

Query  419  TVAEKEFDEGLGNDLL  434
             ++      G+G+  L
Sbjct  409  PMGASGHVKGIGDAGL  424

32) VFMJ11_1060 in NC_011184


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 190/386 (50%), Positives = 279/386 (73%), Gaps = 5/386 (1%)

Query  2    LRKWQIEAVNLSLHKYENGQQDILLLATPGAGKSIAAAEIAYRLKQTHEIDFILCFSPSL  61
            LR WQ   +  +L+     Q+ ++  ATPGAGK+  AAE++ RL Q + ID++LCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQH-FFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   IVAEGMRSTFSYRFNASFHGTIGAVGGSYTYQNMLYLSDDFWQILENHNVLVVFDEIHHC  121
             V EG RSTFS  +   ++G +GAVG++YTYQ M Y  ++FWQ+L++  VLVVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGSDVSESNAWGEKILTKIQSKAKYTLALTGTPWRSDFTPITLAKYTDPDNQIYCDYIYG  181
            +G D   SNAWG++IL +IQ +A +TLAL+GTPWRSD  +I+LA+Y+ P+ ++ CDY YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LGEAVRDKVCRNPHLVLVDNNTFQVTK---SEEGKQTFGSVSELLKHSSVNYESVITHPE  238
            L +A+ D VCR+P++VL+DN+  ++T    ++ + + F S++ LL +S+V YE ++ H +
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  TMNYLLKLSCHKLAEVRKDNPEAAGLVVASSVSHAIELLNILKTKFKQTATIVTYRHDNP  298
             +N +L L+  KL E+R+ +P+AAGLVVA+ + HA ++ + L T   +   IVT +  ++
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETM-GEECRIVTNKTPDA  302

Query  299  LNEIANFRSSDTQWIVSVGMISEGTDIPRLQVCCHLSTVKTELYFRQVLGRILRVTQSKN  358
             + I  FRS+  +WIV+VGMISEGTDIPRLQVCC LS ++TEL +RQVLGR+LR T   +
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  359  QEAWLFTIAESKLTEFAERIDEDIPD  384
            ++AWLF +AE+KL  FAERI +D+PD
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPD  388

33) VEJY3_22951 in NC_016614


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  330 bits (1238),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 192/388 (50%), Positives = 288/388 (75%), Gaps = 7/388 (1%)

Query  2    LRVWQSECVTQVLKKFTSASHSHFFCQATPGAGKTVMAAEVAKCLFENDMIDLVLCFSPS  61
            LR WQ+ C+T+ L  +T + H  FFCQATPGAGKT MAAE++  L+++D IDLVLCF+PS
Sbjct  5    LRSWQNSCITKALEHLTVTQH--FFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPS  62

Query  62   LSVAQGMRSTFSWKLECSFNgglgslggsYTYQSIRFLGESFWKTVRKYRVLVVFDEIHH  121
              V +G RSTFS  L   ++G +G++G++YTYQ++ + +E+FW+ +  YRVLVVFDEIHH
Sbjct  63   CQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSFDEDGRSNSWGLEIISKLQGLAQYTLALSGTPWRSDQSPIVMAEYSDPDGMVICDYQY  181
            C+ ++   SN+WG +I+ ++Q+ A +TLALSGTPWRSD+ +I +A YS P+G +ICDY+Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  182  GLKQAVEDRVCRRPQIVLIDNEHLSISK----GSTNQHFTSILDCLKQSDVSYQSVIHNE  237
            GLK+A+ D VCR P+IVL+DN+ + ++     +S+ + F SI   L +S V+Y+ +++++
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  238  DAMNYILESGCKKLAQVRKESPNAGGLVVAASVRHAKDIQQRLIERFNQSACVVTYHLNN  297
            D +N IL+ G  KL ++R+  P+A+GLVVA+ + HA++I Q L E   +   +VT    +
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPD  301

