Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of ECO103_3595 gene of NC_013353_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ROD_49621
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-302

91.6

2) ROD_10891
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-175

84.9

3) G2583_4403
( - )

NC_013941
(Escherichia coli CB9615)

e-138

85.4

4) ECSP_4659
( - )

NC_013008
(Escherichia coli TW14359)

e-138

84.9

• Sequence Alignments

1) ROD_49621 in NC_013716


>NC_013353_P1|59|G35|260845674|YP_003223452.1|Escherichia_coli_O103:H2_str._12009|+|46424..47266|-|ECO103_3595|hypothetical 
          Length = 843

 Score = 1034 bits (2668), Expect = e-302
 Identities = 556/603 (92%)
 Strand = Plus / Plus

Query: 238 gaaacggcaatgaaagccatcacccgcaatctcgatcgcgaaatctggcgtgacctgatg 297
           ||||| ||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct: 238 gaaaccgcaatgaaagctatcacccgcaaccttgaccgcgaaatctggcgtgacctgatg 297

Query: 298 caacgttcctggatgctgtcattaatggatgcgcaggcccgtgatacatggtaccggtca 357
           ||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 298 caacgttcagggatgctgtcattaatggatgcacaggcacgtgatacatggtaccgatca 357

Query: 358 ctggagtacgataattttccggaaattagcgaagcgaacattctgagcacatttgaacaa 417
           |||||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 358 ctggagtacgataattttccggaaatcagcgaggcgaatatcctgagtacgtttgaacaa 417

Query: 418 ctgcaccagaacaaggatgaggtgtttgagcgaggagtggtcaacgtcttcaggggactg 477
           ||||||||||| ||||| || || ||||||||||| ||| ||||| ||||||| || |||
Sbjct: 418 ctgcaccagaataaggacgaagtatttgagcgaggtgtgatcaacctcttcagagggctg 477

Query: 478 agctagaattacaaaactaattcaccctgcaaatttggcagtaaaattatcgtcaacaac 537
           |||| |||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||
Sbjct: 478 agctggaattacaaaaccaattgcccctgtaaatttggcagtaaaattatcgtcaacaac 537

Query: 538 ctggtgaggtgggaccggtggggatttcatcttatcaccgggcaacaggcagaccgactt 597
           || |||||||||||||||||||| |||||||||||||||||||||||| | |||||||| 
Sbjct: 538 ctagtgaggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactc 597

Query: 598 gccgacctggaaagaatgctgcatctgttcagcggcaaaccgatccccgacaaccgggaa 657
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtcgacctggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaa 657

Query: 658 aacatcactattcatctggatgagcacatccggtctgttcagggtaaagagtgctatgaa 717
           ||||||||||||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||
Sbjct: 658 aacatcactattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaa 717

Query: 718 gatgaaatgttcagaattaaatactttaagaagggatctgcacacatcactttcaaaagg 777
           || || |||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gacgagatgttcatcattaaatactttaagaagggatctgcacacatcactttcaaaagg 777

Query: 778 ctggaactgattgacagaattaacgatataatagccaggtactttccttctgtgctctca 837
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctggaactgattgacagaattaacgatataatagccaggtactttccttctgtgctctca 837

Query: 838 gcc 840
           |||
Sbjct: 838 gcc 840


 Score = 375 bits (968), Expect = e-104
 Identities = 212/236 (90%)
 Strand = Plus / Plus

Query: 1   atgtcagatatcacaatctcccgcccggaactggtcaacgggcatacggacgttatctgc 60
           ||||| |||||||||  |||||| |||||| ||||||||||||||||||||||||| |||
Sbjct: 1   atgtctgatatcacagcctcccgtccggaagtggtcaacgggcatacggacgttatttgc 60

Query: 61  tcaaccagtatccgccacattctggctgtacgaaagagtacgttgctgcaaatcgacaca 120
           ||||||    || ||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 61  tcaacctcagtcagccacattctggctgtacgaaagagtacactgctgcaaatcgacaca 120

Query: 121 cttacccggcaactggtagaaatctcagcaatgacagaaagtattggcggtaaaaccgca 180
           |||| |||||||||||  ||||||||||  ||||| ||||| |||||||||||||| |||
Sbjct: 121 cttatccggcaactggctgaaatctcagttatgacggaaagcattggcggtaaaactgca 180

Query: 181 ctggactgggcgatgaaacaggattttcgctgcggttgctggctgatgga-aaaac 235
           ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 181 ctggactgggccatgaaacaggattttcgctgcggctgctggctgatggagaaaac 236

