Hit (GenBank Accn) |
Product |
Source Genome |
Eval. |
Ident.(%) |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_017022 (Enterococcus faecium Aus0004) |
2e-63 |
100 |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_021994 (Enterococcus faecium AUS0085) |
2e-63 |
100 |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_021035 (butyrate-producing bacterium SS3/4) |
5e-42 |
70 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
NC_021020 (Faecalibacterium prausnitzii SL3/3) |
2e-40 |
66 |
|
hypothetical protein |
NC_003210 (Listeria monocytogenes EGD-e) |
2e-20 |
41 |
|
hypothetical protein |
NC_013316 (Clostridium difficile R20291) |
1e-15 |
42 |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_021047 (Clostridium saccharolyticum K10) |
1e-15 |
42 |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_021043 (Eubacterium siraeum V10Sc8a) |
1e-15 |
42 |
|
DNA-directed RNA polymerase specialized sigma subunit |
NC_021013 (Ruminococcus bromii L2-63) |
1e-15 |
42 |
|
extrachromosomal origin protein |
NC_009089 (Clostridium difficile 630) |
1e-12 |
42 |
SELECT distinct ph.genome_accn, ph.id_genome_orf, ph.position_begin_pai, ph.position_end_pai, ph.position_begin_genome, ph.position_end_genome, ph.identity, ph.qcoverage, ph.tcoverage,
ph.evalue, ph.score, ph.multi_hsp, ph.multi_strand, ph.source_class, hsp, go.name, go.name_alt, go.pid
FROM pai_homolog as ph, genome_orf as go
WHERE ph.pai_accn='NC_021994_R1' AND ph.id_pai_orf='57' AND match_level='P'
AND go.genome_accn=ph.genome_accn AND ph.id_genome_orf=go.id_genome_orf
ORDER BY ph.score desc, ph.evalue asc, ph.identity desc