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PAthogenisity Island DataBase (PAI DB)

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Homologs of SAUSA300_1438 gene of NC_007793_P4

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CA347_1485
( YP_008128343.1 )

phage integrase family protein

NC_021554
(Staphylococcus aureus CA-347)

5e-161

100

2) SAUSA300_1438
( YP_494135.1 )

phiSLT ORF401-like protein, integrase

NC_007793
(Staphylococcus aureus FPR3757)

5e-161

100

3) SAEMRSA15_14090
( YP_006237753.1 )

phage integrase

NC_017763
(Staphylococcus aureus HO 5096 0412)

5e-161

100

4) SAA6159_01417
( YP_005739563.1 )

pathogenicity island protein, integrase

NC_017338
(Staphylococcus aureus JKD6159)

5e-161

100

5) M013TW_1502
( YP_005297931.1 )

phage integrase

NC_016928
(Staphylococcus aureus M013)

5e-161

100

6) BN843_14930
( YP_007868558.1 )

Phage integrase

NC_021059
(Staphylococcus aureus M1)

5e-161

100

7) SA957_1443
( YP_008585538.1 )

integrase

NC_022442
(Staphylococcus aureus SA957)

5e-161

100

8) USA300HOU_1490
( YP_001575377.1 )

integrase

NC_010079
(Staphylococcus aureus TCH1516)

5e-161

100

9) SABB_00412
( YP_008168652.1 )

putative phage integrase

NC_021670
(Staphylococcus aureus Bmb9393)

5e-161

10) int2
( YP_005747735.1 )

prophage L54a integrase

NC_017342
(Staphylococcus aureus TCH60)

7e-161

11) SAOUHSC_01582
( YP_500097.1 )

bacteriophage integrase

NC_007795
(Staphylococcus aureus NCTC 8325)

5e-160

12) SAPIG1554
( YP_005734350.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

6e-157

13) SAAG_01400
( YP_008449411.1 )

integrase

NC_022113
(Staphylococcus aureus 55/2053)

1e-155

14) SAR1562
( YP_040964.1 )

phage integrase

NC_002952
(Staphylococcus aureus MRSA252)

1e-155

15) int
( NP_646259.1 )

integrase

NC_003923
(Staphylococcus aureus MW2)

1e-155

16) SAOV_0274
( YP_005735791.1 )

putative prophage integrase

NC_017337
(Staphylococcus aureus ED133)

2e-145

17) SAB0258c
( YP_415762.1 )

phage-related integrase

NC_007622
(Staphylococcus aureus RF122)

2e-144

18) SAPIG0334
( YP_005733144.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

2e-139

19) C248_0310
( YP_006709071.1 )

phage integrase family protein

NC_018608
(Staphylococcus aureus 08BA02176)

1e-137

20) SAS0891
( YP_043018.1 )

phage integrase

NC_002953
(Staphylococcus aureus MSSA476)

1e-133

21) SaurJH1_1039
( YP_001316182.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

1e-132

22) SaurJH9_1020
( YP_001246397.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

1e-132

23) int
( YP_185210.1 )

prophage L54a, integrase

NC_002951
(Staphylococcus aureus COL)

3e-132

24) SaurJH1_0311
( YP_001315460.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

1e-131

25) SaurJH9_0304
( YP_001245687.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

1e-131

26) int
( YP_001331297.1 )

integrase

NC_009641
(Staphylococcus aureus Newman)

1e-131

27) SATW20_03260
( YP_005730346.1 )

phage integrase

NC_017331
(Staphylococcus aureus TW20)

1e-131

28) int
( YP_254496.1 )

integrase

NC_007168
(Staphylococcus haemolyticus JCSC1435)

3e-78

29) A284_11360
( YP_007386029.1 )

Integrase

NC_020164
(Staphylococcus warneri SG1)

3e-78

30) int
( YP_008167977.1 )

Integrase

NC_021670
(Staphylococcus aureus Bmb9393)