Query  298  PLQEIESFRHSDTQWIVSVGMISEGTDIPRLQVCCHMSAVKTELYFRQVLGRILRINDSP  357
            + Q I++FR +  +WIV+VGMISEGTDIPRLQVCC +S ++TEL +RQVLGR+LR  + +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  358  NQEAWLYTFAEESLIGFAERIEQDIPES  385
            +++AWL+ +AE  L GFAERI +D+P+ 
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDD  389

34) Sde_1925 in NC_007912


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 189/431 (44%), Positives = 299/431 (70%), Gaps = 11/431 (2%)

Query  2    KLRRWQREAVSRCISRFRNGQNHFLCLATPGAGKTYMASTVAKTLLENGEVDFVFCFSPS  61
             LR WQ   +++ + ++   Q HF+C ATPGAGKT MA+ ++  LL+++ +D+V+CF+PS
Sbjct  4    SLRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPS  62

Query  62   LNVSLSFQSTLESVLGVRLNGLLGAKGNVLTYQSMLNLGQSFWSLMKTHRTLIIFDEIHH  121
             +V  +F+ST+  VLG RL+G +GA G   TYQ+M   +++FW L+   R L++FDEIHH
Sbjct  63   CQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHH  122

Query  122  CSGDHLGNANAWGQKIIQHIQGKATYSLALTGTPWRSDRIPIALTSY-CREGKVHCDYSY  180
            C+G++   +NAWGQ+I+++IQ++A ++LAL+GTPWRSD  +IAL+ Y   EG + CDY Y
Sbjct  123  CAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRY  182

Query  181  GLAQAIKDGVCRTPKITVIDNEKITVQN----NGKEDVYGSIGDLLKSSRCTYQQLLENL  236
            GL +AI DGVCR+P+I ++DN+K+ + +    ++   ++ SI+ LL  S  TY++LL + 
Sbjct  183  GLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHD  242

Query  237  TLIRYLVEQSHKALNTLRRVQPNAGGLIVAASVEHAVLIATILESICGESPTVVTYLHDE  296
             +I  +++ +   LN LR+++P+A+GL+VA+ +EHA  IA  LE++ GE   +VT    +
Sbjct  243  DVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALETM-GEECRIVTNKTPD  301

Query  297  SQQAIQRFRDGQTRWIVSVGMISEGTDIPRLQVCCHLTRVKTELYFRQVLGRILRVQNSG  356
            +QQ I+ FR    RWIV+VGMISEGTDIPRLQVCC L+R++TEL +RQVLGR+LR    +
Sbjct  302  AQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  357  NEEALLIMPAEPKLIEFAHRVAEDIPAANTVSLKTMEGSLQPLLTDQVEAETESGTNKID  416
            +++A L+M AEPKL  FA+R+A+D+P   +V L+ ++    P +  +  +E  +++  + 
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPDDLAV-LRDVQ---MPGFNPDSRPEPMGASGHVK  417

Query  417  TIKSNDTGEDQ  427
             I   + G  +
Sbjct  418  GIGDAGLGGAE  428

35) VIBHAR_06217 in NC_009784


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  325 bits (1220),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 175/387 (46%), Positives = 277/387 (72%), Gaps = 7/387 (1%)

Query  2    LRKWQAECISLALSKYRRGHAHFLAQATPGAGKTIMAATLAKQMFDSREIDFVLCFSPSK  61
            LR WQ  CI+ AL      + HF+ QATPGAGKT MAA L+ ++++   ID+VLCF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVTQ-HFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   AVADGIKSTFSQLLECSFNGALGETGCSVTYQSLRFVTKRFWDTLSKYKVLCIFDEIHHC  121
             V +G++STFS++L   ++G +G  G + TYQ++ +    FW+ L  Y+VL +FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  GGDNELNSNSWGYQLLSDVQHAATFTLALTGTPWRSDKTPITLASYTDPEGKIVCDYQYS  181
            +G++ L SN+WG Q+L  +Q+ A FTLAL+GTPWRSD  +I+LA Y+ PEG ++CDY+Y+
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LAQAVQDGVCRKPKIALIDCEEVKVTE----SEGLRSYNTIDELLNEGDVTYALILKDQQ  237
            L +A+ DGVCR P+I L+D + VK+TE      ++R + +I  LL E+ VTY  +L++++
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  ALLHLIGEAVSRLISIQAESPNAGGLIVASSIQEANKIASILTHSYAQSSVVVSYRDTSS  297
             +  +++ + S+L  ++   P+A+GL+VA+ I++A++IA  L ++ ++   +V+ +   +
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  HEKIKEFKETHSKNWIVSVGMVSEGTDIPRLQVCCYLTKIKTELYFRQVLGRILRVTESP  357
            ++ I+ F+    + WIV+VGM+SEGTDIPRLQVCCYL++I+TEL +RQVLGR+LR T  +
Sbjct  303  QQVINAFRSNTCR-WIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGES  361

