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PAthogenisity Island DataBase (PAI DB)

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Homologs of api52 gene of AJ627388

178

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Ser39006_0954
( YP_008521336.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_022268
(Serratia sp. ATCC 39006)

0.0

2) hsdR
( YP_005801360.1 )

type I restriction-modification system endonuclease

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

3) EpC_05850
( YP_002647617.1 )

type I restriction-modification system restriction subunit

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

4) EcE24377A_0289
( YP_001461443.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

5) EJP617_05160
( YP_005817084.1 )

Type I restriction-modification system restriction subunit

NC_017445
(Erwinia sp. Ejp617)

0.0

6) H650_18270
( YP_008109408.1 )

DEAD/DEAH box helicase

NC_021500
(Enterobacter sp. R4-368)

0.0

7) CFSAN002050_05875
( YP_008259121.1 )

DEAD/DEAH box helicase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

8) PCC21_032460
( YP_006647902.1 )

type I restriction-modification system subunit R

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

9) CSSP291_03040
( YP_007439495.1 )

hypothetical protein

NC_020260
(Cronobacter sakazakii Sp291)

0.0

10) ESA_00617
( YP_001436737.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

0.0

11) Nwat_1306
( YP_003760553.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014315
(Nitrosococcus watsonii C-113)

0.0

12) Maqu_3386
( YP_960644.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008740
(Marinobacter aquaeolei VT8)

0.0

13) hsdR
( YP_007595121.1 )

type I restriction-modification system, restriction subunit R

NC_020547
(Acinetobacter baumannii D1279779)

0.0

14) Noc_1804
( YP_343804.1 )

type I topoisomerase

NC_007484
(Nitrosococcus oceani ATCC 19707)

0.0

15) MARHY0349
( YP_005428274.1 )

type I restriction enzyme HindVIIP R protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

0.0

16) CYCME_0985
( YP_008373677.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021917
(Cycloclasticus zancles 7-ME)

0.0

17) MM_0431
( NP_632455.1 )

type I restriction-modification system restriction subunit

NC_003901
(Methanosarcina mazei Go1)

0.0

18) Psest_4044
( YP_007242144.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019936
(Pseudomonas stutzeri RCH2)

0.0

19) hsdR
( NP_840469.1 )

restriction enzyme type I helicase subunits and related helicases

NC_004757
(Nitrosomonas europaea ATCC 19718)

0.0

20) hsdR
( NP_246480.1 )

hypothetical protein

NC_002663
(Pasteurella multocida Pm70)

0.0

21) NT08PM_1867
( YP_006240732.1 )

putative type I restriction enzyme MjaXP R protein

NC_017764
(Pasteurella multocida 3480)

0.0

22) Tola_1223
( YP_002892426.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012691
(Tolumonas auensis DSM 9187)

0.0

23) Shewana3_4244
( YP_863759.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008573
(Shewanella sp. ANA-3)

0.0

24) Sbal223_4470
( YP_002364291.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_011668
(Shewanella baltica OS223)

0.0

25) Rfer_0028
( YP_521321.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

26) BN4_12249
( YP_007494635.1 )

putative type I restriction enzyme HindVIIP R protein

NC_020409
(Desulfovibrio piezophilus C1TLV30)

0.0

27) Desal_2732
( YP_002992325.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012881
(Desulfovibrio salexigens DSM 2638)

0.0

28) A458_03965
( YP_006456468.1 )

type I restriction-modification enzyme, R subunit

NC_018028
(Pseudomonas stutzeri CCUG 29243)

0.0

29) CAP2UW1_1871
( YP_003167098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

0.0

30) R2APBS1_3887
( YP_007592173.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_020541
(Rhodanobacter sp. 2APBS1)

0.0

31) Metme_1967
( YP_004512879.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015572
(Methylomonas methanica MC09)

0.0

32) Mpe_A0011
( YP_001019208.1 )

type I site-specific deoxyribonuclease

NC_008825
(Methylibium petroleiphilum PM1)

0.0

33) hsdR2
( YP_003623498.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

34) hsdR1
( YP_003623201.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

35) hsdR3
( YP_003626028.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

36) Ppro_1854
( YP_901524.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008609
(Pelobacter propionicus DSM 2379)

0.0

37) hsdR
( YP_005446850.1 )

type I restriction-modification system restriction subunit

NC_017080
(Phycisphaera mikurensis NBRC 102666)

0.0

38) STH1908
( YP_075737.1 )

type I restriction-modification system endonuclease

NC_006177
(Symbiobacterium thermophilum IAM 14863)

0.0

39) Bpro_1944
( YP_548773.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007948
(Polaromonas sp. JS666)

0.0

40) Pnap_4782
( YP_973933.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008761
(Polaromonas naphthalenivorans CJ2)

0.0

41) Acav_4671
( YP_004237117.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015138
(Acidovorax avenae ATCC 19860)

0.0

42) Sputcn32_2912
( YP_001184428.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009438
(Shewanella putrefaciens CN-32)

0.0

43) PSPTO_1089
( NP_790923.1 )

type I restriction-modification enzyme, R subunit

NC_004578
(Pseudomonas syringae DC3000)

0.0

44) PSTAB_3393
( YP_004715763.1 )

type I restriction-modification enzyme, R subunit

NC_015740
(Pseudomonas stutzeri ATCC 17588)

0.0

45) PT7_2213
( YP_004417377.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015458
(Pusillimonas sp. T7-7)

0.0

46) KN400_0449
( YP_006889493.1 )

type I restriction endonuclease, HsdR family

NC_017454
(Geobacter sulfurreducens KN400)

0.0

47) Acid345_3755
( YP_592829.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008009
(Candidatus Koribacter versatilis Ellin345)

0.0

48) Cyan7822_0695
( YP_003886002.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014501
(Cyanothece sp. PCC 7822)

0.0

49) K756_04780
( YP_008123717.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021521
(Haemophilus parasuis ZJ0906)

0.0

50) Caur_1816
( YP_001635422.1 )

HsdR family type I site-specific deoxyribonuclease

NC_010175
(Chloroflexus aurantiacus J-10-fl)

0.0

51) Chy400_1964
( YP_002569695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012032
(Chloroflexus sp. Y-400-fl)

0.0

52) hsdR
( YP_002474982.1 )

Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

NC_011852
(Haemophilus parasuis SH0165)

0.0

53) Clocl_3622
( YP_005048015.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

54) Thein_1571
( YP_004626395.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015681
(Thermodesulfatator indicus DSM 15286)

0.0

55) ASU2_03875
( YP_006817152.1 )

putative type I site-specific restriction-modification system, restriction subunit

NC_018690
(Actinobacillus suis H91-0380)

0.0

56) hsdR3
( YP_001053343.1 )

type I site-specific restriction-modification system, restriction subunit

NC_009053
(Actinobacillus pleuropneumoniae L20)

0.0

57) Calni_0580
( YP_004050655.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

0.0

58) LFE_0359
( YP_005468211.1 )

type I sitespecific deoxyribonuclease, HsdR family

NC_017094
(Leptospirillum ferrooxidans C2-3)

0.0

59) VFMJ11_B0055
( YP_002157417.1 )

type I site-specific deoxyribonuclease

NC_011185
(Vibrio fischeri MJ11)

0.0

60) Cylst_5220
( YP_007149934.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019757
(Cylindrospermum stagnale PCC 7417)

0.0

61) DCF50_p1408
( YP_006913399.1 )

Type I restriction-modification system, restriction subunit R

NC_018867
(Dehalobacter sp. CF)

0.0

62) Desdi_0311
( YP_007219255.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

0.0

63) CGSHiEE_04165
( YP_001290621.1 )

putative type I restriction enzyme HindVIIP R protein

NC_009566
(Haemophilus influenzae PittEE)

0.0

64) hsdR
( YP_005829269.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017452
(Haemophilus influenzae R2846)

0.0

65) hsdR3
( YP_004135181.1 )

type i restriction enzyme hindviip r protein

NC_014920
(Haemophilus influenzae F3031)

0.0

66) PARA_15870
( YP_004823273.1 )

hypothetical protein

NC_015964
(Haemophilus parainfluenzae T3T1)

0.0

67) MmarC7_0017
( YP_001329240.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009637
(Methanococcus maripaludis C7)

0.0

68) NIS_1703
( YP_001357166.1 )

type I restriction-modification system, R subunit

NC_009662
(Nitratiruptor sp. SB155-2)

0.0

69) Rhom172_1461
( YP_004825222.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

0.0

70) MmarC6_0040
( YP_001548098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009975
(Methanococcus maripaludis C6)

0.0

71) Mrub_2450
( YP_003508221.1 )

type I site-specific deoxyribonuclease HsdR family

NC_013946
(Meiothermus ruber DSM 1279)

0.0

72) K649_10280
( YP_007880845.1 )

type I site-specific deoxyribonuclease HsdR family protein

NC_021081
(Meiothermus ruber DSM 1279)

0.0

73) F7308_0305
( YP_004646833.1 )

type I restriction-modification system, R subunit

NC_015696
(Francisella sp. TX077308)

0.0

74) RoseRS_0281
( YP_001274663.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009523
(Roseiflexus sp. RS-1)

0.0

75) GYY_04440
( YP_004742506.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015847
(Methanococcus maripaludis X1)

0.0

76) UMN179_00648
( YP_004419579.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015460
(Gallibacterium anatis UMN179)

0.0

77) hsdR
( YP_001681587.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_010337
(Heliobacterium modesticaldum Ice1)

0.0

78) Turpa_2677
( YP_006440822.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_018020
(Turneriella parva DSM 21527)

0.0

79) TSC_c12320
( YP_004202401.1 )

type I site-specific deoxyribonuclease HsdR

NC_014974
(Thermus scotoductus SA-01)

0.0

80) Nhal_0892
( YP_003526454.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_013960
(Nitrosococcus halophilus Nc 4)

0.0

81) SAEMRSA15_00470
( YP_006236424.1 )

type I restriction-modification system endonuclease

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

82) hsdR3
( YP_249269.1 )

type I restriction enzyme HindVIIP R protein

NC_007146
(Haemophilus influenzae 86-028NP)

0.0

83) hsdR
( YP_002759690.1 )

type I restriction-modification system restriction subunit

NC_012489
(Gemmatimonas aurantiaca T-27)

0.0

84) hsdR
( YP_008105285.1 )

type I restriction-modification system restriction subunit

NC_021499
(Pseudomonas resinovorans NBRC 106553)

0.0

85) hsdR
( YP_005754071.1 )

type I restriction-modification system endonuclease

NC_017349
(Staphylococcus aureus LGA251)

0.0

86) Amico_0451
( YP_003553316.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014011
(Aminobacterium colombiense DSM 12261)

0.0

87) SAA6159_00056
( YP_005738228.1 )

type I site-specific deoxyribonuclease restriction subunit

NC_017338
(Staphylococcus aureus JKD6159)

0.0

88) SCE1572_29155
( YP_008152220.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

0.0

89) WQG_11930
( YP_007548261.1 )

type I restriction enzyme HindVIIP R protein

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

0.0

90) PP1Y_AT2851
( YP_004533071.1 )

putative type I restriction-modification system HsdR

NC_015580
(Novosphingobium sp. PP1Y)

0.0

91) Spica_2695
( YP_004699300.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015732
(Treponema caldaria DSM 7334)

0.0

92) Dacet_2560
( YP_003505275.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

0.0

93) hsdR
( YP_251977.1 )

type I restriction-modification system restriction subunit

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

94) Desgi_1004
( YP_007944218.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

0.0

95) MHH_c24310
( YP_007884225.1 )

type I restriction enzyme, R subunit

NC_021082
(Mannheimia haemolytica M42548)

0.0

96) M013TW_0061
( YP_005296531.1 )

Type I restriction-modification system,restriction subunit R

NC_016928
(Staphylococcus aureus M013)

0.0

97) hsdR
( YP_008584154.1 )

type I restriction-modification system endonuclease

NC_022442
(Staphylococcus aureus SA957)

0.0

98) F382_03180
( YP_008233518.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021743
(Mannheimia haemolytica D153)

0.0

99) J451_03490
( YP_008222094.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021739
(Mannheimia haemolytica D174)

0.0

100) D650_9850
( YP_007665762.1 )

type I restriction enzyme HindVIIP R protein

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

0.0

101) D648_15990
( YP_007669111.1 )

type I restriction enzyme HindVIIP R protein

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

0.0

102) N220_08970
( YP_008339235.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021883
(Mannheimia haemolytica USMARC_2286)

0.0

103) G432_08520
( YP_007616025.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020561
(Sphingomonas sp. MM-1)

0.0

104) J450_02390
( YP_008219540.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021738
(Mannheimia haemolytica D171)

0.0

105) Metho_1322
( YP_007313073.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019977
(Methanomethylovorans hollandica DSM 15978)

0.0

106) CJA_3632
( YP_001984085.1 )

HsdR protein

NC_010995
(Cellvibrio japonicus Ueda107)

0.0

107) hsdR
( YP_771133.1 )

putative type I restriction-modification system HsdR

NC_008384
(Rhizobium leguminosarum 3841)

0.0

108) Veis_3131
( YP_997880.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

109) hsdR
( NP_439437.1 )

type I restriction enzyme

NC_000907
(Haemophilus influenzae Rd KW20)

0.0

110) hsdR
( YP_005827547.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017451
(Haemophilus influenzae R2866)

0.0

111) Galf_1221
( YP_003847013.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014394
(Gallionella capsiferriformans ES-2)

0.0

112) MM_2204
( NP_634228.1 )

hypothetical protein

NC_003901
(Methanosarcina mazei Go1)

0.0

113) Mbur_1213
( YP_565885.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007955
(Methanococcoides burtonii DSM 6242)

0.0

114) Xfasm12_2283
( YP_001776760.1 )

Type I site-specific deoxyribonuclease

NC_010513
(Xylella fastidiosa M12)

0.0

115) Neut_0537
( YP_746777.1 )

type I site-specific deoxyribonuclease, HsdR family protein

NC_008344
(Nitrosomonas eutropha C91)

0.0

116) HIB_14360
( YP_005179461.1 )

putative type I restriction enzyme HindVIIP R protein

NC_016809
(Haemophilus influenzae 10810)

0.0

117) HICON_18090
( YP_004138718.1 )

type I restriction enzyme HindVIIP R protein

NC_014922
(Haemophilus influenzae F3047)

0.0

118) MROS_1287
( YP_006527537.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018178
(Melioribacter roseus P3M-2)

0.0

119) Rfer_4010
( YP_525239.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

120) Syn6312_0882
( YP_007060633.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019680
(Synechococcus sp. PCC 6312)

0.0

121) SYN_00497
( YP_462086.1 )

type I restriction-modification system restriction subunit

NC_007759
(Syntrophus aciditrophicus SB)

0.0

122) Mmol_0222
( YP_003047659.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012968
(Methylotenera mobilis JLW8)

0.0

123) Dgeo_2012
( YP_605475.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008025
(Deinococcus geothermalis DSM 11300)

0.0

124) XF2739
( NP_300016.2 )

type I restriction-modification system endonuclease

NC_002488
(Xylella fastidiosa 9a5c)

0.0

125) Clocl_1698
( YP_005046236.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

126) PGA2_c07320
( YP_006561993.1 )

type I restriction-modification system, R subunit

NC_018286
(Phaeobacter gallaeciensis 2.10)

0.0

127) XOO_3254
( YP_452283.1 )

type I restriction-modification system endonuclease

NC_007705
(Xanthomonas oryzae MAFF 311018)

0.0

128) hsdR1
( YP_001620584.1 )

type I site-specific restriction-modification system, R (restriction) subunit

NC_010163
(Acholeplasma laidlawii PG-8A)

0.0

129) Veis_3013
( YP_997764.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

130) Ngar_c29150
( YP_006863491.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018719
(Candidatus Nitrososphaera gargensis enrichment culture Ga9.2)

0.0

131) hsdR
( YP_004570379.1 )

type I site-specific deoxyribonuclease

NC_015634
(Bacillus coagulans 2-6)

0.0

132) hsdR
( YP_002952899.1 )

type I restriction enzyme R protein

NC_012796
(Desulfovibrio magneticus RS-1)

0.0

133) Dtpsy_1863
( YP_002553320.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_011992
(Acidovorax ebreus TPSY)

0.0

134) TREAZ_2426
( YP_004528992.1 )

putative type-1 restriction enzyme MjaXP R protein

NC_015577
(Treponema azotonutricium ZAS-9)

0.0

135) Zmob_1744
( YP_005527847.1 )

HsdR family type I site-specific deoxyribonuclease

NC_017180
(Zymomonas mobilis ATCC 10988)

0.0

136) AFE_2790
( YP_002427160.1 )

type I restriction-modification enzyme, R subunit

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

0.0

137) Lferr_2413
( YP_002220816.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

0.0

138) MmTuc01_2253
( YP_007490847.1 )

Type I restriction-modification system, restriction subunit R

NC_020389
(Methanosarcina mazei Tuc01)

0.0

139) hsdR1
( YP_005268567.1 )

type I restriction-modification system restriction subunit HsdR1

NC_016894
(Acetobacterium woodii DSM 1030)

0.0

140) Mhun_2781
( YP_504195.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007796
(Methanospirillum hungatei JF-1)

0.0

141) Cag_1124
( YP_379429.1 )

Type I site-specific deoxyribonuclease HsdR

NC_007514
(Chlorobium chlorochromatii CaD3)

0.0

142) Arth_0986
( YP_830483.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008541
(Arthrobacter sp. FB24)

0.0

143) Cyan7425_3142
( YP_002483831.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011884
(Cyanothece sp. PCC 7425)

0.0

144) hsdR
( YP_001854379.1 )

type I restriction enzyme R protein

NC_010617
(Kocuria rhizophila DC2201)

0.0

145) Anacy_6058
( YP_007160104.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019773
(Anabaena cylindrica PCC 7122)

0.0

146) APECO78_16850
( YP_007382535.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020163
(Escherichia coli APEC O78)

0.0

147) EcE24377A_2911
( YP_001463946.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

148) Jden_2251
( YP_003162189.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013174
(Jonesia denitrificans DSM 20603)

0.0

149) XOO3452
( YP_202091.6 )

type I restriction-modification system endonuclease

NC_006834
(Xanthomonas oryzae KACC10331)

0.0

150) hsdR
( YP_004649007.1 )

type I site-specific deoxyribonuclease

NC_015697
(Lactobacillus reuteri SD2112)

0.0

151) LRI_1098
( YP_008099452.1 )

HsdR family type I site-specific deoxyribonuclease

NC_021494
(Lactobacillus reuteri I5007)

0.0

152) CJJ81176_1534
( YP_001001189.1 )

type I restriction-modification enzyme, R subunit

NC_008787
(Campylobacter jejuni 81-176)

0.0

153) hsdR
( YP_005656818.1 )

putative type I restriction enzyme R protein

NC_017279
(Campylobacter jejuni IA3902)

0.0

154) hsdR
( YP_002344921.1 )

type I restriction enzyme R protein

NC_002163
(Campylobacter jejuni NCTC 11168)

0.0

155) hsdR
( YP_006633669.1 )

type I restriction enzyme R protein

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

0.0

156) A911_07460
( YP_006858536.1 )

putative type I restriction enzyme R protein

NC_018709
(Campylobacter jejuni PT14)

0.0

157) hsdR3
( YP_008562898.1 )

type I restriction enzyme, R subunit

NC_022362
(jejuni jejuni 00-2425)

0.0

158) hsdR3
( YP_008541144.1 )

type I restriction enzyme, R subunit

NC_022352
(jejuni jejuni 00-2426)

0.0

159) hsdR3
( YP_008539461.1 )

type I restriction enzyme, R subunit

NC_022351
(jejuni jejuni 00-2538)

0.0

160) hsdR3
( YP_008542866.1 )

type I restriction enzyme, R subunit

NC_022353
(jejuni jejuni 00-2544)

0.0

161) Lreu_0874
( YP_001271474.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009513
(Lactobacillus reuteri DSM 20016)

0.0

162) LAR_0819
( YP_001841815.1 )

type I restriction-modification system restriction subnit

NC_010609
(Lactobacillus reuteri JCM 1112)

0.0

163) Plabr_4424
( YP_004272018.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015174
(Planctomyces brasiliensis DSM 5305)

0.0

164) Calow_2045
( YP_004003356.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_014657
(Caldicellulosiruptor owensensis OL)

0.0

165) Tmath_1861
( YP_003677563.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_014209
(Thermoanaerobacter mathranii A3)

0.0

166) alr4604
( NP_488644.1 )

type I site-specific deoxyribonuclease chain R

NC_003272
(Nostoc sp. PCC 7120)

0.0

167) Mzhil_1435
( YP_004616498.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015676
(Methanosalsum zhilinae DSM 4017)

0.0

168) GLX_22380
( YP_004869020.1 )

type I/III endonuclease restriction R subunit

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

0.0

169) Desaf_3450
( YP_005053395.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016629
(Desulfovibrio africanus Walvis Bay)

0.0

170) SABB_01782
( YP_008167216.1 )

Type I restriction enzyme HindVIIP R-like protein

NC_021670
(Staphylococcus aureus Bmb9393)

1e-175

171) SAMSHR1132_00490
( YP_005324572.1 )

type I restriction-modification system endonuclease (fragment)

NC_016941
(Staphylococcus aureus MSHR1132)

2e-174

172) GWCH70_1642
( YP_002949695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012793
(Geobacillus sp. WCH70)

5e-174

173) HMPREF0389_01038
( YP_005055168.1 )

50S ribosomal protein L7/L12

NC_016630
(Filifactor alocis ATCC 35896)

6e-173

174) Ethha_0476
( YP_004090792.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014828
(Ethanoligenens harbinense YUAN-3)

7e-172

175) Mpet_1680
( YP_003894871.1 )

type I site-specific deoxyribonuclease

NC_014507
(Methanoplanus petrolearius DSM 11571)

2e-170

176) SAT0131_02861
( YP_005753900.1 )

Type I restriction-modification system endonuclease -like proteinue

NC_017347
(Staphylococcus aureus T0131)

8e-169

177) Desru_3588
( YP_004547076.1 )

type I site-specific deoxyribonuclease HsdR family

NC_015589
(Desulfotomaculum ruminis DSM 2154)

3e-167

178) M493_07025
( REF_PRJNA208285:M493 )

hypothetical protein

NC_022080
(Geobacillus sp. JF8)

4e-114

• Sequence Alignments

1) Ser39006_0954 in NC_022268


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1578 bits (5993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 954/1044 (92%), Positives = 1019/1044 (98%), Gaps = 1/1044 (0%)

Query  1     MLSEDDLEQMSLGWFAGQGWEILHGPDIAPDSDNPLRISFHDVFLRPVLREQLAKLNPHL  60
             MLSEDDLEQ+SLGWFAGQGWE+LHGPDIAPD+ NPLRISFHDVFLRP++R QL  LNPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PASVLDEVLARITRAESPDIVVSNKAFHHLLLAGVPVEYKRDDKVIHDTALLMDFNHPGN  120
             PAS++DE+++RITR+ESPDIVVSNKAFHHLLL+GVPVEYKRDDKVIHDTALLMDFNHP N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NHFTVVNQVAISGTKQLRRPDVICYINGLPVAVIELKSPIDANADIWTAFNQLQTYKNEI  180
             N+FTVVNQVAISGTKQLRRPDVICYINGLP+AVIELKSP D NADIW+AFNQLQTYKNEI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVISDGYNARIGSLTADEERYLPWKTISNEDDKPLLEWQLETVVKGFFNRE  240
             SDLFICNEALVISDGYNARIGSLTADEER+LPWKTISNEDDKPLLE QLE VV+GFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFILFENDGKHLIKKIAAYHQFHAVREAVSATIVASTGKFLPLRCDIKPGSKK  300
             LLLDYIRYFILFE+DGK+LIKKIAAYHQFHAVREAV+ATIVASTGKFLPLR +IKPGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQEEMNNPTIVVVTDRNDLDGQLYATFCQAKDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQ EMNNPTIVVVTDRNDLDGQLY+TFCQAKDLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   EPQQASDRDQLREMLAARESGGIIFTTVQKFAPLDGEKVHPALSVRDNIVVISDEAHRSQ  420
             EPQQAS+RDQLREMLAARESGGIIFTTVQKFAPLDGE+ HPAL++RDNIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVEDGATVQIFYESRLAKLDLNHAELEELSNQVDELVedeetdqkektkGDWSRLEKLV  540
             DAV+DGATV I+YESRLAKLDLNH ELE LS+QVD+LVEDEETDQKEKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSEPRIHQVAADLVKHFEARNATMDGKAMVVAMSRDICVRLYNALVALRPEWHSEDVEKG  600
             GSEPRI QVAADLVKHF ARNATM+GKAM+VAMSRDICVRLYNALVALRPEWHSEDVEKG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   SLKVIMTGSASDKEHLQSHIYNKQTKKRLETRFKDLDDPLKIVIVRDMWLTGFDAPCCHT  660
              +K+IMTGSASDKEHLQ+HIYNKQTKKRLE+RFKDL+DPLKIVIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFKDKPSGLVVDYIGIANELKDALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVFKDKP+GLVVDYIGIANELK+ALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   TKEAFSVLLEKLDIIHGMFAKTATDPGFDYSAFEHNPQRVLLDAANYILGLDDGKKRYFD  780
             +++AF+VLLEKLD+IHGMFAKT+TDPGFDYSAFE+NPQ+VLLDAANYILGLDDGKKRYFD
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VVLALNKSWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  840
             VVLALNK+WSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  841   AIIATGVDDVFALAGLDKPNIGLLSDEFLQEVHDMPQRNLAVELLQKLLNDGIHARANNN  900
             AI+ATGVDDVFALAGLDKPNIGLLSDEFL+EV++MPQRNLAVELL+KLLNDGIHAR+NNN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  901   VVQEKKYSDRLRTVLLKYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  960
             VVQEKKYSDRLR+VLL+YNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  961   ALAENESAVRELGDDILKKLAIEVTLKLRQSTTVDWQVRESVRARLRILVRQTLRKYKYP  1020
             ALAENESAVRELGD+ LKKLAIEVT +LR+STTVDWQVRESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1021  PDKTAGAVELILKQAEVVSNSWTV  1044
             PDK+ +AVELILKQAEVVSNSWT 
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

2) hsdR in NC_017390


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1552 bits (5893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 927/1043 (89%), Positives = 1001/1043 (96%), Gaps = 1/1043 (0%)

Query  1     MLSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHL  60
             MLSEDDLEQLSLGWFAGQGWEVL GPDIAPDG NPLR SF+DVFLRP++R+QL  +NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PDSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVAYKRDDQIIHDTALLMDFNRPDH  120
             P S++DE++SR+TRPESPDIV SNKAFHHLLL+GVPV YKRDD++IHDTALLMDFN+P++
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             NRF+VVNQVAI GTKQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             SDLFICNE LVISDGYNARIGSLTADEER+LPWKT+SNEDDKP+ E QLE V+NGFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYLRYFILFEHDGQRTMKKIAACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSKK  300
             LLLDY+RYFILFE DG+R +KKIAA HQFHAVREAV+ATIVA+TG++L LRS+IKPGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQAKDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQA MNNPTIVVVTDRNDLDGQLY+TFCQAKDLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   EPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420
             EPQQAS+R+QLR MLAAR SGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYVSIYDIQ  480
             YGL+ATLD++ GAYKYGYAKHMRDALPNA+FMGFTGTPVS+EDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNH+ELEALSSQV++LVEDEE++QKEKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHSEEVDKG  600
             GS PRI QVAADLVKHF ARNATMNGKAMIVAMSRDICVRLY+ALV LRP+WHSE+V+KG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  660
              IKIIMTGSASDK  LQPHIYNK TKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGKGQTTID  720
             MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD+KGKGQTTID
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADNPQRVLLDAANYILGLDEGKKRYFD  780
             AR+AFA+LLEKLD+IHGMFAKT TD+GFDYSAF +NPQ+VLLDAANYILGLD+GKKRYFD
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKLTTTDQKFSQSEKHSLLSRILDN  840
             VVLALNKA SLCSTLDE KPLQKELAFLSAVKVA+IKLTTTD+KFSQSEK+SLLSRILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  841   AIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELLQKLLNDGIHARTNNN  900
             AIVATGVDDVFALAGLDKPNIGLLSDEFL+EV++MPQRNLAVELL+KLLNDGIHARTNNN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  901   VVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMARDDALGLNPDEIAFYD  960
             VVQEKKYS+RL+AVLLRY+NRAIETAQVIEELIQMAK+FQAAMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  961   ALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRARLRILVRQTLRKYKYP  1020
             ALAENESAVRELGDE LKKLA+EVT +LR+STTVDWQ RESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1021  PDKTPYAVELILKQAEVMSNSWT  1043
             PDK+  AVELILKQAEV+SNSWT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

3) EpC_05850 in NC_012214


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1552 bits (5893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 927/1043 (89%), Positives = 1001/1043 (96%), Gaps = 1/1043 (0%)

Query  1     MLSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHL  60
             MLSEDDLEQLSLGWFAGQGWEVL GPDIAPDG NPLR SF+DVFLRP++R+QL  +NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PDSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVAYKRDDQIIHDTALLMDFNRPDH  120
             P S++DE++SR+TRPESPDIV SNKAFHHLLL+GVPV YKRDD++IHDTALLMDFN+P++
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             NRF+VVNQVAI GTKQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             SDLFICNE LVISDGYNARIGSLTADEER+LPWKT+SNEDDKP+ E QLE V+NGFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYLRYFILFEHDGQRTMKKIAACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSKK  300
             LLLDY+RYFILFE DG+R +KKIAA HQFHAVREAV+ATIVA+TG++L LRS+IKPGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQAKDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQA MNNPTIVVVTDRNDLDGQLY+TFCQAKDLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   EPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420
             EPQQAS+R+QLR MLAAR SGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYVSIYDIQ  480
             YGL+ATLD++ GAYKYGYAKHMRDALPNA+FMGFTGTPVS+EDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNH+ELEALSSQV++LVEDEE++QKEKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHSEEVDKG  600
             GS PRI QVAADLVKHF ARNATMNGKAMIVAMSRDICVRLY+ALV LRP+WHSE+V+KG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  660
              IKIIMTGSASDK  LQPHIYNK TKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGKGQTTID  720
             MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD+KGKGQTTID
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADNPQRVLLDAANYILGLDEGKKRYFD  780
             AR+AFA+LLEKLD+IHGMFAKT TD+GFDYSAF +NPQ+VLLDAANYILGLD+GKKRYFD
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKLTTTDQKFSQSEKHSLLSRILDN  840
             VVLALNKA SLCSTLDE KPLQKELAFLSAVKVA+IKLTTTD+KFSQSEK+SLLSRILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  841   AIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELLQKLLNDGIHARTNNN  900
             AIVATGVDDVFALAGLDKPNIGLLSDEFL+EV++MPQRNLAVELL+KLLNDGIHARTNNN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  901   VVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMARDDALGLNPDEIAFYD  960
             VVQEKKYS+RL+AVLLRY+NRAIETAQVIEELIQMAK+FQAAMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  961   ALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRARLRILVRQTLRKYKYP  1020
             ALAENESAVRELGDE LKKLA+EVT +LR+STTVDWQ RESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1021  PDKTPYAVELILKQAEVMSNSWT  1043
             PDK+  AVELILKQAEV+SNSWT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

4) EcE24377A_0289 in NC_009801


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1528 bits (5801),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 925/1044 (89%), Positives = 1002/1044 (96%), Gaps = 1/1044 (0%)

Query  1     MLSEDDLEQQSLQWFAELGWEVLHGPDIAPDGNNPLRASFHDVFLRPVLLEQLQKINPHL  60
             MLSEDDLEQ SL WFA  GWEVLHGPDIAPDG+NPLR SFHDVFLRP++  QL+ +NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVAVLDEVILRIAHAQSPDLVVSNKAFHHLLLDGVPVQYKQDDKVIHDKALLMDFNHPNN  120
             P +++DE+I RI++++SPD+VVSNKAFHHLLL GVPV+YK+DDKVIHD ALLMDFNHP+N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NHFTVVNQVAIQGTKQVRRPDVICYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N+FTVVNQVAI GTKQ+RRPDVICYINGLP+ VIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVVSDGYNARIGSLTANEERFLPWKTLSNEDDKPLFEWQLETVVKGFFNRE  240
             SDLFICNEALV+SDGYNARIGSLTA+EERFLPWKT+SNEDDKPL+E QLE VV+GFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVTATIVASTGKHLPLRSNITPGSKK  300
             LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPLRSNI PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   EPLQANDRDQLREMLNVRESGGIIFTTVQKFAPLDGEQTHPALNLRSNIVVISDEAHRSQ  420
             EP QA++RDQLREML  RESGGIIFTTVQKFAPLDGEQ+HPALNLR NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLNRETGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  480
             YGLSATL+++ GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVEDGATVPIYYESRLAKLDLNHEELETLSNQVDELVedeetdqkektkSDWSRLEKLV  540
             DAV+DGATVPIYYESRLAKLDLNHEELE+LS+QVD+LVEDEETDQKEKTK+DWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSEPRINEVAADLVQHFEARNATMNGKAMIVAMSREICVKLYDALVALRPEWHSDDVEKG  600
             GSEPRI++VAADLV+HF ARNATMNGKAMIVAMSR+ICV+LY+ALVALRPEWHS+DVEKG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   EIKIIMTGSASDNKFLQPHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFDAPCCHT  660
             EIKIIMTGSASD+  LQPHIYNKQTKKRLEARFKDLNDPLK+VIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AHEAFSILLEKLDVIHGMFAKTPTAAGFDYTGFAEVPQRFLLKAADYVLGLDDGKKRFFD  780
             A++AF++LLEKLDVIHGMFAKT T +GFDY++F + PQ+ LL AA+Y+LGLDDGKKR+FD
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VVLAMNKAWSLCSTLDEAKPLQKEIAFLSAVKVAIIKLTTTDKKFSQSEKNTLLGKILDN  840
             VVLA+NKAWSLCSTLDEAKPLQKE+AFLSAVKVAIIKLTTTDKKFSQSEKN+LL++ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  841   AIIATGVDDVFALAGLDKPNIGLLSDEFLEEVRELPQRNLAVELLEKLLNDGIHARTKNN  900
             AI+ATGVDDVFALAGLDKPNIGLLSDEFLEEVRE+PQRNLAVELLEKLLNDGIHART+NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  901   VVQEKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKEFQEAMARDEALGLNPDEIAFYD  960
             VVQEKKYSDRL+AVLL+YNNRAIETAQVIEELIQMAKEFQ AMARD+ALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  961   ALAENESAVRELGDDVLKKLAIEVTLKLRQSTTVDWQVRESVRARLRILVRQTLRKYKYP  1020
             ALAENESAVRELGD+ LKKLAIEVT +LR+STTVDWQVRESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1021  PDKTPYAVELILKQAEVVSNSWTV  1044
             PDK+  AVELILKQAEVVSNSWT 
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

5) EJP617_05160 in NC_017445


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1525 bits (5788),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 923/1043 (89%), Positives = 1002/1043 (97%), Gaps = 1/1043 (0%)

Query  1     MLSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRASFQDVFLRPVLRQQLTQINPHL  60
             MLSEDDLEQLSLGWFAGQGWEVL GPDIAPDG NPLR SF+DVFLRP++R+QL  +NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PDSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVAYKRDDRTMHDTALLMDFNRPDN  120
             P S++DE++SR+TRPESPDIV SNKAFHHLLL+GVPV YKRDD+ +HDTALLMDFN+P+N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFSVVNQVAIKGTKQVRRPDVIAYINGLPVAVIELKSPVDASADIWAAFNQLQTYKNEV  180
             NRF+VVNQVAI GTKQ+RRPDVI YINGLP+AVIELKSP D +ADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTVSSEDDKPVRECQLETLINGFFNRE  240
             SDLFICNE LVISDGYNARIGSLTADEER+LPWKT+S+EDDKP+ E QLE ++NGFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYLRYFILFEHDGQRTMKKIAACHQFHAVREAVSATIVAATGQFLPLRSDIKPGSKK  300
             LLLDY+RYFILFE DG+R +KKIAA HQFHAVREAV+ATIVA+TG+FLPLRS+IKPGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCqaqdllkq  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   qpqqaSDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420
             +PQQAS+R+QLR MLAAR SGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLNATLDRQSGAYKFGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYVSIYDIQ  480
             YGL+ATLD++ GAYK+GYAKHMRDALPNA+FMGFTGTPVS+EDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNH+ELEALSSQV++LVEDEE++QKEKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSRPRIEQVAADLVRHFEARNATMDGKAMIVAMSRDICVRLYDALVDLRPQWHSEDVEQG  600
             GS PRI QVAADLV+HF ARNATM+GKAMIVAMSRDICVRLY+ALV LRP+WHSEDVE+G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKIIMTGSASDKASLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  660
              IKIIMTGSASDK  LQPHIYNK TKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  720
             MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREALAILLEKLDIIHGMFAKTPTDAGFDYSAFADNPQRVLLDAANYILGLEDGKKRYFD  780
             AR+A+A+LLEKLD+IHGMFAKT TD+GFDYSAF +NPQ+VLLDAANYILGL+DGKKRYFD
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKLTTTDQKFSQSEKHSLLSRILDN  840
             VVLALNKA SLCSTLDE KPLQKELAFLSAVKVA+IKLTTTD+KFSQSEK+SLLSRILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  841   AIVASGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELLQKLLNDGIHARTNNN  900
             AIVA+GVDDVFALAGLDKPNIGLLSDEFL+EV++MPQRNLAVELL+KLLNDGIHARTNNN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  901   VVQEKKYSDRLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMARDDALGLNPDEIAFYD  960
             VVQEKKYSDRL+AVLLRY+NRAIETAQVIEELIQMAK+FQAAMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  961   ALAENESAVRELGDEILKKLAVEVTLKLRQSTTVDWQKRESVRARLRILVRQTLRKYKYP  1020
             ALAENESAVRELGDE LKKLA+EVT +LR+STTVDWQ RESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1021  PDKTPYAVELILKQAEVMSNSWT  1043
             PDK+  AVELILKQAEV+SNSWT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

6) H650_18270 in NC_021500


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1509 bits (5727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 898/1044 (87%), Positives = 980/1044 (94%), Gaps = 2/1044 (0%)

Query  1     MLSEDDLEQQCLQWFVEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHL  60
             MLSEDDLEQ  L WF  Q+WEVLHGPDIAPDG NPLR SFHDVFLRP+   QL+T+NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVEYKRDDKVIHDNALLMDFNHPDN  120
             P S+++E+I RITRPESPD+VVSNKAFHHLLL GVPVEYKRDDKVIHD ALLMDFNHP+N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             NRF VVNQVAI G KQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRA  240
             SDLFICNEALV+SDG NARIGSLTADEERFLPWKT++NEDDKP ++ QL  VV+GFFNR 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFVLFESDGKRLIKKIAAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSKK  300
             LLLDYIRYF+LFESDGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPLRSNI PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   TPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNQRSNIVVISDEAHRSQ  420
              P QA++RD+LRE+L ARESGGIIFTTVQKFAPLD+EQ+HPALN R NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTP++SEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNHEELE+LS QVD+LVEDEET+Q+EKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSEPRIKQVAADLVQHFETRNAAMNGKAMIVAMSRDICVKLYDAIVAIRPEWHSEDVEQG  600
             GSEPRIKQVAADLV+HF +RNA+MNGKAMIVAMSRDICV+LY+A+VA+RPEWHSEDVE+G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDQLKLVIVRDMWLTGFDAPCCHT  660
              IK+IMTGSASDK+HLQ+HIYNKQTKKRLEARFKDLND LK+VIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVF+DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLAFLRDAVNYILGLDDGKKRYLD  780
             AR+AFA+LLEK+DVIHGMFA+++  PGFDY++F  +P   L DA NYILGLDDGKKRY+D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VSLAMSKAWSLCNTIDEAKPLQEEFAFLSAIRVGLIKLDPKA-KFSQSEKNSLLSKILDN  839
             V LA++KAWSLC+T+DEAKPLQ E+AFLSA++V++IKL     KFSQSEKNSLLS+ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  840   AVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARSGNN  899
             A+VATGV+DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR+ NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  900   VVQQKKYSDRLKAVLVKYNNRAIETAQVIEELIQMAKEFQEAMARDDALGLNPDEIAFYD  959
             VVQ+KKYSDRL+AVL++YNNRAIETAQVIEELIQMAKEFQ AMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  960   ALAENESAVRKLGDDILKKLAIEVTAQLRKSTTVDWQVRESVRARLRVLVRQTLRKYKYP  1019
             ALAENESAVR LGD+ LKKLAIEVTAQLRKSTTVDWQVRESVRARLR+LVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1020  PDKTPYTVELILKQAEVVSNSWTV  1043
             PDK+  +VELILKQAEVVSNSWT 
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

7) CFSAN002050_05875 in NC_021818


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1504 bits (5711),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 885/1043 (85%), Positives = 982/1043 (95%), Gaps = 2/1043 (0%)

Query  1     MLSEDDLEQQCLQWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHI  60
             MLSEDDLEQ  L WFA QGWEVLHGPDIAPDG NPLR SFHDVFLRP+   QL+T+NPH+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PISVLEEVIQRIAHAHSPDLVVSNKAFHHLLLNGVPVEYKHEDKVIHDNALLMDFNHPDN  120
             P S+++E+I RI++++SPD+VVSNKAFHHLLL+GVPVEYK++DKVIHD ALLMDFNHP+N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEL  180
             NRF VVNQVAI G KQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVVSDGQNARVGSLTADEERFLPWKTVANENDKPQFDWQLKTVVQGFFNRA  240
             SDLFICNEALV+SDG NAR+GSLTADEERFLPWKT++NE+DKP ++ QL  VV+GFFNR 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFVLFENDGKRLIKKIAAYHQFHAVREAVAATIVASTGKHLPLHSNIQPGSKK  300
             LLLDYIRYF+LFE+DGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPL+SNI+PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   TPLQANDRDELRELLNARESGGIIFTTVQKFAPLDGEQSHPALNQRSNIVVISDEAHRSQ  420
              P QA++RD+LRE+L ARESGGIIFTTVQKFAPLDGEQ+HPALN R NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRQTGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTP++SEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNHEELE+LS QVD+LVEDEET+Q+EKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSEPRIQQVAADLVQHFETRNTAMNGKAMIVAMSREICVKLYDAIVVIRPEWHSEDVEQG  600
             GSEPRI+QVAADLV+HF +RN++MNGKAMIVAMSR+ICV+LY+A+V +RPEWHSEDVE+G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFDAPCCHT  660
              IK+IMTGSASDK+HLQ+HIYNKQTKKRLEARFKDLNDPLK+VIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVF+DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLAFLRDAVNYILGLDDGKKRYLD  780
             AR+AFA+LLEK+DVIHGMFA+++  PGFDY++F  +P   L DA NYILGLDDGKKRY+D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VSLAMSKAWSLCNTLDEAEPLQEEFAFLSAIRVGLIKLDPKA-KFSQSEKNSLLSKILDN  839
             V LA++KAWSLC+TLDEA PLQ E+AFLSA++V++IKL     KFSQSEKNSLLS+ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  840   AVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARSGNN  899
             A+VATGV+DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR+ NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  900   VVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQDAMARDDALGLNPDEIAFYD  959
             VVQ+KKYSDRL+AVLL+YNNRAIETAQVIEELIQMAK FQ AMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  960   ALAENESAVRELGDDTLRKLAIEVTRQLRKSTTVDWQVRDSVRARLRVLVRQTLRKYKYP  1019
             ALAENESAVRELGD+TL+KLAIEVT QLRKSTTVDWQVR+SVRARLR+LVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1020  PDKTAGAVELILKQAEVISNHWT  1042
             PDK+ +AVELILKQAEV+SN WT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

8) PCC21_032460 in NC_018525


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1496 bits (5680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 892/1044 (86%), Positives = 975/1044 (94%), Gaps = 2/1044 (0%)

Query  1     MLSEDDLEQQCLKWFAEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQAINPHL  60
             MLSEDDLEQ  L WFA Q+WEVLHGPDIAPDG NPLR SFHDVFLRP+   QL+++NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVEYKREDKTVHDKALLMDFNHTDN  120
             P S+++E+I RITRPESPD+VVSNKAFHHLLL GVPVEYKR+DK +HD ALLMDFNH +N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             NRF VVNQVAI GTKQ+RRPDVI YINGLP+ VIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRE  240
             SDLFICNEALV+SDG NARIGSLTADEERFLPWKT++NEDDKP ++ QL  VV+GFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFVLFEYDGKRLIKKIAAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSKK  300
             LLLDYIRYF+LFE DGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPLRSNI PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQGLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA++LLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   TPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNLRSNIVVISDEAHRSQ  420
              P QA++RD+LRE+L ARESGGIIFTTVQKFAPLD+EQ+HPALNLR NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTP++SEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNYEELETLSDQVDELVEDEETGQQEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLN EELE+LS QVD+LVEDEET+Q+EKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSEPRIKQVAADLVQHFETRNAAMNGKAMVVAMSRDICVKLYNAIVAIRPDWHSTDVEQG  600
             GSEPRIKQVAADLV+HF +RNA+MNGKAM+VAMSRDICV+LYNA+VA+RP+WHS DVE+G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKVIMTGSASDKDHLQAHIYNKQTKKRLETRFKDLNDPLKLVIVRDMWLTGFDAPCCHT  660
              IK+IMTGSASDK+HLQ+HIYNKQTKKRLE+RFKDLNDPLK+VIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVF+DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAVLLEKIDIIHGMFASLAGKSGFSYEGFSRDPLAFLRDAVNYILGLDDGKKRYLD  780
             AR+AFAVLLEK+D+IHGMFA  +  +GF Y +F  +P   L DA NYILGLDDGKKRY+D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VSLAMSKAWSLCNTLDEAEPLQEEFAFLSAVRVGLIKLDPKA-KFGQSEKNSLLSKILDN  839
             V LA++KAWSLC+TLDEA PLQ E+AFLSAV+V++IKL     KF+QSEKNSLLS+ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  840   AVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARSGNN  899
             A+VATGV+DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR+ NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  900   VVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQEAMARDDALGLNPDEIAFYD  959
             VVQ+KKYSDRL+AVLL+YNNRAIETAQVIEELIQMAK FQ AMARDDALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  960   ALAENESAVRELGDETLRKLAIEVTRQLRKSTTVDWQVRESVRARLRILVRQTLRKYKYP  1019
             ALAENESAVRELGDETL+KLAIEVT QLRKSTTVDWQVRESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1020  PDKTAGAVELILKQAEVVSNSWTV  1043
             PDK+ +AVELILKQAEVVSNSWT 
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

9) CSSP291_03040 in NC_020260


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1491 bits (5658),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 883/1043 (85%), Positives = 974/1043 (94%), Gaps = 2/1043 (0%)

Query  1     MLSEDDLEQQCLKWFAEQGWEVLHGPNIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHL  60
             MLSEDDLEQ  L WFA QGWEVLHGP+IAPDG NPLR SFHDVFLRP+   QL+++NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVAVLEEVILRVAHAQSPDLVVSNKAFHHLLLDGVPVEYKREDKVVHDKALLMDFNHPAS  120
             P ++++E+I R+++++SPD+VVSNKAFHHLLL GVPVEYKR+DKV+HD ALLMDFNHP +
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             NRF VVNQVAI GTKQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVISDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             SDLFICNEALVISDG NARIGSLTADEERFLPWKTISNEDDKP ++ QL  VV+GFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFVLFENDGKRLIKKIAAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSKK  300
             LLLDYIRYF+LFE+DGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPLRSNI PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   TPLQANDRDELRELLNARESGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISDEAHRSQ  420
              P QA++RD+LRE+L ARESGGIIFTTVQKFAP D+EQ+HPALN R NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTP++SEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNHEELEALS QVD+LVEDEET+Q+EKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHSEDVEKG  600
             GS PRI+QVAADLV+HF  RNA+M GKAMIVAMSRDICV+LY+A+VA+RP+WHSEDVEKG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFDAPCCHT  660
              IK+IMTGSASD++ LQPHIYNKQTKKRLE+RFKDLNDPLK+VIVRDMWLTGFDAPCCHT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVF+DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLAFLRDAVNYILGLDEGKKRYLD  780
             AR+AFAVLLEK+D+IHGMF+ ++  PGF Y +F  +P   L DA NYILGLD+GKKRY+D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAA-KFSQSEKNSLLSKILDN  839
             V LA+ KAWSLC+TLDEAKPLQ E+AFLSA++VA++KL  +  KFSQSEKNSLLS+ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  840   AVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARSGNN  899
             A+VATGV+D+FAL GLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR+ NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  900   VVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMARDEALGLNPDEIAFYD  959
             VVQ+KKYSDRL+AVLL+YNNRAIETAQVIEELI MAK FQ AMARD+ALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  960   ALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRARLRILVRQTLRKYKYP  1019
             ALAENESAVRELGD+ LKKLA+EVT +LR+STTVDWQVRESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1020  PDKTLHAVELILKQAEVVSNSWT  1042
             PDK+L+AVELILKQAEVVSNSWT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