1e-72

31) SAAG_01239
( YP_008448745.1 )

integrase

NC_022113
(Staphylococcus aureus 55/2053)

1e-71

32) int3
( YP_005748445.1 )

prophage L54a integrase

NC_017342
(Staphylococcus aureus TCH60)

1e-71

33) SLGD_02010
( YP_003472225.1 )

pathogenicity island protein, integrase

NC_013893
(Staphylococcus lugdunensis HKU09-01)

3e-71

34) SARLGA251_07460
( YP_005754746.1 )

integrase

NC_017349
(Staphylococcus aureus LGA251)

3e-71

35) SAAV_0787
( YP_003281710.1 )

pathogenicity island protein, integrase

NC_013450
(Staphylococcus aureus ED98)

4e-70

36) SACOL0885
( YP_185756.1 )

pathogenicity island protein, integrase

NC_002951
(Staphylococcus aureus COL)

1e-61

37) int
( YP_493499.1 )

integrase

NC_007793
(Staphylococcus aureus FPR3757)

1e-61

38) M013TW_0806
( YP_005297248.1 )

Integrase, superantigen-encoding pathogenicityislands SaPI

NC_016928
(Staphylococcus aureus M013)

1e-61

39) SA40_0754
( YP_008587399.1 )

integrase

NC_022443
(Staphylococcus aureus SA40)

1e-61

40) SA957_0769
( YP_008584867.1 )

integrase

NC_022442
(Staphylococcus aureus SA957)

1e-61

41) USA300HOU_0850
( YP_001574750.1 )

integrase

NC_010079
(Staphylococcus aureus TCH1516)

1e-61

42) int
( YP_005744209.1 )

pathogenicity island protein, integrase

NC_017341
(Staphylococcus aureus JKD6008)

1e-61

43) rbsU
( YP_005752134.1 )

Pathogenicity island protein, integrase

NC_017347
(Staphylococcus aureus T0131)

1e-61

44) SATW20_08890
( YP_005730901.1 )

integrase

NC_017331
(Staphylococcus aureus TW20)

1e-61

• Sequence Alignments

1) CA347_1485 in NC_021554


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

2) SAEMRSA15_14090 in NC_017763


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

3) SAA6159_01417 in NC_017338


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

4) M013TW_1502 in NC_016928


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

5) BN843_14930 in NC_021059


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

6) SA957_1443 in NC_022442


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

7) SAUSA300_1438 in NC_007793


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

8) USA300HOU_1490 in NC_010079


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

9) SABB_00412 in NC_021670


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2115),  Expect = 5e-161, Method: Compositional matrix adjust.
 Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEDGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYE+GFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

10) int2 in NC_017342


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  560 bits (2113),  Expect = 7e-161, Method: Compositional matrix adjust.
 Identities = 399/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikiriknikrYCSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRI+NIKRY SENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

11) SAOUHSC_01582 in NC_007795


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  557 bits (2102),  Expect = 5e-160, Method: Compositional matrix adjust.
 Identities = 397/401 (99%), Positives = 399/401 (99%), Gaps = 0/401 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikiriknikrYCSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRI+NIKRY SENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLQKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKL+KRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEKGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYE GFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

12) SAPIG1554 in NC_017333


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  547 bits (2064),  Expect = 6e-157, Method: Compositional matrix adjust.
 Identities = 393/394 (99%), Positives = 394/394 (100%), Gaps = 0/394 (0%)

Query  5    NKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikeklnnksssel  64
            NKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSEL
Sbjct  8    NKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSEL  67

Query  65   kTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTKYMQIFIN  124
            KTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQIFIN
Sbjct  68   KTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQIFIN  127

Query  125  KLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMY  184
            KLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMY
Sbjct  128  KLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMY  187

Query  185  NYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKT  244
            NYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKT
Sbjct  188  NYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKT  247

Query  245  INITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKRWNSSYVD  304
            INITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVD
Sbjct  248  INITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVD  307

