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Homologs of c5198 gene of NC_004431_P2

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) insD
( - )

NC_011742
(Escherichia coli S88)

8e-92

100

2) tnpF
( - )

NC_017633
(Escherichia coli ETEC H10407)

2e-87

97.1

3) EC042_pAA140
( - )

NC_017627
(Escherichia coli 042)

3e-80

96.9

4) unnamed
( - )

NC_007608
(Shigella boydii Sb227)

1e-67

5) unnamed
( - )

NC_007385
(Shigella sonnei Ss046)

1e-67

• Sequence Alignments

1) insD in NC_011742


>NC_004431_P2|59|G59|26251006|NP_757046.1|Escherichia_coli_CFT073|+|40006..40176|-|c5198|hypothetical 
          Length = 171

 Score = 334 bits (862), Expect = 8e-92
 Identities = 171/171 (100%)
 Strand = Plus / Plus

Query: 1   gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 60

Query: 61  gtgcataaccttgcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtgcataaccttgcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttg 120

Query: 121 ggttatcgctctccgcgagaatatcgacgtcagcgggtaacgttaacttaa 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttatcgctctccgcgagaatatcgacgtcagcgggtaacgttaacttaa 171

2) tnpF in NC_017633


>NC_004431_P2|59|G59|26251006|NP_757046.1|Escherichia_coli_CFT073|+|40006..40176|-|c5198|hypothetical 
          Length = 171

 Score = 319 bits (824), Expect = 2e-87
 Identities = 166/171 (97%)
 Strand = Plus / Plus

Query: 58  gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 60

Query: 118 ttgcataatcttgcagtggcgatcgaacattacaatgaaaaccatccgcacagtgcgttg 177
            ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  gtgcataaccttgcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttg 120

Query: 178 ggttatcgctctctgcgagaatatcgacgtcagcgggtaacgttaacttaa 228
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttatcgctctccgcgagaatatcgacgtcagcgggtaacgttaacttaa 171

3) EC042_pAA140 in NC_017627


>NC_004431_P2|59|G59|26251006|NP_757046.1|Escherichia_coli_CFT073|+|40006..40176|-|c5198|hypothetical 
          Length = 171

 Score = 296 bits (764), Expect = 3e-80
 Identities = 154/159 (97%)
 Strand = Plus / Plus

Query: 1   aaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggcattgcataatctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 13  aaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggcagtgcataacctt 72

Query: 61  gcagtggcgatcgaacattacaatgaaaaccatccgcacagtgcgttgggttatcgctct 120
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttgggttatcgctct 132

Query: 121 ccgcgagaatatcgacgtcagtgggtaacgttaacttaa 159
           ||||||||||||||||||||| |||||||||||||||||
Sbjct: 133 ccgcgagaatatcgacgtcagcgggtaacgttaacttaa 171

4) unnamed in NC_007608


>NC_004431_P2|59|G59|26251006|NP_757046.1|Escherichia_coli_CFT073|+|40006..40176|-|c5198|hypothetical 
          Length = 171

 Score = 254 bits (654), Expect = 1e-67
 Identities = 142/157 (90%)
 Strand = Plus / Plus

Query: 27  gtgaaaacgatgaaggaagactgcatcgcgttcatgccgaaacc------aagaacggca 80
           |||||||||||||||||||||| |||||||||||||||||||||      ||||||||||
Sbjct: 1   gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 60

Query: 81  ttgcataaccttgcagtggcgatcgagcattacaatgaaaaccatccgcatagtgcgttg 140
            |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  gtgcataaccttgcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttg 120

Query: 141 ggttatctctcaccaagggaatatcgacgtcagcggg 177
           ||||||| ||| ||  | |||||||||||||||||||
Sbjct: 121 ggttatcgctctccgcgagaatatcgacgtcagcggg 157

5) unnamed in NC_007385


>NC_004431_P2|59|G59|26251006|NP_757046.1|Escherichia_coli_CFT073|+|40006..40176|-|c5198|hypothetical 
          Length = 171

 Score = 254 bits (654), Expect = 1e-67
 Identities = 142/157 (90%)
 Strand = Plus / Plus

Query: 27  gtgaaaacgatgaaggaagactgcatcgcgttcatgccgaaacc------aagaacggca 80
           |||||||||||||||||||||| |||||||||||||||||||||      ||||||||||
Sbjct: 1   gtgaaaacgatgaaggaagactacatcgcgttcatgccgaaaccgaatgtaagaacggca 60

Query: 81  ttgcataaccttgcagtggcgatcgagcattacaatgaaaaccatccgcatagtgcgttg 140
            |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  gtgcataaccttgcagtagcgatcgagcattacaatgaaaaccatccgcacagtgcgttg 120

Query: 141 ggttatctctcaccaagggaatatcgacgtcagcggg 177
           ||||||| ||| ||  | |||||||||||||||||||
Sbjct: 121 ggttatcgctctccgcgagaatatcgacgtcagcggg 157