10) ESA_00617 in NC_009778


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1464 bits (5557),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 877/1043 (85%), Positives = 973/1043 (94%), Gaps = 2/1043 (0%)

Query  1     MLSEDDLEQQCLKWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHL  60
             MLSEDDLEQ  L WFA QGWEVLHGPDIAPDG NPLR SFHDVFLRP+   QL+++NPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVAVLEEVILRVAHAQSPDLVISNKAFQHLLLDGVPVEYKRENKVVHDKALLMDFNHPAS  120
             P ++++E+I R+++++SPD+V+SNKAF+HLLL GVPVEYKR++KV+HD ALLMDFNHP +
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             NRF VVNQVAI GTKQ+RRPDVI YINGLP+AVIELKSP D NADIWAAFNQLQTYKNE+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             SDLFICNEALV+SDG NARIGSLTADEERFLPWKTISNEDDKP ++ QL  VV+GFFNRE
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LLLDYIRYFVLFENDGKRLIKKIAAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSKK  300
             LLLDYIRYF+LFE+DGKRLIKKIAAYHQFHAVREAV ATIVASTGK LPLRSNI PGSKK
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQAQDLLKQ  360
             AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY+TFCQA+DLLKQ
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  361   TPLQANDreelrellnareSGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISDEAHRSQ  420
              P QA++R++LRE+L ARESGGIIFTTVQKFAP D+EQ+HPALN R NIVVISDEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  421   YGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYVSIYDIQ  480
             YGLSATLD++ G YKYGYAKHMRDALPNASFMGFTGTP++SEDKDTRAVFGDYVSIYDIQ
Sbjct  421   YGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  481   DAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWSRLEKLV  540
             DAVDDGATVPIYYESRLAKLDLNHEELEALS QVD+LVEDEET+Q+EKTKGDWSRLEKLV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  541   GSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHSEDVEKG  600
             GS PRI+QVAADLV+HF  RNA+M GKAMIVAMSRDICV+LY+A+VA+RP+WHSEDVEKG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  601   AIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFDAPCCHS  660
              IK+IMTGSASD++ LQPHIYNKQTKKRLE+RFKDLNDPLK+VIVRDMWLTGFDAPCCH+
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  661   MYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTVD  720
             MYIDKPMRGHNLMQAIARVNRVF+DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  721   AREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLAFLRDAVNYILGLDEGKKRYLD  780
             AR+AFAVLLEK+D+IHGMF+ ++  PGF Y +F  +P   L DA NYILGLD+GKKRY+D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  781   VSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAA-KFSQSEKNSLLSKILDN  839
             V LA+ KAWSLC+TLDEAKPLQ E+AFLSA++VA++KL  +  KFSQSEKNSLLS+ILDN
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  840   AVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARSGNN  899
             A+VATGV+D+FAL GLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR+ NN
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  900   VVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMARDEALGLNPDEIAFYD  959
             VVQ+KKYSDRL+AVLL+YNNRAIETAQVIEELI MAK FQ AMARD+ALGLNPDEIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  960   ALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRARLRILVRQTLRKYKYP  1019
             ALAENESAVRELGD+ LKKLA+EVT +LR+STTVDWQVRESVRARLRILVR+TL KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1020  PDKTPHAVELILKQAEVVSNSWT  1042
             PDK+ +AVELILKQAEVVSNSWT
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

11) Nwat_1306 in NC_014315


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1262 bits (4788),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 722/1051 (69%), Positives = 909/1051 (87%), Gaps = 10/1051 (0%)

Query  1     MTEEQLEQQCLQWFAEGGWEIAHGPDLAPDGEAPERADYRQVLLLADLEAAIKRINPHLS  60
             ++E++LEQ  L WFA  GWE+ HGPD+APDG  P R  +++V+L + +   +  +NPHL+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    QSAVEQAIAVVRKPESLDVVISNRVFHRLLLNGVPVEYKHDDKLVHDRALLVDFRDLTAN  120
              S  ++ I+ + +PES D+V+SN+ FH+LLL+GVPVEYK+DDK++HD ALL+DF +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFRAINQFTLAGSRQLRRPDVICFINGLPLAVLELKSPGAENANIWDAYHQIQTYKDEIP  180
             RF  +NQ +++G++QLRRPDVIC+INGLP+AV+ELKSP+  NA+IW A++Q+QTYK+EI+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFAYNEAAIISDGYGARVGSLTASQERYMPWRTIKHEDDKPLLEWQLETMVRGFFDREL  240
             DLF  NEA +ISDGY AR+GSLTA +ER++PW+TI +EDDKPLLE QLE +V GFF+REL
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   FLDYLRYFVIFEADSDKLIKKIAGYHQFHGVREAVKATVIAAQAPEQGYWAKEKRATYGD  300
             +LDY+RYF++FE+D+ +LIKKIA+YHQFH+VREAV+AT++A+ +         K      
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTG---------KFLPLRS  292

Query  301   EVQPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPGMNNPTLMVVTDRNDLDGQLFATFS  360
             +++PGSKKAGVVWHTQGSGKS+SMCCYAGKLLQQ+ MNNPT++VVTDRNDLDGQL++TF 
Sbjct  293   NIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFC  352

Query  361   AARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDETGHPVLNDRHNIVVI  420
              A++LLKQEP QA +RD LR +L+ RESGGIIFTTVQKFA L++E +HP LN R+NIVVI
Sbjct  353   QAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVI  412

Query  421   SDEAHRSQYGLKATLKRDGSYTFGYARHLRDALPNASFIGFTGTPIEREDRDTRAVFGDY  480
             SDEAHRSQYGL ATL +DG+Y +GYA+H+RDALPNASF+GFTGTP+  ED+DTRAVFGDY
Sbjct  413   SDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  472

Query  481   VSIYDIQDAVDDGATVPIFYESRLAKLDLNRDLIGELSeqveemveddedvGSREKTKGE  540
             VSIYDIQDAVDDGATVPI+YESRLAKLDLN++ +  LS QV+++VED+E  + +EKTKG+
Sbjct  473   VSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKTKGD  531

Query  541   WSRLEKLVGAGPRLKQVAEDLVSHFETRSRTLSGKAMIVAMSREICVHLYNEIVALRPAW  600
             WSRLEKLVG+ PR+KQVA DLV HF +R+ T++GKAMIVAMSR+ICV+LYN +VALRP W
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  601   HDDDPEKGAIKVVMTGSASDRALLQPHIYNKQTKKRFEKRFKDSNDSLKLVIVRDMWLTG  660
             H +D EKG IK++MTGSASD+  LQPHIYNKQTKKR+E RFKD ND+LK+VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  661   FDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAK  720
             FDAPCCHTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD+K
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  721   GKGSPTHSAEEAYAILLEKLAIIHGLFAPGPQGQGFNYNGFETGPHKLLVPTANYVLSLE  780
             GKG  T  A +A+A+LLEKL +IHG+FA    + GF+Y++FE  P+ +L+ +ANY+L+L+
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  781   DGKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFWSQVKIAITKFTSVDKKLTEEDKNT  840
             DGKKR++D VLA+NKA SLC+TLDEA++LQKE+AF S VK+AI K+T+ DKK+++ +KN+
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  841   ALKQILDNALVAEGVTDVFALCGLDRPNIGLLSDEFLEDVRQMPYKNFAVELLEKLLKDN  900
              L +ILDNA+VA GV DVFAL GLD+PNIGLLSDEFLE+VR+MP +N+AVELLEKLL+D 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  901   IKARTRSNVVQEKKYADRLQATLRQYNNRGIETAQVMEELIAMAKQFQAELERDEALGLN  960
             I ART +NVVQEKKY+DRL+A L +YNNR+IETAQV+EELI MAK+FQA + RD+ALGLN
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  961   LDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRKSTTVDWQVRESVRAKLRILVRR  1020
              DE+AFYDALA+NESAVRELGDETLKK+A+E+T +LRKSTTVDWQVRESVRA+LRILVR+
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1021  TLQRYQYPPDKAPEAVELILQQAEVLSDEWT  1051
             TL +Y+YPPDKA +AVELIL+QAEV+S+ WT
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

12) Maqu_3386 in NC_008740


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1254 bits (4756),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 739/1051 (71%), Positives = 906/1051 (87%), Gaps = 10/1051 (0%)

Query  1     MTEDQLEQQCLQWFAEGGWEIAHGPDLASDGEAPERADYRQVLLLADLEAAIQRINPHLP  60
             ++ED+LEQ  L WFA  GWE+ HGPD+A+DG  P R  +++V+L + +   ++ +NPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    QSAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVEYKRDDKVVHDQAFLVDFGDLTAN  120
              S  ++ ++ + +PES D+V+SN+AFH+LLL GVPVEYKRDDKV+HD A+L+DF +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWDAYNQVQTYKDECS  180
             RF  +NQ +I G+KQLRRPDVIC+INGLP+AV+ELKSP+  N +IW A+NQ+QTYK+E S
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFAYNEAAVISDGYLARVGSLTASQERYMPWRTLRHEDDKPLLEWQLETMVRGFFDREL  240
             DLF  NEA VISDGY AR+GSLTA +ER++PW+T+ +EDDKPLLE QLE +V GFF+REL
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   FLDYIRYFVIFETDSDKLIKKIAGYHQFHAVCEAVKATVIAAQAPEHGHWAKEKRATYGD  300
             +LDYIRYF++FE+D+ +LIKKIA+YHQFHAV EAV+AT++A+ +         K      
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTG---------KFLPLRS  292

Query  301   EVLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFATFS  360
             ++ PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQ+EMNNPT++VVTDRNDLDGQL++TF 
Sbjct  293   NIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFC  352

Query  361   AVRELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPILNDRHNIVVI  420
               ++LLKQEP QA +RD LR +L+ RESGGIIFTTVQKFA L++E +HP LN R+NIVVI
Sbjct  353   QAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVI  412

Query  421   SDEAHRSQYGLKATLKKDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKDTRAVFGDY  480
             SDEAHRSQYGL ATL KDG+YK+GYA+HMRDALPNASF+GFTGTP+ SEDKDTRAVFGDY
Sbjct  413   SDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  472

Query  481   VSIYDIQDAVDDGATVPIFYESRLAKLDINREQIEELSdqveevveddedvGSREKTKGE  540
             VSIYDIQDAVDDGATVPI+YESRLAKLD+N+E++E LS QV+++VED+E  + +EKTKG+
Sbjct  473   VSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKTKGD  531

Query  541   WSRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYNEIVALRPEW  600
             WSRLEKLVG+ PR+KQVA DLV+HF +R++T++GKAMIVAMSR+I V+LYN +VALRPEW
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  601   HDDDPEKGAIKIVMTGSASDRALLQPHIHNKQTKKRFEKRFKDINDPLRLVIVRDMWLTG  660
             H +D EKG IKI+MTGSASD+  LQPHI NKQTKKR+E RFKD+NDPL++VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  661   FDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAK  720
             FDAPCCHTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD+K
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  721   GKGSPTHSAEEAYAILLEKLDIIHGMFAPGPKGKGFSYSGFDTEPRKVLLATANYVLSLE  780
             GKG  T  A +A+A+LLEKLD+IHGMFA    + GF YS+F+ +P+ VLL +ANY+L+L+
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  781   DGKKRFLDTVLAMNKAFSLCATLDEAQTLQKEVAFLSQVKTAITKFTSVDKKLTEEEKNT  840
             DGKKR++D VLA+NKA SLC+TLDEA+ LQKE+AFLS VK AI K+T+ DKK+++ EKN+
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  841   ALRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQMPYKNFAVellekllkdd  900
              L +IL+NA++A GV DVFAL GLDKPNIGLLSDEFLE+VR+MP +N+AVELLEKLL+D+
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  901   IKAKTRNNVVQEKKYADRLQETLRKYNNRGIETAQVIEELIAMAKQFQAEMERDAALGLN  960
             I A+T NNVVQEKKY+DRL+  L +YNNR+IETAQVIEELI MAK+FQA M RD ALGLN
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  961   PDEVAFYDALASNESAVRELGDEILKKIAVEITDKLRKSTTVDWQVRESVRAKLRILVRR  1020
             PDE+AFYDALA NESAVRELGDE LKK+A+E+T +LRKSTTVDWQVRESVRA+LRILVR+
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1021  TLQRYKYPPDKAPAAIELIMEQAEALSNHWT  1051
             TL +YKYPPDKA  A+ELI+ QAE +SN WT
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

13) hsdR in NC_020547


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1249 bits (4737),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 735/1043 (71%), Positives = 907/1043 (87%), Gaps = 11/1043 (1%)

Query  1     MNETQLENLCLDWFTENGWEVVHGIDIAPESSNPLRKDYKQVLIESDLHAAFERLNPHLP  60
             ++E +LE+L L+WF+ +GWEV+HG DIAP++ NPLR  + +V++ + ++  +E LNPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    TSCFEQVWQKLSKPESLDLVTNNRAFHRMLLEGVPVTYKKQDDWVHDHAFLVDFNHVHQN  120
             +S F+++  ++++PES D+V +N+AFH++LL GVPV YK++D  +HD A+L+DFNH ++N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFVAINQFTILGTKQPRRPDIICFINGIPFAVLELKSPTDENADIWDAFNQLQTYKEEVS  180
             RF  +NQ +I GTKQ RRPD+IC+ING+P+AV+ELKSP+D NADIW AFNQLQTYK+E+S
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFIFNEALVVSDGVTARVGSLAANQERFLPWRTIKNEDDKPALEWELETVVRGFFDREL  240
             DLFI NEALV+SDG  AR+GSL+A++ERFLPW+TI NEDDKP LE +LE VV GFF+REL
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   FLDYIRFFVLFETDGEKIIKKIAGYHQFHAVREAVQATIAAANPN----------GDKKA  290
             +LDYIR+F+LFE+DG ++IKKIA+YHQFHAVREAV+ATI A+  +          G KKA
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  291   GVVWHTQGSGKSISMCCYAGKLLQQPAMHNPTLLIVTDRNDLDGQLFETFSNAQDLLKQT  350
             GVVWHTQGSGKSISMCCYAGKLLQQ+ M+NPT+++VTDRNDLDGQL+ TF +A+DLLKQ 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  351   PVQANNRDELRRFLAERESGGIIFTTVQKFALLDDESEHPLLNGRHNIVVMSDEAHRSQY  410
             P QA+NRD+LR  LA RESGGIIFTTVQKFA LD+E  HP LN R+NIVV+SDEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  411   GLKAKLSNDGTYKFGYAKHMRDALKNAAFIGFTGTPISSEDKDTRAVFGDYVSIYDIQDA  470
             GL A L +DG+YK+GYAKHMRDAL NA+F+GFTGTP+SSEDKDTRAVFGDYVSIYDIQDA
Sbjct  422   GLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDA  481

Query  471   VDDGATVPIYYESRLAKLDINQTEIEDLSdqvdevvedeedvGNREKTKSEWSRLEKLVG  530
             VDDGATVPIYYESRLAKLD+N+ E+E LS QVD++VEDEE  +++EKTK++WSRLEKLVG
Sbjct  482   VDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKTKGDWSRLEKLVG  540

Query  531   ATPRLKQIAADLVTHFEARTETTAGKGMIVTMSREICVHLYNEIVALRPDWHEPDPEKGK  590
             + PR+KQ+AADLV HF AR  T  GK+MIV+MSR+ICV+LYN +VALRP+WH  D EKG 
Sbjct  541   SEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGE  600

Query  591   IKIVMTGSASDKPLLQRHIYNKQVKKRLEKRFKDVNDPLQLVIVRDMWLTGFDAPCTHTM  650
             IKI+MTGSASDK  LQ HIYNKQ KKRLE RFKD+NDPL++VIVRDMWLTGFDAPC HTM
Sbjct  601   IKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTM  660

Query  651   YIDKPMKGHNLMQTIARVNRVFKDKQGGLVVDYIGIANELKQALKTYTDAKGKGEPTLRA  710
             YIDKPM+GHNLMQ+IARVNRVFKDK GGLVVDYIGIANELKQALKTYTD+KGKG+ T+ A
Sbjct  661   YIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDA  720

Query  711   EEAYAVLAEKMDAIRGMFAKTNEQAGMDLSAYETQAHRLIIPAANYVLSLKDGKKRFLDL  770
              +A+AVL EK+D I+GMFAKT  ++G D SA+E +++++++ AANY+L+L DGKKR++D+
Sbjct  721   RDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDV  780

Query  771   VLAINKAFSLCSTLDEAKNLHKEIAFYLAIKAVISKHTSVDRKLSQAEKDSTLKQILDNA  830
             VLA+NKA SLCSTLDEAK L+KE+AF  A+K  I K T+ D+K+SQ+EK+S L +ILDNA
Sbjct  781   VLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNA  840

Query  831   VIADGVTDVFAMCGLDKPNIGLLSDEFLEDVRQMPYRNLAVELLEKLLNDGIKAKTRNNV  890
             ++A GV DVFA+ GLDKPNIGLLSDEFLE+VR+MP RNLAVELLEKLLNDGI A+T NNV
Sbjct  841   IVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNV  900

Query  891   VQEKRFSDRLQETLRKYNNRAIETSQVIEELIQMAKEFQAEMQREAALGLNPDEIAFYDA  950
             VQEK++SDRL+  L +YNNRAIET+QVIEELIQMAKEFQA M R+ ALGLNPDEIAFYDA
Sbjct  901   VQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDA  960

Query  951   LANNESAVRELGDDTLKQIAREITEKLRKSTTVDWQVRDSVRAQLKILVRRTLQRWKYPP  1010
             LA+NESAVRELGD+TLK++A E+T +LRKSTTVDWQVR+SVRA+L+ILVR+TL + KYPP
Sbjct  961   LAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPP  1020

Query  1011  DKAAEAIELVMKQAETLSNAWTS  1033
             DKA +A+EL++KQAE +SN+WT+
Sbjct  1021  DKALDAVELILKQAEVVSNSWTA  1043

14) Noc_1804 in NC_007484


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1249 bits (4740),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 737/1062 (70%), Positives = 911/1062 (86%), Gaps = 29/1062 (2%)

Query  1     MTEEQLEQQCLAWFAEGGWELAHGSDLAPG-----RADYRQVWLLADLEAAIRRINPHLP  55
             ++E++LEQ  L+WFA  GWE+ HG+D+AP+     R  +++V L + +   +  +NPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  56    ESCIEQVVAVVGKPESLDTVVSNRAFHRLLLEGVPVEYKTLSSLSPWERAGVREREEKIV  115
              S ++++++ + +PES D VVSN+AFH+LLL GVPVEYK               R++K++
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK---------------RDDKVI  106

Query  116   HDRALLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPLAVLELKSPHAENVDI  175
             HD ALL+DF++ + NRF  +NQ ++ G+KQLRRPD+IC+INGLP+AV+ELKSP   N DI
Sbjct  107   HDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADI  166

Query  176   WDAFHQLQTYKDEIPELFVFNEALVISDGYHARVGSLTANQERFMPWRTLKHEDDKPLLD  235
             W AF+QLQTYK+EI++LF+ NEALVISDGY+AR+GSLTA++ERF+PW+T+ +EDDKPLL+
Sbjct  167   WAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE  226

Query  236   WQLETLVRGFFDRELFLDYLRYFVIFETDSGRLSKKIAGYHQFHAVREAVKATVIAAQEP  295
              QLE +V GFF+REL+LDY+RYF++FE+D+ RL KKIA+YHQFHAVREAV+AT++A+   
Sbjct  227   HQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS---  283

Query  296   RQRWAGEKRATYADDLVPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPEMNNPTLMVVT  355
                    K      ++ PGSKKAGVVWHTQGSGKS+SMCCYAGKLLQQ+EMNNPT++VVT
Sbjct  284   -----TGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVT  338

Query  356   DRNDLDGQLFATFSAAKELLKQEPVQAEDRDTLRRLLAERASGGIIFTTVQKFALLDGEN  415
             DRNDLDGQL++TF  AK+LLKQEP QA +RD LR +LA R SGGIIFTTVQKFA LDGE+
Sbjct  339   DRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQ  398

Query  416   DHPILNDRHNIVVISDEAHRSQYGLKATLKKDGRYTFGYAKHMRDALPNASFIGFTGTPI  475
              HP LN R+NIVVISDEAHRSQYGL ATL KDG Y +GYAKHMRDALPNASF+GFTGTP+
Sbjct  399   AHPALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPV  458

Query  476   ANEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINRELIEKLSdqveavve  535
             ++EDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLD+N+E +E LS QV+ +VE
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  536   deedLGQREKTKGEWSRLEKLVGSGPRLKQVAADLVRHFEIRSQSMDGKAMIVAMSREIC  595
             DEE  +Q+EKTKG+WSRLEKLVGS PR+KQVAADLV+HF  R+ +M+GKAMIVAMSR+IC
Sbjct  519   DEET-DQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDIC  577

Query  596   VHLYNEIVALRPDWHDPDPEKGAIKIVMTGSASDRPLLQPHLYNQQTKKRLEKRFKDIYD  655
             V+LYN +VALRP+WH  D EKG IKI+MTGSASD+  LQPH+YN+QTKKRLE RFKD+ D
Sbjct  578   VRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLND  637

Query  656   PLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIA  715
             PLK+VIVRDMWLTGFDAPCCHTMY+DKPM+GHNLMQAIARVNRVFK+KPGGLVVDYIGIA
Sbjct  638   PLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  697

Query  716   NALKQALKTYTDAKGKGEPTHSAEEAFAVLLEKLDIIHGLFAKTPQNAGFDYSSFEHEAT  775
             N LKQALKTYTD+KGKG+ T  A +AFAVLLEKLD+IHG+FAKT  ++GFDYS+FE+++ 
Sbjct  698   NELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ  757

Query  776   RLLIPTANYILSLEGGKKRFLDTILAVNMAYSLCGTLEEARAYHKEVAFLSAVKAALTKH  835
             ++L+ +ANYIL+L++GKKR++D +LA+N A SLC+TL+EA++ +KE+AFLSAVK A+ K 
Sbjct  758   HVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  836   TRVDKKLTQEEKNSALKQILDNALVAEGVTDVFALCGLDKPNIGLLSEEFLEDVRRMPYK  895
             T  DKK++Q EKNS L +ILDNA+VA GV DVFAL GLDKPNIGLLS+EFLE+VR MP +
Sbjct  818   TTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQR  877

Query  896   NFAVELLEKLLKDNIKAKTRNNVVQEKKYADRLQETLRQYNNRGIETAQVIEELIAMAKQ  955
             N+AVELLEKLL+D I A+T NNVVQEKKY+DRL+  L +YNNR+IETAQVIEELI MAK+
Sbjct  878   NLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKE  937

Query  956   FQAELERDEALGLNPDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRRSTTVDWQV  1015
             FQA + RD+ALGLNPDE+AFYDALA+NESAVRELGDETLKK+A+E+T +LR+STTVDWQV
Sbjct  938   FQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQV  997

Query  1016  RESIRAKLRILVRRTLQRYKYPPDKAPEAVELILQQAEVLSD  1057
             RES+RA+LRILVR+TL +YKYPPDKA +AVELIL+QAEV+S+
Sbjct  998   RESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

15) MARHY0349 in NC_017067


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1248 bits (4735),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 739/1050 (71%), Positives = 907/1050 (87%), Gaps = 9/1050 (0%)

Query  1     MTEDQLEQQCLEWFAEGGWEIAHGPDLAPDGEAPGRADYRQVLLLADLEAAITRINPHLP  60
             ++ED+LEQ  L WFA  GWE+ HGPD+APDG  P R  +++V+L + +   +  +NPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    QSAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVEYKRDDKVVHDQAFLVDFGDLAAN  120
              S  ++ ++ + +PES D+V+SN+AFH+LLL GVPVEYKRDDKV+HD A+L+DF +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWNAYNQIQTYKDECS  180
             RF  +NQ +I G+KQLRRPDVIC+INGLP+AV+ELKSP+  N +IW A+NQ+QTYK+E S
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFAYNEAAIISDGYLARVGSLTATQERYMPWRTLKHEDDKPLLEWQLETMVRGFFDREL  240
             DLF  NEA +ISDGY AR+GSLTA +ER++PW+T+ +EDDKPLLE QLE +V GFF+REL
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   FLDYLRYFVIFETDSDKLIKKIAGYHQFHAVREAVKATVIAAQDISGPGISEKRATYGDE  300
             +LDY+RYF++FE+D+ +LIKKIA+YHQFHAVREAV+AT++A+        + K      +
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS--------TGKFLPLRSN  293

Query  301   VLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFATFSA  360
             + PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQ+EMNNPT++VVTDRNDLDGQL++TF  
Sbjct  294   IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ  353

Query  361   ARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPVLNDRHNIVVIS  420
             A++LLKQEP QA +RD LR +L+ RESGGIIFTTVQKFA L++E +HP LN R+NIVVIS
Sbjct  354   AKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVIS  413

Query  421   DEAHRSQYGLKATLKKDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKDTRAVFGDYV  480
             DEAHRSQYGL ATL KDG+YK+GYA+HMRDALPNASF+GFTGTP+ SEDKDTRAVFGDYV
Sbjct  414   DEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  481   SIYDIQDAVDDGATVPIFYESRLAKLDINReqieelseqveevveddedvGSREKTKGEW  540
             SIYDIQDAVDDGATVPI+YESRLAKLD+N+E++E LS QV+++VED+E  + +EKTKG+W
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKTKGDW  532

Query  541   SRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYNEIAALRPEWH  600
             SRLEKLVG+ PR+KQVA DLV+HF +R++T++GKAMIVAMSR+I V+LYN + ALRPEWH
Sbjct  533   SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  601   DDDPEKGAIKIVMTGSASDRPLLQPHIHNKQTKKRFEKRFKDINDPLKLVIVRDMWLTGF  660
              +D EKG IKI+MTGSASD+  LQPHI NKQTKKR+E RFKD+NDPLK+VIVRDMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  661   DAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKG  720
             DAPCCHTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD+KG
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKG  712

Query  721   KGTPTHSAEEAYAILLEKLDIIHGMFAPGPKGEGFSYSGFETEPHKFLVPTANYVLSLED  780
             KG  T  A +A+A+LLEKLD+IHGMFA    + GF YS+FE +P+  L+ +ANY+L+L+D
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDD  772

Query  781   GKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFLSQVKTAITKFTSVDKKLTEEEKNTA  840
             GKKR++D VLA+NKA SLC+TLDEA++LQKE+AFLS VK AI K+T+ DKK+++ EKN+ 
Sbjct  773   GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL  832

Query  841   LRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQMPYKNFAVellekllkddI  900
             L +IL+NA++A GV DVFAL GLDKPNIGLLSDEFLE+VR+MP +N+AVELLEKLL+D+I
Sbjct  833   LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGI  892

Query  901   KAKTRNNVVQEKKYADRLQETLSKYNNRGIETAQVIEELIAMAKQFQAELERDAALGLNP  960
              A+T NNVVQEKKY+DRL+  L +YNNR+IETAQVIEELI MAK+FQA + RD ALGLNP
Sbjct  893   HARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNP  952

Query  961   DEVAFYDALASNESAVRELGDETLKKIAVEITDKLRKSTTVDWQVRESVRAKLRILVRRT  1020
             DE+AFYDALA NESAVRELGDETLKK+A+E+T +LRKSTTVDWQVRESVRA+LRILVR+T
Sbjct  953   DEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  1021  LQRYKYPPDKAPAAIELIMEQAEALSNHWT  1050
             L +YKYPPDKA  A+ELI+ QAE +SN WT
Sbjct  1013  LLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

16) CYCME_0985 in NC_021917


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1239 bits (4701),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 759/1060 (72%), Positives = 914/1060 (87%), Gaps = 18/1060 (1%)

Query  1     MINEQTLEENCLAWFEQGGWEVFNGADIAPDSPYPQRDDFSQVVLNGQLRTAFERINTHI  60
             M++E+ LE+  L+WF   GWEV++G+DIAPD+  P R  F +V L   +R  +E +N H+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PEQQIEHCFDQFKAIVLKPESLDLITNNRAFHRLLLEGVPVEYKKDDGESSTDGETVSDH  120
             P       FD++ + + +PES D++ +N+AFH+LLL GVPVEYK+DD         + D 
Sbjct  61    PASL----FDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDD-------KVIHDT  109

Query  121   AFIIDFDNLNNNTFSVVNQFTITGTKQPRRPDVICFINGLPIAVLELKSPSDENADIWDA  180
             A+++DF++ +NN F+VVNQ +I+GTKQ RRPDVIC+INGLPIAV+ELKSPSD NADIW A
Sbjct  110   ALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAA  169

Query  181   FNQLQTYKDEVSDLFIFNEALVVSDGYTARVGSLTANQERFMPWRTIKSENDKPLLEWQL  240
             FNQLQTYK+E+SDLFI NEALV+SDGY AR+GSLTA++ERF+PW+TI +E+DKPLLE QL
Sbjct  170   FNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQL  229

Query  241   ETMVRGFFDRELLLDYIRFFVLFETDGEQIIKKIAGYHQFHAVREAVKATVIAAQQIDGV  300
             E +V GFF+RELLLDYIR+F+LFE+DG ++IKKIA+YHQFHAVREAV+AT++A+      
Sbjct  230   ENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS------  283

Query  301   TEKRATYADEVVPGSKKAGVVWHTQGSGKSISMCCYAGMLLQQKAMNNPTLIVVTDRNDL  360
             T K      ++ PGSKKAGVVWHTQGSGKSISMCCYAG LLQQ  MNNPT++VVTDRNDL
Sbjct  284   TGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDL  343

Query  361   DGQLYATFCNAVELLKQTPVQASDRDALRQLLAERESGGIIFTTVQKFALLDDEKHHPIL  420
             DGQLY+TFC+A +LLKQ P QAS+RD LR++LA RESGGIIFTTVQKFA LD+E+ HP L
Sbjct  344   DGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPAL  403

Query  421   NDRHNIVVISDEAHRSQYGLKATLSADGQYKFGYAKHMRDALPSASFIGFTGTPISQEDK  480
             N R+NIVVISDEAHRSQYGL ATL  DG YK+GYAKHMRDALP+ASF+GFTGTP+S EDK
Sbjct  404   NLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDK  463

Query  481   DTRAVFGGYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHAEIAELSdqvdevvedeedv  540
             DTRAVFG+YVSIYDIQDAVDDGATVPIYYESRLAKLDLNH E+  LS QVD++VEDEE  
Sbjct  464   DTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-  522

Query  541   SNREKTKGEWSRLEKLVGATPRLSQVAADLIEHFETRNATMDGKAMIVAMSRDICAHLYN  600
              ++EKTKG+WSRLEKLVG+ PR+ QVAADL+ HF +RNATM+GKAMIVAMSRDIC +LYN
Sbjct  523   DQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYN  582

Query  601   EIIALRPEWHSDDPEKGAIKIVMTGSASDKPLLQPHIYNkktkkrlekrfkDLNDPLKLV  660
              ++ALRPEWHS+D EKG IKI+MTGSASDK  LQPHIYNK+TKKRLE RFKDLNDPLK+V
Sbjct  583   ALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIV  642

Query  661   IVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKQ  720
             IVRDMWLTGFDAPCCHTMY+DKPM+GHNLMQAIARVNRVFK+KPGGLVVDYIGIANELKQ
Sbjct  643   IVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQ  702

Query  721   ALKTYTDSKGKGEPTLNAEEAFSILLEKIDAIRGMFGKTPKSDGLDISGYESQAHKLLVP  780
             ALKTYTDSKGKG+ T++A +AF++LLEK+D I+GMF+KT    G+D S++E++++ +L+ 
Sbjct  703   ALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLD  762

Query  781   AANYVLGLEDGKKRFLDLVLAATKSYSLCSTLDEAKELRKEIAFYSAIKAAISKFTSVDR  840
             AANY+LGL+DGKKR++D+VLA  K+ SLCSTLDEAK L+KE+AF SA+K AI K+T+ D+
Sbjct  763   AANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK  822

Query  841   KRTQEEKNSALKQILDNAVIAEGVADVFALCGLDKPNIGLLSDEFLEDVRQMPERNLAVe  900
             K +Q EKNS L +ILDNA++A GV DVFAL GLDKPNIGLLSDEFLE+VR+MP+RNLAVE
Sbjct  823   KFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVE  882

Query  901   llekllkddIKAKTRNNVVQEKKYADRLQETLRKYNNRAIETAQVIEELIQMAKEFQEEM  960
             LLEKLL+D+I A+T NNVVQEKKY+DRL+  L +YNNRAIETAQVIEELIQMAKEFQ  M
Sbjct  883   LLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAM  942

Query  961   MREAELGLNPDEIAFYDALANNESAVRELGDEILKKIAVEITDKLRKSTTVDWQVRDSVR  1020
              R+  LGLNPDEIAFYDALA+NESAVRELGDE LKK+A+E+T +LRKSTTVDWQVR+SVR
Sbjct  943   ARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVR  1002

Query  1021  AKLKILVRRTLQRYKYPPDKAAEAVELVLKQAESLSNSWT  1060
             A+L+ILVR+TL +YKYPPDKA +AVEL+LKQAE +SNSWT
Sbjct  1003  ARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

17) MM_0431 in NC_003901


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1212 bits (4597),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 735/1058 (70%), Positives = 904/1058 (86%), Gaps = 22/1058 (2%)

Query  1     MNEDQLEQLCLEWFRDNSWDVLYGPDIAPDSDNPERKDYREVILKHYLQESLEKINLHLP  60
             ++ED+LEQL L WF +++W+VL GPDIAPD+ NP R  +++V+L+  ++  LE +N HLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    FNAIEQAIALVLKPESLDLITNNRAFHRLLLEGVPVEYRKDDETIHDRAFLIDFENIANN  120
              + +++ I+ + +PES D++ +N+AFH+LLL GVPVEY++DD  IHD A+L+DF++  NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFLAVNQFTIQGTKRPRRLDVVCFINGLPIAVLELKSPEDENVDIWDAFNQLQTYKDEIS  180
             RF  VNQ +I GTK+ RR DV+C+INGLPIAV+ELKSP D N DIW AFNQLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFVFNEALVVSDGYNARIGALTANKERFSPWRAVKNEDDKPLLEWQLETLVRGFFDREM  240
             DLF+ NEALV+SDGYNARIG+LTA+ ERF PW+++ NEDDKPLLE QLE +V GFF+RE+
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   LLDYIRFFVLFENDGGAIIKKIAGYHQFHAVREAVKATIIAAQDPKGVAEKRAKYGDEVV  300
             LLDYIR+F+LFE+DG  +IKKIA+YHQFHAVREAV+ATI+A+      + K      ++ 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS------TGKFLPLRSNIK  295

Query  301   PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLLVVTDRNDLDGQLFQTFSNAH  360
             PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQ+EMNNPT++VVTDRNDLDGQL+ TF +A 
Sbjct  296   PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAK  355

Query  361   ELFKQTPVQANDRDELRQLLSERESGGIIFTTVQKFSPFEDEGAHPILNGRHNIVVISDE  420
             +L+KQ P QA++RD+LR++L+ RESGGIIFTTVQKF+P+++E AHP LN R+NIVVISDE
Sbjct  356   DLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDE  415

Query  421   AHRSQYGHKGRFIKVKNKDGNVTGNKLVFGFSQYMRDALPNASFIGFTGTPIALEDKDTR  480
             AHRSQYG  + +    +KDG        +G+++ MRDALPNASF+GFTGTP++ EDKDTR
Sbjct  416   AHRSQYGLSATL----DKDGAYK-----YGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  481   SVFGDYVSIYDIQDAVDDGATVAIYYESRLAKLDLNHAEIERLSdqvedivedeedASNR  540
             +VFGDYVSIYDIQDAVDDGATV+IYYESRLAKLDLNH E+E LS QV+D+VEDEE + ++
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEE-TDQK  525

Query  541   EKTKGGWSRLEKLVGAEPRIRQVAADLVGHFEARTESIDGKAMIVAMSREICVHLYDAIV  600
             EKTKG+WSRLEKLVG+EPRI+QVAADLV HF AR  +++GKAMIVAMSR+ICV+LY+A+V
Sbjct  526   EKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALV  585

Query  601   ELRPDWHDTDPSKGTIKIVMTGSASDRELLQPHIYNKQTRKRLEKRFKDNNDPLKLVIVR  660
              LRP+WH  D  KG IKI+MTGSASD+E LQPHIYNKQT+KRLE RFKD NDPLK+VIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  661   DMWLTGFDVPCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKQALK  720
             DMWLTGFD PCCHTMYIDKPM+GHNLMQAIARVNRVFK+KPGGLVVDYIGIANELKQALK
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  721   TYTDARGRGEPTLRAEEAFSVLLEKMDVVHGLF------HGFDYSEFVDQAYKLLVPASN  774
             TYTD++G+G+ T+ A +AF+VLLEK+DV+HG+F       GFDYS F +++  +L+ A+N
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAAN  765

Query  775   HILGLDDGKKRFLDAVLAINKAYSLCGTLDEAKELRAEiaffsaikaaiskfTYVDKKRT  834
              ILGLDDGKKR++D VLA+NKA SLC+TLDEAK L+ E+AF+SA+K AI K+T  DKK +
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  835   QEEMNSALKQILDNAVIAEGVVDVFQLAGLEKPDIGLLSDEFLEDVRQMPYRNLAVELLE  894
             Q E NS L +ILDNA++A GV DVF LAGL+KP+IGLLSDEFLE+VR+MP RNLAVELLE
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  895   KLLKDNIKSKTSNNVVQEKKYSDRLEETLRKYNNRAIETAQVIEELIQMAKEFQEALKRN  954
             KLL+D I ++T+NNVVQEKKYSDRL   L +YNNRAIETAQVIEELIQMAKEFQ A+ R+
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  955   DELGLQPDEVAFYDALANNESAVRELGDEILKKIAVEITEKLRKSTIVDWQVRDSVRAKL  1014
             D LGL+PDE+AFYDALA+NESAVRELGDE LKK+A+E+T +LRKST VDWQVR+SVRA+L
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  1015  RILVRRTLQRYKYPPDKAPEAIELVLKQAEALSNSWTN  1052
             RILVR+TL +YKYPPDKA +A+EL+LKQAE +SNSWT 
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

18) Psest_4044 in NC_019936


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1160 bits (4399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 691/1041 (67%), Positives = 870/1041 (84%), Gaps = 18/1041 (1%)

Query  14    WFQQVGWRFAHGPDIAPDSSAPERTDYRQVVlrerllaalarINPQIPAAALEQAVHALQ  73
             WF   GW   HGPDIAPD+  P R  +++V LR  +   L  +NP++PA+ +++ +  + 
Sbjct  14    WFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRIT  73

Query  74    TVSEPQMVVRNRSVHRLLLSGVAVQFEIGEQKKQDWVYFIDFAQPSNNDFLVVNQFTITG  133
                 P++VV N++ H+LLLSGV+V++  +++  +D   ++DF +P NN F VVNQ +I+G
Sbjct  74    RPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISG  133

Query  134   TRQPRRPDLIAFVNGLPLAVVELKNPANEQTDVWDAFNQLQTYKDEISDLFNSNAALVVS  193
             T+Q RRPD+I ++NGLP+AV+ELK+P++ ++D+W AFNQLQTYK+EISDLF  N ALV+S
Sbjct  134   TKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVIS  193

Query  194   DGWTARVGSLTANAERMLPWRTVLNEDDRPRLQMELETVVRGFFKPELFLDYVRHFVLFE  253
             DG  AR+GSLTA+ ER LPW+T+ NEDD+P L+ +LE VV GFF+ EL+LDY+R F+LFE
Sbjct  194   DGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFE  253

Query  254   QDGDSIVKKIAGYHQFHAVREAVRATVIASQHADKGVLAIHEERATYAKEVKPGSRKAGV  313
              DG  ++KKIA+YHQFHAVREAV AT++AS  ++K  L+++ +       +KPGS+KAGV
Sbjct  254   SDGKRLIKKIAAYHQFHAVREAVNATIVAS--TGK-FLPLRSN-------IKPGSKKAGV  303

Query  314   VWHTQGSGKSITMACYAGKLLQQSEMKNPTLVVVTDRNDLDGQLFATFCAASDLLKTTPQ  373
             VWHTQGSGKSI+M CYAGKLLQQ+EM+NPT+VVVTDRNDLDGQL++TFC A DLLK  PQ
Sbjct  304   VWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQ  363

Query  374   QAGDRDELREMLASREAGGIIFTTVQKFALQEDEEKHPLLSDRTNIVVISDEAHRSQYGS  433
             QA++RD+LREMLA+RE+GGIIFTTVQKFA  ++E+ HP L+ R NIVVISDEAHRSQYG 
Sbjct  364   QASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGL  423

Query  434   KGRLDTKTGKYVFGYAKHLHDALKNATFLGFTGTPIALEDRDTREVFGDYVSIYDIQDAV  493
              + LD K G Y +GYAKH++DAL NA+F+GFTGTP++ ED+DTR VFGDYVSIYDIQDAV
Sbjct  424   SATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAV  482

Query  494   DDGATVPIFYESRLAKLDVNQAEIDTLNeqveevvedeedivSREKTKGEWAALEKLVGS  553
             DDGATVPI+YESRLAKLD+N+ E+++L+ QV+++VEDEE    +EKTKG+W+ LEKLVGS
Sbjct  483   DDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETD-QKEKTKGDWSRLEKLVGS  541

Query  554   EPRLQQVARDLIEHFEARVSVADGKAMIVCMSRDICAHLYNAIVSLRPDWHSDDPEQGAI  613
             EPR++QVA DL+ HF AR +  +GKAMIV MSRDIC +LYNA+V+LRP+WHS+D E+G I
Sbjct  542   EPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEI  601

Query  614   KIVMTGSAADKALLQPHLYSKQVKKRLETRFKDVKDPLKLVIVRDMWLTGFDAPCCHTMY  673
             KI+MTGSA+DK  LQPH+Y+KQ KKRLE+RFKD++DPLK+VIVRDMWLTGFDAPCCHTMY
Sbjct  602   KIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMY  661

Query  674   IDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKAALKTYTDAKGKGDPTHNSA  733
             IDKPM+GHNLMQAIARVNRVFK+KPGGLVVDYIGIANELK ALKTYTD+KGKG+ T ++ 
Sbjct  662   IDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDAR  721

Query  734   EALAVLLEKMDIVRGMM------HGFDYSAFETQPLELLVPVSNHILGLKDGKTRFLDTM  787
             +A+AVLLEK+D+++GM        GFDYSAFE +P ++L+  +N ILGL DGK R++D +
Sbjct  722   DAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVV  781

Query  788   LAVTKAFSLCGTLDEAAPLRKEIAFFSAIKAAITKFTTVDKKRSDAEKNSALKQILDNAI  847
             LA+ KA SLC+TLDEA PL+KE+AF+SA+K AI K+TT DKK S++EKNS L +ILDNAI
Sbjct  782   LALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAI  841

Query  848   TSDGVDDIFALAGLDKPNIGLLSDEFLEDVRQMESRNLAVELLEKLLRDEVKARARNNVV  907
              + GVDD+FALAGLDKPNIGLLSDEFLE+VR+M  RNLAVELLEKLL D + AR+ NNVV
Sbjct  842   VATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVV  901

Query  908   QEKKYGDRLLETLRRYHNRAIETAQVIEELIQMAKEFKAALEREAALGLSHDEIAFYDAL  967
             QEKKY+DRL   L RY+NRAIETAQVIEELIQMAKEF+AA+ R+ ALGL+ DEIAFYDAL
Sbjct  902   QEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDAL  961

Query  968   ANNESAVRELGDETLKKIAAELTEKLRASTTIDWQVRESVRAKLRILVRRCLQRWKYPPD  1027
             A+NESAVRELGDETLKK+A E+T +LR STT+DWQVRESVRA+LRILVR+ L + KYPPD
Sbjct  962   AENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPD  1021

Query  1028  QQSDAVELVLKQAESLSNEWS  1048
             +  DAVEL+LKQAE +SN W+
Sbjct  1022  KALDAVELILKQAEVVSNSWT  1042

19) hsdR in NC_004757


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1131 bits (4287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 684/1054 (65%), Positives = 884/1054 (84%), Gaps = 18/1054 (1%)

Query  1     MITEQKLEDTAVGWFAELGWPHANGPEIAPDGDQPARTDYRQVVLREHLLAALARINPHI  60
             M++E+ LE+ ++GWFA  GW   +GP+IAPDG +P R  +++V LR  +   L  +NPH+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PaaaleqaahellTVGEPLLIARNRRVHRLLLSGIPVEFSVGDEKRSDLVNLIDFANPRN  120
             PA+ +++    +     P ++  N+  H+LLLSG+PVE+  +D    D   L+DF +P N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NDFLLVSQFTVRATRQPRRPDLVAFVNGLPLVVIELKNPANEQTDIWDALNQIQTYKEEI  180
             N F +V+Q ++ +T+Q RRPD++ ++NGLP+ VIELK+P++ ++DIW A+NQ+QTYK+EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   GDLFNTNVAVVVSDGFTARLGSLTANQERMQPWRAIANEDDRPLLEFELETLVRGFFEPA  240
             +DLF  N A+V+SDG+ AR+GSLTA++ER  PW++I+NEDD+PLLE +LE +V GFF+  
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   LFLDYVRHFVLFEQDADQIIKKIAGYHQFHAVREAVKATVIAASNPNKGLLEVQEPRATY  300
             L+LDY+R F+LFE D+ ++IKKIA+YHQFHAVREAV+AT++A++     +L ++      
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGK---FLPLRS-----  292

Query  301   GKEVQPGSRKAGVVWHTQGSGKSITMACYAGKLLQQPEMKNPTLVVVTDRNDLDGQLFAT  360
               +++PGS+KAGVVWHTQGSGKSI+M CYAGKLLQQ+EM+NPT+VVVTDRNDLDGQL++T
Sbjct  293   --NIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTT  350

Query  361   FCAAEDLLRQTPVQAGSREELREILASREAGGIIFTTVQKFALLDDEEQHPLLSDRSNIV  420
             FC A DLL+Q P QA++R++LRE+LA+RE+GGIIFTTVQKFA LD+E+ HP L+ R NIV
Sbjct  351   FCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIV  410

Query  421   VISDEAHRSQYGMKGRLDTKTGKYVFGYAKHMRDALANATFIGFTGTPIALEDKDTRAVF  480
             VISDEAHRSQYG+ + LD K G Y +GYAKHMRDAL+NA+F+GFTGTP++ EDKDTRAVF
Sbjct  411   VISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVF  469

Query  481   GDYVSIYDIQDAVDDGATVPIFYESRLAKLDVNQAEIDALNAQvdeviedeediTAREKT  540
             GDYVSIYDIQDAVDDGATVPI+YESRLAKLD+N+ E++AL++QVD+++EDEE    +EKT
Sbjct  470   GDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKT  528

Query  541   KSDWAALTKLVGAQPRLEQVAADLVQHFETRTATLEGKVMIVCMSRDICAELYNATVALR  600
             K+DW+ L KLVG++PR+ QVAADLV+HF +R AT++GK MIV MSRDIC  LYNA VALR
Sbjct  529   KGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALR  588