Query  358  NQEAWLYTFAESNMIRCAEEIETDIPD  384
            +++AWL+ +AE+++   AE I  D+PD
Sbjct  362  DDQAWLFMLAEPKLQGFAERIADDLPD  388

36) CJA_1848 in NC_010995


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 200/470 (43%), Positives = 326/470 (70%), Gaps = 22/470 (4%)

Query  4    LRGWQSACVEKALTQFRRGDNHFLCLATPGAGKTAMAATLAQRLLVLGLIDLVVCFSPSI  63
            LR+WQ++C+ KAL ++    +HF+C ATPGAGKT MAA L+ RLL  + IDLV+CF+PS 
Sbjct  5    LRSWQNSCITKALEHLT-VTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  64   IVASDFQISLQAHTQARMDGLIGSRGCSLTYQSMLHLDDGFWELLQAYRVLVIFDEIHHC  123
             V  +F+ ++      R+DG +G+ G + TYQ+M   D+GFW+LL+ YRVLV+FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  124  AGDSVENANAWGEKIIRHIQGRAAYTLALTGTPWRSDRIPIALSQY-CQENRIHCDFVYG  182
            AG+    +NAWG++I+++IQ+RA +TLAL+GTPWRSD  +IAL++Y   E ++ CD+ YG
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  183  LAQAIRDNVCRAPSITLVDNDRIVVKH---GDKTDR-YSSFADLLKESECSYQQLIDNDT  238
            L +AI D VCR+P I L+DN+++ + +   +D + R ++S+A LL ES  +Y++L+ +D 
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  LIVYLLKQSAKKLSQVRKHHATAGGLIVAASVDHAHKIAVLLERHLGQRACIATYLEDDA  298
            +I  +L  +  KL+++R+  + A+GL+VA+ ++HA++IA  LE  +G+   I T    DA
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQALET-MGEECRIVTNKTPDA  302

Query  299  HAAIDAFRNNTDLWIISVGMVSEGTNIPRLRVCCHLTRVKTELHFRQVLGRILRMEAQPG  358
            +  I+AFR+NT  WI++VGM+SEGT+IPRL+VCC L+R++TELH+RQVLGR+LR  ++++
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  359  E-SYLYLPAEPNLVEYANRVAEEIPASATVRRETMPPQDDGIPVVIKMDEPPTPMLDAGE  417
            + + L++ AEP+L  +A+R+A+++P   +V R+   P        ++ D  P PM  +G+
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMP-------GFNPDSRPEPMGASGH  415

Query  418  IILENLLAPSAFADDGGLQPIHISLLA-----QSYDTTINMFGRFRQELL  462
            +      + ++   + G Q+ +I  L+      +Y+ +++   ++RQ+LL
Sbjct  416  VKGIGDAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQ--HYRQQLL  463

37) Shewmr7_3891 in NC_008322


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  321 bits (1203),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 193/387 (50%), Positives = 269/387 (70%), Gaps = 5/387 (1%)