Query  305  RGFIFTTKKGNPLCNNQITGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMK  364
            RGFIFTTKKGNPLCNNQI+GVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMK
Sbjct  308  RGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMK  367

Query  365  RVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  398
            RVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  368  RVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

13) SAAG_01400 in NC_022113


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  543 bits (2048),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

14) SAR1562 in NC_002952


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  543 bits (2048),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

15) int in NC_003923


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  543 bits (2048),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGSKLTTLnnikirirnikrYSSENLLLNKLDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180
            YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240
            KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  IDLLNKTINITGTIHRIKYEEGFGYKDttktisskrsisinsrtVEIFKKIILENKMLKR  300
            IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360
            WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401
            SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

16) SAOV_0274 in NC_017337


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  509 bits (1919),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 297/399 (75%), Positives = 357/399 (90%), Gaps = 0/399 (0%)

Query  1    MWIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLH  60
            MWIEKFKNKNNET YRYYEKYKDPYTDKWKRVSVVLNKNTKQ+QKEAMFRLEEKIKEKL+
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +KSS+ELKTLTFH+LLDEWLEYH KTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDSNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILND++++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI+I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPNYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W+++YVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

17) SAB0258c in NC_007622


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  505 bits (1905),  Expect = 2e-144, Method: Compositional matrix adjust.
 Identities = 297/399 (75%), Positives = 355/399 (89%), Gaps = 0/399 (0%)

Query  1    MWMEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVALNKNTKQAQKEAMFRLEEKIKEKLH  60
            MW+EKFKNKNNET YRYYEKYKDPYTDKWKRVSV LNKNTKQ+QKEAMFRLEEKIKEKL+
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKSSSILKTLTFHSLLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            +KSSS LKTLTFH+LLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQGIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+Q +QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI+I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

18) SAPIG0334 in NC_017333


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  489 bits (1843),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 299/399 (75%), Positives = 358/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEDKIKEKLN  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLE+KIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   NQSSSILKTLTFHTLLDEWFEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            N+SSS LKTLTFH+LLDEW+EYH KTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNIYSENQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS+IYS+NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI+I GTIHRIK + GFG KDTTKT +S+R I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

19) C248_0310 in NC_018608


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  482 bits (1819),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 306/399 (77%), Positives = 359/399 (90%), Gaps = 0/399 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI+I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

20) SAS0891 in NC_002953


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  469 bits (1769),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 314/399 (79%), Positives = 363/399 (91%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHTLLDEWLEYHIKTSGSKVTTLNNIKTRVKNIKKNSAKELLLNKLDTK  120
            NKSSSELKTLTFH+LLDEWLEYHIKTSGSK+TTLNNIK R++NIK+ S+ +LLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE  180
            YMQ+FINKLS IYS NQ+  QLG+MK AIKYAVKFY+YPNE LLT VK+PK+RKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD  240
            KDE+KMYNYLE++QV+QIRD ILN N LH R RILIA+ LEVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQ  300
            +DL NKTI+I GT+HRIK + GFGYKDTTKT +SKR+I+INSRT  ++KKI+LENK +K+
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNV  360
            W++SY+DRGF+FTT KGNPL  ++I  +L  ++ +LN+NKKVTTHT+RHTHI+LLVEMNV
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL +KLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

21) SaurJH1_1039 in NC_009632


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  466 bits (1756),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 313/399 (79%), Positives = 363/399 (91%), Gaps = 0/399 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNK+TKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            NKSSSELKTLTFH+LL+EWLEYHIKTSGSK+TTLNNIK R++NIK+ SS +LLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE  180
            YMQ+FINKLS IYS NQ+  QLG+MK AIKYAVKFY+YPNE LLT VK+PK+RKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD  240
            KDE+KMYNYLE++QV+QIRD ILN N LH R RILIA+ LEVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQ  300
            +DL NKTI+I GT+HRIK + GFGYKDTTKT +SKR+I+INSRT  ++KKI+LENK +K+
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNI  360
            W++SY+DRGF+FTT KGNPL  ++I  +L  ++ +LN+NKKVTTHT+RHTHI+LLVEMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL +KLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