Query  601   PDWHDADPEKGAIKVVMTGSAADKPLLQPHLYSQQVKKLLEKRFKDPADPLKLVIVRDMW  660
             P+WH  D EKG IK++MTGSA+DK  LQPH+Y++Q KK LE RFKD  DPLK+VIVRDMW
Sbjct  589   PEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMW  648

Query  661   LTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFRNKPGGLVVDYIGIANELKAALKTYT  720
             LTGFDAPCCHTMY+DKPM+GHNLMQAIARVNRVF++KPGGLVVDYIGIANELK ALKTYT
Sbjct  649   LTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYT  708

Query  721   ESKGKGDPTHNaaealavlleklDIVRGLM------HGFDYRGFETDAMKLLVPVANHIL  774
             +SKGKG+ T +A +A+AVLLEKLD+++G+        GFDY +FE ++  +L+  AN IL
Sbjct  709   DSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYIL  768

Query  775   GLKDGKQRFLDAMLAVSKAFSLCSTLDETAALRTEiaffaavkaaivkfttvDRKRSDAD  834
             GL DGK+R++D +LA++KA SLCSTLDE+ +L+ E+AF++AVK AI+K+TT D+K S+++
Sbjct  769   GLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSE  828

Query  835   KNSALKQILDNAIVADGVADIFALAGLDKPNIGLLSEEFLEDVRQMKNRNLAVELLEKLL  894
             KNS L +ILDNAIVA GV D+FALAGLDKPNIGLLS+EFLE+VR+M +RNLAVELLEKLL
Sbjct  829   KNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLL  888

Query  895   SDEIKARARNNVVQEKKYGDRLLETLRKYHNRAVETAQIIEELIQMAKDFQAALEREAAL  954
             +D I AR+ NNVVQEKKY+DRL   L +Y+NRA+ETAQ+IEELIQMAK+FQAA+ R+ AL
Sbjct  889   NDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDAL  948

Query  955   GLNPDEIAFYDALANNESAVRELGDDTLKKIAVEITEKLRNSTTVDWQVRESVRAKLRIL  1014
             GLNPDEIAFYDALA+NESAVRELGD+TLKK+A+E+T +LR+STTVDWQVRESVRA+LRIL
Sbjct  949   GLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRIL  1008

Query  1015  VRRTLQKWKYPPDKQLEAVELVLQQAEVLSNSWS  1048
             VR+TL K KYPPDK L+AVEL+L+QAEV+SNSW+
Sbjct  1009  VRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

20) hsdR in NC_002663


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1120 bits (4247),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 661/1052 (63%), Positives = 864/1052 (83%), Gaps = 10/1052 (0%)

Query  1     MIDESTLEQAALDWFRETGWQTFNGKELFTEGRNPQRHQLSAVILEPIFRTQFALLNPHL  60
             M+ E  LEQ +L+WF   GW+ ++G ++  +G+NP R  +  V+L PIFR Q+  LNPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PVDCVEQVLAKLKQAESRDLVEANQAFHRLLTQGVPVTYKKGDDICFETAFLLDYAEPER  120
             P    +++++++ ++ES D+V +N+AFH+LL  GVPV YK++D +  +TA+L+D+ +PE 
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NAFWAVNQFEVRGL-HLRRPDIVCFINGLPIAILELKNPADEKNDVWNAFHQLQTYKNDL  179
             N F  VNQ  + G  +LRRPD++C+INGLPIA++ELK+P+D + D+W AF+QLQTYKN++
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  180   FDLLMFNGALAISDGVIAKVGSLTADEERFMPWRTVKNENDKPMVEWQLEILIRGFFRPD  239
              DL++ N AL ISDG  A++GSLTADEERF+PW+T+ NE+DKP++E QLE ++ GFF  +
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  240   LFTDYLHFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPLSDKVVREPRANYG  299
             L+ DY+++FILFE + K RLIKK A+YHQFHAVREAV AT++AS   ++K +   R+N  
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVAS---TGKFLP-LRSN--  293

Query  300   REVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF  359
               ++ GSKKAGVVWHTQGSGKSISMCCYAGKLLQQ+EM NPT++VVTDRNDLDGQL+  F
Sbjct  294   --IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTF  351

Query  360   SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRHNIVV  419
               AKDLLKQ+P +A +R+QLRE+LA+R+ GG+IFTTVQKFA  ++EQAHP LN R+NIVV
Sbjct  352   CQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVV  411

Query  420   ISDEAHRSQYGLKAKLNAKGSFQFGYAKHMRDALKNATFIGFTGTPIETEDKDTRAVFGD  479
             ISDEAHRSQYGL A L+  G++++GYAKHMRDAL NA+F+GFTGTP+ +EDKDTRAVFGD
Sbjct  412   ISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  480   YVSIYDIQDAVDDGATVPIYYESRLARLDINRAEIEELAQQFDeiveeeeqteaeRIKGE  539
             YVSIYDIQDAVDDGATVPIYYESRLA+LD+N+ E+E L+ Q D++VE+EE  + E+ KG+
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  540   FTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDTCVHLYNEIIALKPEW  599
              +RLEKLVG++PR++Q+A DL++HF  R+ + +GKAMIVAMSRD CV+LYN ++AL+PEW
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  600   HNDDPSKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRDMWLTG  659
             H++D  KG IKI+MTGSA+DK  LQPHIY+KQ K+ LE RFK+ +DPLK+VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  660   FDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHTYTNAK  719
             FDAPCCHTMY+DKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQAL TYT++K
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  720   GRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQAVSLLPKAANHILGLE  779
             G+G+ TID+++A+ VLLEK+D I GMFA    +  +D + FE ++  +L  AAN ILGL+
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  780   DGKKRFADLVLAATKAYALCGTLEQSKTYQRKLAFYAAVKAMMFKEQIGDGKLRKQRQDH  839
             DGKKR+ D+VLA  KA +LC+TL+++K  Q+ LAF +AVK  ++K    D K+ +  ++ 
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  840   VLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQIEHKNLAVELLEKLLQDN  899
             +L +ILDN+++A GVDD+F+L GL+KPNIGLLSDEFLE+VR++ ++NLAVELLEKLL+D 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  900   IKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKDFQEAFKRAEDLGLN  959
             I +R+  N+VQE+KY +RL A L +Y+NR+IETAQVIEELIQMAK+FQ A  R + LGLN
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  960   SDEIAFYDALANNESAVRELGDQILKAIALELVKQLRHSVTVDWQVRESvrarlrilvrr  1019
             +DEIAFYDALA+NESAVRELGD+ LK +A+E+  QLR S TVDWQVRESVRARLRILVR+
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1020  ilQKYKYPPDKADEAIDLVLEQAETLSYEWSE  1051
              L KYKYPPDKA +A++L+L QAE +S  W+ 
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

21) NT08PM_1867 in NC_017764


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1111 bits (4212),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 663/1050 (64%), Positives = 865/1050 (83%), Gaps = 10/1050 (0%)

Query  1     MIDENTLEQAALDWFSEIGWQTFHAKELFTEGSNPQRHQLSAVILEPIFRTKFAQLNPHL  60
             M+ E+ LEQ +L+WF+  GW+ +H+ ++  +G NP R  +  V+L PIFR ++  LNPHL
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PEDCVEQVLVKLKQAESRDLVEANQAFHRLLTQGVPVTYKKGDDICFETAFLLDYAEPKR  120
             P    ++++ ++ ++ES D+V +N+AFH+LL  GVPV YK++D +  +TA+L+D+ +P  
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NAFWAVNQFEVRGS-HLRRPDIICFINGLPIAILELKNPADEKTDVWDAFHQLQTYKNDL  179
             N F  VNQ  + G+ +LRRPD+IC+INGLPIA++ELK+P+D ++D+W AF+QLQTYKN++
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  180   FDLLMFNGALAISDGVVAKVGSLTADEERFMPWRTVNNENDKPTVEWQLDTLIRGFFRPD  239
              DL++ N AL ISDG  A++GSLTADEERF+PW+T++NE+DKP +E QL+ ++ GFF  +
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  240   LFTDYLRFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPSSDKMVQEPRANYG  299
             L+ DY+R+FILFE + K RLIKK A+YHQFHAVREAV AT++AS   ++K +   R+N  
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVAS---TGKFLP-LRSN--  293

Query  300   REVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF  359
               ++ GSKKAGVVWHTQGSGKSISMCCYAGKLLQQ+EM NPT++VVTDRNDLDGQL+  F
Sbjct  294   --IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTF  351

Query  360   SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRHNIVV  419
               AKDLLKQ+P +A +R+QLRE+LA+R+ GG+IFTTVQKFA  ++EQAHP LN R+NIVV
Sbjct  352   CQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVV  411

Query  420   ISDEAHRSQYGLKAKLNAKGAFQFGYAKHMRDALQNATFIGFTGTPIETEDKDTRAVFGD  479
             ISDEAHRSQYGL A L+  GA+++GYAKHMRDAL NA+F+GFTGTP+ +EDKDTRAVFGD
Sbjct  412   ISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  480   YVSIYDIQDAVDDGATVPIYYESRLARLDINRFEIEELAQQFDeiveeeeqteaeRIKGE  539
             YVSIYDIQDAVDDGATVPIYYESRLA+LD+N+ E+E L+ Q D++VE+EE  + E+ KG+
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  540   FTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDICVHLYNEIIALKPEW  599
              +RLEKLVG++PR++Q+A DL++HF  R+ + +GKAMIVAMSRDICV+LYN ++AL+PEW
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  600   HNDDPNKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRDMWLTG  659
             H++D +KG IKI+MTGSA+DK  LQPHIY+KQ K+ LE RFK+ +DPLK+VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  660   FDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHTYTNAK  719
             FDAPCCHTMY+DKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQAL TYT++K
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  720   GRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQALSLLPKAANHILGLE  779
             G+G+ TID+++A+ VLLEK+D I GMFA    +  +D + FE ++  +L  AAN ILGL+
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  780   DGKKRFADLVLAATKAYALCGTLEQSKTYQRKLafyaaakammfkaQIGDGKLRKQRQDH  839
             DGKKR+ D+VLA  KA +LC+TL+++K  Q+ LAF +A K  ++K    D K+ +  ++ 
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  840   VLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQMEHKNLAVELLEKLLQDN  899
             +L +ILDN+++A GVDD+F+L GL+KPNIGLLSDEFLE+VR+M ++NLAVELLEKLL+D 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  900   IKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKDFQEAFKRAEDLGLN  959
             I +R+  N+VQE+KY +RL A L +Y+NR+IETAQVIEELIQMAK+FQ A  R + LGLN
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  960   SDEIAFYDALANNESAVRELGDKILKAIALELVKQLRSSVTVDWQVRESvrarlrilvrr  1019
             +DEIAFYDALA+NESAVRELGD  LK +A+E+  QLR S TVDWQVRESVRARLRILVR+
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1020  ilQKYKYPPDKADEAIELVLEQAETLSEQW  1049
              L KYKYPPDKA +A+EL+L QAE +S+ W
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

22) PSM_A2849 in NC_014803


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1093 bits (4144),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 661/1061 (63%), Positives = 864/1061 (82%), Gaps = 25/1061 (2%)

Query  1     MITEDQLEQLCLNWFQGIGYQYICGYDIAPNEPAAERSDYRQVILHGRLLAQLKVINPHI  60
             M++ED+LEQL L WF G G + + G DIAP+   + R  +++V+L+  +  QL  +NPH+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PLATLEEVALNLGKAETPILIKNNKGFHQALLQGVKVEYKVNDESKTDNTRTGYVQLVDF  120
             P + ++E+   + ++E+P ++ +NK+FH+ LL GV VEYK +D    D +      L+DF
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTA-----LLMDF  115

Query  121   NDVNKNQFLVVNQFTLTGTKGNRRPDVMVFINGLPLALLELKNPIDNNADIWQAFQQIQT  180
             N+ ++N+F VVNQ +++GTK  RRPDV+ +INGLP+A++ELK+P D NADIW AF+Q+QT
Sbjct  116   NHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQT  175

Query  181   YKDELPDLFIFNEALVVSDGLTARVGSLTANKERFVPWRTVNSEDDKPLFEYQLETLVKG  240
             YK+E++DLFI NEALV+SDG  AR+GSLTA+ ERF+PW+T+++EDDKPL+E QLE +V+G
Sbjct  176   YKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNG  235

Query  241   FFQPALFLDYLRHFILFEEDDGKTIKKIAGYHQFHAVRAAVKATLIAEAKAQLAEPRANY  300
             FF+  L+LDY+R FILFE D+ + IKKIA+YHQFHAVR AV+AT++A + +++   R+N 
Sbjct  236   FFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVA-STGKFLPLRSN-  293

Query  301   VDKVQAGSGKAGVVWHTQGSGKSISMLCYAGKLMAQPQMNNPTIVVVTDRNDLDGQLYNT  360
                +++GS KAGVVWHTQGSGKSISM CYAGKL+ Q++MNNPTIVVVTDRNDLDGQLY T
Sbjct  294   ---IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTT  350

Query  361   FCMAADTLKQTPVQAGDRDELRDILTARQAGGIIFTTIQKFALLADEKSHPKLSERHNIV  420
             FC A D LKQ P QA++RD+LR++L+AR++GGIIFTT+QKFA L +E++HP L+ R+NIV
Sbjct  351   FCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIV  410

Query  421   VISDEAHRSQYGDKAKLNSKTGEYTFGYSKHLRDALPQATFIGFTGTPIDAADKDTRAVF  480
             VISDEAHRSQYG  A L+ K G Y +GY+KH+RDALP+A+F+GFTGTP+ + DKDTRAVF
Sbjct  411   VISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVF  469

Query  481   GDYVSVYDIQDAVDDGATVPIYYESRLAKLDINQADIESLNddvdeviedeediSSRENT  540
             GDYVS+YDIQDAVDDGATVPIYYESRLAKLD+N+ ++E+L+ +VD+++EDEE    +E+T
Sbjct  470   GDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET-DQKEKT  528

Query  541   KSKWAALEKLVGSEPRVNLVAKDLVAHFSERTNTMQGKGMIVAMSREICADLYNAIIAIK  600
             K+ W+ LEKLVGSEPR++ VA DLV HF+ R  TM+GK+MIVAMSR+IC  LYNA++A++
Sbjct  529   KGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALR  588

Query  601   PDWHDDDPAKGAIKIVMTGSASDKAKLQPHIYNKETKKLFEKRFKDVNDPLQLVIVRDMW  660
             P+WH +D  KG IKI+MTGSASDK  LQPHIYNK+TKK +E RFKD+NDPL++VIVRDMW
Sbjct  589   PEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMW  648

Query  661   LTGFDAPNCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALHTYT  720
             LTGFDAP CHTMYIDKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIANELK AL TYT
Sbjct  649   LTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYT  708

Query  721   NSNGRGQPTHDAHEAFAVLLEKMDIVRGML------HGCDYSDYETHALQLLPKVMNHIL  774
             +S+G+GQ T DA++AFAVLLEK+D+++GM+       G DYS +E ++ ++L    N IL
Sbjct  709   DSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYIL  768

Query  775   SLPNSGDGKLDGKKRFLDVMAALSKAYTLCGTLDEVAPLKTEIAFFAAVKSALGKFTTVD  834
             +L        DGKKR++DV+ AL+KA +LC+TLDE  PL+ E+AF++AVK A+ K+TT D
Sbjct  769   GLD-------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  835   KRRTDEDKNTALKHIIDNALIAEGVDDIFKLVGLDKPNIGLLSPEFMEDVANMKEKNLAV  894
             K+ ++ +KN+ L +I+DNA++A GVDD+F L GLDKPNIGLLS EF+E+V +M ++NLAV
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  895   DLLERLLRDEIKARMKTDVVSEKKYSDRILETLRKYHNRAIETAQVIEELIkmakdmaad  954
             +LLE+LL D I AR + +VV EKKYSDR+   L +Y+NRAIETAQVIEELI+MAK+  A 
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  955   aemaeNSGLNTDEIAFYRALIQNESAVRELGDDSLRSLAKEVTEKLRKSTTVDWQVRDSV  1014
                 +  GLN DEIAFY AL +NESAVRELGD++L+ LA EVT +LRKSTTVDWQVR+SV
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1015  RAKLRNLVRRALRKFKYPPDKADEAIELCLKQAEALSNSWT  1055
             RA+LR LVR++L K+KYPPDKA +A+EL LKQAE +SNSWT
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

23) Tola_1223 in NC_012691


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1080 bits (4096),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 672/1075 (63%), Positives = 856/1075 (80%), Gaps = 37/1075 (3%)

Query  1     MITEDQLEQQCLDWFKELGYQYQNGYDIAPDGDTPERDDYHQVILHQRLVDQLGTLNPNL  60
             M++ED+LEQ  L+WF   G +  +G DIAPDG  P R  +H+V+L+  +  QL TLNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PHDTRIELAKTVATTQTPILIKNNRAFHKYLIEGVPVEYSVIEDGQSVTKNTHARLIDFE  120
             P     E+   ++  ++P ++ +N+AFH  L+ GVPVEY     ++ V  +T A L+DF+
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK---RDDKVIHDT-ALLMDFN  116

Query  121   KVENNEFLVVNQFTITGTKGNRRPDVVVFINGLPMGVIELKNPADDHADIWNAYNQLQTY  180
               ENN F VVNQ +I+GTK  RRPDV+ +INGLP++VIELK+P+D +ADIW A+NQLQTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  181   KEEIADLFALNEALVISDGWTARVGSLTANKERFLPWKTIESEEDKPLLEFQLETMVRGF  240
             K+EI+DLF  NEALVISDG  AR+GSLTA+ ERFLPWKTI +E+DKPLLE QLE +V GF
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  241   FKPELLLDYIRYFVLFENDNDKIIKKIAGYHQFHavraavkatviaaaCSDGVRDPRANY  300
             F+ ELLLDYIRYF+LFE+D  ++IKKIA+YHQFHAVR AV         +  +  + +++
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAV---------NATIVASTGKF  287

Query  301   ---ANQVISGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQL  357
                 +++ +GSKKAGVVWHTQGSGKSISM CYA+KLLQQ+EMNNPT+VVVTDRNDLDGQL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  358   FNTFTMAQETLKQIPQQAEDRDSLRELLLNRQSGGIIFTTVQKFALLDNELEHPILSERS  417
             + TF  A++ LKQ PQQA +RD LRE+L  R+SGGIIFTTVQKFA LD E  HP L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  418   NIVVVSDEAHRSQYGNKARLTDVKDENGNVTGQRYVYGYSKYMRDALPNASFIGFTGTPI  477
             NIVV+SDEAHRSQYG    L+   D +G      Y YGY+K MRDALPNASF+GFTGTP+
Sbjct  408   NIVVISDEAHRSQYG----LSATLDKDGA-----YKYGYAKHMRDALPNASFMGFTGTPV  458

Query  478   SMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQEEIEALNDQVEDEIG  537
             S +DKDTR+VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLD+N+EE+EAL+ QV+D + 
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDD-LV  517

Query  538   EDEETSAREKIKSQWSALEKLVGAEPRIQQVAKDLVEHFTTRTETFPGKAMIVAMSREIC  597
             EDEET  +EK K++WS LEKLVG+EPRI+QVA DLV HF++R  T  GKAMIVAMSR+IC
Sbjct  518   EDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDIC  577

Query  598   VDLYNAIVAIKPDWHSDDPHKGAIKVVMTGSASDIDKMQPHIYDKKTKKLFEKRYKDTDD  657
             V LYNA+VA++P+WHS+D +KG IK++MTGSASD + +QPHIY+K+TKK +E R+KD +D
Sbjct  578   VRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLND  637

Query  658   ELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  717
              L++VIVRDMWLTGFDAPCCHTMYIDKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIA
Sbjct  638   PLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  697

Query  718   NELKNALKTYTNSQGKGKPTVDTAEAFAILMEKIDIVRGMFATPVDGAVFNYRPDFETKP  777
             NELK+ALKTYT+S+GKG+ T+D+ +AFA+L+EK+D+++GMFA    ++ F+Y + FE +P
Sbjct  698   NELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNP  756

Query  778   LQLLPGAVNHISGLSHKNNKGDDVRDGKRRFLDVMAALMKAFSLCNTMDEVNGYKNEIAF  837
              ++L +A N I GL           DGK+R++DV+ AL KA SLC+T+DE +  ++E+AF
Sbjct  757   QHVLLDAANYILGLD----------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAF  806

Query  838   YGAIKTAFLKHSTVDKKCSDELRNSALRQILNNAVVADGVDDIFKMVGLDKPNIGLLSEE  897
              +A+K A++K +T DKK S+  +NS L +IL+NA+VA GVDD+F + GLDKPNIGLLS+E
Sbjct  807   LSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDE  866

Query  898   FLEDVKNMKERNLAVELLEKLLRDEVKARMKNDVVQEKKYSERIMATLQKYHNRNIETAQ  957
             FLE+V++M +RNLAVELLEKLL D + AR +N+VVQEKKYS+R+ A L +Y+NR IETAQ
Sbjct  867   FLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQ  926

Query  958   VIEELIQWAKEMQADAEMTDKLNLSVDEIAFYRALVTNEASVRVLGDDSLRQLAIELTQQ  1017
             VIEELIQ AKE QA     D L L+ DEIAFY AL  NE++VR LGD++L++LAIE+T Q
Sbjct  927   VIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQ  986

Query  1018  LRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLEQAEVLADGW  1072
             LRKS+TVDWQ RESVRAR+R LVR+ L + KYPPD A +A+ L+L QAEV++++W
Sbjct  987   LRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

24) Shewana3_4244 in NC_008573


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1079 bits (4090),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 660/1082 (61%), Positives = 858/1082 (80%), Gaps = 41/1082 (3%)

Query  1     MITEDQLEQLCLDWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLERLEVLNPEL  60
             M++ED+LEQL L+WF++QG    +G DIAPDG +P R  +H+V L+  +  +LE LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PQESLDVVVNTVSTPDTPVLIKSNRGFHKYLIEGVPVEYTVYEDGETKTKHTHARLMDFT  120
             P   +D +++ ++ P++P ++ SN++FH  L+ GVPVEY      + K  H  A LMDF 
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK----RDDKVIHDTALLMDFN  116

Query  121   NPDNNEFLVVNQFTITGKKGNRRPDVVVFINGLPIAVIELKNPADEHADIWHAYNQLQTY  180
             +P+NN F VVNQ +I+G K  RRPDV+ +INGLPIAVIELK+P+D +ADIW A+NQLQTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  181   KDEIPDLFVFNESLVVSDGWTARVGSLTANKERFLPWKTVSGEDDKPLWDYQLETMVKGF  240
             K+EI+DLF+ NE+LV+SDG  AR+GSLTA+ ERFLPWKT+S EDDKPL + QLE +V+GF
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  241   FKPDLLLDYIRYFVLFETDNDTVIKKIAGYHQFHavraaveatvraKQADGELPLVAESM  300
             F+ +LLLDYIRYF+LFE+D   +IKKIA+YHQFHAVR            ++  + +  S 
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVR------------EAVNATIVAST  284

Query  301   GQYQVQATKGLDKIKPGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDR  360
             G++    ++    IKPGS KAGVVWHTQGSGKSISM CYA+KLLQQ+ MNNPTIVVVTDR
Sbjct  285   GKFLPLRSN----IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDR  340

Query  361   NDLDGQLFNTFGMAHETLKQVPSQADGRDKLRELLLSRQSGGIIFTTIQKFALLAEETEH  420
             NDLDGQL+ TF  A + LKQ P QA  RD+LRE+L +R+SGGIIFTT+QKFA L  E  H
Sbjct  341   NDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAH  400

Query  421   PVLSTRANIVVVSDEAHRSQYGNKSKLVDVKDANGNVISQKFVYGYSKYMRDALPNASFI  480
             P L+ R NIVV+SDEAHRSQYG  + L    D +G      + YGY+K MRDALPNASF+
Sbjct  401   PALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFM  451

Query  481   GFTGTPIAMDDKDTRGVFGEYVSIYDIQDAVDDGATVPIYYESRLAKLDINQAEIEQLND  540
             GFTGTP++ +DKDTR+VFG+YVSIYDIQDAVDDGATVPIYYESRLAKLD+N+ E+E L+ 
Sbjct  452   GFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSS  511

Query  541   QiedeigedeeTASREKIKSQWATLEKLVGAEPRIQQVAQDLVNHFTTRTETFPGKAMIV  600
             Q++D + ++E T  +EK K++W+ LEKLVG+EPRI+QVA DLV+HF++R  T  GKAMIV
Sbjct  512   QVDDLVEDEE-TDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIV  570

Query  601   AMSREICVDLYNAIVAIKPEWHNDDPAKGAIKIVMTGSASDKPKMQPHIHDKKTKKLFEA  660
             AMSR+ICV LYNA+VA++PEWH++D  KG IKI+MTGSASDK  +QPHI +K+TKK +EA
Sbjct  571   AMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEA  630

Query  661   RYKDTQDELQLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLV  720
             R+KD +D L++VIVRDMWLTGFDAPCCHTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLV
Sbjct  631   RFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLV  690

Query  721   VDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKVDIVRGMFATPVDGKVFNYR  780
             VDYIGIANELK+ALKTYT+S+GKGQ T+D+ +AF+VL+EK+D+++GMFA    +  F+Y 
Sbjct  691   VDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-  749

Query  781   PDFETDALRLLPGAVNHLSGLSHTDSKGKEVRDGKRRFLDVMAALGKAYSLCNTMDETRG  840
             + FE ++ ++L +A N + GL           DGK+R++DV+ AL KA SLC+T+DE++ 
Sbjct  750   SAFENNPQHVLLDAANYILGLD----------DGKKRYFDVVLALNKAWSLCSTLDEAKP  799

Query  841   YKNEIAFYSAIKAAFMKHSTVDKKRTDEERNTALKQILDNAVIADGVDDIFSMVGLDKPN  900
              ++E+AF SA+K A++K +T DKK ++ E+N+ L +ILDNA++A GVDD+F++ GLDKPN
Sbjct  800   LQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPN  859

Query  901   IGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKYSDRILTTLNKYHN  960
             IGLLS+EFLE+V++M ++NLAVELLEKLL D + AR +N+VVQEKKYSDR+ + L +Y+N
Sbjct  860   IGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNN  919

Query  961   RSIETAQVIEELIQWAKEMQEDAEMVDKLNLSVDEMAFYRALVENESSVRELGNDDLRNL  1020
             R+IETAQVIEELIQ AKE Q      D L L+ DE+AFY AL ENES+VRELG++ L++L
Sbjct  920   RAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKL  979

Query  1021  AIELTQQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDSAEEAIKLVLEQAEVLAD  1080
             AIE+T QLRKS+TVDWQ RESVRAR+R LVR+ L + KYPPD A +A+ L+L QAEV+++
Sbjct  980   AIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

Query  1081  GW  1082
             +W
Sbjct  1040  SW  1041

25) Sbal223_4470 in NC_011668


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1070 bits (4056),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 665/1082 (62%), Positives = 858/1082 (80%), Gaps = 41/1082 (3%)

Query  1     MITEDQLEQECIRWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLNQLAIINPEL  60
             M++ED+LEQ  + WF++QG    +G DIAPDG +P R  +H+V L+  + +QL  +NP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PIEALNDVVNTVSSPDTPILIKNNRVFHKFVIEGVPVEYTAVEDGESKTKHTHAQLMDFT  120
             P   ++++++ ++ P++P ++ +N+ FH +++ GVPVEY      + K  H  A LMDF 
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKR----DDKVIHDTALLMDFN  116

Query  121   TTDNNEFLIVNQFTITGTKGNRRPDVLVFINGLPISVIELKNPADEHADIWNAFNQLQTY  180
               +NN F +VNQ +I+GTK  RRPDV+ +INGLPI+VIELK+P+D +ADIW AFNQLQTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  181   KDEISDLFIFNEALVVSDGWTARVGSLTANKERFLPWKTVTGEDDKPLLEFQLETMVRGF  240
             K+EISDLFI NEALV+SDG  AR+GSLTA+ ERFLPWKT++ EDDKPLLE QLE +V GF
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  241   FKPDLLLDYIRYFILFEIDNDNIIKKIAGYHQFHAVRAAVEATVKAKQADSDLPMVAESI  300
             F+ +LLLDYIRYFILFE D   +IKKIA+YHQFHAVR AV+AT+              S 
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATI------------VAST  284

Query  301   GKYQVQATKGLDKIKAGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDR  360
             GK+    ++    IK+GS KAGVVWHTQGSGKSISM CYA+KLLQQ+ MNNPTIVVVTDR
Sbjct  285   GKFLPLRSN----IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDR  340

Query  361   NDLDGQLYNTFGMAQETLKQIPQQADGRDllrqlllnrqSGGIIFTTIQKFALLDDEIEH  420
             NDLDGQLY TF  A++ LKQ PQQA  RD LR++L  R+SGGIIFTT+QKFA LD+E  H
Sbjct  341   NDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAH  400

Query  421   PILSTRANIVVVSDEAHRSQYGNKSKLVEVKDANGNVTGSKYVFGYSKYMRDALPNASFI  480
             P L+ R NIVV+SDEAHRSQYG  + L    D +G      Y +GY+K MRDALPNASF+
Sbjct  401   PALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFM  451

Query  481   GFTGTPIAMDDKDTRGVFGEYVSVYDIQDAVDDGATVPIYYESRLAKLDINQAEIEELND  540
             GFTGTP++ +DKDTR+VFG+YVS+YDIQDAVDDGATVPIYYESRLAKLD+N+ E+E L+ 
Sbjct  452   GFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSS  511

Query  541   QVedeigeeeeTASREQIKSQWATLEKLVGAEPRIQQVALDLVNHFSTRSETFPGKAMIV  600
             QV+D + +EE T  +E+ K++W+ LEKLVG+EPRI+QVA DLV+HF++R+ T  GKAMIV
Sbjct  512   QVDDLVEDEE-TDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIV  570

Query  601   AMSREICVDLYNAIVAIKPEWHHPDPDKGAIKIVMTGSASDKEKMQPHIHDKKTKKLFEK  660
             AMSR+ICV LYNA+VA++PEWH  D +KG IKI+MTGSASDKE +QPHI +K+TKK +E 
Sbjct  571   AMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEA  630

Query  661   RYKDTQDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLV  720
             R+KD +D L++VIVRDMWLTGFDAPCCHTMYIDKPM+GHNLMQAIARVNRVFKDKPGGLV
Sbjct  631   RFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLV  690

Query  721   VDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKIDIVRGMFATPVDGAVFNYR  780
             VDYIGIANELK+ALKTYT+S+GKGQ T+D+ +AF+VL+EK+D+++GMFA    ++ F+Y 
Sbjct  691   VDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-  749

Query  781   PEFETNALRLLPGAVNHLSGLSHRNSKGEEVRDGKRRFLDVMAAMTKAFSLCNTMDETQG  840
             + FE N+ ++L +A N + GL           DGK+R++DV+ A+ KA SLC+T+DE++ 
Sbjct  750   SAFENNPQHVLLDAANYILGLD----------DGKKRYFDVVLALNKAWSLCSTLDEAKP  799

Query  841   YKNEIAFYSAIKTAFIKHSTVDKKRSDEERNTALKQILDNAIIADGVDDIFNMVGLDKPN  900
              ++E+AF SA+K A+IK +T DKK S+ E+N+ L +ILDNAI+A GVDD+F + GLDKPN
Sbjct  800   LQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPN  859

Query  901   IGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKYSERIMTTLQKYHN  960
             IGLLS+EFLE+V++M ++NLAVELLEKLL D + AR +N+VVQEKKYS+R+ + L +Y+N
Sbjct  860   IGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNN  919

Query  961   RSIETAQVIEELIKWakemaadaemaeGLNLSPDEIAFYRALVMNEASVRELGDDSLRGL  1020
             R+IETAQVIEELI+ AKE  A     ++L L+PDEIAFY AL  NE++VRELGD++L+ L
Sbjct  920   RAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKL  979

Query  1021  AIELTQQLRKSATVDWQKRDSVrarmrnlvrrllrrWKYPPDAAEAAIKLVLEQAEVLAD  1080
             AIE+T QLRKS+TVDWQ R+SVRAR+R LVR+ L + KYPPD A  A+ L+L QAEV+++
Sbjct  980   AIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

Query  1081  DW  1082
              W
Sbjct  1040  SW  1041

26) Rfer_0028 in NC_007908


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1068 bits (4050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 636/1051 (61%), Positives = 849/1051 (81%), Gaps = 16/1051 (1%)

Query  1     MVESDLEQLALTWFQDTGWDYRAGPDIAPDSDSPQRSDYRQMLLQGELREALSRLNPQVP  60
             + E DLEQL+L WF + GW+   GPDIAPD+ +P R  +++++L+  +R  L  LNP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    AAVLDDVAHQLSKPDHPSLIQSNRAFHEALvggvpvevevngerrgdrvvLVDFDTPERN  120
             A+++D++  ++++P+ P ++ SN+AFH+ L++GVPVE   ++    D  +L+DF+ PE N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   RFLVVNQFTVQGSKQPRRPDLVCFINGLPIAVIELKNLAAEQVGVQDAFHQLQTYKDELA  180
             RF VVNQ ++ G+KQ RRPD++C+INGLPIAVIELK+ +  + ++  AF+QLQTYK+E++
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFVTNEALVASDGLHARIGSLTASFERFLPWRTVKNENDRPLLEFELEKVVRGFFAPAL  240
             DLF+ NEALV SDG +ARIGSLTA  ERFLPW+T+ NE+D+PLLE +LE+VV GFF   L
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   LLDYLRYFVLFEMADGQVVKKIAAYHQFHavraavkaaviaatppatnaaQEQWASYAER  300
             LLDY+RYF+LFE  + +++KKIAAYHQFHAVR AV+A+++A+T         +  +    
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAST--------GKFLPLRSN  293

Query  301   VKPGSRMGGIVWHTQGSGKSISMVCFAAKLMQQPEMHNPTLVVVTDRNDLDGQLFQTFVG  360
             +KPGS+ +G+VWHTQGSGKSISM C+A+KL+QQ+EM+NPT+VVVTDRNDLDGQL+ TF  
Sbjct  294   IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ  353

Query  361   ARSLLREQPQQAGSRDELRALLAGRPSGGIIFTTVQKFTPDAGEEVFPLLSERNNIVVMA  420
             A+ LL+++PQQA++RD+LR +LA+R SGGIIFTTVQKF+P  GE+  P L+ R+NIVV++
Sbjct  354   AKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVIS  413

Query  421   DEAHRSQYGFRAVLDKKTGKYKYGFAKHLRDALKNATFVGFTGTPIEAGDHDTRAVFGEY  480
             DEAHRSQYG+ A LDK  G YKYG+AKH+RDAL NA+F+GFTGTP+ + D DTRAVFG+Y
Sbjct  414   DEAHRSQYGLSATLDK-DGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  472

Query  481   VSIYDIQDAVDDGATVPIFYESRLAKLNLNQVEMEKLNadvedvfedeedaalieaeKTR  540
             VSIYDIQDAVDDGATVPI+YESRLAKL+LN+ E+E L+++V+D+ EDEE      + K  
Sbjct  473   VSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKT-KGD  531

Query  541   WAALEKLVGAKERVDLVAADIVQHFEARNTAVAGKGMVVAMSREICARLYAAIIKLRPDW  600
             W+ LEKLVG+  R+  VAAD+V+HF ARN+++ GK+M+VAMSR+IC RLY A++ LRP+W
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  601   HSDDPAQGAIKVVMTGSAADATLLQPHIYNSAAKKLLERRFKDATDPLKLVIVRDMWLTG  660
             HS+D  +G IK++MTGSA+D   LQPHIYN  +KK LE RFKD  DPLK+VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  661   FDVPCLHTMYIDKPMRDHNLMQAIARVNRVFRDKEGGLVVDYIGIAAELRKALRTYTESK  720
             FD PC HTMYIDKPMR+HNLMQAIARVNRVF+DK GGLVVDYIGIA EL++AL+TYT+SK
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  721   GKGQPTLDATEALAKLQELMEVARHLL------HGFDFSAYRTQATTLLLPAANFVLGLD  774
             GKGQ T+DA +A+A L E ++V + ++       GFD+SA+  ++  +LL AAN++LGLD
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  775   DGKKRWADVVLAITKAFSLCGTLDDAALLREEIAFFQAIKAVIAKATTSDAKLSEEGRNA  834
             DGKKR  DVVLA+ KA SLC+TLD+A  L+ E+AF+ A+K  I K TT+D K+S+  +N+
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  835   VLKQILDNAVVAEGVEDIFKLAGLERPDIGILSDAFLEEVRQLPQRNFAVELLQKLLNDQ  894
             +L +ILDNA+VA GV+D+F LAGL++P+IG+LSD FLEEVR++PQRN+AVELL+KLLND 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  895   VKSRMRTNVVMERKFSERLQAALNRYLSRAVESAQVIEELIAMAKEFREAALRGNKLGLN  954
             + +R   NVV E+K+S+RL+A L RY +RA+E+AQVIEELI MAKEF+ A  R++ LGLN
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  955   TSELAFYDALTDNESAVREMDDEVLKKIAVEITEKLRNSTSVDWQKRESVRARLRNLVRI  1014
               E+AFYDAL++NESAVRE++DE LKK+A+E+T +LR+ST+VDWQ RESVRARLR LVR 
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1015  TLRRYKYPPDMQEEAIRLVLEQAERLSDAWT  1045
             TL +YKYPPD   +A+ L+L QAE +S++WT
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

27) VEJY3_11755 in NC_016613


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1050 bits (3979),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 669/1075 (63%), Positives = 859/1075 (80%), Gaps = 37/1075 (3%)

Query  1     MITEDQLEQQCLDWFKELGYQYQNGYDIAPDGNTPERENYQQVTLQARLVSALETLNPNV  60
             M++ED+LEQ  L+WF   G +  +G DIAPDG+ P R ++++V L++ +   LETLNP++
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PSDTLIEVAKTVATPQTPILIKNNKAFHQYLIEGVPVEYSVMEHEQWVTKHTHVRLIDFD  120
             P+  + E+   ++ P++P ++ +NKAFH+ L+ GVPVEY    +++ V  +T + L+DF+
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK---RDDKVIHDTAL-LMDFN  116

Query  121   DRENNEFLVVNQFTITGTKVNRRPDVIVFINGLPMAVIELKNPADDHADIWNAYNQIQTY  180
             + ENN F VVNQ +I+GTK  RRPDVI +INGLP+AVIELK+P+D +ADIW A+NQ+QTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  181   KEEIADLFVFNEALVISDGWTARVGSLTANKERFLPWKTIEDEDDKPLLEFQLETMVRGF  240
             K+EI+DLF+ NEALVISDG  AR+GSLTA+ ERFLPWKTI +EDDKPLLE QLE +V GF
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  241   FKPELLLDYIRYFVLFENDGDKIIKKIAGYHQFHavraavkatviaattSDQVTEPRANY  300
             F+ ELLLDYIRYF+LFE+DG ++IKKIA+YHQFHAVR AV         +  +  + +++
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAV---------NATIVASTGKF  287

Query  301   ---ANTVVPGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQL  357
                 + + PGSKKAGVVWHTQGSGKSISM CYA+KLLQQ+EMNNPT+VVVTDRNDLDGQL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  358   FNTFTMAQETLKQIPQQAEdrdslrdlllnrQSGGIIFTTVQKFALLDEEMAHPILSERS  417
             + TF  A++ LKQ PQQA +RD LR++L  R+SGGIIFTTVQKFA LD E AHP L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  418   NIVVVSDEAHRSQYGNKARLVDVKNEGGNVVDQRYVYGYSKYMRDALPNAAFIGFTGTPI  477
             NIVV+SDEAHRSQYG  A L    ++G+      Y YGY+K MRDALPNA+F+GFTGTP+
Sbjct  408   NIVVISDEAHRSQYGLSATL---DKDGA------YKYGYAKHMRDALPNASFMGFTGTPV  458

Query  478   SMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQDEIEALNDQVeeeig  537
             S +DKDTR+VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLD+N++E+EAL+ QV++ + 
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  538   edeetesreKIKSQWSALEKLVGAEPRIKQVAKDLVEHFTTRCETFPGKAMIVAMSREIC  597
             ++E  +   K K++WS LEKLVG+EPRIKQVA DLV HF++R  T  GKAMIVAMSR+IC
Sbjct  519   DEETDQKE-KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDIC  577

Query  598   VDLYDAIVAIKPEWHSDDPNKGAIKIVMTGSAADKAKMQPHIHDKKTKKLFEKRYKDTDD  657
             V LY+A+VA++PEWHS+D +KG IKI+MTGSA+DK  +QPHI +K+TKK +E R+KD +D
Sbjct  578   VRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLND  637

Query  658   ELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  717
              L++VIVRDMWLTGFDAPCCHTMYIDKPM+GHNLMQAIARVNRVFKDKPGGLVVDYIGIA
Sbjct  638   PLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  697

Query  718   NELKNALKTYTNSQGKGQPTVDTAEAFAVFMEKIDVIRGMFATPVDGDVLNYRPDFETKP  777
             NELK+ALKTYT+S+GKGQ T+D+ +AFAV++EK+DVI+GMFA    +  ++Y + FE +P
Sbjct  698   NELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNP  756

Query  778   LQLLPGAVNHISGLSHRNSKGEEVRDGKRRFLDVMAALMKAFSLCNTLDEVDGYKSEIAF  837
              ++L +A N I GL           DGK+R++DV+ AL KA SLC+TLDE    + E+AF
Sbjct  757   QHVLLDAANYILGLD----------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAF  806

Query  838   YGAIKTAFLKHSTVDKKRSDELRNSALRQILNNAIVADGVDDIFKTVGLDKPNIGLLSEE  897
              +A+K A++K +T DKK S+  +NS L +IL+NAIVA GVDD+F   GLDKPNIGLLS+E
Sbjct  807   LSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDE  866

Query  898   FLEDVKHMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKFSERIMSTLQKYHNRSIETAQ  957
             FLE+V++M ++NLAVELLEKLL D + AR +N+VVQEKK+S+R+ + L +Y+NR+IETAQ
Sbjct  867   FLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQ  926

Query  958   VIEELIQWAKEMQADAEMMDKLNLSTDEIAFYRALVTNEASVRTLGDDNLRQLAIELTHQ  1017
             VIEELIQ AKE QA     D L L+ DEIAFY AL  NE++VR LGD+ L++LAIE+T Q
Sbjct  927   VIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQ  986

Query  1018  LRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLDQAEVLADGW  1072
             LRKS+TVDWQ RESVRAR+R LVR+ L + KYPPD A +A+ L+L QAEV++++W
Sbjct  987   LRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

28) BN4_12249 in NC_020409


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1018 bits (3859),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 604/1053 (58%), Positives = 829/1053 (79%), Gaps = 22/1053 (2%)

Query  9     MINEDALEKLAISWFEDEGYTNVHGPDLNPEVDGSGARARLDDVLLLNPLRAAIERINPQ  68
             M++ED LE+L+++WF ++G   +HGPD+ P+   +  R  ++DV+L   +R  +E +NP+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNP-LRISFHDVFLRPIFRKQLETLNPH  59

Query  69    LPASTVDEVLHLVQKLSHPITVKANQEFHRLLREGVDVSYKRDGENVEDRAFLIDFHDVN  128
             LPAS  DE++  + +   P  V +N+ FH+LL  GV V YKRD+  ++D A+L+DF++ +
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPE  119

Query  129   ANTFWIVDQLTIRGSKGNRRPDLIVYLNGLPLAVIELKSPVKEDVGVDEAFHQLQTYKQE  188
              N F +V+Q++I G+K  RRPD+I Y+NGLP+AVIELKSP   + ++  AF+QLQTYK+E
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  189   LVDLAMFNEALVASDGIQARVGSLTANREWFLPWRAVKSEEDRPSFEYELKGIVKGFFDR  248
             + DL + NEALV SDG +AR+GSLTA+ E+FLPW+++ +E+D+P +E +L  +V+GFF+R
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  249   TLLLEYIRDFVLFEADDSSTIKKIASYHQFHGVRQavaaavkaaSE---HAPNELKG---  302
              LLL+YIR F+LFE+D+   IKKIA+YHQFH+VR+AV A++ A++       +++K    
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  303   RGGVIWHTQGSGKSISMCCLAGKLIRHPDLANPTLVVITDRNDLDGQLYETFCKAGDLLA  362
             ++GV+WHTQGSGKSISMCC AGKL++++++ NPT+VV+TDRNDLDGQLY TFC+A DLL 
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  363   DSPIQADDRGELRQILNEKQSGGIVFTTIQKFSLDKDETKFPVLSDRRNIIVIADECHRS  422
             + P QA +R++LR++L  ++SGGI+FTT+QKF+   +E   P L+ R NI+VI+DE HRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  423   QYGFKGKLDEKRNAFVAGYAQHMRDALPNATFTGFTGTPISQEDKNTQAVFGEYVSIYDI  482
             QYG+ + LD K  A+  GYA+HMRDALPNA+F GFTGTP+S EDK+T+AVFG+YVSIYDI
Sbjct  420   QYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  483   EQAQLDGATVPIFYESRLAKLDLNQDELPQIdekvdevtedeetSQAEKTKGKWAALAKL  542
             ++A  DGATVPI+YESRLAKLDLN++EL  +  +VD++ EDEET Q EKTKG W+ L KL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  543   VGAEPRIRQVAEDLVDHFEARLEVVDGKAMIVCMSRDICVAMFDALVKLRPQWAGNQLAD  602
             VG+EPRI+QVA DLV HF AR   ++GKAMIV MSRDICV +++ALV LRP+W ++++  
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  603   GTYDPSDGAIRIIMTASASDRRELQNHHYSKTQKKALEKRFKDLDDPLKIVIVRDMWLTG  662
             G        I+IIMT+SASD+ +LQ H Y+K  KK LE RFKDL+DPLKIVIVRDMWLTG
Sbjct  599   G-------EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  663   FDAPCAHTMYIDKPMKGHNLMQAIARVNRVFKGKQGGLVVDYIGIASELKNALHTYTRSG  722
             FDAPC HTMYIDKPM+GHNLMQAIARVNRVFK+K GGLVVDYIGIA+ELK+AL TYT S 
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  723   GRGGQPTIDVYEAFYVLKEKLQTARDIFHK------FDYSAYKTKAVELLPPAADFVVAT  776
             G+G Q TID  +AF VL EKL+  +++F K      FDYSA+  ++ ++L  AA+++++ 
Sbjct  712   GKG-QTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGL  770

Query  777   EERKKEFFDVVVAMTRAQSLCGTLDEAVAIRDEITFFQAVKIFIDKTTATKGKQTRQEKD  836
             ++ KK +FDVV+A+ +A SLC+TLDEA +++ E++F+ AVK+ I K T+T  K ++ EK+
Sbjct  771   DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKN  830

Query  837   AILNQLLARAVVPEGVDDIFALAGLDKPDISILSEEFLDDVRNMEHRNLAVELLEKLLRD  896
             ++L+++L  A+V+ GVDD+FALAGLDKP+I++LS+EFL++VR+M +RNLAVELLEKLL D
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  897   EISARSRRNTTQERKFSERLKESLLKYRNRAIETAQVIEELIQMAKDLNEALKRGDKLGL  956
              I AR+  N  QE+K+S+RL+  LL+Y NRAIETAQVIEELIQMAK+++ A+ R+D LGL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  957   NPSELAFYDALEENESAVRELGDDVLKKIAKELTEKLRKNVTVDWQHKDSVRAKMRNLVR  1016
             NP E+AFYDAL ENESAVRELGD+ LKK+A E+T +LRK+ TVDWQ ++SVRA++R LVR
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1017  RILKKYKYPPDAQKEAVAEVLRQAESLADDWSE  1049
             + L KYKYPPD   +AV  +L+QAE +++ W+ 
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

29) Desal_2732 in NC_012881


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1016 bits (3850),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 607/1053 (58%), Positives = 828/1053 (79%), Gaps = 22/1053 (2%)