2) ROD_10891 in NC_013716


>NC_013353_P1|59|G35|260845674|YP_003223452.1|Escherichia_coli_O103:H2_str._12009|+|46424..47266|-|ECO103_3595|hypothetical 
          Length = 843

 Score = 612 bits (1579), Expect = e-175
 Identities = 375/453 (83%)
 Strand = Plus / Plus

Query: 1   atgtcagatatcacaatctccagtctggaagtggtcaacgggcatacggatgttatctgc 60
           ||||| |||||||||  |||| ||| |||||||||||||||||||||||| ||||| |||
Sbjct: 1   atgtctgatatcacagcctcccgtccggaagtggtcaacgggcatacggacgttatttgc 60

Query: 61  tccaccagtatccgacacgttgtgacggtacggaatatagcactgcaacaaaccgaagcg 120
           || |||    || | ||| || || | ||||| || |   ||||||  |||| |||  | 
Sbjct: 61  tcaacctcagtcagccacattctggctgtacgaaagagtacactgctgcaaatcgacaca 120

Query: 121 cttatccggcaactggcagaaaactcagcactgacagaaatgattggaggtaaaaccgcc 180
           ||||||||||||||||| |||| |||||   |||| ||||  ||||| |||||||| || 
Sbjct: 121 cttatccggcaactggctgaaatctcagttatgacggaaagcattggcggtaaaactgca 180

Query: 181 ctggactgggccgatgaaacaggattttcgctgtggctgctggctgacggagaaacctga 240
           |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| | ||
Sbjct: 181 ctggactgggcc-atgaaacaggattttcgctgcggctgctggctgatggagaaaacgga 239

Query: 241 aaccgcgatgaaaaccatcacctggaatctcgaccgtgaaatctggcgtgacctgatgca 300
           |||||| |||||| | |||||| | || || ||||| |||||||||||||||||||||||
Sbjct: 240 aaccgcaatgaaagctatcacccgcaaccttgaccgcgaaatctggcgtgacctgatgca 299

Query: 301 acgttccgggatgctgagtctgatggatgcacaggacggcgatacatggcagcggtcact 360
           |||||| |||||||||    | |||||||||||||   | ||||||||| | || |||||
Sbjct: 300 acgttcagggatgctgtcattaatggatgcacaggcacgtgatacatggtaccgatcact 359

Query: 361 ggagtacgataattttccggaaatcagtgaagagaatatcctgagcagatttgaacaact 420
           ||||||||||||||||||||||||||| || | |||||||||||| |  |||||||||||
Sbjct: 360 ggagtacgataattttccggaaatcagcgaggcgaatatcctgagtacgtttgaacaact 419

Query: 421 gcaccagagcagggatgaggtgtttgagcgagg 453
           ||||||||  | ||| || || |||||||||||
Sbjct: 420 gcaccagaataaggacgaagtatttgagcgagg 452


 Score = 442 bits (1140), Expect = e-124
 Identities = 242/275 (88%)
 Strand = Plus / Plus

Query: 480 agctgggattacaaaaccaacacaccctgtaaatttggcagtaaaattatcgtcaacaat 539
           |||||| |||||||||||||    ||||||||||||||||||||||||||||||||||| 
Sbjct: 478 agctggaattacaaaaccaattgcccctgtaaatttggcagtaaaattatcgtcaacaac 537

Query: 540 ctggtgagatgggaccggtggggatttcatcttatcaccgggcaacaggccgaccgactt 599
           || ||||| |||||||||||||| |||||||||||||||||||||||| | |||||||| 
Sbjct: 538 ctagtgaggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactc 597

Query: 600 gccgatctggaaagaatactgcatctgttcagcaataaaccagtccccgattgcagggaa 659
           | ||| ||||||||||| || ||||||||||||   |||||  |||||||   | |||||
Sbjct: 598 gtcgacctggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaa 657

Query: 660 aacatcaccattcatctggatgaccacatccagtctgttcagggtaaagagtgctatgaa 719
           |||||||| |||| ||||||||  ||||||||||| ||||||||||||||| ||||||||
Sbjct: 658 aacatcactattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaa 717

Query: 720 gatgagatgttcatcattaaatattttaagaaggg 754
           || |||||||||||||||||||| |||||||||||
Sbjct: 718 gacgagatgttcatcattaaatactttaagaaggg 752