22) SaurJH9_1020 in NC_009487


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  466 bits (1756),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 313/399 (79%), Positives = 363/399 (91%), Gaps = 0/399 (0%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNK+TKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            NKSSSELKTLTFH+LL+EWLEYHIKTSGSK+TTLNNIK R++NIK+ SS +LLLNKLDTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE  180
            YMQ+FINKLS IYS NQ+  QLG+MK AIKYAVKFY+YPNE LLT VK+PK+RKTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KDEAKMYNYLELQQVIQIRDFILNYNSLHYRTRILIAGALEVQALTGMRIGELLALQIKD  240
            KDE+KMYNYLE++QV+QIRD ILN N LH R RILIA+ LEVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTLHRIKCNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIMLENKKMKQ  300
            +DL NKTI+I GT+HRIK + GFGYKDTTKT +SKR+I+INSRT  ++KKI+LENK +K+
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHISLLVEMNI  360
            W++SY+DRGF+FTT KGNPL  ++I  +L  ++ +LN+NKKVTTHT+RHTHI+LLVEMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL +KLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

23) int in NC_002951


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  465 bits (1751),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 305/399 (77%), Positives = 359/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI+I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

24) SaurJH1_0311 in NC_009632


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  463 bits (1743),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 305/399 (77%), Positives = 358/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

25) SaurJH9_0304 in NC_009487


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  463 bits (1743),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 305/399 (77%), Positives = 358/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

26) int in NC_009641


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  463 bits (1743),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 305/399 (77%), Positives = 358/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

27) SATW20_03260 in NC_017331


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  463 bits (1743),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 305/399 (77%), Positives = 358/399 (90%), Gaps = 0/399 (0%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+EKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            NKSSSELKTLTFHALLDEWLEYHIKTSG K+TTL+N+K RI+NIK+ SS+NLLLNK+DTK
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            YMQ FIN LS++YS NQV RQLG+MK AIKYAVKFYNYPNE +L +V +PK+ KTIEDIE
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  181  KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD  240
            K+E+KMYNYLEM+QV+QIRD ILNDN+++ R RIL+A+ +EVQALTGMRIGEL ALQ KD
Sbjct  181  KDESKMYNYLEMNQVLQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGELQALQEKD  240

Query  241  VDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ  300
            +DL NKTI I GTIHRIK + GFG KDTTKT +SKR I+INSR  +++KKI+LENK +++
Sbjct  241  IDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKR  300

Query  301  WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI  360
            W++SYVDRGFIFTT +GNP+  ++I   L  ++ +LN+NKKVTTHT+RHTHI+LL EMN+
Sbjct  301  WNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNV  360

Query  361  SLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLEKL  399
            SLKAIMKRVGH DEKTTI++YTHVTEKMDREL QKLE++
Sbjct  361  SLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

28) int in NC_007168


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 193/408 (48%), Positives = 293/408 (72%), Gaps = 11/408 (2%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRTSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDP T+KW+R SVVLNKN KQSQKEA  RL+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTNLKTLTFHAACDEWFERYKL-TSGSKQSTITTKSYKVAHIKRNIDKDILVENMNA  119
            +K++++LKTLTFHA  DEW+E Y + TSGSK +T+     ++ +IKR    ++L++++++
Sbjct  61   NKSSSELKTLTFHALLDEWLE-YHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDT  119

Query  120  DVIQDLINSSLKDGLSHKLVKDDLSIIKNILRYAQKKYHITDISYIDDVVMPKKATTREE  179
              +Q +IN  L D  S++ V  +L+ +K  ++YA K Y+  +   + +V +PK+  T E+
Sbjct  120  KYMQIFINK-LSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIED  178