Query  1     MINEAALEKLAISWFEDEGYENHHGPDLNPESDGSGERSSFDDVLLLSPLRSAVSCINPQ  60
             M++E  LE+L+++WF ++G E  HGPD+ P++  +  R SF+DV+L + +R  +  +NP+
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNP-LRISFHDVFLRPIFRKQLETLNPH  59

Query  61    LPSSAVDDVIHQLTTLSHPVSVKANQLFHRLLRNGLDVSYKRDGETIADKAFLIDFQEWQ  120
             LP+S  D++I ++T    P  V +N+ FH+LL +G+ V YKRD+  I D A+L+DF++ +
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPE  119

Query  121   NNIFWVVDQLTLQGTKDKRRPDLIVYVNGLPLAVIELKSPVDDSVGVDEAFNQLQTYRHE  180
             NN F VV+Q+++ GTK+ RRPD+I Y+NGLP+AVIELKSP D + ++  AFNQLQTY++E
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   LPDLAMFNEALIASDGIKARVGSLTASREWFLPWRYRKSEDDRPSFEYELKNVVEGFFDR  240
             ++DL + NEAL+ SDG +AR+GSLTA  E+FLPW+   +EDD+P +E +L NVV+GFF+R
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  241   KLFLEYVRDFVLFESDDTSTIKKIAGYHQFHGVRHAVEAIVQASSA------AASDEQRG  294
              L+L+Y+R F+LFESD+   IKKIA+YHQFH+VR+AV+A + AS++      +       
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   RGGVIWHTQGSGKSISMCCLAGKLIRHPELTNPTLVVVTDRNDLDGQLYETFCKAGDLLS  354
             ++GV+WHTQGSGKSISMCC AGKL++++E+ NPT+VVVTDRNDLDGQLY TFC+A DLL 
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  355   DTPVQVEDRTSLRKVLNERQSGGIIFTTIQKFSLSDGETVFPALSDRRNIIVIADECHRS  414
             + P Q  +R  LR +L  R+SGGIIFTT+QKF+  DGE   PAL+ R NI+VI+DE HRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  415   QYGFQSKLDEKKGAFTVGYAQHIRDALPNATFTGFTGTPVSLEDKDTQAVFGEYVSIYDI  474
             QYG+ + LD K GA+  GYA+H+RDALPNA+F GFTGTPVS EDKDT+AVFG+YVSIYDI
Sbjct  420   QYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  475   EQAQQDGATVPLFYESRLAKLDLNKEELPVIddtvdeltedeeSAQAERTKGRWAALAKL  534
             ++A +DGATVP++YESRLAKLDLN EEL  +   VD+L EDEE+ Q E+TKG W+ L KL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  535   VGSEPRLKQIAEDLVQHFEARLQVIDGKAMIVCMSREICVKMFDALTAIRPEWTGSKMSD  594
             VGSEPR+KQ+A DLV+HF AR   ++GKAMIV MSR+ICV++++AL A+RPEW +     
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSE----  594

Query  595   GTYDPADGGIRIIMTSNAADPESMQNHSYSKQQKKALEKRFKDPADPLKIVIIRDMWLTG  654
                D   G I+IIMT++A+D E +Q H Y+KQ KK LE RFKD  DPLKIVI+RDMWLTG
Sbjct  595   ---DVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  655   FDAPCAHTMYIDKPMKAHNLMQAIARVNRVFKGKPGGLVVDYIGIASELKNALHTYTNSG  714
             FDAPC HTMYIDKPM++HNLMQAIARVNRVFK+KPGGLVVDYIGIA+ELK+AL TYT+S 
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  715   GRGGRPTIDVTEALFILKEKLQVARDIF------HEFDYSEYATKAVELLPSAADYVVAN  768
             G+G + TID  +A+ +L EKL+V +++F        FDYS +  ++ ++L  AA+Y+++ 
Sbjct  712   GKG-QTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGL  770

Query  769   ENRKKEFFDVVVAMTRAQALCGTLDEAVAFRDEITFFQAVKMFISKATKPKKKLSQQEKE  828
             ++ KK +FDVV+A+ +A +LC+TLDEA +++ E++F+ AVK+ I K T   KK+SQ EK+
Sbjct  771   DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKN  830

Query  829   AVLNQLLAKAVVPEGVDDIFALAGLDKPDISILSDEFLEDVRHMEHRNLAVELLQKLIND  888
             ++L+++L +A+V+ GVDD+FALAGLDKP+I++LSDEFLE+VR+M +RNLAVELL+KL+ND
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  889   EVHSKSRRNETQRKKFSERLKASLTKYRNRAIETAQVIEEMIQLAKELNEALKRGEKLGL  948
              +H+++  N  Q KK+S+RL+A L +Y NRAIETAQVIEE+IQ+AKE++ A+ R++ LGL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  949   NSSEIAFYDALELNESAVRDLGDEVLKAIARELTQKLRNSVTVDWQHKESVRAKMRNLVR  1008
             N+ EIAFYDAL  NESAVR+LGDE LK +A E+T +LR+S TVDWQ +ESVRA++R LVR
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1009  RILKRYKYPPDAQKEAVEKVLSQAEELADEWSE  1041
             + L +YKYPPD   +AVE +L QAE +++ W+ 
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

30) A458_03965 in NC_018028


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1015 bits (3846),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 601/1050 (58%), Positives = 811/1050 (78%), Gaps = 26/1050 (2%)

Query  1     MTEDQLEQECLGWLGELGYTHLYGPDIAHDGGDPQRDSYRQVVLTERLRAAIAKLNPQVP  60
             ++ED+LEQ  LGW++  G   L GPDIA DG +P R S+++V L   +R  +  LNP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDALKQVVDLGVPAQLSANRLFHRLLVGGVPVQYQLDGETRGDFVRLIDWVNVRGN  120
              +  ++ + ++     P  + +N+ FH+LL++GVPV+Y+ D+    D   L+D  +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLWKAFDQLQTYKEQIP  180
                 +NQ +I G K+ RRPD+I ++NGLP+ ++ELK+P+DVNAD+W AF+QLQTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFHYNEILVISDGSEARMGSLSADAERFMNWRTIDGEQLDPLGQFNELETLLRGVMAPE  240
             DLF  NE LVISDG +AR+GSL+AD ERF+ W+TI  E+  PL + ++LE ++ G    E
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   MLLDYLRYFVLFEDDG-RLVKKIAGYHQFHAVRAAIRQVVTASRP----------GGTHK  289
             +LLDY+RYF+LFE DG RL+KKIA+YHQFHAVR A+   + AS             G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQAAAMENPTIVVITDRNDLDGQLFGVFSLSHDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q A M+NPTIVV+TDRNDLDGQL+  F  + DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQAETRGDLREKLGNRPSGGIVFATIQKFMPGEDEDSFPVLSTRSNIVVIADEAHRTQ  409
             +P QA  R++LRE L+ R SGGI+F+T+QKF P ++E++ P L+ R NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFHASLKAPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDY  469
             YG+ A+L        +  + Y+ GYA+H+RDALPNA+F++FTGTPVSSED+DTRAVFGDY
Sbjct  421   YGLSATL--------DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  472

Query  470   IHVYDMQQAKDDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRW  529
             + +YD+Q+A DDGATV+IYYESRLAKL L++ EL  +  +VD+L EDEE DQ+ + K+ W
Sbjct  473   VSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDW  532

Query  530   AALEKVVGAEPRIKSVAADLVAHFEERNQAQSGKAMIVAMSREICVHLYNEIVALRPEWH  589
             + LEK+VG+EPRIK VAADLV HF  RN + +GKAMIVAMSR+ICV+LYN +VALRPEWH
Sbjct  533   SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  590   DEDPEQGAIKVVMTGSASDKALLRPHIYPSQVKKRLEKRFKDPKDPLQLVIVRDMWLTGF  649
              ED E+G IK++MTGSASDK  L+PHIY  Q KKRLE RFKD +DPL++VIVRDMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  650   DAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKG  709
             DAPC HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGIANELK ALK YT SKG
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKG  712

Query  710   RGRPTVDAHEAYSVLEEKLDVLRSLL------HGFDYSDYLTGGHKLLAGAANHVLGLED  763
             +G+ T+DA++A++VL EKLDV+++++       GFDYS +    + +L +AAN +LGL+D
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDD  772

Query  764   GKKRFADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKVLLTKREISAKKKSDEERELA  823
             GKKR+ D  LA++KA +LC TLDEAK+++ E+AFL A+KV + K   + KK S+ E++  
Sbjct  773   GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL  832

Query  824   IRQIIGNAVVSGEVVDVFEAVGLDKPNIGLLDDEFLAEVRNLPERNLAVELLERLLEGEI  883
             + +I++NA+V+  V DVF   GLDKPNIGLL DEFL EVR++P+RNLAVELLE+LL++ I
Sbjct  833   LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGI  892

Query  884   KSKFASNLAQEKKFSELLDNVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDELGLND  943
              ++  +N+ QEKK+S+ L  V+ RY+NR+IETAQVIEELI+MAK F AA  R+D LGLN 
Sbjct  893   HARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNP  952

Query  944   DELAFYDALANNEASVRELGDEILAKIAHELTASLRQNVTVDWSNRDSVRAKLRLMVKRI  1003
             DE+AFYDALA+NE++VRELGDE L K+A E+TA LR++ TVDW  R+SVRA+LR++V++ 
Sbjct  953   DEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  1004  LRKYKYPPDQQEGAAQLILEQAEMLCAGWA  1033
             L KYKYPPD+  +A +LIL QAE++  +W+
Sbjct  1013  LLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

31) CAP2UW1_1871 in NC_013194


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1012 bits (3835),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 595/1068 (56%), Positives = 810/1068 (76%), Gaps = 45/1068 (4%)

Query  1     MTEDHLEQEALGWLTEVGYDTLYGPDIAPDGANPERAGYQQVLLPFRLREAIHRLNPSIP  60
             ++ED+LEQ +LGW++  G + L GPDIAPDG NP R ++++V+L   +R  ++ LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDALKQVLDLGIPALLSANRHFHKLLVGGVPVQYQKDGETRGDLVRLIDWTNPAKN  120
              +  ++ + ++     P ++ +N+ FH LL++GVPV+Y++D+    D   L+D  +P +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   KWLAINQHSIKGPHHTRRPDIILFINGLPLVLIELKNPADGNADIWRAYDQLQTYKEQIP  180
             +   +NQ +I G  + RRPD+I +INGLP+ +IELK+P+D NADIW A++QLQTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DAFQYNEVLIISDGSEARFGSLSANAERFMQWRTIDGVALDPLGEFNELETLVRGLLAPA  240
             D F  NE L+ISDG +AR+GSL+A+ ERF+ W+TI      PL E ++LE +V G++   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   ILLDYLRFFVLFEDDGA-LVKKIAGYHQFHAVRAAIDQVVTASRP----------GGTHK  289
             +LLDY+R+F+LFE DG  L+KKIA+YHQFHAVR A++  + AS             G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQEAVMENPTIVVITDRNDLDGQLFGVFSLAQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q+A M+NPTIVV+TDRNDLDGQL+  F  A+DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   EPVQANTRQDLRAKLGNRPSGGIVFATIQKFMPGEDEDAYPTLSDRHNIVVIADEAHRTQ  409
             EP QA+ R++LR  L+ R SGGI+F+T+QKF P ++E+A P+L+ R+NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEARLKTVRAPRNTAGDGVNDANARLAAEPAASYLSRYQVGYAQHLRDALPNATFVAF  469
             YG+ A L                       +  ++Y  +Y  GYA+H+RDALPNA+F++F
Sbjct  421   YGLSATL-----------------------DKDGAY--KY--GYAKHMRDALPNASFMGF  453

Query  470   TGTPVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYFESRLAKLSLNEAELPHIddev  529
             TGTPVSSED+DTRAVFGDY+ +YD+Q+A +DGATV+IY+ESRLAKL LN+ EL  +  +V
Sbjct  454   TGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQV  513

Query  530   delaedeeeGQQARLKSKWAALEKVVGAEPRIASVAADLVAHFEERSQAQTGKAMVVAMS  589
             D+L EDEE +Q+ + K+ W+ LEK+VG+EPRI  VAADLV HF  R+ +  GKAM+VAMS
Sbjct  514   DDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMS  573

Query  590   REICVHLYNEITRLRPEWHDADPEKGAIKIVMTGSASDKALLRPHIYSAQVKKRLEKRFK  649
             R+ICV+LYN +  LRPEWH  D EKG IKI+MTGSASDK  L+PHIY+ Q KKRLE RFK
Sbjct  574   RDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFK  633

Query  650   DPADPLRIVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFKDKQGGLVVDY  709
             D  DPL+IVIVRDMWLTGFDAPC HTMYIDKPM+GHNLMQAIARVNRVFKDK GGLVVDY
Sbjct  634   DLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDY  693

Query  710   IGIANELKSALKEYTASQGRGRPTVDVAEAYAVLEEKLDILRGML------HGFDYSDFL  763
             IGIANELK ALK YT S+G+G+ T+D  +A+AVL EKLD+++GM+       GFDYS F 
Sbjct  694   IGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFE  753

Query  764   TTGHRRLAGAANHVLGQKDGKKRFADTALAMSRAFTLCCTLDAAKEVREEVAFMQAVKVI  823
                ++ L +AAN +LG  DGKKR+ D  LA+++A +LC TLD AK ++ E+AF+ AVKV 
Sbjct  754   NNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVA  813

Query  824   LTKRDLSQQRRTDEQRELAIRQIINSAIVSEEVVDVFDAVGLDKPNIGILDDAFLAEVRN  883
             + K   ++++ ++ +++  + +I+++AIV+  V DVF   GLDKPNIG+L D FL EVR+
Sbjct  814   IIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVRE  873

Query  884   LPERNLAVELLERLLEGEIKSRFAGNVVQAKKFSELLTNVIKRYQNRAIETAQVIEELIE  943
             +P+RNLAVELLE+LL++ I +R   NVVQ KK+S+ L  V+ RY+NRAIETAQVIEELI+
Sbjct  874   MPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQ  933

Query  944   MAKKFRAAANRGEALGLTEDEVRFYDALADNESAVRELSDETLKKIAHELTESLRQNITV  1003
             MAK F+AA  R++ALGL  DE+ FYDALA+NESAVREL+DETLKK+A E+T  LR++ TV
Sbjct  934   MAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTV  993

Query  1004  DWSARDSIRARLRLMVKRILRKYKYPPDQQEAAIELVLKQAEVLGEEW  1051
             DW  R+S+RARLR++V++ L KYKYPPD+   A+EL+LKQAEV+++ W
Sbjct  994   DWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

32) R2APBS1_3887 in NC_020541


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1012 bits (3836),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 604/1081 (56%), Positives = 823/1081 (77%), Gaps = 56/1081 (5%)

Query  4     ILLEDHLEQAALQWLAGLGWEVAHGPDISPPDAHTPGSERDSYRQVVLEHRLRDAIRRLN  63
             +L ED+LEQ +L W+AG GWEV HGPDI+P D+  P   R S+++V L   +R  +  LN
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAP-DGKNP--LRISFHDVFLRPIFRKQLETLN  57

Query  64    PRIPATAQDEALRIVLNPNIPGPLQANRQLHRWLTEGVPVQFQQGNETrgdlvrlvdfdd  123
             P++PA+  DE +  +  P+ P+ + +N+ +H+ L  GVPV++++++    D   L+DF++
Sbjct  58    PHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNH  117

Query  124   vrgNDWVAVNQFSIQGPKRTRRPDLLLFLNGLPIVLLELKNPGDENADIWSAFNQVQAYR  183
                N    VNQ +I G K+ RRPD++ ++NGLPI ++ELK+P+D NADIW+AFNQ+Q+Y+
Sbjct  118   PENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYK  177

Query  184   EDIPDLFIYNTLVVISDGIRARMGSLSAERERYMAWRTIDGAQTDPLGEMRELETLVHGA  243
             ++I+DLFI N  +VISDG  AR+GSL+A+ ER+++W+TI   +  PL E ++LE +V+G 
Sbjct  178   NEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGF  236

Query  244   FDRALLLAYLRNFILFEDDGA-LVKKVAGYHQFHAVRAVVESVLAASKP----------G  292
             F+R LLL Y+R FILFE DG  L+KK+A+YHQFHAVR  V++ + AS             
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  293   GSRKGGVVWHTQGAGKSIEMTCLAGTLMQHPAMGNPTIVVVTDRNDLDNQLFGVFAGVAD  352
             GS+K+GVVWHTQG+GKSI M C AG L+Q++ M NPTIVVVTDRNDLD QL+  F    D
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  353   LLRETPVQADTRPRLRELLGNRPSGGIIFTTIQKFTPGEDEDVFPVLSERQNIVVICDEA  412
             LL++ P QA  R +LRE+L+ R SGGIIFTT+QKF+P ++E+  P L+ R+NIVVI DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  413   HRTQYGFEAKLTGDLakakpakmaadaagsvamaalmSHEASASYASSVRYGYAQHLRDA  472
             HR+QYG+ A L                            +  ++Y    +YGYA+H+RDA
Sbjct  417   HRSQYGLSATL----------------------------DKDGAY----KYGYAKHMRDA  444

Query  473   LPNATFVAFTGTPVSLTDRDTRAVFGDYVHVYDIEQAVKDGATVPIYYESRLAKLELSDG  532
             LPNA+F++FTGTPVS  D+DTRAVFGDYV +YDI++AV DGATVPIYYESRLAKL+L++ 
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  533   DIDALDEEVDELNEGAIDDPSHAARIR-RWAALEKVVGAAPRIQKVASDIVEHFENRLAA  591
             +++AL  +VD+L E+  ++  +  + +  W+ LEK+VG+ PRI++VA+D+V HF  R A+
Sbjct  505   ELEALSSQVDDLVED--EETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  592   MDGKAMIVAMSREICVHLYDAIVALRPEWHAADPEKGVIKIVMTGSAADKPMLKPHVYPK  651
             M+GKAMIVAMSR+ICV+LY+A+VALRPEWH+ D EKG IKI+MTGSA+DK  L+PH+Y K
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  652   ETRKRLERRYKDSADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVF  711
             +T+KRLE R+KD  DP+K+VIVRDMWLTGFDAPC HTMYIDKPMRGHNLMQAIARVNRVF
Sbjct  623   QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF  682

Query  712   KDKPGGLVVDYIGIANELKQALADYTQAKGRGSPTIDAEEALEVLVERMELLHGML----  767
             KDKPGGLVVDYIGIANELKQAL  YT++KG+G  TIDA +A+ VL+E+++++HGM+    
Sbjct  683   KDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTT  742

Query  768   --HGYDYAAFRAQAWALLPGAANHVLGLDDGKQRFADQVLAATKAFALCCTLDAALAYRD  825
                G+DY+AF  ++  +L +AAN +LGLDDGK+R+ D VLA  KA +LC TLD A + + 
Sbjct  743   TDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQK  802

Query  826   ELAFLQAIKSAITKHATTDKKLSDEQKEHALRQIISRAVVSDQVIDIFAAAGLKRPDIGV  885
             ELAFL A+K AI K +TTDKK+S+ +K+  L +I+  A+V+  V D+FA AGL +P+IG+
Sbjct  803   ELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGL  862

Query  886   LSEEFLQDMRHMKERNLAVELLDRLLKGEIKSRFKTNVVQSAKFSELLQASLTRYRNRAI  945
             LS+EFL+++R+M +RNLAVELL++LL++ I +R + NVVQ  K+S+ L+A L RY NRAI
Sbjct  863   LSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAI  922

Query  946   ETAQVIEELIAMAKKFQQAAEHGDALGLNRDEVAFYDALANNESAVRELGDETLRKIAVE  1005
             ETAQVIEELI MAK FQ A  ++DALGLN DE+AFYDALA+NESAVRELGDETL+K+A+E
Sbjct  923   ETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIE  982

Query  1006  LTQKLRNSVTVDWAVRDSVRAKLRVMVKTLLRRYKYPPDKQDEAVEIVLRQAETLTNTWA  1065
             +T +LR+S TVDW VR+SVRA+LR++V+  L +YKYPPDK  +AVE++L+QAE ++N+W+
Sbjct  983   VTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

Query  1066  G  1066
             +
Sbjct  1043  A  1043

33) Metme_1967 in NC_015572


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1008 bits (3820),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 588/1060 (56%), Positives = 814/1060 (77%), Gaps = 37/1060 (3%)

Query  1     MTEDQLEQEALGWLAEVGYSTLYGPDLAPDGDNPERDNYLQVVLVERLRSAIARLNPSIP  60
             ++ED+LEQ +LGW+A  G   L GPD+APDG NP R ++ +V L   +R  +  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDALQQILNLEVPGLLAANRHFHRLLVNGVPVEYQKDGDTRGDRVRLIEFAEPSSN  120
              +  ++ + +I   E P+++ +N+ FH+LL++GVPVEY++D+    D   L++F +P +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAINQFAIKGPKHSRRPDIILFINGLPLVLLELKNPADENADIWKAFGQIQTYKEQIP  180
                 +NQ AI G K+ RRPD+I +INGLP+ ++ELK+P+D NADIW AF Q+QTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFQYNEVLVVSDGSEARLGSLSSDAERFMQWRTIDGITLDPLGQFNELETLIHGLLNPA  240
             D+F  NE LV+SDG +AR+GSL++D ERF+ W+TI      PL + ++LE +++G++N  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   TLLDYLRFFVLFEDDGG-LVKKVAGYHQYHAVRAAIQQVVTAS-------RPD---GNHK  289
              LLDY+R+F+LFE DG  L+KK+A+YHQ+HAVR A++  + AS       R++   G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQETAMENPTIVVITDRNDLDGQLFGVFSLGQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  ++DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQAETRQDLRAKLDNRPSGGIVFATIQKFMPGADEDSFPVLSDRSNIVVIADEAHRTQ  409
             +P QA  R++LR  L  R SGGI+F+T+QKF P  +E++ P L+ R NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEAKLKTVKTQQTAANEGRVDMAAEYRGMYQVGYAQHLRDALPNATFVAFTGTPVSLE  469
             YG+ A L                      G Y+ GYA+H+RDALPNA+F++FTGTPVS E
Sbjct  421   YGLSATLDK-------------------DGAYKYGYAKHMRDALPNASFMGFTGTPVSSE  461

Query  470   DRDTRAVFGEYIHVYDMQQAKEDGATVAIYFESRLAKLALKPEQLPQIddevdelaedee  529
             D+DTRAVFG+Y+ +YD+Q+A +DGATV+IY+ESRLAKL L+ E+L  +  +VD+L EDEE
Sbjct  462   DKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEE  521

Query  530   edQQAKLKSRWAALEKVVGAEPRIASVAADLVAHFEERNKAQDGKAMVVAMSREICVHLY  589
              DQ+ K K+ W+ LEK+VG+EPRI  VAADLV HF  RN + +GKAM+VAMSR+ICV+LY
Sbjct  522   TDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLY  581

Query  590   NEIIKLRPDWHSDDPEQGAIKIVMTGSASDKALLRPHIYSKQQKKRLEKRFKDPADPLRL  649
             N ++ LRP+WHS+D E+G IKI+MTGSASDK  L+PHIY+KQ KKRLE RFKD  DPL++
Sbjct  582   NALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKI  641

Query  650   VIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELK  709
             VIVRDMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGIANELK
Sbjct  642   VIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELK  701

Query  710   SALKDYTASQGRGRPTVDAAEAYAVLEEKLDILRGIL------HGYDYSDFLTTGHKRLA  763
              ALK YT S+G+G+ T+DA +A+AVL EKLD+++G++       G+DYS F    +  L 
Sbjct  702   QALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLL  761

Query  764   GAANHVLGQKDGKKRFADTSLAMSKAFTLCCTLDEAKAVREEMAFFQAVKVILTKPDISR  823
             +AAN +LG  DGKKR+ D  LA++KA +LC TLDEAK+++ E+AF+ AVKV + K   + 
Sbjct  762   DAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  824   KKRSDEERDLAIRQIINSAVVSEDVVDIFEAVGLDKPNIGILDEAFLADVRNLPERNLAV  883
             KK S+ E++  + +I+++A+V+ +V D+F   GLDKPNIG+L + FL +VR++P+RNLAV
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  884   ELLERLLEGEIKSRFAGNVVQEKKFSELLTNVIKRYQNRAIETAQVIEELIQMAKKFREA  943
             ELLE+LL++ I +R   NVVQEKK+S+ L  V+ RY+NRAIETAQVIEELIQMAK F+ A
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  944   AGRGESLGLSEDEIRFYDALADNESAVRELSDDTLKLIAHELTENLRQNITVDWSQRESV  1003
              +R+++LGL+ DEI FYDALA+NESAVREL+D+TLK +A E+T +LR++ TVDW  RESV
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1004  RAKLRLMVKRILRKYKYPPDQQEAAIELVLQQAQALGDAW  1043
             RA+LR++V++ L KYKYPPD+   A+EL+L+QA+ ++++W
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

34) Bxe_A0222 in NC_007951


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1007 bits (3816),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 594/1046 (57%), Positives = 815/1046 (78%), Gaps = 23/1046 (2%)

Query  1     MTEDQLEQETLDWLADVGYRCLFGPDLAPDGANPERADYRHVLLVERLRGAVARLNPGIP  60
             ++ED+LEQ +L+W+A+ G   L GPD+APDG NP R  +++V+L   +R  +  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    PATREDALQQVRDLGIPALLSANRHFHQLLVGGVPVEYQKDGELRGDFVRLVDWADPAAN  120
             ++  ++ + ++     P ++ +N+ FH+LL++GVPVEY++D+ +  D   L+D  +P  N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAVNQFAIKGPQHARRPDVMLFVNGVPLVLLELKNPADQNADIWKAYDQIQTYKAQIP  180
                 VNQ AI G ++ RRPDV+ ++NG+P+ ++ELK+P+D NADIW A++Q+QTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFQYNEVLVISDGSQARMGSLSADAERFMQWRTIDGATLDPLGQFNELETLIRGVLAPT  240
             D+F  NE LVISDG +AR+GSL+AD ERF+ W+TI      PL + ++LE ++ G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YLLDYLRFFVLFEDDGT-LVKKIAGYHQFHAVCAAIQQVVTAS-----------RPGASH  288
              LLDY+R+F+LFE DG  L+KKIA+YHQFHAV  A++  + AS           +PG S 
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG-SK  299

Query  289   KGGVVWHTQGSGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVFSLAQDLLR  348
             K+GVVWHTQGSGKSI+M C+A++++Q+A M+NPTIVV+TDRNDLDGQL+  F  A+DLL+
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  349   EQPVQAGTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTYPVLSDRNNIVVIADEAHRT  408
             ++P QA+ R++LR  LA R SGGI+F+T+QKF P ++E++ P L+ R+NIVVI+DEAHR+
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  409   QYGFEAQLRGKPGQEKYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGEYIHVY  468
             QYG+ A L +K G  KY  GYA+H+RDALPNA+F++FTGTPVSSED+DTRAVFG+Y+ +Y
Sbjct  420   QYGLSATL-DKDGAYKY--GYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  469   DMQQAKEDGATVAIYFESRLAKLSLKAEDLPHIdaevdelaedeeeSQQAKLKSRWAALE  528
             D+Q+A +DGATV+IY+ESRLAKL L+ E+L  + ++VD+L EDEE  Q+ K K+ W+ LE
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  529   KVVGAEPRVAAVAADLVAHFEERNKAQNGKAMVVAMSREICVHLYDEIIKLRPDWHDPDP  588
             K+VG+EPR+  VAADLV HF  RN + NGKAM+VAMSR+ICV+LY+ ++ LRP+WH  D 
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  589   EKGAVKIVMTGSASDKALLRPHIYSGQVKKRLEKRFKDPADPLRMVIVRDMWLTGFDAPC  648
             EKG +KI+MTGSASDK  L+PHIY+ Q KKRLE RFKD  DPL++VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  649   VHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSALKEYTASNGRGRP  708
              HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGIANELK ALK YT S+G+G+ 
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQT  716

Query  709   TVDAAEAYSVLEEKLDVLRGML------HGYDYSGFLTGGHKCLAGAANHVLGLKDGKKR  762
             T+DA +A++VL EKLDV++GM+       G+DYS+F    +  L +AAN +LGL DGKKR
Sbjct  717   TIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKR  776

Query  763   FADTALAMSKAFTLCCTLDEAKLVREEVAFMQAVKVILTKRELSDKKKTNEERELAIRQI  822
             + D  LA++KA +LC TLDEAK ++ E+AF+ AVKV + K   +DKK ++ E++  + +I
Sbjct  777   YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRI  836

Query  823   ISSAVVSEKVVDVFEAVGLEKPNIGILDEAFLAEVRNLPERNLAVELLERLLEGEIKSRF  882
             + +A+V+  V DVF   GL+KPNIG+L + FL EVR++P+RNLAVELLE+LL++ I +R 
Sbjct  837   LDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHART  896

Query  883   ASNVVQEKKFSEMLANVVTRYQNRAIETAQVIEELIDMAKKFRAAATRGEELGLTEDEIR  942
              +NVVQEKK+S+ L  V+ RY+NRAIETAQVIEELI+MAK F+AA +R++ LGL  DEI 
Sbjct  897   NNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIA  956

Query  943   FYDALANNESAVRELTDETLKKIAHELTENLRQNITVDWSERESVRARLRLMVKRILRKY  1002
             FYDALA+NESAVREL DETLKK+A E+T +LR++ TVDW  RESVRARLR++V++ L KY
Sbjct  957   FYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKY  1016

Query  1003  KYPPDQQDGAVELVLQQAQALGEAWS  1028
             KYPPD+  +AVEL+L+QA+ ++++W+
Sbjct  1017  KYPPDKALDAVELILKQAEVVSNSWT  1042

35) Mpe_A0011 in NC_008825


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score = 1007 bits (3817),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 581/1070 (55%), Positives = 820/1070 (77%), Gaps = 38/1070 (3%)

Query  1     MTEDQLEQECLAWLADVGWQHRYGPDIAPDGDAPERDSYRQVLLLGRLRSAVAALNPTVP  60
             ++ED+LEQ  L+W+A+ GW+   GPDIAPDG  P R S+++V+L   +R  + +LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    AAAREDAIRQVLDLGTPVLLAANRHFHRLLVGGVPVQYQQDGETRGDFVRLVDWSDPSRN  120
             A+  ++ I ++    +P ++ +N+ FH+LL++GVPV+Y++D+    D   L+D ++P  N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAVNQFSVTGPHHTRRPDIVLFVNGLPLVLIELKNPADLNADVWKAFHQIQTYKAQIP  180
                 VNQ +++G  + RRPD++ ++NGLP+ +IELK+P+D+NAD+W AF+Q+QTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DIFQTNEVLVVSDGSEALLGSLSADSERFMAWRTIDGNTLDPLGKFHELQTLVRGALAPA  240
             D+F  NE LV+SDG +A +GSL+AD ERF++W+TI  +   PL   H+L+ +V G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YLLDYLRYFVLFEDDG-QLAKKIAGYHQFHAVRAAIAQVVTAS-------RPNSDARLRG  292
              LLDY+RYF+LFE DG +L KKIA+YHQFHAVR A+   + AS       R+N  +  + 
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK-  299

Query  293   KGGVVWHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVFSLAQDLLR  352
             K+GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  A+DLL+
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  353   EQPVQANTRQELRALLGNRPSGGIVFATIQKFMPGEDEDTFPLLSDRHNIVVMADEAHRT  412
             ++P QA+ R++LR +L+ R SGGI+F+T+QKF P ++E++ P L+ R+NIVV++DEAHR+
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  413   QYGFEAKLKTPKSALKASSELTTGNGQPPAHRAEFAPSAKYQVGYAQHLRDALPNATFVA  472
             QYG+ A L                              + Y+ GYA+H+RDALPNA+F++
Sbjct  420   QYGLSATLDK---------------------------DGAYKYGYAKHMRDALPNASFMG  452

Query  473   FTGTPVSGEDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLGLKADEMATIdde  532
             FTGTPVS+ED+DTRAVFGDY+S+YD+Q+A +DGATV+IYYESRLAKL+L+ +E+ ++  +
Sbjct  453   FTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQ  512

Query  533   vdelaedeeeSQQAKLKSRWAALEKVVGAAPRVAQVAADLVAHFEERNKAQTGKAMVVAM  592
             VD+L EDEE  Q+ K K+ W+ LEK+VG+ PR+ QVAADLV HF  RN +  GKAM+VAM
Sbjct  513   VDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAM  572

Query  593   SREICVHVYDEIVKLRPDWHSPDPEQGTIKIVMTGSASDKALLRPHIYSAQVKKRLEKRF  652
             SR+ICV++Y+ +V LRP+WHS D E+G IKI+MTGSASDK  L+PHIY+ Q KKRLE RF
Sbjct  573   SRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARF  632

Query  653   KNPADPLRMVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVD  712
             K+  DPL++VIVRDMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVD
Sbjct  633   KDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVD  692

Query  713   YIGIANELKSALKEYTAAQGRGRPTVDAHEAYSVLAEKLDALRGMLA-GTNGHGFDYSGF  771
             YIGIANELK ALK YT ++G+G+ T+DA++A++VL EKLD ++GM+A  T + GFDYS+F
Sbjct  693   YIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF  752

Query  772   LTGGHKTLAGAANFVLGIKEGKKRFADLALAMSKAFTLCCTLDEAKAVREEVAFFQAVKV  831
                 +  L +AAN++LG+ +GKKR+ D+ LA++KA +LC TLDEAK+++ E+AF+ AVKV
Sbjct  753   ENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKV  812

Query  832   ILTKRDISAQKKMDEQRELAIRQIISAAVVSEEVVDIFDAVGLDKPNIGILDDAFLAEVR  891
              + K   + +K  + +++  + +I+  A+V+  V D+F   GLDKPNIG+L D FL EVR
Sbjct  813   AIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVR  872

Query  892   NLPERNLAVELLERLLEGEIKSRFAGNVVQNKKFSDMLADVVQRYQNRSIEAAQVMEELV  951
             ++P+RNLAVELLE+LL++ I +R   NVVQ+KK+SD L  V+ RY+NR+IE+AQV+EEL+
Sbjct  873   EMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELI  932

Query  952   QMAKKFRAAAARGEQLGLTEDEVRFYDALANNESAVRELNDETLKKIAHELAENLRKNLT  1011
             QMAK F+AA AR++ LGL  DE+ FYDALA+NESAVREL DETLKK+A E++ +LRK+ T
Sbjct  933   QMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTT  992

Query  1012  VDWSARESVQAKLRLMVKRILRKYKYPPDQQDAAVELVLQQAKALGEAWA  1061
             VDW  RESV+A+LR++V++ L KYKYPPD+   AVEL+L+QA  ++++W+
Sbjct  993   VDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

36) hsdR2 in NC_014145


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  996 bits (3774),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 605/1048 (58%), Positives = 813/1048 (78%), Gaps = 22/1048 (2%)

Query  3     ILNEDHLEQATLQWLSALGWQTAHGPDISPPDAKTHGTERDTYRQVCLSHRIEAAIQRLN  62
             +L+ED+LEQ +L W+++ GW+  HGPDI+P + +     R ++++V L   +   ++ LN
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPL---RISFHDVFLRPIFRKQLETLN  57

Query  63    PGIPSTAQVEALRQVLSPNTPGLIAANRQFHRWLVEGVPVEYQKDGETRGDRVRLIDFSD  122
             P +P++   E + ++  P++P+++ +N+ FH+ L+ GVPVEY++D+    D   L+DF++
Sbjct  58    PHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNH  117

Query  123   VGRNDWLAVNQFSIQGPKHTRRPDVILFINGLPLVTLELKNPGDENADIWGAFNQLQAYK  182
                N    VNQ +I G K+ RRPDVI +INGLP+  +ELK+P+D NADIW+AFNQLQ+YK
Sbjct  118   PENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYK  177

Query  183   EDIPDLFVYNELLVITDGISARLGSLTANRERFMAWRTIDGHATDPLGPMRELETLVHGA  242
             ++I+DLF+ NE LVI+DG +AR+GSLTA+ ERF++W+TI  +   PL   ++LE +V+G 
Sbjct  178   NEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGF  236

Query  243   FDRKTLLDYLQHFILFEDDGG-LVKKVAGYHQFHAVRAVVESV----------LKASAPG  291
             F+R  LLDY++ FILFE DG  L+KK+A+YHQFHAVR  V++           L+++   
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  292   GSRKGGVVWHTQGAGKSIEMTCLGGMLMQNPQMGNPTLLVVTDRNDLDNQLFGVFAGATE  351
             GS+K+GVVWHTQG+GKSI M C +G L+Q+++M NPT++VVTDRNDLD QL+  F  A +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  352   LLHETPVQADTRPRLRELLGNRPSGGIVFTTIQKFAPGEDEDTFPVLSERSNIVVVCDEA  411
             LL + P QA  R +LRE+L+ R SGGI+FTT+QKFAP ++E++ P L+ R NIVV+ DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  412   HRSQYGFSADIKKDGKVTYGYAQYLRDALPQATFVAFTGTPVSLEDRDTRAVFGDYVHIY  471
             HRSQYG+SA + KDG   YGYA+ +RDALP+A+F++FTGTPVS ED+DTRAVFGDYV IY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  472   DVEQAVKDGATVPIYYesrlaklelseesstlldgdideltedeeddASKAAKLRRWAAL  531
             D+++AV DGATVPIYYESRLAKL+L++E    L +++D+L EDEE D    +K   W+ L
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTK-GDWSRL  535

Query  532   EKLVGAPPRIQKVAADIVEHFENRLAALDGKAMVVGMSREICVHLYDALVALRPEWHDPD  591
             EKLVG+ PRI++VAAD+V HF  R A+++GKAM+V+MSR+ICV+LY+ALVALRPEWH  D
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  592   PDKGAIKIIMTGSASDKPMLKPHIYTKEVKKRLERRYKDPADPFKLVIVRDMWLTGFDAP  651
              +KG IKIIMTGSASDK  L+PHIY K+ KKRLE R+KD  DP+K+VIVRDMWLTGFDAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  652   CMHTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALKDYTLAHGKGR  711
             C HTMYIDKPMRGH+LMQAIARVNRVFKDKPGGLVVDYIGIANELK ALK YT + GKG+
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  712   PTIDTHEALRLLLEKMEVLHGIL------HGCDYADFRAQAWQLLPKVANHILGQDDGKK  765
              TID+++A+ +LLEK++V+HG++       G DY+ F  ++ ++L   AN ILG DDGKK
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKK  775

Query  766   RFADAVLSASKAFALCCTLDEALEHRDELAFLQAVKAALTKHTTQDKKLSDEQKEHALRQ  825
             R+ D VL+ +KA +LC TLDEA   + ELAFL AVK A+ K TT DKK+S+ +K+  L +
Sbjct  776   RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSR  835

Query  826   ILSKAVVSAEVVDIFQAAGLNKPDIGILSDEFLDDVRHMKERNLAVELLERLLKDDIKTR  885
             IL +A+V++ V D+F  AGL+KP+IG+LSDEFL++VR+M +RNLAVELLE+LL+D+I +R
Sbjct  836   ILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR  895

Query  886   FKTNVVKAAKYSELLQESLKRYQNRAIETAQVIEELIAMAKQFHEEAIKGAALGLSPDER  945
              + NVV+  KYS+ L+  L RY+NRAIETAQVIEELI MAK+F+    ++ ALGL+PDE 
Sbjct  896   TNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEI  955

Query  946   AFYDALAANESAVRELGDETLKKIAVELTLKLRNSVTVDWSVRDSVRASLRVMVKTLLRR  1005
             AFYDALA NESAVRELGDETLKK+A+E+T +LR+S TVDW VR+SVRA LR++V+  L +
Sbjct  956   AFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLK  1015

Query  1006  YKYPPDKQEEATETVLRQAEMLSAEWVA  1033
             YKYPPDK  +A E +L+QAE++S  W A
Sbjct  1016  YKYPPDKALDAVELILKQAEVVSNSWTA  1043

37) hsdR1 in NC_014145


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  990 bits (3751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 595/1080 (56%), Positives = 801/1080 (75%), Gaps = 57/1080 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ +L W+++ GW+  HGPDI+P +       R ++++V L   +   ++ LNP++
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPL---RISFHDVFLRPIFRKQLETLNPHL  60

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVEYQRDGETRGDRVRLIDFSDVGR  126
             P+S  D  +  +  P++P++V +N+ FH+ L+ GVPVEY+RD+    D   L+DF++   
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  127   NDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDDI  186
             N    VNQ ++ G K+ RRPD++ ++NGLP+ V+ELK+P+D NADIW+AFNQLQ+YK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  187   PDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFDR  246
             +DLFI NE LVI+DG +AR+GSLTAD ERF++W+TI  +   PL   ++LE +V+G F+R
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNR  239

Query  247   QTLLDYLQHFILFEDDGG-LVKKVAGYHQFHAVRAVVDSV----------LKASAPGGSR  295
             + LLDY++ FILFE DG  L+KK+A+YHQFHAVR  V++           L+++   GS+
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  296   KGGVVWHTQGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFAGATELLH  355
             K+GVVWHTQG+GKSI M C AG L+ ++E++NPT+++VTDRNDLD QL+  F  A +LL 
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  356   ETPVQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRS  415
             + P QA+ R +LRE+L+ R SGGI+FTT+QKFAP ++E++ P L+ R NI+VI DEAHRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  416   QYGFAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDA  475
             QYG++A L                                      ++ +YGYA+ +RDA
Sbjct  420   QYGLSATL-----------------------------------DKDGAYKYGYAKHMRDA  444

Query  476   LPNATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEE  535
             LPNA+F++FTGTPVS ED+DTRAVFGDYV IYD+++AV DGATVPIYYESRLAKL+L +E
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  536   DTTWldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAAL  595
             +         +   +DE+   K      W+ LEKLVG+ PRI++VAAD+V HF  R A++
Sbjct  505   ELE-ALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATM  563

Query  596   DGKAMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKE  655
             +GKAM+V+MSR+ICV+LY+ALVALRPEWH  D +KG IKIIMTGSASDK  L+PHIY K+
Sbjct  564   NGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQ  623

Query  656   VKKRLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFK  715
              KKRLE R+KD  DP+K+VIVRDMWLTGFDAPC HTMYIDKPMRGHNLMQAIARVNRVFK
Sbjct  624   TKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFK  683

Query  716   DKPGGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGIL-----  770
             DKPGGLVVDYIGIANELK ALK YT + GKG+ TID+++A+ +LLEK++V+HG++     
Sbjct  684   DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTT  743

Query  771   -HGCDYADFRTQAWQLLPKVANHILGQDDGKKRFADAVLSATKAFALCCTLDEALEHRDE  829
               G DY+ F  ++ ++L   AN ILG DDGKKR+ D VL+  KA +LC TLDEA   + E
Sbjct  744   DPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKE  803

Query  830   LAFLQATKAALTKHTTQDKKLSDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             LAFL A K A+ K TT DKK+S+ +K+  L +IL +A+V++ V D+F  AGL+KP+IG+L
Sbjct  804   LAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLL  863

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S+EFL++VR+M +RNLAVELLE+LL+D+I +R + NVV+  KYS+ L+  L RY NRAIE
Sbjct  864   SDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIE  923

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             TAQVIEELI MAK+FQ    R+ ALGL+P+E AFYDALA NESAVRELGDETLKK+A+E+
Sbjct  924   TAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEV  983

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAEWVG  1069
             T +LR+S TVDW VR++VRA +R++V+  L +YKYPPDK  +A E +LKQAE++S  W +
Sbjct  984   TAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

38) hsdR3 in NC_014145


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  990 bits (3751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 595/1080 (56%), Positives = 801/1080 (75%), Gaps = 57/1080 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ +L W+++ GW+  HGPDI+P +       R ++++V L   +   ++ LNP++
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPL---RISFHDVFLRPIFRKQLETLNPHL  60

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVEYQRDGETRGDRVRLIDFSDVGR  126
             P+S  D  +  +  P++P++V +N+ FH+ L+ GVPVEY+RD+    D   L+DF++   
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  127   NDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDDI  186
             N    VNQ ++ G K+ RRPD++ ++NGLP+ V+ELK+P+D NADIW+AFNQLQ+YK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  187   PDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFDR  246
             +DLFI NE LVI+DG +AR+GSLTAD ERF++W+TI  +   PL   ++LE +V+G F+R
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNR  239

Query  247   QTLLDYLQHFILFEDDGG-LVKKVAGYHQFHAVRAVVDSV----------LKASAPGGSR  295
             + LLDY++ FILFE DG  L+KK+A+YHQFHAVR  V++           L+++   GS+
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  296   KGGVVWHTQGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFAGATELLH  355
             K+GVVWHTQG+GKSI M C AG L+ ++E++NPT+++VTDRNDLD QL+  F  A +LL 
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  356   ETPVQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRS  415
             + P QA+ R +LRE+L+ R SGGI+FTT+QKFAP ++E++ P L+ R NI+VI DEAHRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  416   QYGFAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDA  475
             QYG++A L                                      ++ +YGYA+ +RDA
Sbjct  420   QYGLSATL-----------------------------------DKDGAYKYGYAKHMRDA  444

Query  476   LPNATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEE  535
             LPNA+F++FTGTPVS ED+DTRAVFGDYV IYD+++AV DGATVPIYYESRLAKL+L +E
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  536   DTTWldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAAL  595
             +         +   +DE+   K      W+ LEKLVG+ PRI++VAAD+V HF  R A++
Sbjct  505   ELE-ALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATM  563

Query  596   DGKAMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKE  655
             +GKAM+V+MSR+ICV+LY+ALVALRPEWH  D +KG IKIIMTGSASDK  L+PHIY K+
Sbjct  564   NGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQ  623

Query  656   VKKRLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFK  715
              KKRLE R+KD  DP+K+VIVRDMWLTGFDAPC HTMYIDKPMRGHNLMQAIARVNRVFK
Sbjct  624   TKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFK  683

Query  716   DKPGGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGIL-----  770
             DKPGGLVVDYIGIANELK ALK YT + GKG+ TID+++A+ +LLEK++V+HG++     
Sbjct  684   DKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTT  743

Query  771   -HGCDYADFRTQAWQLLPKVANHILGQDDGKKRFADAVLSATKAFALCCTLDEALEHRDE  829
               G DY+ F  ++ ++L   AN ILG DDGKKR+ D VL+  KA +LC TLDEA   + E
Sbjct  744   DPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKE  803

Query  830   LAFLQATKAALTKHTTQDKKLSDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             LAFL A K A+ K TT DKK+S+ +K+  L +IL +A+V++ V D+F  AGL+KP+IG+L
Sbjct  804   LAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLL  863

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S+EFL++VR+M +RNLAVELLE+LL+D+I +R + NVV+  KYS+ L+  L RY NRAIE
Sbjct  864   SDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIE  923

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             TAQVIEELI MAK+FQ    R+ ALGL+P+E AFYDALA NESAVRELGDETLKK+A+E+
Sbjct  924   TAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEV  983

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAEWVG  1069
             T +LR+S TVDW VR++VRA +R++V+  L +YKYPPDK  +A E +LKQAE++S  W +
Sbjct  984   TAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

39) Ppro_1854 in NC_008609


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  988 bits (3743),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 587/1043 (57%), Positives = 829/1043 (80%), Gaps = 19/1043 (1%)