Query  2    LRVWQAECADLAVRKYQTGMTHFFCQATPGAGKTTLAAEIASRLLLQNMVDLVLCFSPSL  61
            LR WQ  C   A+    T   HFFCQATPGAGKT +AAE++SRLL Q+ +DLVLCF+PS 
Sbjct  5    LRSWQNSCITKAL-EHLTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   TVSDSIQKTFSRRLKCSFSGGLGSIGQALTYQALQYLNNDFWETLRKYRVFVVFDEIHHC  121
             V ++++ TFS  L   + G +G++G A TYQA++Y +++FW+ L  YRV+VVFDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGDRVETANAWGGQILEKIQGLATFTLAMSGTPWRTDLLPIVMANYSNPEGALIVDYQYT  181
            +G+    +NAWG QIL++IQ+ A FTLA+SGTPWR+D  +I +A YS+PEG LI DY+Y 
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LGRAIQDKVCRLPKIVLIDshklstssssesiqhf---ssICEYLKESKGSYQSIIHNFK  238
            L  AI D VCR P+IVL+D++K+  +    +       +SI   L ES  +Y+ ++++  
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  239  AMEHILSLGCERLASLRSESISAGGLVVAASVKHAHSIAKMLIEKFGQTVSIVSYLDSKP  298
             ++ IL LG  +L  LR     A+GLVVA+ + HA+ IA+ L E  G+   IV+   + +
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  299  LKDIQQFREDQTQWIISVGMISEGTDIPRLQVCCHLSAIKTELYFRQVLGRILRVNGTDN  358
             + I+ FR +  +WI++VGMISEGTDIPRLQVCC LS I+TEL +RQVLGR+LR  G  +
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  359  QQAWLYTFAEPNLAAFAERIEIDLPES  385
            +QAWL+ +AEP+L +FAERI  DLP+ 
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDD  389

38) Maqu_0197 in NC_008740


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  318 bits (1191),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 193/434 (45%), Positives = 318/434 (74%), Gaps = 16/434 (3%)

Query  1    MVASVAKALFERGKIDFVVCFSPSRAVSQSVSTTFSRILGKSFNGQIGAAGGSYTYQSMA  60
            M A ++  L+++++ID+V+CF+PS  V ++  +TFS +LG+ ++GQ+GA G++YTYQ+M 
Sbjct  39   MAAELTSRLLQQDRIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAME  98

Query  61   TLPKDLWRVLSDHRVLVVLDEIHHCSGSNSDDLALGNSWGRTILERIQGHASFTIALSGT  120
                ++W++L D RVLVV+DEIHHC+G ++    L+N+WG+ IL+RIQ++A FT+ALSGT
Sbjct  99   YRDEGFWQLLDDYRVLVVFDEIHHCAGHDP---LLSNAWGQQILHRIQDRAVFTLALSGT  155

Query  121  PWRTDNTPIALARYTQPDGELHCDYEYGLQRAVLDGVCRAPNIVLTDNREIHLK---SSE  177
            PWR+D+ +IALARY+ P+G+L CDY YGL+ A+ DGVCR+P IVL DN+ + L    +++
Sbjct  156  PWRSDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGAD  215

Query  178  LGLKTYSSIRDTIKQGHISYPDFLYRNEVIDHTLSEASKKLLEIREQvpaaaglvvaatv  237
             +++ ++SI   + ++ ++Y ++L +++VI+  L  +  KL E+R+  P AAGLVVA+ +
Sbjct  216  SSVRLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDI  275

Query  238  ahaEQIADRLSALGERPVVVTCRTPEAHQIINNFRTSCDRWIISVGMISEGTDIPRLQVC  297
             HA+QIA+ L ++GE   +VT +TP+A+Q+IN FR++  RWI++VGMISEGTDIPRLQVC
Sbjct  276  EHAQQIAQALETMGEECRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVC  335

Query  298  CHLSRIRTELHFRQVLGRILRRQAGEPPEVGGWLYVLAESSLTEFARRINDDLPEQ----  353
            C LSRIRTELH+RQVLGR+LRR +GE+ +  +WL++LAE+ L  FA RI DDLP++    
Sbjct  336  CYLSRIRTELHYRQVLGRVLRR-TGESDD-QAWLFMLAEPKLQGFAERIADDLPDDLAVL  393