Query  180  VK---AKRENYLEMAEVLAIVEELNRIANKKRASYMKRSYLFTAYIVEFQVLNGMRIGEL  236
            +    +K  NYLEM +VL I +++  + ++K     KR+ ++ A I+E Q L GMRIGEL
Sbjct  179  IEKDESKMYNYLEMNQVLQIRDHI--LNDNKLH---KRNRILIASILEVQALTGMRIGEL  233

Query  237  LAIQPDNIDFENKKLVIDGTIHWRKDGNKVGFKDTTKTASSYRTISLTTRSCDILRRVML  296
             A+Q  +ID+ NK + I GTIH+ K  +  G+KDTTKT SS R+IS+ +R+ +I+++++L
Sbjct  234  QALQEKDIDLLNKTINITGTIHRIKYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  297  ENKKAVQWEIMYVDRGFIFTSHRGNSLPLTSinrniqiaaqnigiEKHVTSHTMRHSHIS  356
            ENK   +W+  YVDRGFIFT+ +GN+L    I   ++ +++ + ++K VT+HT RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  357  LLSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKLEKIRS  404
            LL ++ VSL+AIM RVGH D+KTT++IY+HVTE+MD+++ +KLE+I S
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIPS  401

29) A284_11360 in NC_020164


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  285 bits (1067),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 289/407 (72%), Gaps = 10/407 (2%)

Query  1    MWHEKFTNKHGNVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW EKF NK+ + +YRYYEKYKDP T+KW+RVSVVLNKN KQSQKEA  RL+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHAACDEWLEYYKNHSGSKATTIKEKVSNTNTVKNSIDKEVLINNITHT  120
            +K+++ LK+LTFHA  DEWLEY  + SGSK TT+++       +K     ++L+N++   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YLQDIINEWAKLHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTRDEL-  179
            Y+Q +IN  + + S+ +V   +  +++ +KYA K+Y+  +  +L ++ IPK+ KT +++ 
Sbjct  121  YMQIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIE  180

Query  180  --QAKRNNYLEDSEVKELLECFDYLIKHKNHSSRKRNYNMVKAIVQFQIANGMRIGELLA  237
              ++K  NYL   E++++L+  D ++++++   R+R   ++ +I++ Q   GMRIGEL A
Sbjct  181  KDESKMYNYL---EMNQVLQIRDHILNDNKLHKRNR--ILIASILEVQALTGMRIGELQA  235

Query  238  IKSDNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGITTQSINLLKTLIL  297
            ++  +I+  +KT++I GTI+++  K   +FG K+TTKT  S R+I+I +++++++K +IL
Sbjct  236  LQEKDIDLLNKTINITGTIHRI--KYEEGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  298  ENKKENQWNDNFIDRGYIFTNTAGSPIDLNKINTIIKEATEISSIKKSVTTHTLRHTHIS  357
            ENK  ++WN +++DRG+IFT   G+P+  N+I  ++K +T   +++K VTTHT+RHTHI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  358  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMNKLEKVG  404
             L ++ ++LKAI  RVGH D KTT+ IYTHVT++M +++ +KLE++ 
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENIP  400

30) int in NC_021670


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 189/406 (47%), Positives = 292/406 (72%), Gaps = 10/406 (2%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDP T+KW+RVSVVLNKN KQSQKEA  RL+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +++++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y  Q+F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YM-QIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  ---KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  237
                +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIGE+ 
Sbjct  180  EKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIGELQ  234

Query  238  AIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  297
            A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK IL
Sbjct  235  ALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  298  ENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshis  357
            ENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  358  llsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

31) SAAG_01239 in NC_022113


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 187/406 (47%), Positives = 292/406 (72%), Gaps = 10/406 (2%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDP T+KW+RVSVVLNKN KQSQKEA  RL+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +++++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y  Q+F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YM-QIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  ---KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  237
                +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIGE+ 
Sbjct  180  EKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIGELQ  234

Query  238  AIKNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  297
            A+++ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK IL
Sbjct  235  ALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  298  ENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshis  357
            ENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K +++H +RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  358  llsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

32) int3 in NC_017342


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 187/406 (47%), Positives = 292/406 (72%), Gaps = 10/406 (2%)