Query  1     MTEEHLERETLGWLADTGYSYRYGLDIAPDGPQPERGSYSQVLLVGRLREAINRLNPLVP  60
             ++E++LE+ +LGW+A+ G     G DIAPDG +P R S+ +V+L   +R  ++ LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    QVAREDALQQVLNLDTPVLLAANRAFHQLLVNGVPVQYQQEGETRGDFVRLMDFGDAGAN  120
                 ++ + ++   ++P ++ +N+AFH+LL++GVPV+Y++++    D   LMDF ++  N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAVNQFSIKGPKFTRRPDIVLFVNGLPLVLLELKNPADEKADIWKAYDQIQTYKEQIP  180
                 VNQ +I G K  RRPD++ ++NGLP+ ++ELK+P+D +ADIW A++Q+QTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFQYNEILVISDGTEARLGSLSANRERFMAWRTIDGVTLDPLGQFNELETLVRGVLAPD  240
             D+F  NE LVISDG +AR+GSL+A+ ERF++W+TI      PL + ++LE +V G +  +
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YLLDFLRFFVLFEDDGT-LVKKIAGYHQFHAVRSAIDQVVAASRP----------GGSRK  289
              LLD++R+F+LFE DG  L+KKIA+YHQFHAVR A++  + AS             GS+K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVFSLSQELLRE  349
             +GVVWHTQGSGKSI+M C+A++++++A M+NPTIVV+TDRNDLDGQL+  F  +++LL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQGETRQDLRDKLANRPSGGIVFATIQKFMPGEDEDSFPILSDRHNIVVIADEAHRTQ  409
             +P Q+  R++LR+ LA R SGGI+F+T+QKF P ++E++ P L+ R+NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEAKFKGDAKGYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISIYDMQ  469
             YG+ A +  D+ +Y+ GYA+H+RDALPNA+F++FTGTPVSSED+DTRAVFGDY+SIYD+Q
Sbjct  421   YGLSATLDKDG-AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  470   QARDDGATVAIYFESRLAKLGLKTDVLPEIdaevdelaedeeddQQARLKSRWAALEKVV  529
             +A DDGATV+IY+ESRLAKL+L+ + L  + ++VD+L EDEE DQ+ + K+ W+ LEK+V
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  530   GAEPRIKQVAADLVAHFEERNQAQSGKAMVVAMSRDICVHLYNAIIALRPEWHDEDPEKG  589
             G+EPRIKQVAADLV HF  RN + +GKAM+VAMSRDICV+LYNA++ALRPEWH ED EKG
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  590   AIKIVMTGSASDKPLLRPHIYAKQTKKRLEKRFKDPDDPLKLVIVRDMWLTGFDAPCAHT  649
              IKI+MTGSASDK  L+PHIY KQTKKRLE RFKD +DPLK+VIVRDMWLTGFDAPC HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  650   MYVDKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANDLKQALKEYTASKGRGRPTVD  709
             MY+DKPM+GHNLMQAIARVNRVF+DK GGLVVDYIGIAN+LKQALK YT SKG+G+ T+D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  710   AREAYAVLEEKLDILRAML------HEFDYSGFLTGGHGLLARTANHVLGLQDGKKRFGD  763
             AR+A+AVL EKLD++++M+        FDYS+F    + +L  +AN +LGL+DGKKR+ D
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFD  779

Query  764   TALAMSKAFTLCCTLDEARAVREEVAFFQAVKVLLTKREISTQRRTDEERELAIRQIIGS  823
               LA++KA +LC TLDEA++++ E+AF+ AVKV + K   + ++ ++ E++  + +I+++
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  824   ALVSEDVVDIFQAVGLDKPNIGILDDEFLNDVRNLPernlavellerllegeirtrFSTN  883
             A+V+ +V D+F   GLDKPNIG+L DEFL++VR++P+RNLAVELLE+LL++ I++R + N
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  884   IVQQSRFSELLAKVIARYQNRAIETAQVMEELIAMAKKFRESINRGEELGLNADELAFYD  943
             +VQ+ ++S+ L  V+ RY+NRAIETAQV+EELI MAK F+ ++ R++ LGLN+DE+AFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  944   ALANNEEAVREMGDEILKKIAHELAENLRKNISVDWSVRESVRAKLRLMVKRILRKYKYP  1003
             ALA+NE AVRE+GDE LKK+A E++ +LRK+ +VDW VRESVRA+LR++V++ L KYKYP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1004  PDRQEEAVQLVLDQAETLSAEWG  1026
             PD+  +AV+L+L QAE +S  W 
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

40) hsdR in NC_017080


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  987 bits (3741),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 610/1076 (57%), Positives = 825/1076 (77%), Gaps = 40/1076 (3%)

Query  1     MINEDAVEQKALRWFQDTGWAYLHGSELAPDVAPEQRADGKAVVLAGRLAEAVRRLNPQL  60
             M++ED +EQ +L WF + GW  LHG+++APD     R     V L   +   +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PaeaveevvraaTQREHPDLARANAAFHRRMIDGVPVRFEDPSTGEKVQDVARLVDFGGA  120
             PA   +E++   T+ E PD+  +N AFH+ ++ GVPV +     +  ++D A L+DF  +
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK--RDDKVIHDTALLMDFNHP  118

Query  121   ANNDWLVVNQLAIAGTKDGRRPDVIAYLNGLPIAVIELKNPADEKADVWAAYRQLQTYKD  180
              NN   VVNQ+AI+GTK+ RRPDVI Y+NGLPIAVIELK+P+D +AD+WAA+ QLQTYK+
Sbjct  119   ENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN  178

Query  181   EIGELFVRNAALVVSDGITARVGSLTASPEWFLPWRAVSGEADQPKVEMELERVVRGFFR  240
             EI++LF+ N ALV+SDG  AR+GSLTA  E+FLPW+++S E D+P +E +LE VV GFF 
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFN  238

Query  241   PDLLLDYLRHFILFEGEED-VVKKIAGYHQFHGvraaveatvvaaDRGVETAPGDAVRER  299
              +LLLDY+R FILFE++   ++KKIA+YHQFH+VR AV       +  + ++ G  +  R
Sbjct  239   RELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAV-------NATIVASTGKFLPLR  291

Query  300   PAADWGRRVPRGSGKAGVFWHTQGSGKSISMAMYAGKLMQQPAMNNPTLVVVTDRLDLDG  359
             +       +  GS KAGV WHTQGSGKSISM  YAGKL+QQ+ MNNPT+VVVTDR DLDG
Sbjct  292   SN------IKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDG  345

Query  360   QLFAQFAAAKSLLGEKPDQAESREQLRDYLDGRASGGIVFTTVQKFAPLDGEEAHPVLSG  419
             QL++ F  AK LL + P+QA +R+QLR+ L +R SGGI+FTTVQKFAPLDGE+AHP L+ 
Sbjct  346   QLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNL  405

Query  420   RSNVVVISDEAHRSQYGIKPTLDRKTGRYVYGYAKHLRDALSGASFIGFTGTPISSEDRD  479
             R N+VVISDEAHRSQYG+ +TLD K G Y YGYAKH+RDAL+ ASF+GFTGTP+SSED+D
Sbjct  406   RDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKD  464

Query  480   TRGVFGEYVSVYDIADAVEDGATVQIYYESRRAKLDLNDAEIETLNQQvdevvedeeted  539
             TR+VFG+YVS+YDI DAV+DGATV IYYESR AKLDLN+ E+E+L+ QVD++VEDEET++
Sbjct  465   TRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQ  524

Query  540   rertKGHWAQLAKLVGARPRLEAIADDLLAHFDQRKEAMASQVGPDGGKAMIVTMSRDIC  599
             +E+TKG+W++L KLVG+ PR+  +A DL+ HF  R+ +M        GKAMIV+MSRDIC
Sbjct  525   KEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATM-------NGKAMIVAMSRDIC  577

Query  600   VALFDEIVRRRPEMAGSRKDDGTWNPED---GSIRVVMTGTATDRVELRHHQHGKAQRER  656
             V L++ +V  RPE          W++ED   G I+++MTG+A+D+ +L+ H   K  + R
Sbjct  578   VRLYNALVALRPE----------WHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKR  627

Query  657   LAKRFKDPADPLELVIVRDMWLTGFDAPCCHTMYVDKPMRGHALMQAIARVNRVFREKAG  716
             L  RFKD  DPL +VIVRDMWLTGFDAPCCHTMY+DKPMRGH LMQAIARVNRVF++K+G
Sbjct  628   LEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPG  687

Query  717   GLVVDYIGIANELKQALKTYTESKGRGQPTVRAEDGLRILKEKVGVLRDMM---RENGGF  773
             GLVVDYIGIANELKQALKTYT+SKG+GQ T+ A D++ +L EK++V+++M      + GF
Sbjct  688   GLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGF  747

Query  774   AYAGFETQPLELLPGVTNHLLGLDDGKRRFLDVMASVLKAFSLCATLDEAAALRTEIAFF  833
              Y++FE +P ++L + +N +LGLDDGK+R++DV+ ++ KA SLC+TLDEA +L+ E+AF+
Sbjct  748   DYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  834   SAVRGVLAKHGQEEPKRGGADKSASLKLILDNAVVSEGVDDIFAMAGLERPDIGLLSEGF  893
             SAV+  + K    + K + ++K++ L  ILDNA+V+ GVDD+FA+AGL++P+IGLLS+ F
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  894   LEDVRRMPAKNLAVELLERLIRDEIRGRSRNNVVRESRYGERLAETLRRYNNRAIESGAV  953
             LE+VR MP +NLAVELLE+L+ D I++R+ NNVV+E +Y++RL   L RYNNRAIE++ V
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  954   VEELIAMARDFAEAVRRDEDLGLSPDEIAFYEALAERPEVLREMGDETLKALAVELTAKL  1013
             +EELI MA++F  A+ RD+ LGL+PDEIAFY+ALAE    +RE+GDETLK LA+E+TA+L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  1014  RASTTVDWRVRESVrarmrllikrllrkhrYPPAGQERAVDVVIAQAERLSEGWSA  1069
             R STTVDW+VRESVRAR+R+L+++ L K +YPP     AV++++ QAE +S++W+A
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

41) STH1908 in NC_006177


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 606/1077 (57%), Positives = 817/1077 (76%), Gaps = 51/1077 (4%)

Query  3     VLSEETLEQAALEWLRELGWAVAHGPDISPVDANTPGTERESYRQVVLTGRLREAIRGLN  62
             +LSE+ LEQ +L W+   GW V HGPDI+P D++ P   R S+++V L   +R  +  LN
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAP-DGKNP--LRISFHDVFLRPIFRKQLETLN  57

Query  63    PHIPASAQEDALRQVVSPNIPGLVQANRQFHRWLVEGVPVEFQKDGETRGDRVRLVDFTD  122
             PH+PAS  ++ + ++  P+ P++V +N+ FH+ L+ GVPVE+++D+    D   L+DF +
Sbjct  58    PHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNH  117

Query  123   PSRNDWLAVNQLSIQGPKKVRRPDIILYLNGLPIVVIELKNPADESADIWAAFNQLQAYK  182
             P  N    VNQ++I G K++RRPD+I Y+NGLPI VIELK+P+D +ADIWAAFNQLQ+YK
Sbjct  118   PENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYK  177

Query  183   EDIPDLFVYNELLVISDGLSARMGSLTANRERFMAWRTIDGHEIDPLGEMRELETLIRGA  242
             ++I+DLF+ NE LVISDG +AR+GSLTA+ ERF++W+TI  ++  PL E ++LE ++ G 
Sbjct  178   NEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGF  236

Query  243   FRHDLLLEYLRYFILFEEDG-HLVKKVAGYHQFHAVRAVVESV----------LKASAPG  291
             F ++LLL+Y+RYFILFE DG +L+KK+A+YHQFHAVR  V++           L+++   
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  292   GSRKGGVVWHTQGAGKSLEMTCLAGRLMSHPDLKNPTIVVVTDRNDLDNQLFGVFAGATE  351
             GS+K+GVVWHTQG+GKS+ M C AG+L+ +++++NPTIVVVTDRNDLD QL+  F  A +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  352   LLRETPVQAETRPRLRELLANRPSGGIIFTTIQKFMPGEDEDTFPVLSERTNIIVICDEA  411
             LL++ P QA  R +LRE+LA R SGGIIFTT+QKF P ++E++ P L+ R NI+VI DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  412   HRSQYGFAARLSLPERRRRPATAPMGSGGDLSDQIAAETPGGNYAVRYGYAQHMRDALPG  471
             HRSQYG++A L                             +G Y  +YGYA+HMRDALP 
Sbjct  417   HRSQYGLSATLD---------------------------KDGAY--KYGYAKHMRDALPN  447

Query  472   ATFVAFTGTPVALEDRNTRAVFGDYVHIYDVLQAVKDGATVPIYYESRLAKLDLKEEEIP  531
             A+F++FTGTPV+ ED++TRAVFGDYV IYD+ +AV DGATVPIYYESRLAKLDL++EE+ 
Sbjct  448   ASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELE  507

Query  532   RIdeaveeltedeeddaaraaQYRRWTALEKLVGAPPRIQKVAADLVAHFERRLAAMDGK  591
              +   V++L EDEE D    ++   W+ LEKLVG+ PRI++VAADLV HF  R A+M+GK
Sbjct  508   ALSSQVDDLVEDEETDQKEKTK-GDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGK  566

Query  592   AMVVCMSREICVHMYNAIVALRPEWHDPDPEKGVIKIVMTGSAADKPLLRPHIYSKEVRK  651
             AM+V MSR+ICV++YNA+VALRPEWH  D EKG IKI+MTGSA+DK  L+PHIY+K+ +K
Sbjct  567   AMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKK  626

Query  652   RLERRFKDPNDPFKIVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFRDKP  711
             RLE RFKD NDP+KIVIVRDMWLTGFDAPC HTMYIDKPMRGHNLMQAIARVNRVF+DKP
Sbjct  627   RLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP  686

Query  712   GGLVVDYIGISHELKQALREYTAARGRGEPAIDAERALDILREKMDVLRAML------HG  765
             GGLVVDYIGI++ELKQAL+ YT ++G+G+ +IDA  A+ +L EK+DV+++M+       G
Sbjct  687   GGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPG  746

Query  766   CDYSAFRTEAMALLPKVANHILGLEDGQKRFADHVVAASRAFALCCTLEGALAYRDELAF  825
              DYSAF  ++  +L   AN ILGL+DG+KR+ D V+A ++A +LC TL+ A + + ELAF
Sbjct  747   FDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAF  806

Query  826   FQAVKAALSKRAETDRKVADERKEAALRQIIAQAVVSDEVVDIFAAAGLSKPDISILSEE  885
             + AVK A+ K + TD+K ++  K++ L +I+ +A+V+  V D+FA AGL KP+I++LS+E
Sbjct  807   LSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDE  866

Query  886   FLDEVRRMKERNLAVELLQRLIKNEIKARFETNVVQSARFSDLLQQALTRYRNRTIETAQ  945
             FL+EVR M +RNLAVELL++L+++ I AR + NVVQ  ++SD L+  L RY NR+IETAQ
Sbjct  867   FLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQ  926

Query  946   VIEELIAMARRFQEEARRGEQLGLNEDELAFYDALASNESAVRELGDEVLKKMAVELTER  1005
             VIEELI MA+ FQ    R++ LGLN DE+AFYDALA NESAVRELGDE LKK+A+E+T +
Sbjct  927   VIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQ  986

Query  1006  LRKSVTVDWARRETvrarlrvmvrtllrrYKYPPDRQEAATNLVLKQAEVLSQEWAT  1062
             LRKS TVDW  RE+VRARLR++VR  L +YKYPPD+   A +L+LKQAEV+S+ W++
Sbjct  987   LRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

42) Bpro_1944 in NC_007948


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  983 bits (3726),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 580/1050 (56%), Positives = 812/1050 (78%), Gaps = 26/1050 (2%)

Query  1     MTEDQLEQETLAWLADVGYTHRYGPDIAHDGAMPERSSYRQVLLPFRLREAIQKLNPGIP  60
             ++ED+LEQ +L+W+A+ G     GPDIA DG  P R S+++V+L   +R  ++ LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    TAAREDALKQVLDLGIPALLTANQHFHRLLVAGVPVRYQKDGETRGDFVRLIDWADPERN  120
             ++  ++ + ++     P ++ +N+ FH+LL++GVPV Y++D+    D   L+D  +PE N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAVNQFSIKGPHHTRRPDIVLFVNGLPLVLLELKNPADKNADIWRAYDQIQTYKEQIP  180
                 VNQ +I G  + RRPD++ ++NGLP+ ++ELK+P+D NADIW A++Q+QTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFQTNEVLVITDGTEALMGSLSADAERFMAWRTIDGVTLDPLGEFNELQTLVRGVLAPA  240
             D+F  NE LVI+DG +A +GSL+AD ERF++W+TI      PL E ++L+ +V G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YFLDFLRYFVLFEDDGA-LVKKIAGYHQFHAVRAAILQVVDASRP----------GGSQK  289
              +LD++RYF+LFE DG  L+KKIA+YHQFHAVR A+   + AS             GS+K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVFSLAQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  A+DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQVSTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPMLSDRHNIVVIADEAHRTQ  409
             +P Q S R++LR  LA R SGGI+F+T+QKF P ++E++ P L+ R+NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEAKLKGKQGQESYQGGYAQHLRDALPNATFVAFTGTPVSSTDRDTRAVFGDYIHIYD  469
             YG+ A L +K+G  +Y+ GYA+H+RDALPNA+F++FTGTPVSS D+DTRAVFGDY+ IYD
Sbjct  421   YGLSATL-DKDG--AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  470   MQQAKDDGATVAIYYESRLAKLSLIESDLSQMdeevdelaeddeeSQQAVLKSRWAALEK  529
             +Q+A DDGATV+IYYESRLAKL L + +L  +  +VD+L ED+E  Q+   K+ W+ LEK
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  530   VVGAEPRVASVAADLVTHFEERNKAQPGKAMVVAMSRDICVHLYNEIVKLRPDWHDADPE  589
             +VG+EPR+  VAADLV HF  RN +  GKAM+VAMSRDICV+LYN +V LRP+WH  D E
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  590   KGAVKIVMTGSASDKPLLRPHIYSAQTKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCV  649
             KG +KI+MTGSASDK  L+PHIY+ QTKKRLE RFKD  DPL++VIVRDMWLTGFDAPC 
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  650   HTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKSAMKEYTQSKGRGRPT  709
             HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGI+NELK A+K YT+SKG+G+ T
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  710   VDAHEAYSVLAEKLDVLRSML------HGFDYTGFLTGGHKTLAGAANHVLGLNTGSSRD  763
             +DA++A++VL EKLDV+++M+       GFDY++F    +  L +AAN +LGL+     D
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD-----D  772

Query  764   GKKRFADTALAMSQAFTLCCTLDEAKAVREEVAFMQGVKVILTKKELTAKRRTDEARELA  823
             GKKR+ D  LA+++A +LC TLDEAK+++ E+AF+ +VKV + K   T K+ ++  ++  
Sbjct  773   GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL  832

Query  824   IRQIIssavvsesvvDIFDAVGLDKPNIGLLDDEFLAQVKNLPEKNLAVELLERLLEGEI  883
             + +I+ +A+V+ +V D+F   GLDKPNIGLL DEFL +V+++P++NLAVELLE+LL++ I
Sbjct  833   LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGI  892

Query  884   KSRFTSNVVQDKKFSEMLANVITRYQNRSIETAQVMEELVEMAKKFREAASRGESLGLTE  943
              +R  +NVVQ+KK+S+ L  V+ RY+NR+IETAQV+EEL++MAK F+ A +R+++LGL  
Sbjct  893   HARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNP  952

Query  944   DEVRFYDALANNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRAKLRLMVKRI  1003
             DE+ FYDALA+NESAVREL DETLKK+A E+T +LR++ +VDW  RESVRA+LR++V++ 
Sbjct  953   DEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  1004  LRKYKYPPDLQDAAVELVLKQAQVMGESWS  1033
             L KYKYPPD    AVEL+LKQA+V+++SW+
Sbjct  1013  LLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

43) Bcep1808_0004 in NC_009256


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  979 bits (3711),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 605/1053 (58%), Positives = 791/1053 (76%), Gaps = 28/1053 (2%)

Query  4     ISEDAVEQAMLEWLANLGWQTAHGPDVSPPDAKTPGTERNSYRDVALRHRLAAAIAKLNP  63
             +SED +EQ  L W+A  GW+  HGPD++P D+K P   R S++DV LR  +   +  LNP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAP-DGKNP--LRISFHDVFLRPIFRKQLETLNP  58

Query  64    QIPAVarddalrralNPNTPGHVNANRQLYRWLVDGVPVEFQKDGETRGDRVRLVDFTDI  123
             ++PA   D+ + R   P++P+ V +N+ + + L+ GVPVE+++D+    D   L+DF + 
Sbjct  59    HLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHP  118

Query  124   AANDWLAVNQLAFQGPKQLRRPDVVLYLNGLPIVVVELKNPGDENADIWAAWNQLQTYHQ  183
               N    VNQ+A+ G KQLRRPDV+ Y+NGLPI V+ELK+P+D NADIWAA NQLQTY +
Sbjct  119   ENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN  178

Query  184   DIPDLFNANVLEVISDGTTARMGSLTSNKERFLAWCTIDGNEIDPLGAMRELETLTRGLF  243
             +I+DLF  N   VISDG  AR+GSLT++ ERFL+W TI  ++  PL   ++LE +  G+F
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFF  237

Query  244   RRDYLLEYLRHFILFEDDG-QLIKKVAAYHQFHAVRAVVQSV----------LQASAPGG  292
              R+ LL+Y+R FILFE DG +LIKK+AAYHQFHAVR  V++           L+++   G
Sbjct  238   NRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG  297

Query  293   SRKGGVVWHTQGAGKSIEMTCLAGALMAHEDMGNPTLVVVTDRNDLDNQLFGVFAGAKEL  352
             S+K+GVVWHTQG+GKSI M C AG L+ + +M NPT+VVVTDRNDLD QL+  F  AK+L
Sbjct  298   SKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDL  357

Query  353   LRETPVQADTRPELRRLLANRPSGGIIFTTIQKFTPGTDEDTFPVLSSRRNIVVICDEAH  412
             L++ P QA  R +LR +LA R SGGIIFTT+QKF+P  +E++ P L+ R NIVVI DEAH
Sbjct  358   LKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAH  417

Query  413   RSQYGFDARLPITDCKGESTAVRYGYAQYLRDALPEATFVAFTGTPVSLDDRDTRAVFGD  472
             RSQYG+ A L      +   A +YGYA+ +RDALP+A+F++FTGTPVS +D+DTRAVFGD
Sbjct  418   RSQYGLSATL------DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  473   YVHIYDIEQAVKDGATVPIYYESRLASLELKEGDASILddevdeltedeendeAKVATLR  532
             YV IYDI++AV DGATVPIYYESRLA L+L++ +   L  +VD+L EDEE D  K  T  
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETD-QKEKTKG  530

Query  533   RWAALEKIVGAPPRIQKVAADIVSHFENRQAVMDGKAMIVAMSRDICVHLYNAITQLRPE  592
              W+ LEK+VG+ PRI++VAAD+V HF  R+A M+GKAMIVAMSRDICV+LYNA+  LRPE
Sbjct  531   DWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPE  590

Query  593   WHSDDSTQGAIKIVMTGSASDKAMLKPHIYSKKVRDDLEKRFKDPSDPFKLVIVRDMWLT  652
             WHS+D  +G IKI+MTGSASDK  L+PHIY+K+ +  LE RFKD +DP+K+VIVRDMWLT
Sbjct  591   WHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLT  650

Query  653   GFDAPCMHTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALATYTQA  712
             GFDAPC HTMYIDKPMRGH+LMQAIARVNRVFKDKPGGLVVDYIGIANELK AL TYT++
Sbjct  651   GFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDS  710

Query  713   RGRGRPTIDAREALAVLAEKIDVLHNML------HGVDYAAFRSQAWQLLPAVANHVLGQ  766
             +G+G+ TIDAR+A+AVL EK+DV+H M+       G DY+AF +++ ++L   AN +LG 
Sbjct  711   KGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGL  770

Query  767   DDGKKRFADTVLAASKAFALCCTLAEALAYRDELAFLQAVKAALIKHDGADKALTDEQKE  826
             DDGKKR+ D VLA +KA +LC TL EA + + ELAFL AVK A+IK   +DK +++ +K+
Sbjct  771   DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKN  830

Query  827   HALRQIISRAVVSDQVIDVFSAAGLKRPDISVLSDGFLEDVRHMQQRNLAVELLERLLRD  886
               L +I+  A+V+  V DVF+ AGL +P+I++LSD FLE+VR+M QRNLAVELLE+LL D
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  887   QIKSRFKTNVVQSAKFSELLQQSLTRYRNRAVETAQVIEELIAMAKKFQVEAQRGMELGL  946
              I +R + NVVQ  K+S+ L+  L RY NRA+ETAQVIEELI MAK FQ    R+  LGL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  947   SPDEMAFYDALATNEAAVRELGDDTLKKIAVELVVKLRGSVTVDWSKRETVRARLRVMVK  1006
             +PDE+AFYDALA NE+AVRELGD+TLKK+A+E+  +LR S TVDW  RE+VRARLR++V+
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1007  TLLKRYKYPPDRQEEATDTVLSQAESLSLAWVG  1039
               L +YKYPPD+  +A + +L QAE +S +W +
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

44) Pnap_4782 in NC_008761


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  972 bits (3683),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 570/1024 (56%), Positives = 794/1024 (78%), Gaps = 21/1024 (2%)

Query  1     MTEDQLEQETLAWLQDVGYTCHCGYDIAPDGPAPERSSFSQALLPFRLREAIHKLNPGIP  60
             ++ED+LEQ +L+W+ + G     G DIAPDG  P R SF + +L   +R  ++ LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    TPAREDAFKQVLDLGIPALLSANRHFHKLLVGGVPVEYQKDGQTRGDFVRLIDWAQPARN  120
             ++  ++ + ++     P ++ +N+ FH LL++GVPVEY++D++   D   L+D  +P  N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EFLAVNQFSLKGAHHTRRPDIILFVNGLPLVLLELKNPADLNANVWKAYDQIQTYKAQIP  180
              F  VNQ ++ G+ + RRPD+I ++NGLP+ ++ELK+P+D+NA++W A++Q+QTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   GVFEYNEVLVISDGTEAllgslssssERFMAWRTIDGQALDPLGQFNELQTLVRGVLAPA  240
             ++F  NE LVISDG +A +GSL++  ERF++W+TI  +   PL + ++L+ +V G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YLLDYLRYFVLFEDDG-QLAKKIAGYHQFHAVRSAITQVVTASRP----------GGTHK  289
              LLDY+RYF+LFE DG +L KKIA+YHQFHAVR A+   + AS             G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVFSLAQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  A+DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQVSTRQDLRTRLANRPSGGIVFATIQKFMPGEDEDTFPTLSERHNIVVIADEAHRTQ  409
             +P Q S R++LR  LA R SGGI+F+T+QKF P ++E++ P+L+ R+NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEAKLKGKPGHETYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISVYD  469
             YG+ A L +K G  +Y+ GYA+H+RDALPNA+F++FTGTPVSSED+DTRAVFGDY+S+YD
Sbjct  421   YGLSATL-DKDG--AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  470   MQQAKEDGATVAIYYESRLAKLKLKEEDFSLIdeevdelaedeeeSTQAKLKSRWAALEK  529
             +Q+A +DGATV+IYYESRLAKL L++E++  +  +VD+L EDEE   + K K+ W+ LEK
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  530   VVGAEPRVASVAADLVAHFEERNKAQSGKAMTVAMSRDICVHLYNEIVKLRPDWHDPDPE  589
             +VG+EPR+  VAADLV HF  RN + +GKAM VAMSRDICV+LYN +V LRP+WH  D E
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  590   KGAIKIVMTGSSSDKALLRPHIYSAQVKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCV  649
             KG IKI+MTGS+SDK  L+PHIY+ Q KKRLE RFKD  DPL++VIVRDMWLTGFDAPC 
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  650   HTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTQSKGRGRPT  709
             HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGI+NELK A+K YT+SKG+G+ T
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  710   VDAHEAYSVLAEKLDILQTML------HGYDYSGFLTGGHKALAGAANHVLGAQDGKKRF  763
             +DA++A++VL EKLD+++ M+       G+DYS+F    +  L +AAN +LG +DGKKR+
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRY  777

Query  764   ADTALQMSKAFSLCCTLDEAKAVREEVAFLQGVKVILTKKDLSAQKKTDEQRDLAIRQII  823
              D  L ++KA SLC TLDEAK+++ E+AFL +VKV + K   + +K ++ +++  + +I+
Sbjct  778   FDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRIL  837

Query  824   NSAVVSDSVVDIFDAVGLDKPNIGLLSDEFLAQVKNLPEKNLAVELLERLLEGEIKSRFA  883
             ++A+V+ +V D+F   GLDKPNIGLLSDEFL +V+++P++NLAVELLE+LL++ I +R  
Sbjct  838   DNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTN  897

Query  884   SNVVQEKKFSELLAGVIKRYQNRSIETAQVMEELVAMARKFQEAANRGEALGLTEDEIKF  943
             +NVVQEKK+S+ L +V+ RY+NR+IETAQV+EEL+ MA+ FQ A  R++ALGL  DEI F
Sbjct  898   NNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAF  957

Query  944   YDALATNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRARLRLMVRRILRKYK  1003
             YDALA NESAVREL DETLKK+A E+T +LR++ +VDW  RESVRARLR++VR+ L KYK
Sbjct  958   YDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYK  1017

Query  1004  YPPD  1007
             YPPD
Sbjct  1018  YPPD  1021

45) Acav_4671 in NC_015138


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  966 bits (3659),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/1083 (54%), Positives = 802/1083 (75%), Gaps = 59/1083 (5%)

Query  1     MTEDQLEQDALSWLVEVGYTHLSGYDIAPDGPAPERDSFRQVLLPQRLRDAIARLNPHIP  60
             ++ED+LEQ +L+W+   G   L G DIAPDG  P R SF++V+L   +R  +  LNPH+P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDAFKQVQDLGTPVLLSANRHFHRLLVGGVPVQYQQDGETRGDFVRLVDWGNAQAN  120
              +  ++ + ++    +P ++ +N+ FH+LL++GVPV+Y++D+    D   L+D  +++ N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAVNQFSLKGPHHTRRPDIILFLNGLPVVLLELKNPADENASIWKAYEQIQTYKAQIP  180
                 VNQ ++ G  + RRPD+I ++NGLP+ ++ELK+P+D NA IW A++Q+QTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFQYNEVLVVSDGSEALMGSLSSNAERFMAWRTIDGVALDPLGQFNELETLVRGALAPA  240
             D+F  NE LV+SDG +A +GSL+++ ERF++W+TI      PL + ++LE +V G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YVLDYLRYFVLFEDDGG-LVKKIAGYHQFHAVRAAIEQVVAASRP----------SGSHK  289
              +LDY+RYF+LFE DG  L+KKIA+YHQFHAVR A++  + AS            +GS K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVFSLAQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  A+DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQVETRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPVLSNRSNIVVIADEAHRTQ  409
             +P Q   R++LR  LA R SGGI+F+T+QKF P ++E++ P L+ R NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFEAKLKTIRRKAGQPEgaatarttgdaassaLTVDFVPPAYEVEHKYQAGYAQHLRDA  469
             YG+ A L                                    + +  Y+ GYA+H+RDA
Sbjct  421   YGLSATL------------------------------------DKDGAYKYGYAKHMRDA  444

Query  470   LPHATFVAFTGTPVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYYESRLAKLSLKQD  529
             LP+A+F++FTGTPVSSED+DTRAVFGDY+ +YD+Q+A +DGATV+IYYESRLAKL L+++
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  530   ELPHLdeevdelaedeeeSTQARLKSRWAALEKVVGAEPRVAAVAADLVKHFEERNKAQS  589
             EL  L  +VD+L EDEE   + + K+ W+ LEK+VG+EPR+  VAADLVKHF  RN + +
Sbjct  505   ELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMN  564

Query  590   GKAMVVAMSRDICVHLYDEITRLRPGWHDADPEKGAVKIVMTGSASDKALLRPHIYGGQV  649
             GKAM+VAMSRDICV+LY+ +  LRP WH  D EKG +KI+MTGSASDK  L+PHIY  Q 
Sbjct  565   GKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQT  624

Query  650   KKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKD  709
             KKRLE RFKD  DPL++VIVRDMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRVFKD
Sbjct  625   KKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKD  684

Query  710   KQGGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAHEAYAVLEEKLDVLRAML------  763
             K GGLVVDYIGI+NELK A+K YT SKG+G+ T+DA++A+AVL EKLDV+++M+      
Sbjct  685   KPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTD  744

Query  764   HGFDYSGFLTGGHKVLAGAANHVLGLKSEGRRDGKKRFADTALAMSKAFTLCCTLDEAKA  823
              GFDYS+F    + VL +AAN +LGL      DGKKR+ D  LA++KA +LC TLDEAK+
Sbjct  745   PGFDYSAFENNPQHVLLDAANYILGLD-----DGKKRYFDVVLALNKAWSLCSTLDEAKP  799

Query  824   VREEVAFMQAVKVILtkkditqqkktdEQRELAIRQIIGSAVVSDRVVDIFDAVGLDKPN  883
             ++ E+AF+ AVKV + K   T++K ++ +++  + +I+++A+V+  V D+F   GLDKPN
Sbjct  800   LQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPN  859

Query  884   IGLLDDDFLAQVKNLPERNLAVELLERLLEGEIKSRFATNVVQERKFSELLGNVIKRYQN  943
             IGLL D+FL +V+++P+RNLAVELLE+LL++ I +R   NVVQE+K+S+ L  V+ RY+N
Sbjct  860   IGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNN  919

Query  944   RSIETAQVMEELVEMARKFREAASRGESLGLTDDEVKFYDALILNESAARELSDETLKKI  1003
             R+IETAQV+EEL++MA+ F+ A +R+++LGL  DE+ FYDAL  NESA REL+DETLKK+
Sbjct  920   RAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKL  979

Query  1004  AHELTTSLRQNISVDWAHRESVRAKLRLMVKRILRKYKYPPDLADAAVELVLEQAETIGD  1063
             A E+T+ LR++ +VDW  RESVRA+LR++V++ L KYKYPPD A  AVEL+L QAE +++
Sbjct  980   AIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

Query  1064  EWV  1066
              W 
Sbjct  1040  SWT  1042

46) Sputcn32_2912 in NC_009438


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  959 bits (3634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 588/1059 (56%), Positives = 817/1059 (78%), Gaps = 31/1059 (2%)

Query  1     MTEDQLEQEALGWLGEIGYTHICGYDIAPDGANPERQDYRQPLLLERLRSAIARLNPQIP  60
             ++ED+LEQ +LGW++  G   + G DIAPDG NP R  +++ +L   +R  +  LNP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    QQAREDALASVMDLRIPSLLSANRHFHGVLVNGVPVSYQKDGETRGDFVRLIDWENRPGT  120
                 ++ ++ +     P ++ +N+ FH +L++GVPV Y++D+    D   L+D  N+P  
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDF-NHPEN  120

Query  121   NEFLAVNQYTLKGPHHSRRPDIILFINGLPLVLFELKNPADEHADIWKAYDQIQTYKEQV  180
             N F  VNQ ++ G  + RRPD+I +INGLP+ ++ELK+P+D +ADIW A++Q+QTYK+++
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   PDVFQYNEILVISDGTEARMGSLSANAERYMQWRTIDGVNLDPLGAFGELETMVRGVFAP  240
             +D+F  NE LVISDG +AR+GSL+A+ ER++ W+TI   +  PL    +LE +V G F  
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNR  239

Query  241   AYLLDYLRFFVLFEDDG-QLVKKIAGYHQFHAVRSAITQVVTAS-------RPDVMGSNK  292
               LLDY+R+F+LFE DG +L+KKIA+YHQFHAVR A+   + AS       R+++  ++K
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  293   GKGGVVWHTQGSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVFSLAQDLL  352
              K+GVVWHTQGSGKSI+M C+A++++++A M+NPTIVV+TDRNDLDGQL+  F  A+DLL
Sbjct  300   -KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  353   REQPVQVETRQDLRAKLANRPSGGIIFATIQKFAPGADEDVFPILSDRHNIVVVADEAHR  412
             +++P Q   R++LR  LA R SGGIIF+T+QKFAP  +E+  P L+ R+NIVV++DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  413   TQYGFEAKLKVPELNAGVAEASAAYHSRYQVGFAQHLRDALPNATFVAFTGTPVSSEDRD  472
             +QYG+ A L          +  +AY  +Y  G+A+H+RDALPNA+F++FTGTPVSSED+D
Sbjct  419   SQYGLSATL----------DKDGAY--KY--GYAKHMRDALPNASFMGFTGTPVSSEDKD  464

Query  473   TRAVFGDYIHIYDMQQAKEDGATVAIYYESRLAklklkeeelPHIddevdelaedeeeeQ  532
             TRAVFGDY+ IYD+Q+A +DGATV+IYYESRLAKL L++EEL  +  +VD+L EDEE +Q
Sbjct  465   TRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQ  524

Query  533   QSKLKSKWSALEKIVGAEPRIVKVAADLVAHFEARQQAQTGKAMVVAMSREICVHLYNAI  592
             + K K+ WS LEK+VG+EPRI +VAADLV HF AR+ +  GKAM+VAMSR+ICV+LYNA+
Sbjct  525   KEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNAL  584

Query  593   CALRPDWHDDDPEKGAIKIVMTGSSSDKPLLRPHIHSKQVKKRLEKRFKDPKDPLQIVIV  652
              ALRP+WH +D EKG IKI+MTGS+SDK  L+PHI +KQ KKRLE RFKD +DPL+IVIV
Sbjct  585   VALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIV  644

Query  653   RDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANELKSAL  712
             RDMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRVF+DK GGLVVDYIGIANELK AL
Sbjct  645   RDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQAL  704

Query  713   KEYTASNGRGRPTVDAAEAWSLLEEKLDILRSLL------HGFDYSDFTKGGHKLLAGAA  766
             K YT S+G+G+ T+DA +A ++L EKLD++++++       GFDYS F +  + +L +AA
Sbjct  705   KTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAA  764

Query  767   NHILGVEDGKKRFADNALAMSKAFSLCCTLDEAKAVREEVAFLQAVKVLLTKRDLSAKKR  826
             N ILG++DGKKR+ D  LA++KA SLC TLDEAK+++ E+AFL AVKV + K   + KK 
Sbjct  765   NYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKF  824

Query  827   SDEEKDIAIRQIISQAVVSDEVVDIFDAVGLEKPNIGLLDDEFLAEVRNLPEKNLAVELL  886
             S+ EK+  + +I+ +A+V+  V D+F   GL+KPNIGLL DEFL EVR++P++NLAVELL
Sbjct  825   SQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  887   ERLLEGEIKSRFASNVIQQKKFSELLSNVVKRYQNRSIETAQVMEELVDMAKKFREAAKR  946
             E+LL++ I +R  +NV+Q+KK+S+ L  V+ RY+NR+IETAQV+EEL++MAK F+ A  R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  947   GESLGLSDDEVKFYDalanneaavlelGDEILKKIAHELTDNLRANISVDWSQRESVRAK  1006
             +++LGL+ DE+ FYDALA+NE+AV ELGDE LKK+A E+T +LR + +VDW  RESVRA+
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1007  LRIMVKRILRKYKYPPDQADGAVQLVLQQAEALGEQWAA  1045
             LRI+V++ L KYKYPPD+A +AV+L+L+QAE +++ W+A
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

47) PSPTO_1089 in NC_004578


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  957 bits (3627),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 595/1056 (57%), Positives = 810/1056 (77%), Gaps = 33/1056 (3%)

Query  1     MTEDQLEQETLGWLAETGYSHVYGPTIAYDGESPERDNYRQVLLVERLRSAIVRLNPKVP  60
             ++ED+LEQ +LGW+A  G   + GP IA DG +P R ++++V+L   +R  +  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDALKQVQELGLPVQLSANRLFHRLLVSGVPVQYQKDGETRGDFVRLIDWVEVKAN  120
              +  ++ + ++     P  + +N+ FH+LL+SGVPV+Y++D+    D   L+D  +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   DWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVKADLGKAFDQIQTYKEQIP  180
                 +NQ +I G K+ RRPD+I ++NGLP+ ++ELK+P+DV+AD+  AF+Q+QTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DLFQYNEILVISDGSEARMGSLSADVERFMNWRTIDGKDLDPLGQFNELETLVRGALAPP  240
             DLF  NE LVISDG +AR+GSL+AD ERF+ W+TI   D  PL + ++LE +V G +   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   MLLDYLRYFVLFEDDG-RLVKKIAGYHQFHAVRAAIGQVVSASRP----------GGTHK  289
             +LLDY+RYF+LFE DG RL+KKIA+YHQFHAVR A+   + AS             G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQDAAMENPTIVVITDRNDLDGQLFGVFSLSHDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q+A M+NPTIVV+TDRNDLDGQL+  F  + DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPFQVESRGDLRSKLTNRPSGGIVFATIQKFMPGADEDIFPILSDRSNIVVIADEAHRTQ  409
             +P Q  +R++LR  L+ R SGGI+F+T+QKF P  +E+  P L+ R NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFGAELKVSEATADTASQTRYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRSVFGE  469
             YG++A L           +  Y+ GYA+H+RDALPNA+F++FTGTPVSSED+DTR+VFG+
Sbjct  421   YGLSATL---------DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  470   YIHIYDMQQATEDGATVAIYYESRLAKLSLKDSELPAIddqfdelaedeeddqqSRLKSR  529
             Y+ IYD+Q+A +DGATV+IYYESRLAKL L++ EL A+  Q D+L EDEE DQ+ + K+ 
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  530   WAALEKVVGAEPRIRNVAADLVKHSEERNQGLVSMGQMPGKAMIVAMSREICVHLYNEIT  589
             W+ LEK+VG+EPRI++VAADLVKH   RN      + M GKAMIVAMSR+ICV+LYN + 
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARN------ATMNGKAMIVAMSRDICVRLYNALV  585

Query  590   ALRPEWHDEDPEKGAIKVIMTGSASDKASLRPHIYSGQIKRRLEKRFKDPLDPLKLVIVR  649
             ALRPEWH ED EKG IK+IMTGSASDK  L+PHIY+ Q K+RLE RFKD  DPLK+VIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  650   DMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALK  709
             DMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGIANELK ALK
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  710   EYTGSKGKGRPTVDAHEAYSVLEEKLDVLRSLL------HGFDCSDFLTGGHKLLAGAAN  763
              YT+SKGKG+ T+DA++A++VL EKLDV+++++       GFD S F    + +L +AAN
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAAN  765

Query  764   HVLSLEDGKKRFADTALAMSKAFTLCCTLDEAKAVREEVAFFQAIKVILIKREVSQQKKT  823
              +L+L+DGKKR+ D  LA++KA +LC TLDEAK+++ E+AF+ A+KV +IK   +++K +
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  824   DEERELVIRQIIGNAVVSGDVVDIFQAVGLDKPNIGLLDDTFLAEVRNLPEKNLAVELLE  883
             + E++ ++ +I++NA+V+ +V D+F   GLDKPNIGLL D FL EVR++P++NLAVELLE
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  884   RLLEDEIKSHYSTNLAQEKKFSELLVNVIKRYQNRSIETAQVIEELIGMAKKFAAASQRG  943
             +LL+D I ++ + N+ QEKK+S+ L  V+ RY+NR+IETAQVIEELI MAK F AA  R+
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  944   DALGLNDDELAFYDALANNEASVRELGHEILAKIAHELTASLRANVSVDWNSRESvrakl  1003
             DALGLN DE+AFYDALA+NE++VRELG+E L K+A E+TA LR + +VDW+ RESVRA+L
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  1004  rilvrrilrkYKYPPDHAEEAAQLILNQAETLCEAW  1039
             RILVR+ L KYKYPPD A +A +LIL+QAE + ++W
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

48) PSTAB_3393 in NC_015740


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  955 bits (3617),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 592/1029 (58%), Positives = 799/1029 (78%), Gaps = 26/1029 (2%)

Query  1     MTEDQLEQETLGWLSEVGYAHLYGPNIAYDGDNPERESYRDVLLTMRLRTAIARLNPQVP  60
             ++ED+LEQ +LGW++  G   L GP+IA DG NP R S++DV+L   +R  +  LNP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    LAAREDALRQILELGVPVQLSANRLFHRLLVGGVPVQYQKDGETRGDFVRLIDWADVRAN  120
              +  ++ + +I     P  + +N+ FH+LL++GVPV+Y++D+    D   L+D  +   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLVKAFDQLQTYKEQIP  180
                 +NQ +I G K+ RRPD+I ++NGLP+ ++ELK+P+DVNAD+  AF+QLQTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DVFHYNEILVISDGSEARMGSLSADWERFARWRTIDGVTVDPLGEFNELETLVRGVLQPA  240
             D+F  NE LVISDG +AR+GSL+AD ERF  W+TI      PL E ++LE +V G ++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   TLLDYLRYFVLFEDDG-RLVKKIAGYHQFHAVRAAIQQVVSASRP----------GGTHK  289
              LLDY+RYF+LFE DG RL+KKIA+YHQFHAVR A++  + AS             G+ K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  290   GGVVWHTQGSGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVFSLSQDLLRE  349
             +GVVWHTQGSGKSI+M C+A++++Q+A M+NPTIVV+TDRNDLDGQL+  F  ++DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  350   QPVQVATRGDLREKLANRPSGGIVFATIQKFMPGEDEDSFPVLSARSNIVVVADEAHRTQ  409
             +P Q + R++LRE LA R SGGI+F+T+QKF P ++E++ P L+ R NIVV++DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  410   YGFSASLKVPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDY  469
             YG+SA+L        +  + Y+ GYA+H+RDALPNA+F++FTGTPVSSED+DTRAVFGDY
Sbjct  421   YGLSATL--------DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  472

Query  470   IHVYDMQQAKEDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRW  529
             + +YD+Q+A +DGATV+IYYESRLAKL L++ EL  +  +VD+L EDEE DQ+ + K+ W
Sbjct  473   VSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDW  532

Query  530   AALEKVVGAEPRIKSVAADLVAHFEERNQAQSGKAMVVAMSREICVHLYNEIIALRPEWH  589
             + LEK+VG+EPRIK VAADLV HF  RN + +GKAM+VAMSR+ICV+LYN ++ALRPEWH
Sbjct  533   SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  590   DEDPEKGAVKIVMTGSASDKALLRPHIYPGQVKKRLEKRFKDPADPLQLVIVRDMWLTGF  649
              ED EKG +KI+MTGSASDK  L+PHIY  Q KKRLE RFKD  DPL++VIVRDMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  650   DAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKG  709
             DAPC HT+Y+DKPM+GHNLMQAIARVNRVFKDK GGLVVDYIGIANELK ALK YT SKG
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKG  712

Query  710   RGRPTVDAYEAYAVLEEKLDVLRSLL------HGFDYSDFLTGGHKLLAGAANHVLGLED  763
             +G+ T+DA +A+AVL EKLDV+++++       GFDYS F    + +L +AAN +LGL+D
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDD  772

Query  764   GKKRFADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKVLLTKREISAKKKTDEERELA  823
             GKKR+ D  LA++KA +LC TLDEAK+++ E+AFL A+KV + K   + KK ++ E++  
Sbjct  773   GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL  832

Query  824   IRQIIGNAVVSGDVVDVFAAVGLDKPNIGLLDDEFLAEVRNLPEKNLAVELLERLLEGEI  883
             + +I++NA+V+ +V DVFA  GLDKPNIGLL DEFL EVR++P++NLAVELLE+LL++ I
Sbjct  833   LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGI  892

Query  884   KSKFASNLAQEKKFSELLDSVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDQLGLND  943
              ++  +N+ QEKK+S+ L +V+ RY+NR+IETAQVIEELI+MAK F AA  R+D LGLN 
Sbjct  893   HARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNP  952

Query  944   DELAFYDALANNEASVRELGDEILAKIAHELTDSLRQNVTVDWSNRDSVraklrllvkri  1003
             DE+AFYDALA+NE++VRELGDE L K+A E+T  LR++ TVDW  R+SVRA+LR+LV++ 
Sbjct  953   DEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  1004  lrkykYPPD  1012
             L KYKYPPD
Sbjct  1013  LLKYKYPPD  1021

49) PT7_2213 in NC_015458


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  941 bits (3567),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 589/1086 (55%), Positives = 811/1086 (75%), Gaps = 58/1086 (5%)

