> AF034434|6|G5|3004928|AAC12276.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|+|8508..11843|-|-|putative
inner membrane protein
Length=1111
Score = 1724 bits (6547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1111/1111 (100%), Positives = 1111/1111 (100%), Gaps = 0/1111 (0%)
Query 423 MVEYVGDDPSELYDMLLLTINYGNLSGIDFSREIFNKNKDIIVDYKKGTINHRGITGGFL 482
MVEYVGDDPSELYDMLLLTINYGNLSGIDFSREIFNKNKDIIVDYKKGTINHRGITGGFL
Sbjct 1 MVEYVGDDPSELYDMLLLTINYGNLSGIDFSREIFNKNKDIIVDYKKGTINHRGITGGFL 60
Query 483 GKTFAQVAAILYQKSIEELSYIELLSTKNALESIGIDTVYPYGSMDNIKASLFLRVNNNL 542
GKTFAQVAAILYQKSIEELSYIELLSTKNALESIGIDTVYPYGSMDNIKASLFLRVNNNL
Sbjct 61 GKTFAQVAAILYQKSIEELSYIELLSTKNALESIGIDTVYPYGSMDNIKASLFLRVNNNL 120
Query 543 SKRLLPEEVGIGSEPFIIDELLARNNQLTMFNFSNALDKLTEDIYSNANLYRSDNVVRLY 602
SKRLLPEEVGIGSEPFIIDELLARNNQLTMFNFSNALDKLTEDIYSNANLYRSDNVVRLY
Sbjct 121 SKRLLPEEVGIGSEPFIIDELLARNNQLTMFNFSNALDKLTEDIYSNANLYRSDNVVRLY 180
Query 603 ADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRYWTRDASGNESG 662
ADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRYWTRDASGNESG
Sbjct 181 ADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRYWTRDASGNESG 240
Query 663 FNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDEL 722
FNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDEL
Sbjct 241 FNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTDEL 300
Query 723 FAKAQLYSYGLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGDVTTKGAQD 782
FAKAQLYSYGLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGDVTTKGAQD
Sbjct 301 FAKAQLYSYGLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGDVTTKGAQD 360
Query 783 LWRRKYQEISQVMAKYIATLISFKAKLEGKESWDIQSENKNRSVRFNFGFGITYYNMGNN 842
LWRRKYQEISQVMAKYIATLISFKAKLEGKESWDIQSENKNRSVRFNFGFGITYYNMGNN
Sbjct 361 LWRRKYQEISQVMAKYIATLISFKAKLEGKESWDIQSENKNRSVRFNFGFGITYYNMGNN 420
Query 843 GKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDFNSGSNNYPLYQ 902
GKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDFNSGSNNYPLYQ
Sbjct 421 GKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDFNSGSNNYPLYQ 480
Query 903 LMNSDYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTV 962
LMNSDYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTV
Sbjct 481 LMNSDYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLKTV 540
Query 963 QTDRDIAYQVLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGklsaka 1022
QTDRDIAYQVLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSAKA
Sbjct 541 QTDRDIAYQVLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSAKA 600
Query 1023 asskllPRNVKFVRNVIGLNKQGKYSLTSSQADRAFYKLKIQGKLKELPKVILNELNPIA 1082
ASSKLLPRNVKFVRNVIGLNKQGKYSLTSSQADRAFYKLKIQGKLKELPKVILNELNPIA
Sbjct 601 ASSKLLPRNVKFVRNVIGLNKQGKYSLTSSQADRAFYKLKIQGKLKELPKVILNELNPIA 660
Query 1083 GLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSVSYLDDGYLIIN 1142
GLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSVSYLDDGYLIIN
Sbjct 661 GLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSVSYLDDGYLIIN 720
Query 1143 NQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLVSL 1202
NQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLVSL
Sbjct 721 NQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLVSL 780
Query 1203 MNNTKVCHFTNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEyllklnsslslnynI 1262
MNNTKVCHFTNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNYNI
Sbjct 781 MNNTKVCHFTNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNYNI 840
Query 1263 DIDTLNWVFDTIENSGMSRYAFTPFVKNTDAIMYDMLGKFYNNNMSIKPVFLNKSQYKKL 1322
DIDTLNWVFDTIENSGMSRYAFTPFVKNTDAIMYDMLGKFYNNNMSIKPVFLNKSQYKKL
Sbjct 841 DIDTLNWVFDTIENSGMSRYAFTPFVKNTDAIMYDMLGKFYNNNMSIKPVFLNKSQYKKL 900
Query 1323 KKTLDSDKELIINVISEQRKINLNEAQQLFDEFYASVTKDPIFGLDSITHDRPVIHVVGH 1382
KKTLDSDKELIINVISEQRKINLNEAQQLFDEFYASVTKDPIFGLDSITHDRPVIHVVGH
Sbjct 901 KKTLDSDKELIINVISEQRKINLNEAQQLFDEFYASVTKDPIFGLDSITHDRPVIHVVGH 960
Query 1383 GDAGDEVIYPGDASHYFYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLT 1442
GDAGDEVIYPGDASHYFYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLT
Sbjct 961 GDAGDEVIYPGDASHYFYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEVLT 1020
Query 1443 RMNKGDYTPLFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQG 1502
RMNKGDYTPLFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQG
Sbjct 1021 RMNKGDYTPLFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANTQG 1080
Query 1503 RFHAVEMNFSDGKFFFKKEDAEVIYGSYKNK 1533
RFHAVEMNFSDGKFFFKKEDAEVIYGSYKNK
Sbjct 1081 RFHAVEMNFSDGKFFFKKEDAEVIYGSYKNK 1111
Score = 55.8 bits (192), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (29%), Positives = 97/193 (51%), Gaps = 37/193 (19%)
Query 241 RTKDKINNFIKEKIVKPAVEVGIVDRKF------------QESKYIDELRQR-LLKSLNQ 287
+ KD I ++ K I ++ G++++ F +E YI+ L + L S+
Sbjct 37 KNKDIIVDYKKGTINHRGITGGFLGKTFAQVAAILYQKSIEELSYIELLSTKNALESIGI 96
Query 288 DHYFEYGSEKNLQLSLVMMFSDLYSQPILSYGKTIPAYSDSFFSD---LWESMLS--GFI 342
D + YGS N++ SL + ++ S+ +L+ I S++F+ D +++ L+ F
Sbjct 97 DTVYPYGSMDNIKASLFLRVNNNLSKRLLPEEVGIG--SEPFIIDELLARNNQLTMFNFS 154
Query 343 NSIEP-----------------VKLYEHESYHGHSISLNMDSEFLHGFNDIASSIKIPKG 385
N+++ V+LY +++Y GH I ++ + FLHGFND SS IP G
Sbjct 155 NALDKLTEDIYSNANLYRSDNVVRLYADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHG 214
Query 386 WQVTLFEHGGYTG 398
W V ++EHG+Y G
Sbjct 215 WSVRFYEHGDYQG 227 |