Query  9    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  68
            MW EKF NK+ ETKYRYYEKYKDP T+KW+RVSVVLNKN KQSQKEA  RL+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  69   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  128
            +++++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  129  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  188
            Y  Q+F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YM-QIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  189  ---KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  245
                +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIGE+ 
Sbjct  180  EKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIGELQ  234

Query  246  AIKNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  305
            A+++ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK IL
Sbjct  235  ALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  306  ENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshis  365
            ENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K +++H +RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  366  llsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  411
            LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

33) SLGD_02010 in NC_013893


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  262 bits (979),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 187/406 (47%), Positives = 291/406 (72%), Gaps = 10/406 (2%)

Query  1    MWHEKFTNKHGNIQYRFYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW EKF NK+ + +YR+YEKYKDP T+KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFHA  DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y  Q+F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YM-QIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  ---KAKRNKYLELNEIQSIIKDINMKAQKMHSCIHKRFYLFVALMTEFQALNGMRIGEML  237
                +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIGE+ 
Sbjct  180  EKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIGELQ  234

Query  238  AIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  297
            A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK IL
Sbjct  235  ALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  298  ENKKDSKWNDGYLNRNFIFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshis  357
            ENK   +WN +Y++R FIFT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  358  llsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

34) SARLGA251_07460 in NC_017349


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 186/406 (46%), Positives = 290/406 (72%), Gaps = 10/406 (2%)

Query  1    MWHDKFTNKHGDVQYRFYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW +KF NK+ + +YR+YEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFHA  DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQIFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y  QIF +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YM-QIFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  ---KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEML  237
                +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIGE+ 
Sbjct  180  EKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIGELQ  234

Query  238  AIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAIL  297
            A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK IL
Sbjct  235  ALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIIL  293

Query  298  ENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshis  357
            ENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+
Sbjct  294  ENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHIT  353

Query  358  llsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  354  LLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

35) SAAV_0787 in NC_013450


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 187/409 (46%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW EKF NK+ ETKYRYYEKYKDP T+KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +++++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDELDSKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177
            Y Q  ++ L     +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176

Query  178  DEV---KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234
            +++    +K  +YLE+N++   I+D  ++ +K+    HKR  +++A + E QAL GMRIG
Sbjct  177  EDIEKDESKMYNYLEMNQVLQ-IRDHILNDNKL----HKRNRILIASILEVQALTGMRIG  231

Query  235  EMLAIKNEVIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294
            E+ A+++  ID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKK  290

Query  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRKSAKDVGIEKEisshilrhs  354
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+K++K + ++K +++H +RH+
Sbjct  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350

Query  355  hisllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

36) SACOL0885 in NC_002951


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176

Query  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231

Query  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKK  290

Query  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhs  354
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350

Query  355  hisllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

37) M013TW_0806 in NC_016928


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176

Query  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231

Query  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKK  290

Query  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhs  354
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350

Query  355  hisllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

38) SA40_0754 in NC_022443


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176

Query  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231

Query  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKK  290

Query  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhs  354
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350

Query  355  hisllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

39) SA957_0769 in NC_022442


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (857),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 294/409 (72%), Gaps = 16/409 (3%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I  KLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKTPTTLKSLTFHVACDEWFQSYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K+++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDNKGYVY---QVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSY  177
            Y Q  ++ + +   +Y   QV ++ L+  K  + Y+ ++Y+  +  +L ++ + KR K+ 
Sbjct  121  YMQIFINKLSD---IYSQNQVTRQ-LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTI  176

Query  178  DEVK---AKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIG  234
            +++    +K  +YLE+N++  I  +I    +     +HKR  +++A + E QAL GMRIG
Sbjct  177  EDIEKDESKMYNYLEMNQVLQIRDHILNDNK-----LHKRNRILIASILEVQALTGMRIG  231

Query  235  EMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK  294
            E+ A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK
Sbjct  232  ELQALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKK  290