3) G2583_4403 in NC_013941


>NC_013353_P1|59|G35|260845674|YP_003223452.1|Escherichia_coli_O103:H2_str._12009|+|46424..47266|-|ECO103_3595|hypothetical 
          Length = 843

 Score = 489 bits (1262), Expect = e-138
 Identities = 277/314 (88%)
 Strand = Plus / Plus

Query: 165 cattggcggcaaaaccgccctggaccgggcgatgaaacaggattttcactgcggctgctg 224
           ||||||||| ||||| || |||||| |||| |||||||||||||||| ||||||||||||
Sbjct: 162 cattggcggtaaaactgcactggactgggccatgaaacaggattttcgctgcggctgctg 221

Query: 225 gctgatggagaaacctgaaaccgcaatgaaagccatcacccgcaacctcgactgcgaaat 284
           ||||||||||||| | ||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct: 222 gctgatggagaaaacggaaaccgcaatgaaagctatcacccgcaaccttgaccgcgaaat 281

Query: 285 ctggcgtgacctgatgcaacgctccgggatgctgagtctgatggatgcacagggctagga 344
           ||||||||||||||||||||| || |||||||||    | |||||||||||||     ||
Sbjct: 282 ctggcgtgacctgatgcaacgttcagggatgctgtcattaatggatgcacaggcacgtga 341

Query: 345 tacatggtaccgctcactggagtacgataatattccggaaatcagcgaggcgaatatcat 404
           |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 342 tacatggtaccgatcactggagtacgataattttccggaaatcagcgaggcgaatatcct 401

Query: 405 gaatgcattcaaacaactgcaccagagtaaggatgaagtgtttgagcgtggggtgatcaa 464
           || | | ||  ||||||||||||||| |||||| ||||| |||||||| || ||||||||
Sbjct: 402 gagtacgtttgaacaactgcaccagaataaggacgaagtatttgagcgaggtgtgatcaa 461

Query: 465 cgtcttcagagggc 478
           | ||||||||||||
Sbjct: 462 cctcttcagagggc 475


 Score = 341 bits (879), Expect = 8e-94
 Identities = 200/242 (83%)
 Strand = Plus / Plus

Query: 484 ggaattacaaaaccaattccccctgtaaattcggcagtaaaattatcgtcaacaacttgg 543
           |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |
Sbjct: 482 ggaattacaaaaccaattgcccctgtaaatttggcagtaaaattatcgtcaacaacctag 541

Query: 544 tgagatggtacagatggagatttcatcttatcagtggaatgcaggcagatcgcttagctg 603
           |||| ||| || | ||| | |||||||||||||  ||    ||| | || ||  | |  |
Sbjct: 542 tgaggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactcgtcg 601

Query: 604 acctggaaagaatgttgcatctgctcagcggtaaaccgctccccaacaaccgagggaata 663
           |||||||||||||| | |||||| ||||||| |||||| ||||| ||||||| |  || |
Sbjct: 602 acctggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaaaaca 661

Query: 664 tcaccattaatctggatgaccacctacagtccgttcagggtaaagagcgctatgaagaca 723
           |||| |||  ||||||||  ||| | ||||||||||||||||||||||||||||||||| 
Sbjct: 662 tcactattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaagacg 721

Query: 724 ag 725
           ||
Sbjct: 722 ag 723


 Score = 163 bits (421), Expect = 2e-40
 Identities = 106/132 (80%)
 Strand = Plus / Plus

Query: 18  ctcccgtccggaagtggacaccgggcatacggacgttatctgctccaccagtatccgaca 77
           ||||||||||||||||| || |||||||||||||||||| ||||| |||    || | ||
Sbjct: 18  ctcccgtccggaagtggtcaacgggcatacggacgttatttgctcaacctcagtcagcca 77

Query: 78  cgttgtgacggtacggaatgcagcactgcaacaaaccgaaacgcttatccggcaactggc 137
           | || || | ||||| ||     ||||||  |||| ||| || |||||||||||||||||
Sbjct: 78  cattctggctgtacgaaagagtacactgctgcaaatcgacacacttatccggcaactggc 137

Query: 138 agaaatctcagt 149
            |||||||||||
Sbjct: 138 tgaaatctcagt 149


 Score = 35 bits (89), Expect = 1e-01
 Identities = 18/18 (100%)
 Strand = Plus / Plus

Query: 726 taaatactttaagaaggg 743
           ||||||||||||||||||
Sbjct: 735 taaatactttaagaaggg 752