Query  1     MTEDQLEQEALGWLADVGYTPRSGPDIAHDGSDPQRSGYTQVTLPQRLRDTIARLNPDIP  60
             ++ED+LEQ +LGW+A+ G     GPDIA DG +P R ++ +V L   +R  +  LNP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    AIARDEALKQVENLDTPVQLAANCAFHKLMVNGVPVQYQKDGETRGDLVRLVDWANPKNN  120
             A   DE + ++   ++P  + +N AFH L+++GVPV+Y++D+    D   L+D  +P NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EFWAVSQFTIKGPHHTRRPDIILFINGLPLVLLELKNAVNEGADIWKAYDQLQTYKAQIP  180
              F  V+Q +I G  + RRPD+I +INGLP+ ++ELK++ +  ADIW A++QLQTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   DIFEYNEILVISDGSEARFGSLSANAERFMQWRTIDGVELDPLGQFNELETLVRGLLAPQ  240
             D+F  NE LVISDG +AR+GSL+A+ ERF+ W+TI   +  PL + ++LE +V G++  +
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241   YLLDYLRYFVLFEDDGT-LIKKIAGYHQYHAVRFAIEEVVRVSRP------Dvekgkrgk  293
              LLDY+RYF+LFE DG  LIKKIA+YHQ+HAVR A++  +  S           K    K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   ggvvWHTQGSGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVFSLSQDLLRE  353
             +GVVWHTQGSGKSI+M C+A++++Q++ M+NPTIVV+TDRNDLDGQL+  F  ++DLL++
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   QPVQATTRQQLRALLGNRPSGGIVFATIQKFMPGEDEDIFPELSDRSNIVVIADEAHRTQ  413
             +P QA+ R+QLR +L+ R SGGI+F+T+QKF P ++E+  P L+ R NIVVI+DEAHR+Q
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  414   YSFEAKLKTRKNKAGNLATAYHLAPDNEPSTAFATELAGSEDYLSKYQTGYAQHLRDALP  473
             Y++ A L    +K G                               Y+ GYA+H+RDALP
Sbjct  421   YGLSATL----DKDGA------------------------------YKYGYAKHMRDALP  446

Query  474   NATFVAFTGTPVSSTDRDTRSVFGNYIHVYDMQQAKEDGATVAIYYESRLAKLKLKETdl  533
             NA+F++FTGTPVSS D+DTR+VFG+Y+ +YD+Q+A +DGATV+IYYESRLAKL L++ +L
Sbjct  447   NASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEEL  506

Query  534   eaideevdelaedeeeQTQARLKSKWAALEKVVGAEPRVASVAADLVEHFEERNKAQDGK  593
             EA+  +VD+L EDEE + + + K+ W+ LEK+VG+EPR+  VAADLV HF  RN + +GK
Sbjct  507   EALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGK  566

Query  594   AMAVGMSRDICVHLYNEIIKLRPDWHDEDPEQGTIKVIMTGSASDKALLRPHIYSGQVKK  653
             AM V+MSRDICV+LYN ++ LRP+WH ED E+G IK+IMTGSASDK  L+PHIY+ Q KK
Sbjct  567   AMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKK  626

Query  654   RLEKRFKDPADPLKMVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFRDKQ  713
             RLE RFKD  DPLK+VIVRDMWLTGFDAPC HTMYIDKPM+GHNLMQAIARVNRVF+DK 
Sbjct  627   RLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP  686

Query  714   GGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAYEALAVMLEKLDVLRAML------HG  767
             GGLVVDYIGI+NELK A+K YT SKG+G+ T+DA +A+AV+LEKLDV+++M+       G
Sbjct  687   GGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPG  746

Query  768   YDYSGFKTGGHKALAGAANHILSLRPPPGQKDAKLDGKKRFADAALALSKAFSLCCTLDE  827
             +DYS+F    +  L +AAN IL+L           DGKKR+ D  LAL+KA SLC TLDE
Sbjct  747   FDYSAFENNPQHVLLDAANYILGLD----------DGKKRYFDVVLALNKAWSLCSTLDE  796

Query  828   AKTLRDEVAFMQAVKVILTKRDISAQKKTDEQREIAIRQIINQAVVSESVVDIFDAVGLE  887
             AK L+ E+AF+ AVKV + K   + +K ++ +++  + +I+++A+V+ +V D+F   GL+
Sbjct  797   AKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLD  856

Query  888   KPNIGLLDDEFLAQVRNLPERNLAVELLERLLEGEIKSKFASNLVQQKKFSEMLSGVITR  947
             KPNIGLL DEFL +VR++P+RNLAVELLE+LL++ I ++  +N+VQ+KK+S+ L +V+ R
Sbjct  857   KPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLR  916

Query  948   YQNRSIETAQVMEELVEMAKKFKEAVSRGEELGLSEDEIRFYDALATNESAVRELTDETL  1007
             Y+NR+IETAQV+EEL++MAK F+ A++R++ LGL+ DEI FYDALA NESAVREL DETL
Sbjct  917   YNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETL  976

Query  1008  KKIAHELTENLRKNITVDWSKresvraslrllvrrilrKYKYPPDMADTAVELVLQQAEV  1067
             KK+A E+T +LRK+ TVDW  RESVRA LR+LVR+ L KYKYPPD A  AVEL+L+QAEV
Sbjct  977   KKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

Query  1068  LGEQWS  1073
             +++ W+
Sbjct  1037  VSNSWT  1042

50) KN400_0449 in NC_017454


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  870 bits (3294),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 531/1058 (51%), Positives = 770/1058 (73%), Gaps = 34/1058 (3%)

Query  4     FNESIIEDATLAWLEGLGYTIRSGLDIAPGELLAERQDYSQVLLGDRLRQALARLNPSLP  63
             ++E  +E+ +L+W+ G G  +  G DIAP+   + R  + +V+L   +R+ L  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    VEALDDAFRKLTRPEGATLEDRNRSVHRWLVDGVTVEYRHKDGHIAGAQARVIDFDLPGN  123
                +D+ + ++TRPE++ +   N++ H+ L+ GV VEY+ +D+ +    A ++DF+ P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPEN  120

Query  124   NDWLAVNQFTVIENKHNRRPDVVLFVNGLPLVLVELKNAADENATIWSAFQQFQTYKAEL  183
             N    VNQ ++   K+ RRPDV+ ++NGLP+ ++ELK+++D NA IW+AF+Q+QTYK E+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PSLFTYNSLLVISDGVEARIGTLTAGKEWFKPWRTVSGESLAGPHIPELQVMLEGVFDKR  243
             + LF  N  LVISDG +ARIG+LTA+ E+F PW+T+S E        +L+ +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RLLDLLNFFIVFEDGGDGRLIKKMAGYHQFHAVNVAVSETLRAGKSADRAAEEIGRWEAG  303
              LLD + +FI+FE +G  RLIKK+A+YHQFHAV  AV+ T+ A+          G+    
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVAST---------GKF-LP  289

Query  304   LQRGGEPGDRRIGVVWHTQGSGKSLTMAFYAGRVIREPAMSNPTLVILTDRNDLDDQLFG  363
             L+    PG ++ GVVWHTQGSGKS++M  YAG++++++ M+NPT+V++TDRNDLD+QL+ 
Sbjct  290   LRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYT  349

Query  364   TFSRCQDLLRQPPAQATDRADLRNKLAV-NAGGVVFTTIQKFFPEEKGDRHPLLSDRRNI  422
             TF + +DLL+Q P QA++R +LR+ LA  ++GG++FTT+QKF P +  + HP L+ R NI
Sbjct  350   TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNI  409

Query  423   VVIADEAHRSQYDFID----------GYARHMRDALPNASFIGFTGTPIELTDKNTRSVF  472
             VVI+DEAHRSQY++            GYA+HMRDALPNASF+GFTGTP+   DK+TR+VF
Sbjct  410   VVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVF  469

Query  473   GDYISVYDIQRAVMDGATVPIYYESRLARLELEETEKPKIDPefeevtegeeierkeKLK  532
             GDY+S+YDIQ AV DGATVPIYYESRLA+L+L++ E   + ++ +++ E+EE ++KEK K
Sbjct  470   GDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTK  529

Query  533   SRWAQLEALVGSEKRIKLVAEDLVRHFEERQAAMEGKAMVVCMSRRICIDLYNAIVALRP  592
             + W++LE LVGSE RIK VA DLV+HF  R+A+M+GKAM+V MSR IC+ LYNA+VALRP
Sbjct  530   GDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRP  589

Query  593   DWHHDDDDKGAIKVIMTGSATDPLEWQKHIRNKPRREALAKRFRSAGDPFRIVIVRDMWL  652
             +WH +D +KG IK+IMTGSA+D  + Q HI NK  +  L  RF+   DP++IVIVRDMWL
Sbjct  590   EWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWL  649

Query  653   TGFDAPSLATMYADKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADELRKALATYTE  712
             TGFDAP   TMY DKPMRGH LMQAIARVNRVFKDKPGGLVVDY+G+A+EL++AL TYT+
Sbjct  650   TGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD  709

Query  713   SGGTGKTAIDQADAVALMLEKYEVCKGLF------HGFDWTAWLTGTPQQRLTLLPAAQE  766
             S G G+T+ID  DA A++LEK +V  G+F       GFD +A +   PQ+   +L  A +
Sbjct  710   SKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQH---VLLDAAN  765

Query  767   HILSQEDGKNRLLKAVTELSKAFALAVPHEDALAIRDDVAFFQAVRAVLAKSGTGERK-S  825
              IL+ +DGK+R +  V  L+KA +L    ++A +++ ++AF+ AV+  + K  T ++K S
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  826   DEELDHAIRQIISKAVASDEVIDIFEAAGLKKPDISILSDEFLAEVRGMPQRNLAVELLQ  885
             + E +  + +I+ +A+ +  V D+F  AGL KP+I++LSDEFL EVR MPQRNLAVELL+
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  886   KLLKGEIRNRRRKNVVQARSFTEMLEEALRRYQNRAIETAQVIEELIALARQMREASGRG  945
             KLL++ I+ R  +NVVQ + +++ L   L RY+NRAIETAQVIEELI +A++ + A +R+
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  946   EELGLTEDELAFYDALEINDSAVKVLGDDTLRAIARELADTVRRNVTIDWTMRENVRAQL  1005
             + LGL  DE+AFYDAL  N+SAV+ LGD+TL+ +A E++  +R++ T+DW +RE+VRA+L
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  1006  RVLVKRILRKYGYPPDKQEKATQIVLEQTEVLSQEWAT  1043
             R+LV++ L KY YPPDK   A +++L Q+EV+S+ W++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

51) Acid345_3755 in NC_008009


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  867 bits (3283),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/1049 (50%), Positives = 755/1049 (72%), Gaps = 37/1049 (3%)

Query  7     FTESVVEEAALAWLEGLGYTVLSGPSISAGEIAAERIEADYSDVILERRVRQTLQRLNPN  66
             ++E  +E+ +L+W+ G G  VL GP I+++   + RI   + DV+L    R+ L+ LNP+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRI--SFHDVFLRPIFRKQLETLNPH  59

Query  67    LPPEALDDAFRRLTHDNETSLIANNHAFHQILVNGVTVEYNRADGSIGGALVRVIDFEAA  126
             LP+  +D+ + R+T+ +   ++ +N AFH++L++GV VEY+R D  I ++ + ++DF+ +
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHP  118

Query  127   ENNDWLAVNQFTIVEGQYTRRPDVLIFINGLPIALLELKNAADENATIWTAFKQIQTYKS  186
             ENN    VNQ +I   +  RRPDV+ +INGLPIA++ELK+++D NA IW+AF+Q+QTYK+
Sbjct  119   ENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN  178

Query  187   QIPSLFAYNELLVISDGMEARVGSLTADTERFMPWRTIGGEELAPTSLPQLQVLIEGLFE  246
             +I+ LF  NE LVISDG +AR+GSLTAD ERF+PW+TI+ E+  P    QL+ +++G+F+
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFN  238

Query  247   RRRLLDFIRHFVVFEDEGRGVLIKKIAGYHQFHAVNRALRETLSASAE----------GG  296
             R  LLD+IR F++FE +G+  LIKKIA+YHQFHAV  A+  T+ AS+            G
Sbjct  239   RELLLDYIRYFILFESDGKR-LIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG  297

Query  297   DRRVGVVWHTQGSGKSLTMAFYAGRLVLEPTLQNPTIVVITDRNDLDDQLYGTFSRCHEL  356
              ++ GVVWHTQGSGKS++M  YAG+L+ ++ ++NPTIVV+TDRNDLD+QLY TF +  +L
Sbjct  298   SKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDL  357

Query  357   LRQAPLQALDREHLRSLVQV-SSGGVIFTTIQKFMPAEGDK-YPQLTDRRNVIVVADEAH  414
             L+Q P QA +R++LR ++    SGG+IFTT+QKF P +G++  P L  R N++V++DEAH
Sbjct  358   LKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAH  417

Query  415   RSQYDFID----------GFARHMRDALPHASFIGFTGTPIEKTDVNTRSVFGDYISIYD  464
             RSQY++            G+A+HMRDALP+ASF+GFTGTP+   D +TR+VFGDY+SIYD
Sbjct  418   RSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  465   IQRAVEDGATVPIYYESRLAKLELPASEKPKVDTAFEEATEGEEVDRKEKLRTKWAAVEA  524
             IQ AV+DGATVPIYYESRLAKL+L   E   + +  ++  E+EE D+KEK +  W+ +E 
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  525   VVGTEKRLNTVAKDLVKHFEERLEVMDGKAMIVCMSRRICVDLYNEIMKLRPTWHSENDD  584
             +VG+E R++ VA DLVKHF  R   M+GKAMIV MSR ICV LYN ++ LRP WHSE+ +
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  585   AGVLKIVMTGSATDGPEWQQHIRDKRRREALGKRFKNAKDPFKIVIVRDMWLTGFDVPSL  644
              G +KI+MTGSA+D  + Q HI +K+ +  L  RFK+ +DP+KIVIVRDMWLTGFD P  
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  645   HTMYADKPMRAHGLMQAIARVNRVFKDKPGGLVVDYLGIAHELKLALATYTESGGKGQTA  704
             HTMY DKPMR+H LMQAIARVNRVFKDKPGGLVVDY+GIA+ELK AL TYT+S GKGQT+
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  705   LPQEEAVARMIEKYEICRGLF------HGFDWSMWLTGTSAQKLAILPNAQEHVLKQEDG  758
             +   +A A ++EK ++ +G+F       GFD S      ++Q   +L +A + +L  +DG
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQH--VLLDAANYILGLDDG  773

Query  759   KNRLLKAVSDLSKAFALAVPHDAALKIRDDVGFFQAIRSVLAKTASQQYR-PEQELDNAI  817
             K+R +  V  L+KA +L    D A  ++ +++F+ A++  + K ++ + + ++ E ++ +
Sbjct  774   KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLL  833

Query  818   RQIISRAMSSGEVVDIFAAAGLKKPDISILSEEFLREVSNIPQKNLAVELLRKLLNDEIK  877
              +I+  A+ +  V D+FA AGL KP+I++LS+EFL EV ++PQ+NLAVELL KLLND I 
Sbjct  834   SRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIH  893

Query  878   SRSRRNVVKGKLFSAMLESSIHKYQNRAIQAAQVIEELIGLAKEMREESAKGEELGLSED  937
             +R+  NVV+ K +S  L + + +Y+NRAI++AQVIEELI +AKE +   A+++ LGL+ D
Sbjct  894   ARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPD  953

Query  938   EVAFYDALEVNDSAVKVLGEPTLKTIARELVDTVRRNTTIDWAVRENIRANLRVLVKRIL  997
             E+AFYDAL  N+SAV+ LG+ TLK +A E+   +R++TT+DW VRE++RA LR+LV++ L
Sbjct  954   EIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTL  1013

Query  998   RKYGYPPDKQEKATLTVLEQAEALSANWA  1026
              KY YPPDK   A   +L QAE +S +W+
Sbjct  1014  LKYKYPPDKALDAVELILKQAEVVSNSWT  1042

52) Cyan7822_0695 in NC_014501


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  860 bits (3257),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 533/1049 (51%), Positives = 769/1049 (74%), Gaps = 33/1049 (3%)

Query  5     FSESVVEDATLAWFELLGYTVCHASELD-------RQSYSDIILTDSLQTALKKINPQIP  57
             +SE  +E+ +L+WF   G  V H++++        R S+ D++L   ++  L  +NP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  58    SETLQEVIKKITRSDTPNLIENNLRFHKLLTDGVDVEYQQDGRTKYDKVWLIDFKHPENN  117
             +  ++E+I +ITR+++P+++ +N  FH LL  GV VEY++D++   D   L+DF+HPENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  118   QYLAANQLTVTEGKNTRRPDVVIFINGLPIAVIELKNPADENATITGAFNQLQTYKQEIP  177
             ++   NQ++++  K+ RRPDV+ +INGLPIAVIELK+P+D NA I +AFNQLQTYK+EI+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  178   SLFSTNELLIISDGTEARIGTLTADWERFAPWRTVDGENIAPKRVAELETLIRGVFPPKT  237
              LF  NE L+ISDG +ARIG+LTAD ERF PW+T+  E+  P    +LE ++ G F    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  238   LLDILQSFIVFETDGDTITKKLAGYHQYHAVNKAITATLEATHPQ----------GDKKV  287
             LLD ++ FI+FE+DG  + KK+A+YHQ+HAV  A+ AT+ A+  +          G KK 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  288   GVVWHTQGSGKSLTMAFYAGKIIQQPEMANPTLVILTDRNDLDDQLFNTFSLCTDLLRQT  347
             GVVWHTQGSGKS++M  YAGK++QQ+EM NPT+V++TDRNDLD+QL+ TF    DLL+Q 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  348   PTQAESREQLQELLKV-ASGGVIFTTIQKFSPEYGNQ-YPLLSNRRNIILIADEAHRSQY  405
             P QA +R+QL+E+L    SGG+IFTT+QKF+P  G+Q  P L+ R NI++I+DEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  406   GLEAKVINKQEEAYISYGFAKYLRDALPNASFIGFTGTPIEAGDINTPAVFGDYIDIYDI  465
             GL A +   ++ AY  YG+AK +RDALPNASF+GFTGTP+ + D +T AVFGDY+ IYDI
Sbjct  422   GLSATL--DKDGAY-KYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  466   QRAVEDEATVKIYYEGRLAKIDLEPSERPNIDPNFeevtedeetttkeklkskWARLEAL  525
             Q AV+D ATV IYYE+RLAK+DL+  E   + ++ +++ EDEET  KEK K+ W+RLE L
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  526   VGAEKRINQIAQDIVTHFENRLASIDGKAMIVCMSRRICVDLYNAIIKLKPDWHHDEDKG  585
             VG+E RI+Q+A D+V HF  R A+++GKAMIV MSR ICV LYNA++ L+P+WH ++   
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  586   GIIKVVMTGSASDDPLFQPHIRNKKRRKDLAKRFKNPNDEMKLVIVRDMWLTGFDAPCLH  645
             G IK++MTGSASD   +QPHI NK+ +K L  RFK+ ND +K+VIVRDMWLTGFDAPC H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  646   TLYVDKPMKGHGLMQAIARVNRVFKDKPGGLVVDYLGIADQLKTALNDYTKS-DRDDTGI  704
             T+Y+DKPM+GH LMQAIARVNRVFKDKPGGLVVDY+GIA++LK AL+ YT S ++++T I
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  705   PVNEALAVCFEKYEIVKAMY------HGFNYQPFFTGTPAQRLNTIPAALDHILGIEDGK  758
                +A+AV +EK +++ +M+       GF+Y + F   P + L   +   + ILG++DGK
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQHVLLDAA---NYILGLDDGK  774

Query  759   ERYVKGVTELSKAFALVSSTDEAIAIRDEVGFFQAIKAAMVKHTTTHGGKSPEEIDAAVR  818
              RY   V  L+KA +L S+ DEA +++ E++F+ A+K A++K TTT+   S  E ++ + 
Sbjct  775   KRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLS  834

Query  819   QIVSLAVASDEVIDIFAAAGLKNPNIAILSDEFLEEIKGLPYKNVALEILRKLINDDIRS  878
             +I+  A+ +  V D+FA AGL +PNI++LSDEFLEE++ +P +N+A+E+L KL+ND+I++
Sbjct  835   RILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHA  894

Query  879   RLRRNLIQSRSFREMLENTIKRYQNRSLETAQVINELIELAKDIREAYKRGENLGLTEDE  938
             R   N++Q + + + L   + RY+NR++ETAQVI+ELI++AK+++ A  R++ LGL  DE
Sbjct  895   RTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDE  954

Query  939   IAFYDALEVNDSAVKVLGDDTLKAIARDLVIAIRNNLTIDWTVKETVRAKLRVTIKRLLK  998
             IAFYDAL  N+SAV+ LGD+TLK +A ++   +R++ T+DW V+E+VRA+LR+ +++ L 
Sbjct  955   IAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLL  1014

Query  999   KYGYPPDKQEKATLTVLQQAELLSVDWAA  1027
             KY YPPDK   A   +L+QAE++S  W+A
Sbjct  1015  KYKYPPDKALDAVELILKQAEVVSNSWTA  1043

53) K756_04780 in NC_021521


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  856 bits (3242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 538/1070 (51%), Positives = 773/1070 (73%), Gaps = 45/1070 (4%)

Query  2     LINENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRSVLREAVERLNPQL  61
             +++E+ +EQ  L  +   GW+  HG+ I +DG NP R+  ++V +R+++R  +E LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  62    PSATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVEYRENDEQKVEFARLIDFQQPNL  121
             P++  DE+++ + + +  D+   N+   + L  GV VEY+ +D    + A L+DF++P+ 
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  122   NRFDVVNQLTIAGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEI  181
             NRF VVNQ++I+G K  RRPDVICYINGLP+ V+ELK+P   NAD+  AFNQLQTYK+EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  182   GDLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNP  241
             +DLF+ N+ALVISDG  A++GSLTAD ERF PW+ + + + + + +EH+LE +V G++N 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL-LEHQLENVVNGFFNR  239

Query  242   ASLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCT----------LWAASEQGN  291
               LLDYI+ FI+FE + + RL+KKIAAYHQF +V EAV+ T          L++    G+
Sbjct  240   ELLLDYIRYFILFE-SDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   GKIGVMWHTQGSGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATFSGGQALI  351
              K GV+WHTQGSGKS+SM  YAGKLL QAE+ NPTIVVVTDRNDLDGQLY+TF  ++ L+
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   RQQPVQADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHR  411
             +Q+P QA  R+ LRE LA RE+GG+IFTT+QKF+  +GEQAHP LN R+NI+VISDEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQSVKLNELNRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYV  471
             SQYG+S +     L++ G+Y+ GYAKH+RDALPNASF+GFTGTP+S EDKDT+ VFG YV
Sbjct  419   SQYGLSAT-----LDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   SIYDITDAVEDGATVPIIYEARQIPIA-QSAEFDNVVQEAQTLIDEDDESSYN------F  524
             SIYDI DAV+DGATVPI YE+R   +  +  E++ +  + + L+++++    +       
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  525   RLREKLMGTEGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWH  584
             RL EKL+G+E R+ ++A D+VKHF  R A ++GKAM+VAMSR+ICV+LY+ + ALRPEWH
Sbjct  534   RL-EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  585   SDDVNEGAIKIVMTGSASDPADIQKHIYSSQDKKLLERRFKDPDDPLKIVIVRDMWLTGF  644
             S+DV+ G IKI+MTGSASD  ++Q HIY+ Q KK LE RFKD +DPLKIVIVRDMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  645   DAPCCNTMYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTR  704
             DAPCC+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL++A   YT 
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTD  709

Query  705   SHGKGQMTHNIAETKAKMLEYIDVVRGQFATPVNDQPFKLFDALKIEDELALFKQVMLGA  764
             S GKGQ T +  ++ A +LE +DV++G FA    D  F  + A+  + +  L+     +A
Sbjct  710   SKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQHVLLD----AA  764

Query  765   NHILALDHQTVADKTEKTLRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAI  824
             N IL+LD+            ++ ++  V   +K+ SLC++ ++ +  QKELAF  AV+  
Sbjct  765   NYILGLDDG-----------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVA  813

Query  825   LAK-REPNSTASSEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSEEFLEKIKN  883
             + K    +   S  E++  L  +L++A+ A+G  ++F L   ++PNI +LS+EFLE +++
Sbjct  814   IIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVRE  873

Query  884   SQTKELWLLAVERYLRSQINEKGTGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLN  943
                ++L +  +E+ L   I+ +   N+  +K +++RL+  L +Y+N+ +   QV+EEL++
Sbjct  874   MPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQ  933

Query  944   MSKEFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATI  1003
             M+KEF   + R++ LGL+P EIAFYDALA NESAVRELGD++LK+LA  +T +LRKS+T+
Sbjct  934   MAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTV  993

Query  1004  DWQYKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADELTT  1053
             DWQ +E+VRA++R LVR TL  +KYPPDK  +A++++L QAEV+++  T+
Sbjct  994   DWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

54) Caur_1816 in NC_010175


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  856 bits (3241),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/1059 (50%), Positives = 766/1059 (73%), Gaps = 36/1059 (3%)

Query  4     LTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDLP  63
             L+E ++E ++L+W+ + GW+V HGP+IAP+   + R ++ +V L   +R  L  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    TEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVEYRHPDGGIRGTQVRVIDFDDPAN  123
             +  +D+ + ++T+PE++D++  N+  H +L +GV VEY++ D  I++T + ++DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQVEI  183
             N    VNQ +I   K+ RR+DV+ ++NGLP+A+IELK+++D +A IW+AF+QLQTY+ EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFEKN  243
             + LF+ NE+LVISDG +ARIG+L A+ E+F PW+TIS  +   +   QLE V++G F+++
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGVYE  303
              +L  IR FI+FE DG  RL+KK+A+YHQFHAV    +E++ A+ V S+ +       + 
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAV----REAVNATIVASTGK-------FL  288

Query  304   AGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDDQL  363
             + R +  KPG ++ GVVWHTQGSGKS++M  YAG +++++ M+NPTIVV+TDRNDLD+QL
Sbjct  289   PLR-SNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  364   FNTFSRCQDLLRQPPVQAESRVHLRQLLSV-QSGGIVFTTIQKFLPEEKGDRHPVLSNRR  422
             + TF + +DLL+Q P QA +R +LR++L+  +SGGI+FTT+QKF P +  + HP L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  423   NIVVITDEAHRSQYD----------FIDGFARHMRDALPQASFIGFTGTPIEKADADTRA  472
             NIVVI+DEAHRSQY+          +  G+A+HMRDALP+ASF+GFTGTP+   D DTRA
Sbjct  408   NIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  473   VFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitegeeverkeK  532
             VFGDY+SIYDIQ AV+DGATV+IYYE+RLAKLDL +E    +  + +++ E+EE ++KEK
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  533   LKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVELYNIICTL  592
              K  W++LE +VG+E R++ +A D++ HF  R  +++GK+M+V MSR ICV LYN + +L
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  593   RPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLKLVIVRDM  652
             RP+WH ED +KG IK++MTGSASD  + QPHI NKQ +  L  RF+D NDPLK+VIVRDM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  653   WLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHELKAALAVY  712
             WLTGFD P  HTMY+DKPMRGH LMQAIARVNRVF+DKPGGLVVDY+G+A+ELK AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  713   TESGGTGKTTIDQEETVALMQEKYEICCGIL------HGFDWSDWASGDAHARIGLLPAA  766
             T+S G G+TTID  ++ A++ EK ++  G++       GFD S   +   H    +L  A
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDA  763

Query  767   QEHVLARVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTKRAPGDVR  826
              + +L+   GK R+ + V  L KA +L    + A  ++ ++AF+ A+  A+ K +  D +
Sbjct  764   ANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKK  823

Query  827   -TEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHKNLAVEV  885
              ++ + +  + RI+ + I + GV+D+FA AGL KP+I++LSDEFL EVR MP++NLAVE+
Sbjct  824   FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  886   LQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKEMREADR  945
             L+KLLN+ I  R+++N+VQ + +++ L+  L RY+NRAIE+AQVIEELI +AKE + A  
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  946   RGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQREDVRA  1005
             R++ LGL+ +E+AFYDAL  N+SAV  LGD+TL+ +A E+   +R+S ++DW  RE VRA
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1006  NLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAEWA  1044
              LR LV++ L K  YPPDK   A + +L QAEV+S  W+
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

55) Chy400_1964 in NC_012032


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  856 bits (3241),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/1059 (50%), Positives = 766/1059 (73%), Gaps = 36/1059 (3%)

Query  4     LTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDLP  63
             L+E ++E ++L+W+ + GW+V HGP+IAP+   + R ++ +V L   +R  L  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    TEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVEYRHPDGGIRGTQVRVIDFDDPAN  123
             +  +D+ + ++T+PE++D++  N+  H +L +GV VEY++ D  I++T + ++DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQVEI  183
             N    VNQ +I   K+ RR+DV+ ++NGLP+A+IELK+++D +A IW+AF+QLQTY+ EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFEKN  243
             + LF+ NE+LVISDG +ARIG+L A+ E+F PW+TIS  +   +   QLE V++G F+++
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGVYE  303
              +L  IR FI+FE DG  RL+KK+A+YHQFHAV    +E++ A+ V S+ +       + 
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAV----REAVNATIVASTGK-------FL  288

Query  304   AGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDDQL  363
             + R +  KPG ++ GVVWHTQGSGKS++M  YAG +++++ M+NPTIVV+TDRNDLD+QL
Sbjct  289   PLR-SNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  364   FNTFSRCQDLLRQPPVQAESRVHLRQLLSV-QSGGIVFTTIQKFLPEEKGDRHPVLSNRR  422
             + TF + +DLL+Q P QA +R +LR++L+  +SGGI+FTT+QKF P +  + HP L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  423   NIVVITDEAHRSQYD----------FIDGFARHMRDALPQASFIGFTGTPIEKADADTRA  472
             NIVVI+DEAHRSQY+          +  G+A+HMRDALP+ASF+GFTGTP+   D DTRA
Sbjct  408   NIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  473   VFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitegeeverkeK  532
             VFGDY+SIYDIQ AV+DGATV+IYYE+RLAKLDL +E    +  + +++ E+EE ++KEK
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  533   LKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVELYNIICTL  592
              K  W++LE +VG+E R++ +A D++ HF  R  +++GK+M+V MSR ICV LYN + +L
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  593   RPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLKLVIVRDM  652
             RP+WH ED +KG IK++MTGSASD  + QPHI NKQ +  L  RF+D NDPLK+VIVRDM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  653   WLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHELKAALAVY  712
             WLTGFD P  HTMY+DKPMRGH LMQAIARVNRVF+DKPGGLVVDY+G+A+ELK AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  713   TESGGTGKTTIDQEETVALMQEKYEICCGIL------HGFDWSDWASGDAHARIGLLPAA  766
             T+S G G+TTID  ++ A++ EK ++  G++       GFD S   +   H    +L  A
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDA  763

Query  767   QEHVLARVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTKRAPGDVR  826
              + +L+   GK R+ + V  L KA +L    + A  ++ ++AF+ A+  A+ K +  D +
Sbjct  764   ANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKK  823

Query  827   -TEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHKNLAVEV  885
              ++ + +  + RI+ + I + GV+D+FA AGL KP+I++LSDEFL EVR MP++NLAVE+
Sbjct  824   FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  886   LQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKEMREADR  945
             L+KLLN+ I  R+++N+VQ + +++ L+  L RY+NRAIE+AQVIEELI +AKE + A  
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  946   RGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQREDVRA  1005
             R++ LGL+ +E+AFYDAL  N+SAV  LGD+TL+ +A E+   +R+S ++DW  RE VRA
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1006  NLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAEWA  1044
              LR LV++ L K  YPPDK   A + +L QAEV+S  W+
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

56) hsdR in NC_011852


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  855 bits (3238),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 537/1070 (51%), Positives = 774/1070 (73%), Gaps = 45/1070 (4%)

Query  2     LINENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRAVLREAVERLNPQL  61
             +++E+ +EQ  L  +   GW+  HG+ I +DG NP R+  ++V +R+++R  +E LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  62    PSATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVEYRENDEQKVEFARLIDFQQPSL  121
             P++  DE+++ + + +  D+   N+   + L  GV VEY+ +D    + A L+DF++P  
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  122   NRFDVVNQLTILGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEI  181
             NRF VVNQ++I G K  RRPDVICYINGLP+ V+ELK+P   NAD+  AFNQLQTYK+EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  182   GDLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNP  241
             +DLF+ N+ALVISDG  A++GSLTAD ERF PW+ + + + + + +EH+LE +V G++N 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL-LEHQLENVVNGFFNR  239

Query  242   ASLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCT----------LWAASDQGN  291
               LLDYI+ FI+FE + + RL+KKIAAYHQF +V EAV+ T          L++    G+
Sbjct  240   ELLLDYIRYFILFE-SDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   GKIGVMWHTQGSGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATFSGGQALI  351
              K GV+WHTQGSGKS+SM  YAGKLL QAE+ NPTIVVVTDRNDLDGQLY+TF  ++ L+
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   RQQPVQADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHR  411
             +Q+P QA  R+ LRE LA RE+GG+IFTT+QKF+  +GEQAHP LN R+NI+VISDEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQSMKLNEANRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYV  471
             SQYG+S ++     ++ G+Y+ GYAKH+RDALPNASF+GFTGTP+S EDKDT+ VFG YV
Sbjct  419   SQYGLSATL-----DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   SIYDITDAVEDGATVPIIYEARQIPIA-QSAEFENVVREAQTLLDEDDESSYN------F  524
             SIYDI DAV+DGATVPI YE+R   +  +  E+E +  + + L+++++    +       
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  525   RLREKLMGTDGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWH  584
             RL EKL+G++ R+ ++A D+VKHF  R A ++GKAM+VAMSR+ICV+LY+ + ALRPEWH
Sbjct  534   RL-EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  585   SDDVNEGAIKIVMTGSASDPEEIQKHIYSSQDKKLLERRFKDPDDPLKVVIVRDMWLTGF  644
             S+DV+ G IKI+MTGSASD E++Q HIY+ Q KK LE RFKD +DPLK+VIVRDMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  645   DAPCCNTMYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTR  704
             DAPCC+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL++A   YT 
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTD  709

Query  705   SHGKGQMTHNIAEIKVKMLEYIDVVRGQFATPVNGQSFKLFDALKIEDELALFQQVMLGA  764
             S GKGQ T +  +    +LE +DV++G FA    + +F  + A+  + +  L++    +A
Sbjct  710   SKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQHVLLD----AA  764

Query  765   NYILALDHQMVADKTEKTPRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAI  824
             NYIL+LD+            ++ ++  V   +K+ SLC++ ++ +  QKELAF  AV+  
Sbjct  765   NYILGLDDG-----------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVA  813

Query  825   LAK-REPNSTASNEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSDEFLEKIKN  883
             + K    +   S+ E++  L  +L++A+ A+G  ++F L   ++PNI +LSDEFLE +++
Sbjct  814   IIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVRE  873

Query  884   SQTKELWLLAVERYLRSQINEKGAGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLN  943
                ++L +  +E+ L   I+ +   N+  +K +++RL+  L +Y+N+ +   QV+EEL++
Sbjct  874   MPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQ  933

Query  944   MSKEFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATI  1003
             M+KEF   + R++ LGL+P EIAFYDALA NESAVRELGD++LK+LA  +T +LRKS+T+
Sbjct  934   MAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTV  993

Query  1004  DWQYKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADELTT  1053
             DWQ +E+VRA++R LVR TL  +KYPPDK  +A++++L QAEV+++  T+
Sbjct  994   DWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

57) Clocl_3622 in NC_016627


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  853 bits (3229),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1050 (50%), Positives = 758/1050 (73%), Gaps = 31/1050 (2%)

Query  8     EDELEQAALEWFEELGYETIFAPDISPGGDYPERSDYSDVILEERLKDALKRINPDLPQE  67
             ED+LEQ +L WF   G E + +PDI+P+G  P R  + DV+L   ++  L  +NP+LP  
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  68    ALDDALHQILVPLNPALIDNNHLFQKMVTDGVNATFRANDGRIVSKQVRIFDFEKAENND  127
              +D+ + +I  P +P ++ +N  F+ ++  GV   ++  D++++     + DF+ +ENN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPENNR  122

Query  128   FLAVNQFTVIENRVEKRPDVVVFVNGIPLVVIELKNLANEDVEISDAYNQIQNYISTIPS  187
             F  VNQ ++   +  +RPDV+ ++NG+P+ VIELK+ ++ + +I  A+NQ+Q Y + I+ 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  188   LFTYNAFAVISDGVNARAGTITADEDRFMMWRTIDGDEIAPLSRPQLEVLIKGMFDKERL  247
             LF  N   VISDG NAR G++TADE+RF+ W+TI  ++  PL   QLE +++G F++E L
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  248   LDIIKNFILFQTDGKDTYKILAGYHQYHAVNKAVESTI----------RAAITEGDRKIG  297
             LD I+ FILF++DGK   K +A+YHQ+HAV  AV++TI          R+ I  G +K G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  298   VVWHTQGSGKSLSMVFYVGKLVLSKELNNPTIVVITDRNDLDDQLFSTFAKSKDLLRQEP  357
             VVWHTQGSGKS+SM  Y GKL+   E+NNPTIVV+TDRNDLD+QL++TF ++KDLL+QEP
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  358   VQAQDRADLRKLLT-RESGGIIFTTIHKFAPEEKGDSVPVLTDRENVIVIADEAHRSQYG  416
              QA +R +LR +L+ RESGGIIFTT++KFAP +  ++ P L  R+N++VI+DEAHRSQYG
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYG  422

Query  417   FRAEIVKGDTEADVKYGYAKYMRDALPNASFIGFTGTPISLADKDTRAVFGDYIDIYDMT  476
             + A +   D ++  KYGYAK MRDALPNASF+GFTGTP+S  DKDTRAVFGDY+ IYD+ 
Sbjct  423   LSATL---DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  477   RAVEDGTTVRIFYESRIAKLELPDELKPViddeyeeiteyqeytqKEKLKTKWSRLEAIV  536
              AV+DG+TV I+YESR+AKL+L +E    +  + +++ E +E  QKEK K  WSRLE +V
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  537   GAEQRVKAIAKDIVEHFEKRLAAQETEVGKGMIVVMSRRIAIDLYKAIVELRPEWHSDDI  596
             G+E R+K +A D+V HF  R A+ +   GK+MIV MSR I + LY+A+V LRPEWHS+D+
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  597   DKGVIKVVMTGSSSDPKEWQPFIGTKATRERIAKRMKDNKDELKLVIVRDMWLTGFDVPS  656
             +KG IK++MTGS+SD  + QP I  K T+ R+  R KD +D LK+VIVRDMWLTGFD P 
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  657   MHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAENLKNALNDYTES-DREKT  715
              HTMYIDKPM+GHNLMQAIARVNRVFK+K GGL+VDYIGIA++LK+AL+ YT+S ++ +T
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQT  716

Query  716   GVDTEVAAAVLVEKYELIKELL------HGHDYQKFFTGSASERMSAIVETIDYIIGLRE  769
              +D+  A AVL+EK ++I  ++       G DY  F     ++    ++++ +YI+GL +
Sbjct  717   TIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLDD  772

Query  770   ERKNDYLKLVSELSRAYSLCATTDIAEKLNLEVGFHKAVKSGIIKLIPENSRKKTAAEIE  829
              +K  Y+ +V  L++A SLC+T D A  L+ E++F  AVK +IIKL   + +K + +E +
Sbjct  773   GKKR-YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD-KKFSQSEKN  830

Query  830   AQLNQLVSKSISSNEVIDVLDAVGLNKPNIAILSDEFLEEVRNMKQRNLAVELLNRLLKG  889
             + L++++ ++I +  V DV+   GL+KPNI++LSDEFLEEVR+M QRNLAVELL++LL++
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  890   KIKTFSKRNLVQSRKFSELLENAIRKYQNRTIETTQVILELIQLAKEINEAHKRGENTGL  949
              I + ++ N+VQ +K+S+ L   + +Y+NR+IET+QVI ELIQ+AKE++ A  R++  GL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  950   TEDELAFYDALAENESAKEVMGDDILKQIARDLTEAIRKNISIDWSIRASVQAKMKMIIK  1009
               DE+AFYDALAENESA   +GD+ LK++A ++T  +RK+ ++DW +R SV+A+++++++
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1010  RLLKRYGYPPDKTPKAVEIVMEQAKLMCQN  1039
             + L +Y YPPDK+  AVE+++ QA ++ ++
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

58) Thein_1571 in NC_015681


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  852 bits (3226),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 543/1058 (52%), Positives = 779/1058 (74%), Gaps = 40/1058 (3%)

Query  1     MAESEVESAALAWLESLGWQIKHGPEIAPGEPFAERDDYQEVILPQRLKDALARLNPELP  60
             ++E ++E  +L+W+ + GW++ HGP+IAP+   + R  +++V+L   ++  L  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    IEALDEAFRKLVNPPGATVEARNRAFHRMLVDGVTVEYRREDGSIAGAQARVIDFDDSEN  120
                +DE + ++  P ++ +   N+AFH++L+ GV VEY+R+D  I ++ A ++DF+++EN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDT-ALLMDFNHPEN  120

Query  121   NDFLAVNQFTVTEGRHTRRPDIVLFVNGLPLVIIELKNPADEEATIWTAYQQLQTYKAEL  180
             N F  VNQ +++  ++ RRPD++ ++NGLP+ +IELK+P+D +A IW+A++QLQTYK E+
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   PTLFAFNELLVISDGLEARMGTLTAGREWFKPWRTISGERVEDEGVL--QLEVLLKGVFD  238
             + LF  NE LVISDG +AR+G+LTA+ E+F PW+TIS E  +D  +L  QLE +++G F+
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNE--DDKPLLEHQLENVVNGFFN  238

Query  239   LERFLELIRDFMVYEDDGGRLSKKVAGYHQFHAVRVAVRETLRAAALAKDEGLRVREEIG  298
              E +L+ IR F+++E DG RL KK+A+YHQFHAVR AV  T+ A++   +  L +R +I 
Sbjct  239   RELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAST---GKFLPLRSNI-  294

Query  299   RYEVRGQGGRPGDRRIGVVWHTQGSGKSLTMVFYAGRIIREPAMQNPTVVVLTDRNDLDD  358
                      +PG ++ GVVWHTQGSGKS++M  YAG++++++ M+NPT+VV+TDRNDLD+
Sbjct  295   ---------KPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDG  345

Query  359   QLFGVFSRCQELLRQEPVQAKSRAHLRELLS-REAGGIIFTTIQKFFPDEKGDQHPLLSS  417
             QL+  F + ++LL+QEP QA +R +LRE+L+ RE+GGIIFTT+QKF P +  + HP L+ 
Sbjct  346   QLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNL  405

Query  418   RRNIVVIADEAHRSQYDFID----------GFARHIRDALPNASFIAFTGTPIELEDRNT  467
             R NIVVI+DEAHRSQY++            G+A+H+RDALPNASF++FTGTP+  ED++T
Sbjct  406   RDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDT  465

Query  468   RAVFGDYISIYDIQRAVEDGATVPIYYESRlaklalpkelkpkIDeefeevtereeverk  527
             RAVFGDY+SIYDIQ AV+DGATVPIYYESRLAKL L  E    +  + +++ E EE ++K
Sbjct  466   RAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQK  525

Query  528   eklktkWAQLEAIVGAEPRLRMIAKDIVKHFERRLEALDGKGMIVCMSRRICVDLYNQII  587
             EK K  W++LE +VG+EPR++ +A D+VKHF  R  +++GK+MIV MSR ICV LYN ++
Sbjct  526   EKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALV  585

Query  588   HLRPDWHHEDDDKGVIKVVMTGSASDPPEWQPHIRNKERREFLARRFRDPNDPLKLVIVR  647
              LRP+WH ED +KG IK++MTGSASD  + QPHI NK+ +  L  RF+D NDPLK+VIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  648   DMWLTGFDCPSLHTMYIDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYIGLARELKQALA  707
             DMWLTGFD P  HTMYIDKPMRGH LMQAIARVNRVF+DKPGGLVVDYIG+A ELKQAL 
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  708   VYTESGGKGRTALDQEEAVAVMQEKYEICCDLF------HGFDWSAWKTGTPEERLALLP  761
              YT+S GKG+T++D  +A AV+ EK ++  ++F       GFD SA      +    +L 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLL  761

Query  762   AAQEHILAQPDGKDRFVKAVLELSKAFALAVPHEEALRIRDDVAFFQAVRSALVKRAPLD  821
              A + IL+  DGK R+   VL L+KA +L    +EA  ++ ++AF+ AV+ A++K +  D
Sbjct  762   DAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  822   AR-PQEELDYALRQLVDRAVDPEGVVDIFAAAGLKKPDISILSEEFLAEIQDMPQKNLAV  880
              + +Q E +  L +++D A+ + GV D+FA AGL KP+I++LS+EFL E+++MPQ+NLAV
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  881   ELLRKLLQGEIRTRRRKNVVQARRFSEMLERALRRYQNRAIEAAQVIEELIALAREMRKS  940
             ELL KLL++ I++R  +NVVQ +++S+ L   L RY+NRAIE+AQVIEELI +A+E + +
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  941   DrrgeelglseeeVAFYDALAANESAVEVLGDKTLRKIAQELVRLVRENVTVDWAQRENV  1000
               R++ LGL+ +E+AFYDALA NESAV  LGD TL+K+A E+   +R + TVDW  RE+V
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1001  RAYLRVLVKRTLRKYGYPPDKQEEATQTVLKQAEVLGG  1038
             RA LR+LV++TL KY YPPDK  +A + +LKQAEV++ 
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

59) ASU2_03875 in NC_018690


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  850 bits (3218),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 517/1068 (49%), Positives = 770/1068 (73%), Gaps = 51/1068 (4%)

Query  3     INENTIEQACIQALQGLGWAYTFGSEIERERAE-------EVVLKSVLANAITRLNPQLP  55
             ++E+ +EQ  +  + G GW    G++I  +  +       +V L++++ + +  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  56    SNVVNDVVALVCKGDITDLTERNQQFYRLLREGVQVEYRENDEQKIDIVRLIDFQNVHNN  115
             +++ +++++ + + +  D+   N+ F +LL  GV VEY+ +D    D   L+DF++ +NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  116   QFDVVNQFTIKGVKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAEIS  175
             +F VVNQ +I G K  RRPDVIC++NGLP+ V+ELK+P   +AD+  AF+Q+QTYK EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  176   DLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVPFENELAGLVQGLMSPE  235
             DLF+ N+ALVISDG +ARIGSLTA+ +RF PW+ + +   + + +E++L  +V+G+ + E
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL-LEHQLENVVNGFFNRE  240

Query  236   NLLNYVQNFVLFERSESGLLIKKIAAYHQFYGVNEAVESTLLAASEQ----------GDR  285
              LL+Y++ F+LFE S++  LIKKIAAYHQF +V EAV++T++A++ +          G +
Sbjct  241   LLLDYIRYFILFE-SDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  286   KIGVMWHTQGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATFSAGKDLIR  345
             K GV+WHTQGSGKSISM  YA+KL  ++ + NPTIVVVTDRNDLDGQL++TF  +KDL++
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  346   QTPIQADGREALRTELAKRETGGIIFTTIQKFGLHEGENQHPILNDRHNIIVISDEAHRS  405
             Q P QA  R+ LR  LA RE+GGIIFTT+QKF+  +GE+ HP LN R+NI+VISDEAHRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  406   QYGFSQHLAMGTQSATYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIY  465
             QYG+S  L    + ++Y+ GYAKH+R+ALPNASF+GFTGTP+S EDKDT+AVFG YVSIY
Sbjct  420   QYGLSATLD---KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  466   DIQDAVEDGATVPIVYEARQIPIN-ESQDFKNAVREADDLFSDDEQSYSFRLR------E  518
             DIQDAV+DGATVPI YE+R   ++ + +++     + DDL  D+E     + +      E
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  519   KLIGADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVVLYDKIIALRPEWHSDNL  578
             KL+G++ R+ ++A DLVKHF  R A M+GKAMIVAMSR+ICV LY+ ++ALRPEWHS+++
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  579   NEGAIKIVMTGSASDPDHFQPHIYGNQEKKSLEKRFKDPSDPFKLVIVRDMWLTGFDAPC  638
             + G IKI+MTGSASD +H+QPHIY +Q KK LE RFKD +DP+K+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  639   CNTMYIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGK  698
             C+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+G+ +ELK A   YT+++GK
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGK  713