Query  295  AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhs  354
             ILENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+
Sbjct  291  IILENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHT  350

Query  355  hisllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            HI+LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  351  HITLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

40) int in NC_007793


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 189/407 (47%), Positives = 292/407 (72%), Gaps = 12/407 (2%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I EKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K ++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q +F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YMQ-IFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  K---AKRNKYLELNEIESIIKDINTKAQKMHSG-IHKRFYLFVALMTEFQALNGMRIGEM  236
                +K  +YLE+N++      ++ + + ++   +HKR  +++A + E QAL GMRIGE+
Sbjct  180  EKDESKMYNYLEMNQV------LQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGEL  233

Query  237  LAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAI  296
             A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK I
Sbjct  234  QALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKII  292

Query  297  LENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshi  356
            LENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI
Sbjct  293  LENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHI  352

Query  357  sllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  353  TLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

41) USA300HOU_0850 in NC_010079


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 189/407 (47%), Positives = 292/407 (72%), Gaps = 12/407 (2%)

Query  1    MWLEKFknknketkyryyekykDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLN  60
            MW+EKFKNKN+ETKYRYYEKYKDP T KW+RVSVVLNKN KQSQKEA   L+E+I EKLN
Sbjct  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN  60

Query  61   DKKPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            +K ++ LK+LTFH   DEW++  IKTSGSK TT++    ++  +K++  E++L+NK+   
Sbjct  61   NKSSSELKTLTFHALLDEWLEYHIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTK  120

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q +F +  S  Y  +     L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++
Sbjct  121  YMQ-IFINKLSDIYSQNQVTRQLGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDI  179

Query  181  K---AKRNKYLELNEIESIIKDINTKAQKMHSG-IHKRFYLFVALMTEFQALNGMRIGEM  236
                +K  +YLE+N++      ++ + + ++   +HKR  +++A + E QAL GMRIGE+
Sbjct  180  EKDESKMYNYLEMNQV------LQIRDHILNDNKLHKRNRILIASILEVQALTGMRIGEL  233

Query  237  LAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAI  296
             A+Q+ DID+ NK++NI GTIH++  E  GFG KDTTKT SS R+I+++SR+ EI+KK I
Sbjct  234  QALQEKDIDLLNKTINITGTIHRIKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKII  292

Query  297  LENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshi  356
            LENK   +WN +Y++R F+FT  KGNP+  +++  +L+ ++K + ++K V++H +RH+HI
Sbjct  293  LENKMLKRWNSSYVDRGFIFTTKKGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHI  352

Query  357  sllsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +LL +  VSLKAIM RVGH D++TT+ IY+HVTE+MD+++ +KLE++
Sbjct  353  TLLVEMNVSLKAIMKRVGHVDEKTTIRIYTHVTEKMDRELTQKLENI  399

42) int in NC_017341


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 172/384 (45%), Positives = 273/384 (72%), Gaps = 10/384 (2%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DP T+KW+RVSVVLNKN KQSQKEA   L+E+I  KLN+K+++ LK+LTFHA  DEW++ 
Sbjct  23   DPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWLEY  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
             IKTSGSK TT++    ++  +K++  E++L+NK+   Y Q +F +  S  Y  +     
Sbjct  83   HIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQ-IFINKLSDIYSQNQVTRQ  141

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVK---AKRNKYLELNEIQSIIKD  199
            L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++    +K  +YLE+N++  I +D
Sbjct  142  LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVLQI-RD  200

Query  200  INMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHW  259
              ++ +K+H    KR  +++A + E QAL GMRIGE+ A+Q+ DID+ NK++NI GTIH+
Sbjct  201  HILNDNKLH----KRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHR  256

Query  260  FHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNH  319
            +  E  GFG KDTTKT SS R+I+++SR+ EI+KK ILENK   +WN +Y++R F+FT  
Sbjct  257  IKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTK  315

Query  320  KGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHR  379
            KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+LL +  VSLKAIM RVGH D++
Sbjct  316  KGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEK  375