Query  354  ---NVVSFSPRSSKQNEDDASEYAVFAEDDEATEWGFSIDATGTWLSGPGQTGQKETTEL  410
               ++ +F+P S  +  + +++   +++ + +     +I++ +T + + G  ++  + ++
Sbjct  394  RDVQMPGFNPDSRPEPMGASGHVKGIGDAGLGGA-EPGIGSQATNIISLGGFANEPAYQV  452

Query  411  SMSNHYWSEILSLF  424
            S S+HY+ ++L+ F
Sbjct  453  SFSQHYRQQLLACF  466

39) VPBB_A1266 in NC_019971


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  311 bits (1167),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 186/387 (49%), Positives = 278/387 (72%), Gaps = 6/387 (1%)

Query  2    LRDWQRNCIKEALGKYKSGYKHFLTQATPGAGKTVMAAYLSKQLLDSNMIDLIICFSPSV  61
            LR WQ +CI  AL       +HF+ QATPGAGKT MAA L+ +LL+ + IDL++CF+PS 
Sbjct  5    LRSWQNSCITKALEHLTVT-QHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   NVANGFTRTFSRVLQCSFNGSLGALGTSLTYQAIQYLDEQFWETISKHRVLAIFDEIHHC  121
            +V +GF  TFS VL   ++G +GA+G++ TYQA++Y DE FW+ +   RVL +FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGETLSDANAWGEQIILKVQKASKYTLALTGTPWRsdslpislssysNPEGKIICDYQYT  181
            +G+    +NAWG+QI+ ++Q  + +TLAL+GTPWRSD  +I+L+ YS+PEG +ICDY+Y 
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAITDRVCRKPKLVLVDNEQL----QYVSPEESKYYSSIQALFKEQKMSYSSIVQDTD  237
            LK+AI+D VCR P++VL+DN+++    +  +    + ++SI  L+ E  ++Y  ++++ D
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  ALVHilklsaskllsirasNQDAGGLIVASSVAHARQIQTILNEQLKQPSVMVSYHDPDA  297
             +  IL L+ SKL  +R  + DA+GL+VA+ + HA+QI   L E + +   +V+   PDA
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  QKIIEQFKNGHSPWIISIGMISEGTDIPRLQVCCHLSNVRTELYFRQVLGRILRITDSNN  357
            Q++I+ F++    WI+++GMISEGTDIPRLQVCC LS +RTEL +RQVLGR+LR T+ ++
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  358  QEAWLYTLAEENLVKFAEEIEQDIPDS  384
            ++AWL+ LAE +L  FAE I +D+PD 
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDD  389

40) M634_16430 in NC_021821


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  310 bits (1163),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 191/446 (43%), Positives = 307/446 (69%), Gaps = 10/446 (2%)

Query  2    LRDWQRNCIKEALGKYKSGNKHFLTQATPGAGKTIMAAYLSKQLLDSNMIDLIICISPSV  61
            LR WQ +CI  AL    +  +HF+ QATPGAGKT MAA L+ +LL+ + IDL++C++PS 
Sbjct  5    LRSWQNSCITKALEHL-TVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAPSC  63

Query  62   NVANGFTRTFSRVLQCSFNGSLGSLGTSLTYQAIQYLDDQFWETISKHRVLAIFDEIHHC  121
            +V +GF  TFS VL   ++G +G++G++ TYQA++Y D+ FW+ +   RVL +FDEIHHC
Sbjct  64   QVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIHHC  123

Query  122  SGETLSDANAWGEQIILKVQKASKYTLALTGTPWRsdslpislssysNPEGKIICDYQFT  181
            +G+    +NAWG+QI+ ++Q  + +TLAL+GTPWRSD  +I+L+ YS+PEG +ICDY++ 
Sbjct  124  AGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYRYG  183

Query  182  LKQAITDRVCRKPKLVLVDNEQL----QYVSPEESKYYSSIQALFKEQKISYSSILQDTD  237
            LK+AI+D VCR P++VL+DN+++    +  +    + ++SI  L+ E  ++Y  +L++ D
Sbjct  184  LKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRHDD  243