Query  699   GEMTQDIEQIKLKFLECLDIVRGMFASPVSGQIFPLFDALKIHDEMALFEQILTAANHIL  758
             G+ T D  +    +LE LD+++GMFA   ++  F  + A+  + +  L    L AAN IL
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQHVL----LDAANYIL  768

Query  759   SLDQQNPVDDKAKDKTPRKNRFLQAVRLAKKGYGLCGSLPEVQVYQRELAFIDAVRAMLA  818
             +LD+              K+R+++ V   +K+ +LC++L E +  Q+ELAF+ AV+  + 
Sbjct  769   GLDDG-------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAII  815

Query  819   K-REPNSTVNPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEKVKNSR  877
             K    +   + ++++  L  +L++A+ A G  D+FAL   D+PNI +LS++FLE V++  
Sbjct  816   KLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  878   HQALWLEAIQRYLQAEIKEKGASNLSVQKDFETRLKEAMNKYRNQNltlleildellAMG  937
             ++ L +E +++ L+  I  +  +N+  +K +  RL+  + +Y N+ +   ++++EL+ M+
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  938   KEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDEVLKNLAMTITEKIRQSATIDW  997
             KEF   +AR++ LGL P EIAFYDALA+NESAVRELGDE LK+LA+ +T ++R+S+T+DW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  998   QFKDSVRAKMRIEIRRALRLFKYPPDKQVEAVEFVLRQAEVIADELSS  1045
             Q ++SVRA++RI +R++L  +KYPPDK ++AVE++L+QAEV+++  ++
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

60) hsdR3 in NC_009053


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  848 bits (3211),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1068 (49%), Positives = 771/1068 (73%), Gaps = 51/1068 (4%)

Query  3     INENTIEQACIQALQGLGWAYTFGSEIERERAE-------EVVLKSVLANAITRLNPQLP  55
             ++E+ +EQ  +  + G GW    G++I  +  +       +V L++++ + +  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  56    SNVVNDVVALVCKGDITDLTERNQQFYRLLREGVRVEYRENDEQKIDIVRLIDFQNVHNN  115
             +++ +++++ + + +  D+   N+ F +LL  GV VEY+ +D    D   L+DF++ +NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  116   QFDVVNKFTIKGLKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAEIS  175
             +F VVN+ +I G K  RRPDVIC++NGLP+ V+ELK+P   +AD+  AF+Q+QTYK EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  176   DLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVSFENELAGLVQGLMSPE  235
             DLF+ N+ALVISDG +ARIGSLTA+ +RF PW+ + +   + + +E++L  +V+G+ + E
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL-LEHQLENVVNGFFNRE  240

Query  236   NLLNYVQNFVLFERSESGQLIKKIAAYHQFYGVNEAVESTLLAASEQ----------GDR  285
              LL+Y++ F+LFE S++ +LIKKIAAYHQF +V EAV++T++A++ +          G +
Sbjct  241   LLLDYIRYFILFE-SDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  286   KIGVMWHTQGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATFSAGKDLIR  345
             K GV+WHTQGSGKSISM  YA+KL  ++ + NPTIVVVTDRNDLDGQL++TF  +KDL++
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  346   QTPIQADGREALRVELAKRETGGIIFTTIQKFGLQEGENEHPILNDRQNIIVISDEAHRS  405
             Q P QA  R+ LR  LA RE+GGIIFTT+QKF+  +GE+ HP LN R+NI+VISDEAHRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  406   QYGFTQHLSMGSQSAAYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIY  465
             QYG++  L    + +AY+ GYAKH+R+ALPNASF+GFTGTP+S EDKDT+AVFG YVSIY
Sbjct  420   QYGLSATLD---KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  466   DIQDAVEDGATVPIVYEARQIPIN-ESQDFQTAVQEADDLFSDDEQSYSFRLR------E  518
             DIQDAV+DGATVPI YE+R   ++ + +++++   + DDL  D+E     + +      E
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  519   KLMGADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVALYDKIIALRPEWHSDNL  578
             KL+G++ R+ ++A DLVKHF  R A M+GKAMIVAMSR+ICV LY+ ++ALRPEWHS+++
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  579   NEGAIKIVMTGSASDPDHFQPHIYGNQEKKTLEKRFKDPNDPLKLVIVRDMWLTGFDAPC  638
             + G IKI+MTGSASD +H+QPHIY +Q KK LE RFKD NDPLK+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  639   CNTMYIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGK  698
             C+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+G+ +ELK A   YT+++GK
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGK  713

Query  699   GEMVNDIEKIKLKFLECLDIVRGMFASPVSGQIFPLFDVLKIHDEMALFEQILTAANHIL  758
             G+   D       +LE LD+++GMFA   ++  F  +  +  + +  L    L AAN IL
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQHVL----LDAANYIL  768

Query  759   SLDQQNPVDDKAKDKTPRKNRFLQAMRLAKKGYGLCGSLPEVQAYQRELAFIDAVRAMLA  818
             +LD+              K+R+++ +   +K+ +LC++L E ++ Q+ELAF+ AV+  + 
Sbjct  769   GLDDG-------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAII  815

Query  819   K-REPNSTANPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEQVKNSR  877
             K    +   + ++++  L  +L++A+ A G  D+FAL   D+PNI +LS++FLE+V++  
Sbjct  816   KLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  878   HKALWLEAIQRYLQAEFKEKGVSNLSVQKDFETRLKEAMNKYRNQNltlleildellAMG  937
             ++ L +E +++ L+  +  +  +N+  +K +  RL+  + +Y N+ +   ++++EL+ M+
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  938   KEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDDVLKNLAMTITEKIRQSATIDW  997
             KEF   +AR++ LGL P EIAFYDALA+NESAVRELGD+ LK+LA+ +T ++R+S+T+DW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  998   QFKDSVRAKMRIEIRRALRLFKYPPDKQAEAVEFVLKQAEVIADELSS  1045
             Q ++SVRA++RI +R++L  +KYPPDK  +AVE++LKQAEV+++  ++
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

61) Calni_0580 in NC_014758


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  842 bits (3188),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 506/1063 (48%), Positives = 768/1063 (73%), Gaps = 37/1063 (3%)

Query  18    ISETEIENFAINLLKSQGYDYLFGGDIAPDGENPLRKSFEDVILFDRLKAALERINTNLP  77
             +SE ++E++++  + +QG + L G DIAPDG NPLR SF+DV+L   ++  LE +N +LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  78    QNAINDAIKQLTQIHTPDLIANNEIFHRMLTEGVKVLYQKDGIERGDIVWLIDFKNPENN  137
              + +++ I ++T+ ++PD++ +N  FH++L  GV V Y++D+    D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  138   DFLVVNQFTVIENRKNKRPDIVIFINGLPLLVIELKNPADENATIKSAYNQIQTYKQTIA  197
              F VVNQ ++   ++ +RPD++ +INGLP+ VIELK+P+D NA I +A+NQ+QTYK+ I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  198   SLFTYNEILVISDGLKAKMGSLSAGYDRFMYWKTDDGTKEDSHLVSQLETMIKGLLNKET  257
              LF  NE LVISDG +A++GSL+A+ +RF+ WKT     + + L  QLE +++G++N+E 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  258   LIDYIRFFILFektkkedekeQTIIQMTKKIAGYHQYYAVNKAVESTIRAIGRNTSIVRE  317
             L+DYIR+FILFE   K         ++ KKIA+YHQ+ AV  AV++TI A          
Sbjct  242   LLDYIRYFILFESDGK---------RLIKKIAAYHQFHAVREAVNATIVA----------  282

Query  318   DPATYGLPDVKTQPEGDKKAGVVWHTQGSGKSLSMLFYTGKIIQ--TINNPTIVVITDRN  375
               + + LP       G KKAGVVWHTQGSGKS+SM  Y+GK++Q   +NNPTIVV+TDRN
Sbjct  283   STGKF-LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRN  341

Query  376   DLDDQLFDTFASATQILRQEPVQATSREHLKELLKI-DSGGVVFTTIHKFWP-ENGNIYE  433
             DLD+QL+ TF  A ++L+QEP QA++R++L+E+L   +SGG++FTT++KF P +  +   
Sbjct  342   DLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHP  401

Query  434   TLSYRDNIIVIVDEAHRTQYGFKAKVDKNSGDIKYGFAKYLRDALPNATYIAFTGTPIEK  493
             +L+ RDNI+VI DEAHR+QYG+ A +DK+ G  KYG+AK +RDALPNA++++FTGTP+  
Sbjct  402   ALNLRDNIVVISDEAHRSQYGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSS  460

Query  494   TDRNTPAVFGNYIDIYDISNAVEDGSTVPIYYESRLVKIDLTEEG-RKLIKEYEEELDEK  552
              D++T AVFG+Y+ IYDI +AV+DG+TVPIYYESRL K+DL +E    L  + ++ +++ 
Sbjct  461   EDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDE  520

Query  553   GFSELEKTKAKWTKLEALVGAKPRIKEVAKDIVSHFESRLEVMDGKGMIVTISRKTAANL  612
                + EKTK+ W++LE LVG+ PRIK+VA D+V HF +R   M+GK+MIV++SR     L
Sbjct  521   ETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRL  580

Query  613   YKEIVNLRPDWHSEELKKGKIKVVMTTSSSDEPEVSKFYLTKEERRILADRFKDPEDELK  672
             Y+ +V LRP+WHSE++ KG IK++MT S+SD  ++      K+ ++ L  RFKD +D LK
Sbjct  581   YNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLK  640

Query  673   LVIVVDMWLTGFDVPCLHTMYIDKPMKGHTLIQAIARVNRVYNDKTGGLIVDYIGIASDL  732
             +VIV DMWLTGFD PC HTMYIDKPM+GH L+QAIARVNRV++DK GGL+VDYIGIA++L
Sbjct  641   IVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANEL  700

Query  733   KDALSFYAESGGKGDPVKLQEKAISIMLEKLEVVRDMFY------GFDYKRFFTADTSQK  786
             K+AL  Y++S GKG+       A++++LEKL+V+++MF       GFDY  F   + +Q 
Sbjct  701   KQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQ-  757

Query  787   LNIILEAQDFILGLENGKKRYIDAVVALSKAFSIAVPHPKAMEVKEEVAFFQAVKSGLIK  846
              +++L+A ++ILGL++GKKRY+D V+AL+KA S+      A  ++ E+AF+ AVK ++IK
Sbjct  758   -HVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIK  816

Query  847   FNTNEEQ-AAENYETVIKQIVDKAIYSKGVIDIFDAAGLKKPEISILSDEFLEEIKGMKH  905
             + T + + +  + ++++ +I+D+AI + GV D+F  AGL KP+I++LSDEFLEE++ M +
Sbjct  817   LTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQ  876

Query  906   KNLAIETLKKLINDQIKGRIKINLVKSKSLMKSLEDLIKKYNNKLLTAAQVIDELIKLAK  965
             +NLA+E L KL+ND I +R + N+V+ K     L  ++ +YNN+ + +AQVI+ELI++AK
Sbjct  877   RNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAK  936

Query  966   EIKESDKEPQEMGLSDYEYAFYCAVAENESAKQLMGKEKLRELATVLYKKVKENTTIDWT  1025
             E++ +    + +GL+  E AFY A+AENESA + +G E L+ LA  +  +++ +TT+DW 
Sbjct  937   EFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQ  996

Query  1026  IRESARSKLKVIVKRTLRQYGYPPDMQELATETVLKQAELIAS  1068
             +RES R++L+++V++TL +Y YPPD    A E +LKQAE++++
Sbjct  997   VRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

62) LFE_0359 in NC_017094


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  838 bits (3173),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1048 (50%), Positives = 743/1048 (71%), Gaps = 35/1048 (3%)

Query  4     LTESDLEQIVLGWFGELGYTILHGPEIAPEASLSERSSYSDPLLPAHVQIALSRLNPSLP  63
             L+E DLEQ+ LGWF+  G  +LHGP+IAP++  + R S+ D +L +  +  L  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    PEALDDAFRKLTRIDSPTLIQRNHAFHRFLVEGIPVEYRTQDRIVSDSARLFDLADLENN  123
             +  +D+ + ++TR +SP ++  N AFH++L+ G+PVEY+ +D+++ D+A L D+ + ENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DWLVVNQFTVVEGHHNRRPDIVVFVNGIPLGVIELKNPGDEKATIWSAFNQIQTYKEEIP  183
                VVNQ ++    + RRPD++ ++NG+P++VIELK+P+D +A IW+AFNQ+QTYK+EI+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   SLFAFNELLVISDGYEARIGSLSSNKERFAPWRTIEGEEEARM-RPPIEVLTKGVFRKEH  242
              LF  NE LVISDGY+ARIGSL+++ ERF PW+TI  E++  +    +E + +G F +E 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   LLDLVSHFVVFEAETDGSLIKKLAGYHQFHAVNKAVETTLTASRPK----------GDRR  292
             LLD +  F++FE++    LIKK+A+YHQFHAV  AV++T+ AS  K          G ++
Sbjct  242   LLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  293   IGVIWHTQGSGKSLTMVFYAGKVVLHPAMENPTLLVLTDRNDLDGQLFGTFSRCQEILRQ  352
              GV+WHTQGSGKS++M  YAGK++ ++ M+NPT++V+TDRNDLDGQL+ TF + +++L+Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  353   TPVQADARQRLRELLRV-ASGGVVFTTIQKFFPDPERDGDTFPRLSDRRNIVVIADEAHR  411
              P QA  R++LRE+L    SGG++FTT+QKF   P  + ++ P L+ R NIVVI+DEAHR
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKF--APLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYD----------FMDGFARHMRDALPNASFIGFTGTPVELSDRNTKAIFGDYISVYDI  461
             SQY+          +  G+A+HMRDALPNASF+GFTGTPV   D++T+A+FGDY+S+YDI
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  462   QRAVDDGATVPIYYESRLARLDLPEAEKPHIDQefeevteteeeerkekLKSKWAALEAV  521
             Q AVDDGATVPIYYESRLA+LDL + E   +  + +++ E EE ++KEK K+ W+ LE +
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  522   VGTEKRIGLIAKDIVDHFEKRLEALDGKAMIVGMSRRICLDLHKALITLRPEWYDKDDTK  581
             VG+E RI  +A D+V HF  R  +++GKAMIV+MSR IC+ L +AL++LRPEW   D  K
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  582   GILKVVMTGSATDPVEWQEHIRNKPRREKLANRFRNPNDPFRIVIVRDMWLTGFDAPSLH  641
             G +K++MTGSA+D  + Q HI NK  + +L  RF++ NDP++IVIVRDMWLTGFDAP  H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYLDKPMRGHGLMQTIARVNRVFKDKPGGLIVDYLGIAHELKTAMATYTQSGGSGKPTL  701
             TMY+DKPMRGH LMQ+IARVNRVFKDKPGGL+VDY+GIA+ELK A+ TYT+S G G+ T+
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  702   DQDDAVAALLKHYEICCGLF------HGFDWSSGKQSPEKRLSLLPFAQDHILSQENGQK  755
             D  DA A LL   ++  G+F       GFD S+  ++P+    LL  A + IL+ ++G+K
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH--VLLD-AANYILGLDDGKK  775

Query  756   RLAKAVSDLSKAFALAVPHPRGIEIRDDVRFFQEVNAVLTKSGPSSGR-DPGDMDHAIRQ  814
             R    V  L+KA +L      +  ++ ++ F+  V+  + K   +  +   ++ +  + +
Sbjct  776   RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSR  835

Query  815   IVSGAIVSEGVIDIFEAAGLMRPDLSILSEEFLADVRNMPQKNLAVELLRKLLDNEIKTR  874
             I+  AIV+ GV D+F  AGL +P++++LS+EFL +VR+MPQ+NLAVELL KLL++ I +R
Sbjct  836   ILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR  895

Query  875   SRKNVVLSRSFSEMLEKTLRAYHNRAIETVQVIEELITLAGEIRKAEKRGEDLGLSEDEV  934
             + +NVV  + +S+ L   L  Y+NRAIET QVIEELI +A E++ A  R++ LGL+ DE+
Sbjct  896   TNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEI  955

Query  935   AFYDALETNDSAVKILGDKVLCEIARELVQTIRNNVTVDWSIREDRRAHIKRLVKRILKK  994
             AFYDAL  N+SAV+ LGD  L  +A E+   +R++ TVDW +RE  RA+++ LV++ L K
Sbjct  956   AFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLK  1015

Query  995   NGYPPDKQEKATETVLEQAETLCQDWVA  1022
               YPPDK   A E +L QAE + + W A
Sbjct  1016  YKYPPDKALDAVELILKQAEVVSNSWTA  1043

63) VFMJ11_B0055 in NC_011185


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  836 bits (3166),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/1045 (51%), Positives = 749/1045 (72%), Gaps = 28/1045 (2%)

Query  3     ITEEMLEDHCMVWFSNLGYQTLHGGDLEPTGKAPERQSLSDVVLKPRLKKSLMKINPHLP  62
             ++E+ LE+  + WF+  G + LHG D+ P GK P R S+ DV L+P ++K L  +NPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63    EDCIDTAIDTLL-TTVPSVAHANHTFHRQLIDGIQVEYEDSEGRPKGDKVYLVDFTNQNN  121
                +D  I  +     P +  +N +FH+ L+ G+ VEY   +++   D   L+DF + +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPEN  120

Query  122   DWLALRQFSV--DGVTNGEKDNRRPDIVVFLNGLPISVLELKSPADEKADVWKAYNQIQT  179
             +     +F+V  +   +G K+ RRPD++ ++NGLPI+V+ELKSP+D +AD+W A+NQ+QT
Sbjct  121   N-----RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQT  175

Query  180   YKNVLRDLFVFNESVIISDGTEAYIGSLTADRDRFTPWRTIDGSRDDSEDTLALEVMVRG  239
             YKN + DLF+ NE+++ISDG +A IGSLTAD +RF PW+TI    D +     LE +V G
Sbjct  176   YKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNG  235

Query  240   FFNQELLLDYLQYFISFECDNEKVIKKIAGYHQFHGVRAAIESTI----------RATRH  289
             FFN+ELLLDY++YFI FE D  ++IKKIA+YHQFH+VR A+++TI          R+   
Sbjct  236   FFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIK  295

Query  290   DGDQRCGVFWHTQGSGKSLSMGFYSAKLMAAPEMRNPTIVVVTDRNDLDEQLFETFSINA  349
              G ++ GV WHTQGSGKS+SM  Y++KL+  +EM NPTIVVVTDRNDLD QL+ TF    
Sbjct  296   PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAK  355

Query  350   ELLRETPIQAKDRHHLKELLDNRQSGGIFFTTMQKFSPDEGESRYPALTERNNIVVMADE  409
             +LL++ P QA +R++L+E+L  R+SGGI+FTT+QKF+P +GE   PAL  R+NIVV++DE
Sbjct  356   DLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDE  415

Query  410   AHRSQYGLKARVDSKTGEMKYGYAQHLRDALPNAGFIGFTGTPVEMEDRDTRVVFGQDVS  469
             AHRSQYGL A +D K G  KYGYA+H+RDALPNA+F+GFTGTPV  ED+DTR VFG+ VS
Sbjct  416   AHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVS  474

Query  470   VYDIEQAQRDGATKKLYYESRLIKLDMDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAKNA  529
             +YDI++A  DGAT  +YYESRL KLD++     E L   VDDLV + + D++ +TK+  +
Sbjct  475   IYDIQDAVDDGATVPIYYESRLAKLDLNHE-ELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   ALEALVCAEDRIDRLARDLLTHFGKREEVTLTKAMAVCISREACVQLYDKLRELKPEWHD  589
              LE LV +E RI ++A DL+ HF+ R+     KAM V +SR+ CV+LY+ L  L+PEWH 
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   EDPEKGCMKVIMTGTSSDPEkyqkhihkkpiqkkiakrikDPDSELKLVIVCDMWLTGFD  649
             ED EKG +K+IMTG++SD E  Q HI +K  +K++  R+KD +  LK+VIV DMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   APCLNTMYIDKPLKGHNLMQAIARVNRVFRDKEGGLIVDYLGIAPELRSAVRNYTAS-GQ  708
             APC +TMYIDKP++GHNLMQAIARVNRVF+DK GGL+VDY+GIA EL+ A++ YT S G+
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   GEPTIDLAQALEVTMTKLDVCRGIM------HGFDYSDYKTNTLGLLAKAMNHILSLEDG  762
             G+ TID  +A+ V + KLDV +G+        GFDYS +  N   +L  A N IL+L+DG
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLDDG  773

Query  763   KKRFDKAALSLSKAFSLCSCMDEAKDIKEEIAFFETLRAAIKKTTTSKQRMSDENVQTAL  822
             KKR+    L+L+KA SLCS +DEAK ++ E+AF+ +++ AI K TT+ ++ S+ + ++ L
Sbjct  774   KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLL  833

Query  823   RQVVSESIVSGDIVDVFESAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDEIK  882
              +++ ++IV+ ++ DVF  AGL+KPNI++L D+FL EV  + ++NLAVE+L KL++D I 
Sbjct  834   SRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIH  893

Query  883   TRTVKNAVAYKTFSEMLRNSLDKYRNRSVETSVVIEELIKLAKELRDSADRGDDLDLTKE  942
             +RT +N V  K +S+ LR  L +Y NR++ET+ VIEELI++AKE++ +  R+D L+L  +
Sbjct  894   ARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPD  953

Query  943   ELAFFDALLANESAKEAMKQEDILFIARELAAEIRKSAQPDWTKRKNLRSRMRIKIKQIL  1002
             E+AF+DAL  NESA   + +E +  +A E++A++RKS+  DW  R ++R+R+RI +++ L
Sbjct  954   EIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTL  1013

Query  1003  KRTGYPPDCQEDAVELVLQQAELVN  1027
              +  YPPD   DAVEL+L+QAE+V+
Sbjct  1014  LKYKYPPDKALDAVELILKQAEVVS  1038

64) Cylst_5220 in NC_019757


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  835 bits (3163),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 537/1052 (52%), Positives = 762/1052 (73%), Gaps = 30/1052 (2%)

Query  5     FTESTVEQATLDWLEELGYTPLNGAEIAPDIPHSERQEYNDVVLINRLQTALEIINPQIP  64
             ++E  +EQ +L+W+   G   L+G++IAPD  ++ R  ++DV L   ++  LE +NP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    FDAIQDTIKKITRTETPVLEENNRRFHQYLTEGVDVEYQQHGQTQYKKLWLIDFDEIDNN  124
                +++ I +ITR E+P +  +N+ FH+ L  GV VEY+++++       L+DF++ +NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  125   DWLAVNQFTVIENKNNRRPDVIIFINGLPIAVIELKNAVKEYATIKGAFNQLQTYKKDIP  184
                 VNQ ++   K+ RRPDVI +INGLPIAVIELK++    A I +AFNQLQTYK++I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  185   CLFSYNEILVISDVVNARVGTLTADWERFMPWRSVDGENIFPKGQSELETIIKGIFNKTT  244
              LF  NE LVISD  NAR+G+LTAD ERF+PW+++  E+  P  + +LE +++G+FN+  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  245   ILDILQYFIVFEVDQDTIIKKIAGYHQYHAVNKAITATI----------KATRLNGDQKV  294
             +LD ++YFI+FE D   +IKKIA+YHQ+HAV  A+ ATI          ++    G +K 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  295   GVVWHTQGSGKSLTMAFYAGKLIQEPDMRNPTLVILTDRNDLDDQLFNTFSSCADLLRQT  354
             GVVWHTQGSGKS++M  YAGKL+Q+++M NPT+V++TDRNDLD+QL+ TF    DLL+Q 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  355   PVQAENRESLTALLQV-AAGGIVFTTIQKFAPETGNE-YPELSPRRNIVLIADEAHRSQY  412
             P QA NR+ L  +L    +GGI+FTT+QKFAP  G++  P L+ R NIV+I+DEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  413   GLKAKVVQKDDAAYIKYGYAKYLRDAIPNASFVGFTGTPISQTDKNTAALFGNYIDIYDI  472
             GL A +    D+AY KYGYAK +RDA+PNASF+GFTGTP+S  DK+T A+FG+Y+ IYDI
Sbjct  422   GLSATL--DKDGAY-KYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  473   QRAVEDEATVKIYYEGRLAKLDLEPSERPKIDPefeeitedeeltskeKLKSRWARLEAL  532
             Q AV+D ATV IYYE+RLAKLDL+  E   + ++ +++ EDEE   KEK K+ W+RLE L
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  533   VGAEKRIAQIAKDIVAHFENRTAAPELRDGKGMIVCMSRRICADLYNAITQLKPEWHSED  592
             VG+E RI Q+A D+V HF  R A+    +GK+MIV MSR IC  LYNA+  L+PEWHSED
Sbjct  539   VGSEPRIKQVAADLVKHFAARNAT---MNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  593   DSQGFLKVVMTGSAADEEKMQPHIRNKKRRKDLAKRFKKADDPFKLVIVRDMWLTGFDAP  652
               +G +K++MTGSA+D E +QPHI NK+ +K L  RFK  +DP+K+VIVRDMWLTGFDAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  653   SLHSLYVDKPMQGHNLMQAIARVNRVFKDKPGGLVVDYLGIAEQLKEALKDYTES-DRGE  711
               H++Y+DKPM+GHNLMQAIARVNRVFKDKPGGLVVDY+GIA++LK+ALK YT+S ++G+
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  712   TGIPTELALAVLQEKYEVVQGMY------HGFNYQKFFTGKPTERVSMIPAALNHILGLE  765
             T I +  A+AVL EK +V++GM+       GF+Y  F   +  ++V + +A  N ILGL+
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHVLLDAA--NYILGLD  771

Query  766   DGKQRYIKAVTELSQAFALVSSTDEAIAIRDEVGFFQAIKAAMVKHTTINGK-SPEDVDA  824
             DGK+RY+  V  L++A +L S+ DEA +++ E++F+ A+K A++K TT + K S  + ++
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  825   AVRQIVSKAIASDQVIDIFASAGLNKPNIAVLSDEFLEEVRGLPYRNVALEALQKLINDQ  884
              + +I+ +AI +  V D+FA AGL+KPNI++LSDEFLEEVR +P RN+A+E L+KL+ND 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  885   IKVSSRKNLIQSRSFREMLENTIKRYQNRAIETAQVINEFIELVKAMREAQKRGENLGLT  944
             I   + +N++Q + + + L   + RY+NRAIETAQVI+E+I++ K  + A  R++ LGL 
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  945   EDETAFYDALEVNDSAVISLGDNTLKAIARDLVKAIRSNLTIDWTVKENvraklrvtvkr  1004
              DE AFYDAL  N+SAV  LGD+TLK +A ++   +R + T+DW V+E+VRA+LR+ V++
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1005  llkkYGYPPDKQEKATATVLEQAELLCKDWVA  1036
              L KY YPPDK   A   +L QAE++ + W A
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

65) DCF50_p1408 in NC_018867


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  832 bits (3150),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1044 (49%), Positives = 757/1044 (73%), Gaps = 30/1044 (2%)

Query  9     ESELEQATLEWFEELNYDIIFAPDIAPDGEYAEREDYSDVILQERLKEALARINPTLPED  68
             E +LEQ +L WF     +++ +PDIAPDG  + R  + DV+L+  ++  L  +NP LP  
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  69    ALEDAFRRILIPQSPSLLMNNKAFQKMVTDGVDVSYRQKDGTIKYTQAKVFDFEKVNNND  128
              +++ + RI  P+SP ++++NKAF+ ++  GV V Y+ +D+ +    A + DF+  +NN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPENNR  122

Query  129   WVAANQFTVVENRVDKRPDVVVFVNGIPLVVIELKNASNEDVDISDGYNQLQTYKMSIPS  188
                 NQ ++   +  +RPDV+ ++NG+P+ VIELK++S+ + DI  ++NQLQTYK  I+ 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  189   LFTYNSFMVTSDGINARAGTLTSDEDRFMAWRTIEGDEVASLSIPQLEVLIKGMFDKERF  248
             LF  N  +V SDG NAR G+LT+DE+RF++W+TI  ++  +L   QLE +++G F++E +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  249   LDIIKQFILFQTDGSDTFKILAGYHQYHAVNKAVESTE----------RATMETGDRRIG  298
             LD I+ FILF++DG   +K +A+YHQ+HAV  AV++T           R+ +  G ++ G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  299   VVWHTQGSGKSLSMVFYAGKLVISEELENPTIVIITDRNDLDDQLFTTFAKSKDLLRGEP  358
             VVWHTQGSGKS+SM  YAGKL+   E++NPTIV++TDRNDLD+QL+TTF ++KDLL+ EP
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  359   QQAEDRGHLRELLNNRTSGGIIFTTIHKFAPEDKGDSVPVLTDRKNVIVMADEAHRSQYG  418
             QQA +R++LRE+L  R SGGIIFTT++KFAP D  ++ P L  R N++V++DEAHRSQYG
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYG  422

Query  419   FGADVVKSETEASVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRAVFGDYIDVYDMT  478
             ++A +   + +++ KYGYAK MRD+LPNAS++GFTGTPV   DK+TRAVFGDY+ +YD+ 
Sbjct  423   LSATL---DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  479   RAVQDETTVKIFYESRIAKLDLPEDLKPKIDTEYDEITEYQEYNQKEKLKSRWSRLEAIV  538
              AV+D +TV I+YESR+AKLDL ++    + ++ D++ E +E +QKEK K+ WSRLE +V
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  539   GAEKRIQVVAKDIVEHFEKRQAAQEYEGGKAMIVAMSRRIAIDLYKEIVLLRPDWHSDEL  598
             G+E RI+ VA D+V HF  R+A+ +   GKAMIVAMSR I + LY+ +V LRP+WHS+++
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  599   MEGKIKVVMTGASSDPADWQKFIGTKATRKALDKRMKDKNDELQLVIVRDMWLTGFDVPS  658
               G IK++MTG++SD  + Q  I  K T+K L+ R KD ND L++VIVRDMWLTGFD P 
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  659   MHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKEALSKYTESDKKT-T  717
              HTMYIDKPM+GHNLMQAIARVNRVFK+K GGLVVDYIGIA++LK+AL  YT+S  K  T
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQT  716

Query  718   GVDTDVAAELLLEKHDLIKELL------HGHDYSKFFTGSAREKMQAIVETMDYIIGLRE  771
              +D+  A  +LLEK D+I  ++       G DYS F      +  + ++++ +YI+GL +
Sbjct  717   TIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLDD  772

Query  772   DRKNDYIKLVTELTRAYSLCATTDIAERLNVEIGFHKSVKAGIVKMITDNTKKKTNSQLD  831
             ++K  Y+ +V  L +A SLC+T D A  L+ E++F  +VK +I+K+ T + KK ++S+ +
Sbjct  773   GKKR-YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD-KKFSQSEKN  830

Query  832   SELNQLISKSISSDEVIDILEAVGLQKPNIAILSDEFLEEVKGMKQKNLAVELLNRLLKG  891
             S L++++ ++I +  V D++   GL+KPNI++LSDEFLEEV+ M Q+NLAVELL++LL++
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  892   SIKAFSKRNLVQSKKFSELLENALKKYQNRTIETTQIIMELIELAKEINEAKKRGENSGL  951
             +I A ++ N+VQ KK+S+ L   L +Y+NR+IET+Q+I ELI++AKE++ A  R++  GL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  952   TADELAFYDALSFDEAAKGELSDDILKQIARDLTDSLKRNMSVDWNIRSSVQSkmkmiik  1011
              +DE+AFYDAL+ +E+A  EL+D+ LK++A ++T  L+++ +VDW++R SV+++++++++
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1012  rllkkYGYPQDKRDQATETVLEQA  1035
             + L KY YP DK  +A E +L QA
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQA  1034

66) Desdi_0311 in NC_019903


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  828 bits (3136),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1068 (47%), Positives = 757/1068 (71%), Gaps = 48/1068 (4%)

Query  7     ESHLEEATLEWFEELGYEIVFAPDIAPDGDYPERGDYGDITLNDRLKEALQRINPRMRPD  66
             E +LE+ +L WF   G E++ +PDIAPDG  P R  + D+ L   ++  L+ +NP++ + 
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  67    ALEDAFRQITIPQSPSLIMNNKAFQKMITDGIDVQVKQADASYRTEKVYVFDFEKPLNNE  126
              +++ + +IT P+SP ++++NKAF+ ++  G+ V+ K+ D   + +   + DF+ P NN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIH-DTALLMDFNHPENNR  122

Query  127   FMVANQFTFIEHGVEKRPDVIAFVNGIPLVVMELKSASDENVDITDAYNQLQTYKMTIPS  186
             F V NQ ++      +RPDVI ++NG+P+ V+ELKS+SD N DI  A+NQLQTYK  I+ 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  187   LFTYNSFLVTSDGVNARAGTLTSDEDRFMAWRTIDGETTAPLSIPQLEVLIKGMFQRDRF  246
             LF  N  LV SDG NAR G+LT+DE+RF++W+TI  E   PL   QLE +++G F+R+ +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  247   LDIIRHFVLFQSDSQDTIKILAGYHQYHAVNKAIESTE----------RATQESGDRRIG  296
             LD IR F+LF+SD++  IK +A+YHQ+HAV  A+++T           R+   +G ++ G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  297   VIWHTQGSGKSLSMVFYAGKLVINEGLENPTIVIITDRNDLDDQLFGTFLKSKGILRSTP  356
             V+WHTQGSGKS+SM  YAGKL+ +  ++NPTIV++TDRNDLD+QL+ TF ++K++L+  P
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  357   VQATDRTHLRDLLNNRTSGGIIFTTIHKFAPVAKEAKEECELDRAAEATALYRTEDMVLT  416
              QA++R +LR++L  R SGGIIFTT++KFAP+  E  +                    L 
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHP------------------ALN  404

Query  417   DRKNVIVMADEAHRSQYGFEAEIMKGDDEANVKYGYAKYMRDSLPNASYIGFTGTPVELT  476
              R N++V++DEAHRSQYG+ A +   D ++  KYGYAK MRD+LPNAS++GFTGTPV   
Sbjct  405   LRDNIVVISDEAHRSQYGLSATL---DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSE  461

Query  477   DKNTRAVFGDYIDVYDMTRAVEDGTTVKIFYESRIAKLELPEELKPKVDTEYDEITEYQE  536
             DK+TRAVFGDY+ +YD+  AV+DG+TV I+YESR+AKL+L +E    + ++ D++ E +E
Sbjct  462   DKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEE  521

Query  537   YTQKEKLKSKWARLEAIVGASERVKQIAKDIVEHFEKREQAQENAGGKAMIVAMSRRIAI  596
               QKEK K+ W+RLE +VG+  R+KQ+A D+V HF  R+ + +   GKAMIVAMSR I +
Sbjct  522   TDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICV  578

Query  597   DLYQEIVTIRPEWHSDDLMAGKIKVVMTGASSDPAEWQKFIGKKASRETLAKRMKDKNDE  656
              LY+ +V++RPEWHS+D+  G IK++MTG++SD  + Q  I +K ++  L  R KD ND 
Sbjct  579   RLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDP  638

Query  657   LKLVIVRDMWLTGFDVPSMHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAE  716
             LK+VIVRDMWLTGFD P  HTMYIDKPM+GHNLMQAIARVNRVFK+K GGL+VDYIGIA+
Sbjct  639   LKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIAN  698

Query  717   NLKEALAQYTESDKKT-TGVDTEVAGQELLIRHDLIKELL------HGHDYSKFFTGKPS  769
             +LK+AL  YT+S  K  T +D+  A   LL + D+I  ++       G DYS F     +
Sbjct  699   ELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----EN  754

Query  770   EKMQAIVETMDYIIGLREDRKNDYIKLVTEMARAYSLCATTDIAESLNVEVGFHKAVKAS  829
             +  + ++++ +YI+GL +++K  Y+ +V  + +A SLC+T D A +L+ E++F  AVK +
Sbjct  755   NPQHVLLDAANYILGLDDGKKR-YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVA  813

Query  830   LVKMISNDNRKKTTTQLDSELNQLISKSISSNEVIDILSSVGLSKPNIAILSEEFLEEVK  889
             ++K+ + D +K + ++ +S L++++ ++I +  V D+++  GL KPNI++LS+EFLEEV+
Sbjct  814   IIKLTTTD-KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVR  872

Query  890   GMKQKNLAVELLNRLLKGGIKTFSRRNLVQSKKFSELLDAAIRKYQNRAIETTQVIMELI  949
              M Q+NLAVELL++LL++GI + +  N+VQ KK+S+ L A + +Y+NRAIET+QVI ELI
Sbjct  873   EMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELI  932

Query  950   ELAKQISEAEKRGESTGLTPDELAFYDALADNDSAREIMGDEILKQIARDLTQSIKKNIS  1009
             ++AK++  A  R+++ GL PDE+AFYDALA+N+SA   +GDE LK++A ++T  ++K+ +
Sbjct  933   QMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTT  992

Query  1010  VDWAIRESVQAKMKMTIKRLLKKYGYPPDKTAKAVDIVMEQTKLMCQN  1057
             VDW +RESV+A++++ +++ L KY YPPDK+  AV++++ Q+ ++ ++
Sbjct  993   VDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

67) CGSHiEE_04165 in NC_009566


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  823 bits (3114),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/1075 (48%), Positives = 770/1075 (72%), Gaps = 53/1075 (4%)

Query  7     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  66
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  67    PESAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYTQNGEQKIEMVRLVDFEHWGN  126
             P S  D ++   T+++  D+VV N++F  LL  GV VEY +++    +   L+DF+H  N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  127   NRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDE  186
             NRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  187   IAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLL  246
             I++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L++++NG++
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLENVVNGFF  237

Query  247   QPKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVEPTIFATSE----------Q  296
             +   LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++            
Sbjct  238   NRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  297   GDKRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKD  356
             G K+ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +KD
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  357   LIKQTPQQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEA  416
             L+KQ PQQ  +RDQLR++LA  E G+++FTT+QKFA  + E   P LN R+NI+VISDEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  417   HRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  475
             HRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSIY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  476   DLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGEE-NPKLRLR------E  527
             D+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+EE + K + +      E
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  528   KLFGSEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNI  587
             KL GSE+R+ ++A D+V+HFA RN  +++KAM+V  SR+ICV LYN ++ LRPEWHS+++
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  588   NEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  647
             + G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  648   CNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGK  707
             C+TMY+DKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+EL +A + YT+S+GK
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGK  713

Query  708   GKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL  767
             G+ +    D F  + E L+VI+++FA    +  FD  +    +NP+++L+    AAN IL
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHVLLD---AANYIL  768

Query  768   SLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQEIAFYD  827
             +LD    DG                KK ++     ++K+  LC+TL E  P ++E+AF  
Sbjct  769   GLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  828   AVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEFL  885
             AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+LLS+EFL
Sbjct  809   AVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFL  868

Query  886   QTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEIL  945
             + V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+ +   +++
Sbjct  869   EEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVI  928

Query  946   DELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAKEITETLR  1005
             +EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA E+T  LR
Sbjct  929   EELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLR  988

Query  1006  KSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIAEDLTG  1060
             KS T+DWQ +E+VRA++RILV+++L +YKYPPDK  +A+  ++KQAE +++  T+
Sbjct  989   KSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

68) hsdR in NC_017452


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  823 bits (3117),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/1075 (48%), Positives = 770/1075 (72%), Gaps = 53/1075 (4%)

Query  1     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  60
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYTQNGEQKIEMVRLVDFEHWGN  120
             P S  D ++   T+++  D+VV N++F  LL  GV VEY +++    +   L+DF+H  N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDE  180
             NRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   IAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLL  240
             I++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L++++NG++
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLENVVNGFF  237

Query  241   QPKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSE----------Q  290
             +   LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++            
Sbjct  238   NRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  291   GDKRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKD  350
             G K+ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +KD
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  351   LIKQTPQQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEA  410
             L+KQ PQQ  +RDQLR++LA  E G+++FTT+QKFA  + E   P LN R+NI+VISDEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  411   HRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  469
             HRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSIY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  470   DLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGEE-NPKLRLR------E  521
             D+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+EE + K + +      E
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  522   KLFGSEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNI  581
             KL GSE+R+ ++A D+V+HFA RN  +++KAM+V  SR+ICV LYN ++ LRPEWHS+++
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  582   NEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  641
             + G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  642   CNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGK  701
             C+TMY+DKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+EL +A + YT+S+GK
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGK  713

Query  702   GKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL  761
             G+ +    D F  + E L+VI+++FA    +  FD  +    +NP+++L+    AAN IL
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHVLLD---AANYIL  768

Query  762   SLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQEIAFYD  821
             +LD    DG                KK ++     ++K+  LC+TL E  P ++E+AF  
Sbjct  769   GLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  822   AVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEFL  879
             AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+LLS+EFL
Sbjct  809   AVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFL  868

Query  880   QTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEIL  939
             + V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+ +   +++
Sbjct  869   EEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVI  928

Query  940   DELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAKEITETLR  999
             +EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA E+T  LR
Sbjct  929   EELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLR  988

Query  1000  KSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIAEDLTG  1054
             KS T+DWQ +E+VRA++RILV+++L +YKYPPDK  +A+  ++KQAE +++  T+
Sbjct  989   KSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

69) hsdR3 in NC_014920


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  821 bits (3107),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/1073 (49%), Positives = 774/1073 (73%), Gaps = 55/1073 (5%)

Query  1     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKLNPQL  60
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYTLNGEQKIEMVRLVDFEHWGN  120
             P S  D ++   T+++  D+VV N+AF  LL  GV VEY  ++    +   L+DF+H  N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRKSADLLQAFNQFETYKDE  180
             NRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   IAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLL  240
             I++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L++++NG++
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLENVVNGFF  237

Query  241   KPEDLLDYIRYFVLFEWDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEK----------  290
             + E LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++ K          
Sbjct  238   NRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  291   GDRRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKD  350
             G ++ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +KD
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  351   LIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEA  410
             L+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R+NI+VISDEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  411   HRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  469
             HRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSIY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  470   DLQDAVEDGATVPIIYEARQIKLA-ENANHDELFAEIDELLEGEE-NPKLRLR------E  521
             D+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+EE + K + +      E
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  522   KLLGSEARLHDLAVDFVQHFAKRNEVADSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNI  581
             KL+GSE+R+ ++A D+V+HFA RN   ++KAM+V  SR+ICV LYN ++ LRPEWHS+++
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  582   NEGAIKIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  641
             + G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  642   CNTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGK  701
             C+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+ELK+A + YT+S+GK
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGK  713

Query  702   GKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTF-YVQTVLEKDNPNELLMAIRFAANHI  760
             G+ +    D F  + E L+VI+++FA    +  F Y  + +E +NP+++L+    AAN I
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY--SAFE-NNPQHVLLD---AANYI  767

Query  761   LSLDQLPFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQEIAFY  820
             L+LD    DG                KK ++     ++K+  LC++L E  P ++E+AF 
Sbjct  768   LGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  821   DAVRAILTR--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEF  878
              AV+  + +    +K  + +E++ LL +++++++ + GV D+F L    +P+I+LLS+EF
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  879   LQTVKNSPTKNLWVTAMERYLASEIKAKSGANLTLQKDFEQRLKEALNQYHNHNLTVVEI  938
             L+ V++ P +NL V  +E+ L   I A++  N+  +K + +RL+  L +Y+N+ +   ++
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  939   LDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAKEITETL  998
             ++EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA E+T  L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  999   RKSVTIDWQYKEAVRAKMRILVKRTLQRYKYPPDKQEEAVTYVIKQAEEIAED  1051
             RKS T+DWQ +E+VRA++RILV++TL +YKYPPDK  +AV  ++KQAE +++ 
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

70) PARA_15870 in NC_015964


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  820 bits (3106),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 519/1076 (49%), Positives = 775/1076 (73%), Gaps = 56/1076 (5%)

Query  1     MLNENDIEQLTLKHLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKFNPQL  60
             ML+E+D+EQL+L  + + GWE   G D++ +  +  R  + +V +   +R  +  +NP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGNLVVRNQAFYKLLRDGVRVEYTLNGEQKIEMASLVDFEHVGN  120
             P S  D ++   T+++  ++VV N+AF  LL  GV VEY  ++    + A L+DF+H  N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NCFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDE  180
             N F  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   IAELFVYNKALIISDGIAARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLL  240
             I++LF+ N AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L++++NG++
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLENVVNGFF  237

Query  241   KPEDLLDYIRYFVLFERNSSGKTIKKIAAYHQYYGVNEAVDSTLFATSEK----------  290
             + E LLDYIRYF+LFE ++  + IKKIAAYHQ+ +V EAV++T+ A++ K          
Sbjct  238   NRELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  291   GDRRIGVMWHTQGSGKSISMLFYAGKLLTQPELKNPTIVVVTDRNDLDGQLFQTFSSGKD  350
             G ++ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +KD
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  351   LIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSNIIVISDEA  410
             L+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R NI+VISDEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  411   HRSQYGFTQKLHK-GKFQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  469
             HRSQYG++  L+K G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSIY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  470   DLQDAVEDGATVPIVYEAR--QIRLNEKEHDELFKEIDDLLEEEQSPA--------LRLQ  519
             D+QDAV+DGATVPI YE+R  ++ LN+ E + L  ++DDL+E+E++           RL 
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRL-  535

Query  520   EKLLGSQARLADLAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLHPEWHSDN  579
             EKL+GS++R+ ++AAD+V+HFA RN  +++KAM+V  SR+ICV LYN ++ L+PEWHS++
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  580   INEGAIKIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAP  639
             ++ G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  640   CCNTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIAEKLKEATQQYTNSQG  699
             CC+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+ LK+A + YT+S+G
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKG  712

Query  700   KGKLTDNVIDVFFKMKEHLEFVRSLFATPVEGKTFDVQTALEKDDPKDLLVEIRFAANHI  759
             KG+ T +  D F  + E L+ ++++FA    +  FD  +A+E ++P+++L++   AAN I
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFE-NNPQHVLLD---AANYI  767

Query  760   LGLDRLPFEGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQEIAFY  819
             LGLD    +G                KK ++     ++K+  LC++L E  P ++E+AF 
Sbjct  768   LGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  820   DAVRAILTKRDQNGT--GSNERQILLKKLVNQAVYSEGVIDLFDLLEKPQPQINLLSEEF  877
              AV+  + K    +   + +E++ LL +++++A+ + GV D+F L    +P+I LLS+EF
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  878   LQTIKNSPTKNLWVSAVERYLASEIKAKSGANLTLQKDFEQRLKEALNQYHNHNLSVVEI  937
             L+ +++ P +NL V  +E+ L   I A++  N+  +K + +RL+  L +Y+N+ +   ++
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  938   LDELFKMSQDFQERlalgeklglkkeelaFYEALAQNQSARELMGDEVLSKLAKEITDTL  997
             ++EL++M+++FQ  +A ++ LGL+ +E+AFY+ALA+N+SA   +GDE L KLA E+T  L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  998   RRSVTIDWQYKEGVRAKMRILVKRALQRYKYPPDKQEEAVSYVIKQAEEIAEDLTA  1053
             R+S T+DWQ +E+VRA++RILV+++L +YKYPPDK  +AV  ++KQAE +++  TA
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

71) MmarC7_0017 in NC_009637


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  819 bits (3100),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/1047 (48%), Positives = 746/1047 (72%), Gaps = 28/1047 (2%)