Query  380  TTLSIYSHVTEQMDKDMMNKLEQV  403
            TT+ IY+HVTE+MD+++ +KLE++
Sbjct  376  TTIRIYTHVTEKMDRELTQKLENI  399

43) rbsU in NC_017347


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 172/384 (45%), Positives = 273/384 (72%), Gaps = 10/384 (2%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DP T+KW+RVSVVLNKN KQSQKEA   L+E+I  KLN+K+++ LK+LTFHA  DEW++ 
Sbjct  23   DPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWLEY  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
             IKTSGSK TT++    ++  +K++  E++L+NK+   Y Q +F +  S  Y  +     
Sbjct  83   HIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQ-IFINKLSDIYSQNQVTRQ  141

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVK---AKRNKYLELNEIQSIIKD  199
            L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++    +K  +YLE+N++  I +D
Sbjct  142  LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVLQI-RD  200

Query  200  INMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHW  259
              ++ +K+H    KR  +++A + E QAL GMRIGE+ A+Q+ DID+ NK++NI GTIH+
Sbjct  201  HILNDNKLH----KRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHR  256

Query  260  FHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNH  319
            +  E  GFG KDTTKT SS R+I+++SR+ EI+KK ILENK   +WN +Y++R F+FT  
Sbjct  257  IKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTK  315

Query  320  KGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHR  379
            KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+LL +  VSLKAIM RVGH D++
Sbjct  316  KGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEK  375

Query  380  TTLSIYSHVTEQMDKDMMNKLEQV  403
            TT+ IY+HVTE+MD+++ +KLE++
Sbjct  376  TTIRIYTHVTEKMDRELTQKLENI  399

44) SATW20_08890 in NC_017331


> NC_007793_P4|58|G58|87160197|YP_494135.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|+|44822..46027|-|SAUSA300_1438|phiSLT 
ORF401-like protein, integrase
Length=401

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 172/384 (45%), Positives = 273/384 (72%), Gaps = 10/384 (2%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DP T+KW+RVSVVLNKN KQSQKEA   L+E+I  KLN+K+++ LK+LTFHA  DEW++ 
Sbjct  23   DPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWLEY  82

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
             IKTSGSK TT++    ++  +K++  E++L+NK+   Y Q +F +  S  Y  +     
Sbjct  83   HIKTSGSKLTTLNNIKIRIRNIKRYSSENLLLNKLDTKYMQ-IFINKLSDIYSQNQVTRQ  141

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVK---AKRNKYLELNEIQSIIKD  199
            L+  K  + Y+ ++Y+  +  +L ++ + KR K+ +++    +K  +YLE+N++  I +D
Sbjct  142  LGDMKGAIKYAVKFYNYPNEYLLTNVKIPKRRKTIEDIEKDESKMYNYLEMNQVLQI-RD  200

Query  200  INMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHW  259
              ++ +K+H    KR  +++A + E QAL GMRIGE+ A+Q+ DID+ NK++NI GTIH+
Sbjct  201  HILNDNKLH----KRNRILIASILEVQALTGMRIGELQALQEKDIDLLNKTINITGTIHR  256

Query  260  FHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNH  319
            +  E  GFG KDTTKT SS R+I+++SR+ EI+KK ILENK   +WN +Y++R F+FT  
Sbjct  257  IKYE-EGFGYKDTTKTISSKRSISINSRTVEIFKKIILENKMLKRWNSSYVDRGFIFTTK  315

Query  320  KGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHR  379
            KGNP+  +++  +L+ ++K + ++K V++H +RH+HI+LL +  VSLKAIM RVGH D++
Sbjct  316  KGNPLCNNQIAGVLKKTTKALNMNKKVTTHTFRHTHITLLVEMNVSLKAIMKRVGHVDEK  375

Query  380  TTLSIYSHVTEQMDKDMMNKLEQV  403
            TT+ IY+HVTE+MD+++ +KLE++
Sbjct  376  TTIRIYTHVTEKMDRELTQKLENI  399