Query  238  ALVHilklsaskllsirasNQDAGGLIVASSVAHARQIQTILNEQLKQPSVMVSYHDPDA  297
             +  IL L+ SKL  +R  + DA+GL+VA+ + HA+QI   L E + +   +V+   PDA
Sbjct  244  VINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTPDA  302

Query  298  QKIIEQFKNGHSPWIISIGMISEGTDIPRLQVCCHLSNVRTELYFRQVLGRILRITDSNN  357
            Q++I+ F++    WI+++GMISEGTDIPRLQVCC LS +RTEL +RQVLGR+LR T+ ++
Sbjct  303  QQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGESD  362

Query  358  QEAWLYTLAEENLVKFAEEIEQDIPDSCLYIKQPEDKE-EEDAHSLETSSSHTVRTFSKL  416
            ++AWL+ LAE +L  FAE I +D+PD    +++ +    + D+++   ++S  V+    +
Sbjct  363  DQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKG---I  419

Query  417  GDFKWNNSDTSVQVGNENSVPYGSFT  442
            GD     ++ ++     N ++ G+F+
Sbjct  420  GDAGLGGAEPGIGSQATNIISLGGFA  445

41) M5M_02975 in NC_018868


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/422 (43%), Positives = 289/422 (69%), Gaps = 9/422 (2%)

Query  2    RHLRAWQAECVAHAQARFLAGQRQFLAVATPGAGKTVMAAELARRLVAEGDIDLVYCFTP  61
            R LR+WQ  C++ A  + L+  ++F+  ATPGAGKT MAAEL+ RL+ ++ IDLV CF+P
Sbjct  3    RSLRSWQNSCITKALEH-LTVTQHFFCQATPGAGKTRMAAELTSRLLQQDRIDLVLCFAP  61

Query  62   SVAVAAGFSQTLSRHTGRSMAGVAGALGRTFTYQQLPFLGEDCWQAFRHHRVLVILDEIH  121
            S  V  GF  T+S   GR + G  GA+G ++TYQ + + +E+ WQ + + RVLV++DEIH
Sbjct  62   SCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAMEYRDEGFWQLLDDYRVLVVFDEIH  121

Query  122  HCGGQGP-EGNRWGQQVMAQILTGARFTLSLSGTPWRSDKRPVTSAHY--HDSQVVPDYV  178
            HC+G++P  +N WGQQ++ +I   A FTL+LSGTPWRSD ++++ A+Y   +++++ DY 
Sbjct  122  HCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWRSDDKAIALARYSSPEGHLICDYR  181

Query  179  YDLRRAIAEGVCRAPRIVATDCADIQVE---STRGPTQHFASFREAFAESPLAYRQLLTH  235
            Y+L+ AIA+GVCR+PRIV  D   +++    ++ ++ + F+S+   ++ESP++Y +LL H
Sbjct  182  YGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSVRLFPSIAKLLGESPVTYEELLRH  241

Query  236  PGLTRHLLGQAVDRLAVLRRRTPDAGGLVVATSIAHARQLIRCLRDDHGQRATLVASHQP  295
             ++   +L+ +  +L  LR+  PDA+GLVVAT I HA+Q+ + L +  G+   +V++  P
Sbjct  242  DDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHAQQIAQAL-ETMGEECRIVTNKTP  300

Query  296  DAQARLAMFAQGDSPWLVAVGMVSEGTDIPRLQVCCHLSAIKTALHFRQVLGRIIRCRQG  355
            DAQ  +  F      W+VAVGM+SEGTDIPRLQVCC LS I+T LH+RQVLGR++R    
Sbjct  301  DAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYLSRIRTELHYRQVLGRVLRRTGE  360

Query  356  AGEIADLFIIAEPTLVGFAQALAQTVPEQ-EILVQAHFESVTSAGHPSPPTVSAGIDVVE  414
            +++ A LF++AEP L GFA+ +A+ +P++  +L + +  +  + ++P P   S+ +  + 
Sbjct  361  SDDQAWLFMLAEPKLQGFAERIADDLPDDLAVLRDVQMPGFNPDSRPEPMGASGHVKGIG  420