 Score = 26 bits (66), Expect = 6e+01
 Identities = 19/21 (90%)
 Strand = Plus / Plus

Query: 747 gcacacatcacattcagaaag 767
           ||||||||||| |||| ||||
Sbjct: 757 gcacacatcactttca-aaag 776

4) ECSP_4659 in NC_013008


>NC_013353_P1|59|G35|260845674|YP_003223452.1|Escherichia_coli_O103:H2_str._12009|+|46424..47266|-|ECO103_3595|hypothetical 
          Length = 843

 Score = 489 bits (1262), Expect = e-138
 Identities = 277/314 (88%)
 Strand = Plus / Plus

Query: 165 cattggcggcaaaaccgccctggaccgggcgatgaaacaggattttcactgcggctgctg 224
           ||||||||| ||||| || |||||| |||| |||||||||||||||| ||||||||||||
Sbjct: 162 cattggcggtaaaactgcactggactgggccatgaaacaggattttcgctgcggctgctg 221

Query: 225 gctgatggagaaacctgaaaccgcaatgaaagccatcacccgcaacctcgactgcgaaat 284
           ||||||||||||| | ||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct: 222 gctgatggagaaaacggaaaccgcaatgaaagctatcacccgcaaccttgaccgcgaaat 281

Query: 285 ctggcgtgacctgatgcaacgctccgggatgctgagtctgatggatgcacagggctagga 344
           ||||||||||||||||||||| || |||||||||    | |||||||||||||     ||
Sbjct: 282 ctggcgtgacctgatgcaacgttcagggatgctgtcattaatggatgcacaggcacgtga 341

Query: 345 tacatggtaccgctcactggagtacgataatattccggaaatcagcgaggcgaatatcat 404
           |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 342 tacatggtaccgatcactggagtacgataattttccggaaatcagcgaggcgaatatcct 401

Query: 405 gaatgcattcaaacaactgcaccagagtaaggatgaagtgtttgagcgtggggtgatcaa 464
           || | | ||  ||||||||||||||| |||||| ||||| |||||||| || ||||||||
Sbjct: 402 gagtacgtttgaacaactgcaccagaataaggacgaagtatttgagcgaggtgtgatcaa 461

Query: 465 cgtcttcagagggc 478
           | ||||||||||||
Sbjct: 462 cctcttcagagggc 475


 Score = 345 bits (891), Expect = 4e-95
 Identities = 201/242 (83%)
 Strand = Plus / Plus

Query: 484 ggaattacaaaaccaattccccctgtaaattcggcagtaaaattatcgtcaacaacttgg 543
           |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |
Sbjct: 482 ggaattacaaaaccaattgcccctgtaaatttggcagtaaaattatcgtcaacaacctag 541

Query: 544 tgagatgggacagatggagatttcatcttatcagtggaatgcaggcagatcgcttagctg 603
           |||| |||||| | ||| | |||||||||||||  ||    ||| | || ||  | |  |
Sbjct: 542 tgaggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactcgtcg 601

Query: 604 acctggaaagaatgttgcatctgctcagcggtaaaccgctccccaacaaccgagggaata 663
           |||||||||||||| | |||||| ||||||| |||||| ||||| ||||||| |  || |
Sbjct: 602 acctggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaaaaca 661

Query: 664 tcaccattaatctggatgaccacctacagtccgttcagggtaaagagcgctatgaagaca 723
           |||| |||  ||||||||  ||| | ||||||||||||||||||||||||||||||||| 
Sbjct: 662 tcactattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaagacg 721

Query: 724 ag 725
           ||
Sbjct: 722 ag 723


 Score = 163 bits (421), Expect = 2e-40
 Identities = 106/132 (80%)
 Strand = Plus / Plus

Query: 18  ctcccgtccggaagtggacaccgggcatacggacgttatctgctccaccagtatccgaca 77
           ||||||||||||||||| || |||||||||||||||||| ||||| |||    || | ||
Sbjct: 18  ctcccgtccggaagtggtcaacgggcatacggacgttatttgctcaacctcagtcagcca 77

Query: 78  cgttgtgacggtacggaatgcagcactgcaacaaaccgaaacgcttatccggcaactggc 137
           | || || | ||||| ||     ||||||  |||| ||| || |||||||||||||||||
Sbjct: 78  cattctggctgtacgaaagagtacactgctgcaaatcgacacacttatccggcaactggc 137

Query: 138 agaaatctcagt 149
            |||||||||||
Sbjct: 138 tgaaatctcagt 149