Query  415  ET  416
            ++
Sbjct  421  DA  422

42) M892_20935 in NC_022270


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  299 bits (1121),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 156/352 (45%), Positives = 255/352 (73%), Gaps = 6/352 (1%)

Query  1    MAATLAKQMFDSREIDFVLCFSPSKAVADGIKSTFSQLLECSFNGALGETGCSVTYQSLR  60
            MAA L+ ++++   ID+VLCF+PS  V +G++STFS++L   ++G +G  G + TYQ++ 
Sbjct  39   MAAELTSRLLQQDRIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAME  98

Query  61   FVTKRFWDTLSKYKVLCIFDEIHHCGGDNELNSNSWGYQLLSDVQHAATFTLALTGTPWR  120
            +    FW+ L  Y+VL +FDEIHHC+G++ L SN+WG Q+L  +Q+ A FTLAL+GTPWR
Sbjct  99   YRDEGFWQLLDDYRVLVVFDEIHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWR  158

Query  121  SDKTPITLASYTDPEGKIVCDYQYSLAQAVQDGVCRKPKIALIDCEEVKVTE----SEGL  176
            SD  +I+LA Y+ PEG ++CDY+Y+L +A+ DGVCR P+I L+D + VK+TE      ++
Sbjct  159  SDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSV  218

Query  177  RSYNTIDELLNEGDVTYALILKDQQALLHLIGEAVSRLISIQAESPNAGGLIVASSIQEA  236
            R + +I  LL E+ VTY  +L++++ +  +++ + S+L  ++   P+A+GL+VA+ I++A
Sbjct  219  RLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHA  278

Query  237  NKIASILTHSYAQSSVVVSYRDTSSHEKIKEFKETHSKNWIVSVGMVSEGTDIPRLQVCC  296
            ++IA  L ++ ++   +V+ +   +++ I+ F+    + WIV+VGM+SEGTDIPRLQVCC
Sbjct  279  QQIAQAL-ETMGEECRIVTNKTPDAQQVINAFRSNTCR-WIVAVGMISEGTDIPRLQVCC  336

Query  297  YLTKIKTELYFRQVLGRILRVTESPNQEAWLYTFAESNMIRCAEEIETDIPD  348
            YL++I+TEL +RQVLGR+LR T  ++++AWL+ +AE+++   AE I  D+PD
Sbjct  337  YLSRIRTELHYRQVLGRVLRRTGESDDQAWLFMLAEPKLQGFAERIADDLPD  388

43) MRBBS_3847 in NC_018268


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  286 bits (1071),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 161/370 (44%), Positives = 261/370 (71%), Gaps = 15/370 (4%)

Query  6    AELWQILSEHRVLVVLDEVHHCSGADWDNFATGNSWGRTIIDRVQGRARFTIALSGTPWR  65
              +WQ+L + RVLVV+DE+HHC+G   ++   +N+WG+ I++R+Q+RA FT+ALSGTPWR
Sbjct  102  EGFWQLLDDYRVLVVFDEIHHCAG---HDPLLSNAWGQQILHRIQDRAVFTLALSGTPWR  158

Query  66   TDDNPIVLSRYTQPDGQLHCDYEYGLKRAVIDGVCRAPKIVLTDNRKISLKSSV---VGF  122
            +DD++I L+RY+ P+G+L CDY YGLK A+ DGVCR+P+IVL DN+K+ L   +    + 
Sbjct  159  SDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSV  218

Query  123  KTYSSIRETIEHGHITYPDFLFRDEIIDHTLSEASKKLSEIRKYRPSAAGLVVAATVAHA  182
            + ++SI   + ++ +TY ++L +D++I+  L  +  KL+E+R+ +P AAGLVVA+ + HA
Sbjct  219  RLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHA  278

Query  183  EQIATRLLALGELAVMVTHKTPESQKIISDFKTSDDLWIISVGMISEGTDIPRLQVCCHL  242
            +QIA  L ++GE   +VT+KTP++Q++I+ F+++   WI++VGMISEGTDIPRLQVCC L
Sbjct  279  QQIAQALETMGEECRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCYL  338

Query  243  SRIRTELHFRQVLGRILRRQKEEHSDLGGWLYVLAEPSLTEFAQRIGDDLPEH-------  295
            SRIRTELH+RQVLGR+LRR  E + +  +WL++LAEP L  FA+RI+DDLP++       
Sbjct  339  SRIRTELHYRQVLGRVLRRTGESDDQ--AWLFMLAEPKLQGFAERIADDLPDDLAVLRDV  396

Query  296  QVVSFTPKTSGHSHSekkpemllkekpDTPWDLDIELPEAYNVAAADDHERRSMELSVSE  355
            Q+ +F P +  ++ +       + +      + +I    +  ++ ++  +  + ++S S+
Sbjct  397  QMPGFNPDSRPEPMGASGHVKGIGDAGLGGAEPGIGSQATNIISLGGFANEPAYQVSFSQ  456

Query  356  HYWSEVLSLF  365
            HY+ ++L+ F
Sbjct  457  HYRQQLLACF  466

44) VPA1393 in NC_004605


> EF611303|6|G6|148807443|ABR13515.1|Pseudomonas_aeruginosa_PSE9|+|7016..8416|-|-|type 
III restriction enzyme
Length=466

 Score =  285 bits (1068),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 168/352 (48%), Positives = 256/352 (73%), Gaps = 5/352 (1%)

Query  1    MAAYLSKQLLDSNMIDLIICFSPSVNVANGFTRTFSRVLQCSFNGSLGALGTSLTYQAIQ  60
            MAA L+ +LL+ + IDL++CF+PS +V +GF  TFS VL   ++G +GA+G++ TYQA++
Sbjct  39   MAAELTSRLLQQDRIDLVLCFAPSCQVVEGFRSTFSEVLGRRLDGQMGAVGAAYTYQAME  98

Query  61   YLDEQFWETISKHRVLAIFDEIHHCSGETLSDANAWGEQIILKVQKASKYTLALTGTPWR  120
            Y DE FW+ +   RVL +FDEIHHC+G+    +NAWG+QI+ ++Q  + +TLAL+GTPWR
Sbjct  99   YRDEGFWQLLDDYRVLVVFDEIHHCAGHDPLLSNAWGQQILHRIQDRAVFTLALSGTPWR  158

Query  121  sdslpislssysNPEGKIICDYQYTLKQAITDRVCRKPKLVLVDNEQL----QYVSPEES  176
            SD  +I+L+ YS+PEG +ICDY+Y LK+AI+D VCR P++VL+DN+++    +  +    
Sbjct  159  SDDKAIALARYSSPEGHLICDYRYGLKDAIADGVCRSPRIVLLDNQKVKLTEELGADSSV  218

Query  177  KYYSSIQALFKEQKISYSSILQDTDALVHilklsaskllsirasNQDAGGLIVASSVAHA  236
            + ++SI  L+ E  ++Y  +L++ D +  IL L+ SKL  +R  + DA+GL+VA+ + HA
Sbjct  219  RLFPSIAKLLGESPVTYEELLRHDDVINPILDLGYSKLNELRQIKPDAAGLVVATDIEHA  278

Query  237  RQIQTILNEQLKQPSVMVSYHDPDAQKIIEQFKNGHSPWIISIGMISEGTDIPRLQVCCH  296
            +QI   L E + +   +V+   PDAQ++I+ F++    WI+++GMISEGTDIPRLQVCC 
Sbjct  279  QQIAQAL-ETMGEECRIVTNKTPDAQQVINAFRSNTCRWIVAVGMISEGTDIPRLQVCCY  337

Query  297  LSNVRTELYFRQVLGRILRITDSNNQEAWLYTLAEENLVKFAEEIEQDIPDS  348
            LS +RTEL +RQVLGR+LR T+ ++++AWL+ LAE +L  FAE I +D+PD 
Sbjct  338  LSRIRTELHYRQVLGRVLRRTGESDDQAWLFMLAEPKLQGFAERIADDLPDD  389