Query  4     LCEDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPKVP  63
             L ED +EQ +L  + + G E++ GP+IAPDG +P R  + +V L + +R+ +  +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    EVAREDALRKVLRLENPNLLMNNEKFHEFIFKGIDVEYPIDGRVKGDKVYLLD-KNPLKN  122
                 ++ + ++ R E+P+++++N  FH++++ G+ VEY  D++V  D   L+D ++P +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
              F  VNQ +I   ++ RRPD++ ++NGLP++VIELK+P+  +A IW+A+NQ+QTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF  NE ++ISDG ++RIG+L+++ E+FLPWK+I    +      QL   + G F++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   FIDIIKNFIVFKKDGKDIIKVIAGYHQYFAANRAIEKTIEAVSG------------NRRC  290
             ++D I+ FI+F  DGK +IK IA+YHQ+ A   A++ TI A +G            +++ 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  291   GVVWHTQGSGKSLTMAFYAGKLAITPELKNPTIVVVTDRNDLDDQLFGTFASCIDVLKQT  350
             GVVWHTQGSGKS++M  YAGKL   +E++NPTIVVVTDRNDLD+QL+ TF    D+LKQ 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  351   PVQAKNAEDLKEQLKV-VSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQY  409
             P QA N ++L+E L    SGG+IFTT+QKF+  + +   P L+ R+NI+V++DEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  410   GLKARSVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDV  469
             GL A +++K+G  +  YG+AK +RDALPNASF+GFTGTP+  EDK TR++FG+Y+ IYD+
Sbjct  422   GLSA-TLDKDG--AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  470   RRAVADGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAI  529
             + AV DG TV IYYESR+AK++++++ L  L ++ +++ E EE  +KEK KG W++LE +
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  530   VGSNDRISNVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKL  589
             VGS+ RI +VA D+V+HF  R+ T++GKA++V MSR ICV LY+ ++ LRPEWH++D   
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  590   GVLKVIMTGSAADGTEWQKHIRTKGKRKELADHFKDSESEFKIAIVRDMWLTGFDVPCLH  649
             G +K+IMTGSA+D  + Q HI  K  +K L  +FKD +  +KI IVRDMWLTGFD PC H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  650   TLYIDKPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTY  709
             T+YIDKPM+GH LMQAIARVNRVF+DKPGGLVVDYIGIA++LK AL  YT S G G+ T 
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  710   DIEDAVNLMKSKYEAMKDFFY------GHDYSKFFNGTNIEKMDVIPETLEFILNQPDGK  763
             D  DA  ++  K + + + F       G DYS F N  +    +V+ ++ ++IL   DGK
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGK  774

Query  764   KRFVKLALELIKSYALSLPHEEAVKIREEVAFFTGVKAALYKNTEISGK-PEDELNSAIK  822
             KR+  + L L K+ +L    +EA  ++ E+AF+++VK A+ K T    K ++ E NS + 
Sbjct  775   KRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLS  834

Query  823   QIVSGAVRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRA  882
             +I+  A+ + G+ DVF+ AGL+KP+I++LS++FLE+V++M  +NLA+E L K+LND I+A
Sbjct  835   RILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHA  894

Query  883   KFKNNLLQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEE  942
             + +NN++QEKK+S+ +   + RY+N+AI++A VI+ELI +AKE++ A  R++ L L  +E
Sbjct  895   RTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDE  954

Query  943   LAFYDALSDNDSAQEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLR  1002
             +AFYDAL++N+SA   LG E L  +A E+T  LR+S ++DW+VRE+VRA LR+ +++ L 
Sbjct  955   IAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLL  1014

Query  1003  KYGYPPDKQQIAADLVLKQAETISKEW  1029
             KY YPPDK   A +L+LKQAE +S+ W
Sbjct  1015  KYKYPPDKALDAVELILKQAEVVSNSW  1041

72) NIS_1703 in NC_009662


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  819 bits (3102),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1067 (48%), Positives = 760/1067 (72%), Gaps = 41/1067 (3%)

Query  1     MLNENSVENFTIDLLKSQGYDYLYGGDIALDGENPLRDSFEDVILFDRLKTAIKKINPSL  60
             ML+E+ +E+++++ + +QG + L G DIA DG NPLR SF+DV+L   ++  +  +NP L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PQDAIDDAIKQITQINTPDLIANNEIFHRMLTEGVKVTYQKDGVQRGDIVWLVDFKNPQM  120
             P   +D+ I +IT+ ++PD++ +N  FH++L  GV V Y++D+    D   L+DF++P+ 
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NDFLVVNQFTVIENHKNKRVDIVLFINGLPLVVMELKNPTDSNANIKSAYNQLQNYKQTI  180
             N F VVNQ ++    + +R D++ +INGLP+ V+ELK+P+D NA+I +A+NQLQ YK+ I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   PTLFTYNEILIISDGLEAKMGSLSAGFDRFMAWKSADGKKEASHLVSQLETLIQGLLNKE  240
             + LF  NE L+ISDG +A++GSL+A+ +RF++WK+     + + L  QLE +++G++N+E
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   TLIDYIRFFILFEKKKKEDKGQITVQTIKKIAAYHQYYAVNKAIKSTLRAIGQNKSNFLV  300
              L+DYIR+FILFE   K        + IKKIAAYHQ+ AV  A+++T   I  + ++FL 
Sbjct  241   LLLDYIRYFILFESDGK--------RLIKKIAAYHQFHAVREAVNAT---IVASTGKFL-  288

Query  301   KEPPANYGLPDVKEQSEGDRKAGVVWHTQGSGKSLSMLFYAGKVIQTT--NNPTIVVITD  358
                      P   +   G +KAGVVWHTQGSGKS+SM  YAGK++Q +  NNPTIVV+TD
Sbjct  289   ---------PLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTD  339

Query  359   RNDLDDQLFNTFATASKLLRQEPVQAASREELKKLLMV-ESGGVVFTTIHKFWPDDGN-V  416
             RNDLD+QL+ TF  A  LL+QEP QA++R++L+ +L   ESGG++FTT++KF P DG+  
Sbjct  340   RNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQA  399

Query  417   YETLSTRDNIIVIVDEAHRTQYGFRGRVDKKSGEIKYGFAKYLRDALPNATYIAFTGTPI  476
               +L+ RDNI+VI DEAHR+QYG+ + +DK  G  KYG+AK +RDALPNA++++FTGTP+
Sbjct  400   HPALNLRDNIVVISDEAHRSQYGLSATLDK-DGAYKYGYAKHMRDALPNASFMGFTGTPV  458

Query  477   ESTDKNTPAVFGNYIDIYDIANAVEDGATVPIYYESRLVKIDITeegkklieeyeee-lD  535
              S DK+T AVFG+Y+ IYDI +AV+DGATVPIYYESRL K+D+ +E    +    ++ ++
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  536   ARGLSEIEKAKAKYSKIEALVGAKPRIKEIAKDIVSHFESRLEVMDGKGMIVTMTWHIAA  595
                  + EK+K+  S++E LVG+ PRIK++A D+V HF +R   M+GK+MIV+M+++I  
Sbjct  519   DEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICV  578

Query  596   NLYDEIIKLRPDWHSDELKKGKIKVVMTTSSSDEPHIARFYLTKEQRRTLADRFKDPQDE  655
              LY+ ++ LRP+WHS+++ KG IK++MT S+SD  H+      K+ ++ L  RFKD +D 
Sbjct  579   RLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDP  638

Query  656   LKLVIVVDMWLTGFDVPSLHTMYIDKPMKGHTLMQAIARVNRVYKDKTGGLIVDYIGIAS  715
             LK+VIV DMWLTGFD P  HTMYIDKPM+GH LMQAIARVNRV+KDK GGL+VDYIGIA+
Sbjct  639   LKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIAN  698

Query  716   DLKEALSFYSDSGGKGEPARLQEEAVKVMLEKLEVVRDMLY------GYDYKRYFDADTS  769
             +LK+AL  Y+DS GKG+ +    +A  V+LEKL+V+++M+       G+DY  +   + +
Sbjct  699   ELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNP  756

Query  770   QKLHIILEVEDFILGLENGKKRFIDAVTALSKAFSLAVPHSEAMKIKDEVAFFQAVKSRL  829
             Q  H++L+  ++ILGL++GKKR++D V AL+KA SL     EA  ++ E+AF+ AVK  +
Sbjct  757   Q--HVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAI  814

Query  830   IKFNIESENSF---DYATAIKQIVDKAVSSSGVIDIFDAAGLKKPDISILSDEFLEEIKE  886
             IK+   +++ F   +  + + +I+D+A+ ++GV D+F  AGL KP+I++LSDEFLEE++E
Sbjct  815   IKLTT-TDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVRE  873

Query  887   MKQKNLAIEALKKLINDEIKSRIKTNIVkskslkesleelIRKYNNRLLTAAEVIDELIH  946
             M Q+NLA+E L KL+ND I +R + N+V+ K   + L  ++ +YNNR + +A+VI+ELI+
Sbjct  874   MPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQ  933

Query  947   LAKEIKQSDKEPEELGLSDYEYAFYCAVADNESARELMGKEKLKELAAVLFQKVKENTTI  1006
             +AKE++ +    + LGL+  E AFY A+A+NESA   +G E LK LA  +  +++ +TT+
Sbjct  934   MAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTV  993

Query  1007  DWAIRESARAKLKVIIKRTLRQYGYPPDMQKLATQTVLEQAEALAND  1053
             DW +RES RA+L++++++TL +Y YPPD    A + +L QAE ++N 
Sbjct  994   DWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

73) Rhom172_1461 in NC_015966


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  818 bits (3098),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 527/1082 (49%), Positives = 770/1082 (72%), Gaps = 57/1082 (5%)

Query  6     LVEEDVEQMALDELQALGWQTAYGPDLAPESLRPERETYGDVVLKGRLREALERINPDRP  65
             L E+D+EQ++L+ + + GW+   GPD+AP++  P R ++ DV L+  +R  LE +NP+ P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  66    AVAIEEALRQVLTPESPALIENNRRFHQMLTDGVDVSWMGPERQQNGKVSLIDIQNLDNN  125
             A  ++E + ++  PESP ++ +N+ FH++L  GV V     ++  ++   L+D+++ +NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  126   DWLAVNQFTVIENKHERRPDIVLFVNGLPLVVIELKDPGTVQATLRAAFNQLQTYKQEIP  185
                 VNQ ++   K+ RRPD++ ++NGLP+ VIELK P+ V+A ++AAFNQLQTYK+EI+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  186   SLFTYNEILVISDGMQARFGTLTSGWDRFMPWRTIDGTDLYREPGNDKQSEGVVQPGMKT  245
              LF  NE LVISDG +AR+G+LT++ +RF+PW+TI          ++ +   +++  +  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTI----------SNEDDKPLLEHQLEN  231

Query  246   LIRGMFERRRFLDYVLNFITFEQVDEGTAGIAKKAAGYHQYHAVNQALASTLVACGIEAD  305
             ++ G F+R  +LDY+  FI FE   +G   + KK A+YHQ+HAV +A+ +T+VA      
Sbjct  232   VVNGFFNRELLLDYIRYFILFE--SDGKR-LIKKIAAYHQFHAVREAVNATIVAST----  284

Query  306   ASTLYARFQEAEAADPFAVREPKAEYRPKLGDRRVGVIWHTQGSGKSLSMVFYAGKVIRH  365
                  ++F        +++R   ++ +P  G ++ GV+WHTQGSGKS+SM  YAGK++++
Sbjct  285   -----GKF--------LPLR---SNIKP--GSKKAGVVWHTQGSGKSISMCCYAGKLLQQ  326

Query  366   PAMQNPTIVVITDRNDLDNQLFATFAANRQILRQTPVQAESRGHLRELLKV-AAGGVIFT  424
             + M+NPTIVV+TDRNDLD QL++TF   +++L+Q P QA +R++LRE+L    +GG+IFT
Sbjct  327   AEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFT  386

Query  425   TIQKFFPEKKGDTYPTLSERHNIVVIADEAHRSQYDFID----------GFARHMRDALP  474
             T+QKF P    ++ P+L+ R+NIVVI+DEAHRSQY++            G+A+HMRDALP
Sbjct  387   TVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALP  446

Query  475   NASFIGFTGTPIEKDDRNTRAVFGDYISIYDIQRAVEDGATVPIYYESRLARIELDEAEK  534
             NASF+GFTGTP+  +D++TRAVFGDY+SIYDIQ AV+DGATVPIYYESRLA+++L++ E 
Sbjct  447   NASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEEL  506

Query  535   PRLDeafeeiteteedevrrerLKSKWASLEALVGAEKRIRLVAKDLVEHWERRREAMLG  594
               L    +++ E EE + +    K+ W+ LE LVG+E RI+ VA DLV H   R  +M G
Sbjct  507   EALSSQVDDLVEDEETDQKEKT-KGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNG  565

Query  595   KGMIVCMSRRICVEMYRAITALRPDWHSDDDNRGKIKVVMTGSASDPSDWQPHIRNKQRR  654
             K+MIV MSR ICV +Y A+ ALRP+WHS+D ++G IK++MTGSASD  + QPHI NKQ +
Sbjct  566   KAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTK  625

Query  655   DLIARRFKDPDDELELVIVRDMWLTGFDAPPLHTMYIDKPMNGHNLMQAIARVNRVFRDK  714
               +  RFKD +D L +VIVRDMWLTGFDAP  HTMYIDKPM GHNLMQAIARVNRVF+DK
Sbjct  626   KRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDK  685

Query  715   PGGLVVDYLGIADSLKKALAVYAESGGRGKAAIDQAEAVAVMKEKYEVVCGIL------H  768
             PGGLVVDY+GIA+ LK+AL  Y++S G+G+++ID  +A AV+ EK +V+ G++       
Sbjct  686   PGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDP  745

Query  769   GFDYRRLLAAAPDERLQGIAEAMDFILGREDGKKRYlqavaalskafalaVPHEEALAIR  828
             GFDY    +A  ++  + + +A ++ILG +DGKKRY++ V AL+KA +L    +EA +++
Sbjct  746   GFDY----SAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQ  801

Query  829   DEVGLFQEIRAALIKATVSSaerapeeveaavrQLVSRAISGCEVVDIFAAAGLEKPDIS  888
              E++++  ++ A+IK T +    +  E ++ + +++  AI +  V D+FA AGL+KP+I+
Sbjct  802   KELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIG  861

Query  889   ILSDEFLEEVRSLPQKNLAVETLKKLLQDEIQVRLRKNVVQSRAFSELLQRALNKYHNRA  948
             +LSDEFLEEVR +PQ+NLAVE L KLL+D I+ R  +NVVQ + +S+ L+  L +Y+NRA
Sbjct  862   LLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRA  921

Query  949   IEAAQVIEELIAIARQVREATRRGEKLGLSEDEVAFYDALAANESAVEVLGDETLKEIAQ  1008
             IE+AQVIEELI +A++ + A  R++ LGL+ DE+AFYDALA NESAV  LGDETLK +A 
Sbjct  922   IETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAI  981

Query  1009  VLVESVRKSVTVDWNRRESARAQLRVLVKRILRKYGYPPDKQEQAVELVLSQTEVLCGEW  1068
              +   +RKS TVDW+ RES RA+LR+LV++ L KY YPPDK  +AVEL+L Q+EV+   W
Sbjct  982   EVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

Query  1069  VA  1070
              A
Sbjct  1042  TA  1043

74) MmarC6_0040 in NC_009975


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/1047 (48%), Positives = 747/1047 (72%), Gaps = 28/1047 (2%)

Query  4     LCEDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPNVP  63
             L ED +EQ +L  + + G E++ GP+IAPDG +P R  + +V L + +R+ +  +NP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    EVAREDALRKVLRLENPNLLMNNEKFHEFIFKGIDVEYPIDGRVKGDKVYLLD-KDPLKN  122
                 ++ + ++ R E+P+++++N  FH++++ G+ VEY  D++V  D   L+D ++P +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
              F  VNQ +I   ++ RRPD++ ++NGLP++VIELK+P+  +A IW+A+NQ+QTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF  NE ++ISDG ++RIG+L+++ E+FLPWK+I    +      QL   + G F++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   FIDIIKNFIVFKKDGKDIIKVIAGYHQYFAANRAIEKTIEAISG------------NRRC  290
             ++D I+ FI+F  DGK +IK IA+YHQ+ A   A++ TI A +G            +++ 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  291   GVVWHTQGSGKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCIDVLKQT  350
             GVVWHTQGSGKS++M  YAGKL   +E+ NPTIVVVTDRNDLD+QL+ TF    D+LKQ 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  351   PVQAKNAEDLKEQLKV-VSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQY  409
             P QA N ++L+E L    SGG+IFTT+QKF+  + +   P L+ R+NI+V++DEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  410   GLKARSVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDV  469
             GL A +++K+G  +  YG+AK +RDALPNASF+GFTGTP+  EDK TR++FG+Y+ IYD+
Sbjct  422   GLSA-TLDKDG--AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  470   RRAVADGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAI  529
             + AV DG TV IYYESR+AK++++++ L  L ++ +++ E EE  +KEK KG W++LE +
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  530   VGSNDRISKVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKL  589
             VGS+ RI +VA D+V+HF  R+ T++GKA++V MSR ICV LY+ ++ LRPEWH++D   
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  590   GVLKVIMTGSAADGTEWQKHIRSKGKRKELAEHFKNPESEFKIAIVRDMWLTGFDVPCLH  649
             G +K+IMTGSA+D  + Q HI +K  +K L  +FK+ +  +KI IVRDMWLTGFD PC H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  650   TLYIDKPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTY  709
             T+YIDKPM+GH LMQAIARVNRVF+DKPGGLVVDYIGIA++LK AL  YT S G G+ T 
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  710   DIEDAVNLMKSKYEAMKDFFY------GHDYSKFFNGTNIEKMDVIPETLEFILNQPDGK  763
             D  DA  ++  K + + + F       G DYS F N  +    +V+ ++ ++IL   DGK
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGK  774

Query  764   KRFVKLALELIKSYALSLPHEEAVKIREEVAFFTGVKAALYKNTEISGK-PEDELNSAIK  822
             KR+  + L L K+ +L    +EA  ++ E+AF+++VK A+ K T    K ++ E NS + 
Sbjct  775   KRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLS  834

Query  823   QIVSGAVRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRA  882
             +I+  A+ + G+ DVF+ AGL+KP+I++LS++FLE+V++M  +NLA+E L K+LND I+A
Sbjct  835   RILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHA  894

Query  883   KFKNNLLQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEE  942
             + +NN++QEKK+S+ +   + RY+N+AI++A VI+ELI +AKE++ A  R++ L L  +E
Sbjct  895   RTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDE  954

Query  943   LAFYDALSDNDSAKEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLR  1002
             +AFYDAL++N+SA   LG E L  +A E+T  LR+S ++DW+VRE+VRA LR+ +++ L 
Sbjct  955   IAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLL  1014

Query  1003  KYGYPPDKQQIAADLVLKQAETISKEW  1029
             KY YPPDK   A +L+LKQAE +S+ W
Sbjct  1015  KYKYPPDKALDAVELILKQAEVVSNSW  1041

75) K649_10280 in NC_021081


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1044 (50%), Positives = 758/1044 (73%), Gaps = 41/1044 (3%)

Query  21    GWQVVHGPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGS  80
             GW+V+HGP+IAPD  ++ R  + +V L   +R  L  LNP LPA  +++   ++T+PE++
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  81    DLIQRNRALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTL  140
             D++  N+A+H+LL++GV VEY+ +D+ +    A ++DF++P NN      +F+VV++ ++
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPENN------RFTVVNQVAI  131

Query  141   QRAPSMQRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVP  200
               +  +     RRPDV+ ++NGLP+AV+ELK+++D +A IW+A +QLQTY+ EI+ LF+ 
Sbjct  132   SGTKQL-----RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFIC  186

Query  201   NAVLVISDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLV  260
             N  LVISDG +AR+G + A+ E+F PW+T++ +        +L+ V++G F    +LD +
Sbjct  187   NEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYI  246

Query  261   RDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVQETLRAA----LALREGRGGQSGDRRIGV  316
             R FI+FE DG  RLIKK+A+YHQFHAV+ AV+ T+ A+    L+LR     ++G ++ GV
Sbjct  247   RYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNI--KPGSKKAGV  303

Query  317   VWHTQGSGKSLTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHELLRQPPV  376
             VWHTQGSGKS++M  YAG++++++ M+NPT+VV+TDRNDLD+QLY+TF +  +LL+Q P 
Sbjct  304   VWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQ  363

Query  377   QAESRAHLRELLSV-QSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYD-  434
             QA +R +LRE+L+  +SGG++FTT+QKF P +  + HP L+ R NIVVI+DEAHRSQY+ 
Sbjct  364   QASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGL  423

Query  435   ---------FIDGFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAVE  485
                      +  G+A+HMRDALPNASF+GFTGTP+  +D +TRAVFGDY+SIYDIQ AV+
Sbjct  424   SATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVD  483

Query  486   DGATVPIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAER  545
             DGATVPIYYESR AKLDL +E    +  + +++ E+EE ++KEK K+ W++LE +VG+E 
Sbjct  484   DGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEP  543

Query  546   RLRLVAKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIKI  605
             R++ VA D+V+HF  R  +++GKAMIV MSR ICV LY  +V LRP+WH +D +KG IKI
Sbjct  544   RIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKI  603

Query  606   VMTGSASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYLD  665
             +MTGSASD  + QPHI NK  +  L  RF+D +D++K+VIVRDMWLTGFDAP  HTMY+D
Sbjct  604   IMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYID  663

Query  666   KPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEEA  725
             KPMRGH LMQAIARVNRVF+DKPGGLVVDY+G+A ELK AL TYT+S G G+T+++  +A
Sbjct  664   KPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDA  723

Query  726   VALMREKYEICRGLFY------GFDWSRWVTGTPAERLSLLPAAQEHILAQENGKDRLLR  779
              A++ EK ++ +G+F       GFD S            +L  A + IL+ ++GK R + 
Sbjct  724   FAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGKKRYFD  779

Query  780   AARELSQAFALAVPHEEALRIRddvaffqavqavLAKRAPGQAR-PEEELEQAVRQIIAR  838
                 L++A +L    +EA  ++ ++AF+ AV+  + K +  + + ++ E +  + +I+  
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  839   AVAPEGVVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKN  898
             A+ + GV D+FA AGL +P+I++LSDEFL EVR MPQ+NLAVELL+KLL++ I+AR ++N
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  899   LVQARSFAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYD  958
             +VQ + +++ L   + RY+NRAIE+AQVIEELI +A++ + A AR++ LGL+ DE+AFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  959   ALEANDSAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYP  1018
             AL  N+SAV+ LGD TL+ +A E+   +R++ T+DW +RE+VRA+LR+LV++TL KY YP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1019  PDKQEKATQTVLEQAALLSAQWAA  1042
             PDK   A + +L QA ++S  W+A
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

76) Mrub_2450 in NC_013946


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  816 bits (3088),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1044 (50%), Positives = 758/1044 (73%), Gaps = 41/1044 (3%)

Query  21    GWQVVHGPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGS  80
             GW+V+HGP+IAPD  ++ R  + +V L   +R  L  LNP LPA  +++   ++T+PE++
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  81    DLIQRNRALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTL  140
             D++  N+A+H+LL++GV VEY+ +D+ +    A ++DF++P NN      +F+VV++ ++
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPENN------RFTVVNQVAI  131

Query  141   QRAPSMQRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVP  200
               +  +     RRPDV+ ++NGLP+AV+ELK+++D +A IW+A +QLQTY+ EI+ LF+ 
Sbjct  132   SGTKQL-----RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFIC  186

Query  201   NAVLVISDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLV  260
             N  LVISDG +AR+G + A+ E+F PW+T++ +        +L+ V++G F    +LD +
Sbjct  187   NEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYI  246

Query  261   RDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVQETLRAA----LALREGRGGQSGDRRIGV  316
             R FI+FE DG  RLIKK+A+YHQFHAV+ AV+ T+ A+    L+LR     ++G ++ GV
Sbjct  247   RYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNI--KPGSKKAGV  303

Query  317   VWHTQGSGKSLTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHELLRQPPV  376
             VWHTQGSGKS++M  YAG++++++ M+NPT+VV+TDRNDLD+QLY+TF +  +LL+Q P 
Sbjct  304   VWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQ  363

Query  377   QAESRAHLRELLSV-QSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYD-  434
             QA +R +LRE+L+  +SGG++FTT+QKF P +  + HP L+ R NIVVI+DEAHRSQY+ 
Sbjct  364   QASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGL  423

Query  435   ---------FIDGFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAVE  485
                      +  G+A+HMRDALPNASF+GFTGTP+  +D +TRAVFGDY+SIYDIQ AV+
Sbjct  424   SATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVD  483

Query  486   DGATVPIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAER  545
             DGATVPIYYESR AKLDL +E    +  + +++ E+EE ++KEK K+ W++LE +VG+E 
Sbjct  484   DGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEP  543

Query  546   RLRLVAKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIKI  605
             R++ VA D+V+HF  R  +++GKAMIV MSR ICV LY  +V LRP+WH +D +KG IKI
Sbjct  544   RIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKI  603

Query  606   VMTGSASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYLD  665
             +MTGSASD  + QPHI NK  +  L  RF+D +D++K+VIVRDMWLTGFDAP  HTMY+D
Sbjct  604   IMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYID  663

Query  666   KPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEEA  725
             KPMRGH LMQAIARVNRVF+DKPGGLVVDY+G+A ELK AL TYT+S G G+T+++  +A
Sbjct  664   KPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDA  723

Query  726   VALMREKYEICRGLFY------GFDWSRWVTGTPAERLSLLPAAQEHILAQENGKDRLLR  779
              A++ EK ++ +G+F       GFD S            +L  A + IL+ ++GK R + 
Sbjct  724   FAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGKKRYFD  779

Query  780   AARELSQAFALAVPHEEALRIRddvaffqavqavLAKRAPGQAR-PEEELEQAVRQIIAR  838
                 L++A +L    +EA  ++ ++AF+ AV+  + K +  + + ++ E +  + +I+  
Sbjct  780   VVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDN  839

Query  839   AVAPEGVVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKN  898
             A+ + GV D+FA AGL +P+I++LSDEFL EVR MPQ+NLAVELL+KLL++ I+AR ++N
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  899   LVQARSFAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYD  958
             +VQ + +++ L   + RY+NRAIE+AQVIEELI +A++ + A AR++ LGL+ DE+AFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  959   ALEANDSAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYP  1018
             AL  N+SAV+ LGD TL+ +A E+   +R++ T+DW +RE+VRA+LR+LV++TL KY YP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1019  PDKQEKATQTVLEQAALLSAQWAA  1042
             PDK   A + +L QA ++S  W+A
Sbjct  1020  PDKALDAVELILKQAEVVSNSWTA  1043

77) BTH_I2740 in NC_007651


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  816 bits (3091),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1060 (48%), Positives = 758/1060 (72%), Gaps = 44/1060 (4%)

Query  4     LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDGVVLKKRFEDAVARLNPGLP  63
             LSE  +EQ  L+ + + +  + +  DI+PDG  P R S ++V L+  F   +  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    LEARQDAARRVMQSELPSLLEENRRIHKLMIEGVDVEYYADDGTLTAGKVALINFEQPEQ  123
                 ++   R+ ++E P ++  N+ +H L++ GV VEY   D+ +  +   L++F++PE+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPEN  120

Query  124   NDWLAVSQFVVVAGHYNRRPDVVVFVNGLPLGVVELKAPGSGNATLVGAFNQLQTYKKQI  183
             N    V+Q  + +    RRPDV+ ++NGLP++V+ELK+P+  NA + +AFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PALFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTDVAPKGAPELSTLIEGVFEHR  243
             + LF  N  LV SDG  AR+GSL+AD ERF+PW+T    D  P    +L  +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RLLDLLCHFTAFGETGSGLAKVIAGYHQFHAVRHAVNSTVAASSPE----------GNKR  293
              LLD +  F  F   G  L K IA+YHQFHAVR+AVN+T+ AS+            G+K+
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   VGVIWHTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFSTFSMCRDLIRQ  353
              GV+WHTQGSGKS+ M  YAG+L++++ M NPT+VV+TDRNDLD+QL++TF   +DL++Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   TPVQAESREDLQKVLS-RASGGVIFTTLQKFGELAE-----PLTTRRNVVVIADEAHRSQ  407
              P QA +R++L+ +L+ R SGG+IFTT+QKF+ L       +L  R N+VVI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  408   YGFKAKVDTKTGEISYGFAKYMRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDIS  467
             YG+ A +D K G   YG+AK MRDALPNASF+GFTGTP+ ++D +T AVFG+Y+ +YDI 
Sbjct  421   YGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  468   RAVEDGATVPIYYESRLARIELDEDEKPKIDAEVEDLTEEDSEADQERFKKKWSTVETLV  527
              AV+DGATVPIYYESRLA+++L+++E   + ++V+DL E++   ++E+ K  WS +E LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  528   GSDKRLALVAKDMVAHFDDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNAG  587
             GS+ R+  VA D+V HF  R A+++GKAM+V MSR ICV+LY+ +V LRP+WHS D + G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  588   AIKIVMTGAASDPQEWQQHIGNKARRDQLAKRARDPKDPLKLVIVRDMWLTGFDAPCMHT  647
              IKI+MTG+ASD ++ Q HI NK  + +L  R +D +DPLK+VIVRDMWLTGFDAPC HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  648   MYVDKPMHGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYS-KNDQDNTGVD  706
             MY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK AL+ Y+  +++++T +D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  707   EAQAIAVMMEKYEVVRDMY------HGFDYASALTGTPQERLAMMAGAIEWLLDLQQRLA  760
               +A+AV++EK +V+++M+       GFDY SA+   PQ+   ++ +A + +L+L     
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYILGL-----  770

Query  761   AKEKTEGGKKNAHRRYQDAVlalskayslasasDEAREIREEVGFFQAIRAALVK-SATG  819
                  ++GKK    RY D VLAL+KA SL S+ DEA+ ++ E++F+ A++ A++K ++T+
Sbjct  771   -----DDGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  820   SGVTEQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQRMERKNLAL  879
                ++ E++  + +I+  A+V+T + D++A AG+  P+I++LSDEFL EV+ M ++NLA+
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  880   EALRKLINDGIRSRSKANVVQTRAFSERLEDAVARYHANAITTAEVLQELIKLAKDIRAA  939
             E L KL+NDGI++R++ NVVQ + +S+RL   + RY+  AI TA+V++ELI++AK+++AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  940   RKRGEESGLSDEEIAFYDALAENDSAVQMMGDDKLRLIAHELLVSLRENVSVDWAHRESA  999
               R++  GL+ +EIAFYDALAEN+SAV+ +GD+ L+ +A E+   LR + +VDW  RES 
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1000  RARMRVLVKRILRKYGYPPDLQYSAVQTVLQQAEALSSGW  1039
             RAR+R+LV++ L KY YPPD    AV+ +L+QAE +S++W
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

78) F7308_0305 in NC_015696


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  816 bits (3089),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/1056 (47%), Positives = 747/1056 (71%), Gaps = 45/1056 (4%)

Query  1     MKEDNIENYAIDLFKSEGYNYIYAPDVAPDTDNPIRATFSDVVLENLLRDKLLEINPQIQ  60
             + ED++E+ +++ F ++G + + +PD+APD  NP+R +F DV L  ++R +L  +NP++ 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    PNLIDDAIKKLLRTSSDELLADNELIHQYITQGIKVEYTKDGATRGEIVKLIDFDNSSNN  120
             ++L+D+ I ++ R  S +++  N  +H+ +  G+ VEY +D+    +   L+DF+++ NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   DFTVMNQFTIIENDNNKRPDLIIFVNGLPLVVIELKNATDENATIKSAFDQIRTYKATIP  180
              FTV+NQ +I    + +RPD+I ++NGLP+ VIELK+++D NA I +AF+Q++TYK  I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   SLFRYNAICVISDGLEAKAGTISADISRFMTWKSSDGIAESSKLVPQLETLILGMLNPIT  240
              LF  N   VISDG +A+ G+++AD  RF+ WK+     + + L  QLE ++ G +N   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   LLDLIKNFIVFEKDKKQDEKGQTQVFTIKKLAAYHQYYAVNKALERT----------LQA  290
             LLD I+ FI+FE D K+          IKK+AAYHQ+ AV  A++ T          L++
Sbjct  242   LLDYIRYFILFESDGKR---------LIKKIAAYHQFHAVREAVNATIVASTGKFLPLRS  292

Query  291   SHKDGDKKGGVVWHTQGSGKSLSMVFYTGKAV--LALNNPTIVVITDRNDLDDQLFDTFA  348
             + K G KK+GVVWHTQGSGKS+SM  Y+GK +    +NNPTIVV+TDRNDLD+QL+ TF 
Sbjct  293   NIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFC  352

Query  349   ASKSLLRQTPVQANTREDLKRLLKV-ESGGIVFTTIQKFQPEEGN-VYDTLSARDNIIVV  406
              +K LL+Q P QA+ R++L+ +L   ESGGI+FTT+QKF P +G+    +L+ RDNI+V+
Sbjct  353   QAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVI  412

Query  407   ADEAHRTQYGFSAKTVDDKDEQGNIIGKKTVYGFAKYLRDALPNATYLGFTGTPVEANDK  466
             +DEAHR+QYG+SA    DKD   +       YG+AK +RDALPNA+++GFTGTPV ++DK
Sbjct  413   SDEAHRSQYGLSATL--DKDGAYK-------YGYAKHMRDALPNASFMGFTGTPVSSEDK  463

Query  467   NTPMVFGDYVDIYDISQAIDDGATVPIYYESRLAKINLSEEGKE-LVKELDD--EIGELD  523
             +T  VFGDYV IYDI +A+DDGATVPIYYESRLAK++L++E  E L  ++DD  E  E D
Sbjct  464   DTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETD  523

Query  524   ESQKTKAKWTRLEALIGAENRIKEVANDIVNHFEARQEVCDGKAMIVAMSRRIAVRLYDE  583
             + +KTK+ W+RLE L+G+E RIK+VA D+V+HF AR+   +GKAMIVAMSR I VRLY+ 
Sbjct  524   QKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNA  583

Query  584   IIKLRPAWHDKDLDKGVIKVVMTASSSDGPEMEQHHTSKQQRRNLANRMKDTKDELKLVI  643
             ++ LRP WH  D++KG IK++MT+S+SD  +++ H  +KQ ++ L  R KD +D LK+VI
Sbjct  584   LVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVI  643

Query  644   VRDMWLTGFDAPSMHTLYIDKPMQGHNLMQAIARVNRVYKDKPAGLVVDYLGIASDLKKA  703
             VRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+A
Sbjct  644   VRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQA  703

Query  704   LSFYSDSGGKGDPAQTQEKAVSLMLEKLEVVSQMF------HGFDYEKYFDADTRQKLAI  757
             L  Y+DS GKG+ +     A +++LEKL+V+  MF       GFDY   F+ + ++   +
Sbjct  704   LKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQH---V  759

Query  758   ILEAEDFILGLENGKKRFVNEVTALSKAFAIAMPHDEAVDAKDEIAFFQAIKARLAKFDS  817
             +L+A ++ILGL++GKKR+ + V AL+KA ++    DEA   + E+AF+ A+K  + K+ +
Sbjct  760   LLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTT  819

Query  818   TGTGKTDEQIETAIRQVIDKALVTDQVIDIFDASGIKKPDISVLSDEFLAEVRDYKHKNI  877
             T+   ++ + ++ + +++D+A+V+  V D+F  +G+ KP+I++LSDEFL EVR+  ++N+
Sbjct  820   TDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNL  879

Query  878   ALETLKKLLNQEIKARSKTNLVQAKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIK  937
             A+E L KLLN+ I AR++ N+VQ K   + L   + RY+++AI + + ++ELI+ AKE++
Sbjct  880   AVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQ  939

Query  938   NMDTEYQKLGLTEYEYAFYTAVANNESAKEIMQTDKLRELAIELFNRLKSSASIDWTKKE  997
                +  + LGL   E AFY A+A+NESA   +  + L+ LAIE+  +L+ S+++DW  +E
Sbjct  940   AAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRE  999

Query  998   SVRAKLRVTVKRTLRQFGYPPDMQKIATDTVLKQAE  1033
             SVRA+LR+ V++TL ++ YPPD    A + +LKQAE
Sbjct  1000  SVRARLRILVRKTLLKYKYPPDKALDAVELILKQAE  1035

79) RoseRS_0281 in NC_009523


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  815 bits (3085),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1040 (49%), Positives = 752/1040 (73%), Gaps = 38/1040 (3%)

Query  7     FCESTIESAALARLEASGWQVAHGPDLAPGTRTAERRDYGEVVLTGRLRDALARLNPDLP  66
             + E  +E  +L+++ + GW+V HGPD+AP+ + + R  + +V L   +R  L  LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  67    VEALDDAFRQLTQPQGADLIQRNRAQHRLLVDGVTVEHRNAGGAICGAQARVIDFDDPAN  126
                +D+ + ++T+P+++D++  N+A H+LL+ GV VE +  +  I ++ A ++DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDT-ALLMDFNHPEN  120

Query  127   NDWLAVNQFTVVENKHTRRPDIVLFVNGLPLAVLELKNAADEKATIWTAWQQLQTYQAQI  186
             N    VNQ ++   K+ RRPD++ ++NGLP+AV+ELK+++D +A IW+A +QLQTY+ +I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  187   PSLLATNAALVISDGLTARVGALGAGREWFKPWRTIHGEALADPHM-PELQVVIEGLFAP  245
             + L+  N ALVISDG  AR+G+L A+ E+F PW+TI  E    P +  +L+ V++G+F  
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNED-DKPLLEHQLENVVNGFFNR  239

Query  246   RRFLDFVRDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVAETLRAAELARTDQVAeergry  305
               +LD++R FI+FE DG  RLIKK+A+YHQFHAV+ AV  T+ A+               
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVAS------------TGK  286

Query  306   eagrrpggkpgdrrigVVWHTQGSGKSLTMVFYAGRIVREPAMENPTIVVLTDRNDLDDQ  365
                 R+  KPG ++ GVVWHTQGSGKS++M  YAG++++++ M+NPTIVV+TDRNDLD+Q
Sbjct  287   FLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQ  346

Query  366   LFATFARCRDLLRQPPVQAESRVHLRQILSV-AAGGVVFTTIHKFFPEEKGDRHPTLSER  424
             L++TF + +DLL+Q P QA +R +LR++L+   +GG++FTT++KF P +  + HP+L+ R
Sbjct  347   LYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLR  406

Query  425   RNIVVIADEAHRSQYD----------FIDGFARHMRDALPNASFIGFTGTPIEKTDANTR  474
              NIVVI+DEAHRSQY+          +  G+A+HMRDALPNASF+GFTGTP+   D +TR
Sbjct  407   DNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  475   AVFGDYISIYDIQRAVEDGVTVPIYYESRLAKLALDETERPKIDPDFeevtegeeverke  534
             AVFGDY+SIYDIQ AV+DG TVPIYYESRLAKL L++ E   + ++ +++ E+EE ++KE
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKE  526

Query  535   rLKSKWAQFEAIVGAEKRLRLVARDIVEHFEKRLEALDGKAMIVCMSRRICVELYREIAQ  594
             + K+ W+++E +VG+E R++ VA D+V HF  R  +++GKAMIV MSR ICV LY  +  
Sbjct  527   KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVA  586

Query  595   LRPQWAADDDERGAMKVVMTGSASDPLDWQPHIRNKPRREALANRFRNPGDPFRLVIVRD  654
             LRP+W ++D E+G +K++MTGSASD  + QPHI NK  +  L  RF++  DP+++VIVRD
Sbjct  587   LRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRD  646

Query  655   MWLTGFDAPSLHTMYIDKPMRGHGLMQAIARVNRVFHDKPGGLVVDYLGLAHELKAALAT  714
             MWLTGFDAP  HTMYIDKPMRGH LMQAIARVNRVF DKPGGLVVDY+G+A+ELK AL T
Sbjct  647   MWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKT  706

Query  715   YTESGGTGQTTVDQQEAIALMQEKYEICCGIL------HGFDWSDWISGDPQARIGLLPA  768
             YT+S G GQTT+D ++A+A++ EK ++  G++       GFD S  +  +PQ    +L  
Sbjct  707   YTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQH---VLLD  762

Query  769   AQEQVLSRVNGKERFIQAVRDLTRAFALATLHEEAIKIRDDVAFFQAVQAALTKRAPGEM  828
             A + +L+  +GK R+++ V  L +A +L +  +EA  ++ ++AF+ AV+ A+ K +  + 
Sbjct  763   AANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK  822

Query  829   R-PEDELDHAVRQIIARAVAPAGVIDIFTAAGLQKPDISILSNEFLAEVRGMPQRNLAVE  887
             + ++ E +  + +I+  A+ ++GV D+F+ AGL+KP+I++LS+EFL EVR MPQRNLAVE
Sbjct  823   KFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVE  882

Query  888   TLQKLLKGEISTRQRKNVVQARSFAEMLEQTIRRYQNRAIEAAQVIEELISLARDMREAD  947
              L+KLL++ I +R  +NVVQ + +++ L   + RY+NRAIE+AQVIEELI +A++ + A 
Sbjct  883   LLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAM  942

Query  948   ARGKKLGLSEEELAFYDALETNDSAVKVLGDETLRTIARELVKTVRSNVTIDWTIRENVR  1007
             AR+  LGL+ +E+AFYDAL  N+SAV+ LGDETL+ +A E+   +R + T+DW +RE+VR
Sbjct  943   ARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVR  1002

Query  1008  AQLRVLVKRILRKYGYPPDR  1027
             A+LR+LV++ L KY YPPD+
Sbjct  1003  ARLRILVRKTLLKYKYPPDK  1022

80) GYY_04440 in NC_015847


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  815 bits (3087),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/1047 (48%), Positives = 743/1047 (71%), Gaps = 28/1047 (2%)

Query  4     LCEDTVEQGTLELLKSIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRDAISRINPKVP  63
             L ED +EQ +L  + + G E++ GP+IAPDG +P R  + +V L + +R  +  +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    VEAREDALRKVLRLENPNLLMNNEKFHEFIFKGIDVEYPIDGRVKGDKVYLLD-KDPLKN  122
                 ++ + ++ R E+P+++++N  FH++++ G+ VEY  D++V  D   L+D ++P +N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
              F  VNQ +I   ++ RRPD++ ++NGLP++VIELK+P+  +A IW+A+NQ+QTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF  NE ++ISDG ++RIG+L+++ E+FLPWK+I    +      QL   + G F++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   FIDIIKNFIVFKKDGKDIIKVIAGYHQYFAANRAIEKTIEAVSG------------NRRC  290
             ++D I+ FI+F  DGK +IK IA+YHQ+ A   A++ TI A +G            +++ 
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  291   GVVWHTQGSGKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCIDVLKQT  350
             GVVWHTQGSGKS++M  YAGKL   +E+ NPTIVVVTDRNDLD+QL+ TF    D+LKQ 
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  351   PVQAKNAEDLKEQLKV-VSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQY  409
             P QA N ++L+E L    SGG+IFTT+QKF+  + +   P L+ R+NI+V++DEAHRSQY
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  410   GLKAKSVARNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDV  469
             GL A ++ ++G  +  YG+AK +RDALPNASF+GFTGTP+  EDK TR++FG+Y+ IYD+
Sbjct  422   GLSA-TLDKDG--AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  470   RRAVADGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAI  529
             + AV DG TV IYYESR+AK++++++ L  L ++ +++ E EE  +KEK KG W++LE +
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  530   VGSNDRISKVAQDIVNHFEKREETLTGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKL  589
             VGS+ RI +VA D+V+HF  R+ T+ GKA++V MSR ICV LY+ ++ LRPEWH++D   
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  590   GVLKVIMTGSAADGTEWQKHIRTKGKRKELAEHFKDSESEFKIAIVRDMWLTGFDVPCLH  649
             G +K+IMTGSA+D  + Q HI  K  +K L  +FKD +  +KI IVRDMWLTGFD PC H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  650   TLYIDKPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALVNYTSNGGTGKPTY  709
             T+YIDKPM+GH LMQAIARVNRVF+DKPGGLVVDYIGIA++LK AL  YT + G G+ T 
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  710   DIEDAVNLMKSKYEAMKDFFY------GHDYSKFFNGTNIEKMDVIPETLEFILNQPDGK  763
             D  DA  ++  K + + + F       G DYS F    + +  +V+ ++ ++IL   DGK
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLDDGK  774

Query  764   KRFVKLALELIKSYALSLPHEEAIKIREEVAFFTGVKAALYKNTEISGK-PEDELNSAIK  822
             KR+  + L L K+ +L    +EA  ++ E+AF+++VK A+ K T    K ++ E NS + 
Sbjct  775   KRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLS  834

Query  823   QIVSGAVRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRA  882
             +I+  A+ + G+ DVF+ AGL+KP+I++LS++FLE+V++M  +NLA+E L K+LND I+A
Sbjct  835   RILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHA  894

Query  883   KFKNNLLQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEE  942
             + +NN++QEKK+S+ +   + RY+N+AI++A VI+ELI +AKE++ A  R++ L L  +E
Sbjct  895   RTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDE  954

Query  943   LAFYDALSDNDSAKEILGTEVLSEIARELTDTLRKNISIDWEVRETVRATLRVRVKRLLK  1002
             +AFYDAL++N+SA   LG E L  +A E+T  LRK+ ++DW+VRE+VRA LR+ V++ L 
Sbjct  955   IAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLL  1014

Query  1003  KYGYPPDKAQIAADLVLKQAETISKEW  1029
             KY YPPDKA  A +L+LKQAE +S+ W
Sbjct  1015  KYKYPPDKALDAVELILKQAEVVSNSW  1041

81) UMN179_00648 in NC_015460


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  814 bits (3081),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1063 (49%), Positives = 769/1063 (73%), Gaps = 43/1063 (4%)

Query  3     INESTIEHQAIEQLQSLGWQYAYGKEVLPNEAYPWRESRNEVVLKPLLLQSLQKINPHLP  62
             ++E  +E+ ++  + + GW+   G ++ P+   P R S ++V L+P++ + L+ +NPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63    EETLQEVVSSVCKSDISSVEERNRQFYQLLKQGVKVHYQQNGQEKNDVALLVDFKHPENN  122
                ++E++S + +++ + +   N+ F +LL  GV V+Y+++++  +D ALL+DF+HPENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   LFYVINQLEIQGIKGKRIPDILCFVNGLPLVIFELKNPLDVKADLERAFNQLQTYKKEIE  182
              F V+NQ+ I G K  R PD++C++NGLP+ ++ELK+P DV+AD+  AFNQLQTYK+EI 
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   ELFVFNQMMLISDGTAARVGSLTADLQRFSPWKVVDESNRSRRLIFEDELSGVLQGLFSP  242
             +LF+ N+ ++ISDG  AR+GSLTAD +RF PWK + + +   + ++E++L  V++G+F+ 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDD--KPLLEHQLENVVNGFFNR  239

Query  243   QVLLDYLHDFIVFENDSKGRTIKKIAAYHQFYAVNAAVEASI-----------RAVENNS  291
             ++LLDY++ FI+FE+D+K R IKKIAAYHQF AV  AV+A+I             +   S
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVVWHTQGSGKSLSMLFYAGKLISQPELKNPTIVVVTDRKDLDGQLFTTFSqdqdit  351
             +K GVVWHTQGSGKS+SM  YAGKL+ Q+E++NPTIVVVTDR+DLDGQL+TTF Q +D+ 
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   qqppiqADGrealreelakreSGGIIFTTIQKFGLREGEADHPVLNSRHNIIVISDEAHR  411
             +Q P QA  R+ LRE LA RESGGIIFTT+QKF+  +GE  HP LN R+NI+VISDEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFAQKIN-QGMYREGYAKYLRTALPNAGFIGFTGTPISLEDKDTQEVFGDYISIYDI  470
             SQYG++  ++ +G Y+ GYAK +R ALPNA+F+GFTGTP+S EDKDT+ VFGDY+SIYDI
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  471   YDAVEDGATVPIIYEAR--QIPLTESSKYSLAMRe----aenllddddeenFQFRLREQL  524
              DAV+DGATVPI YE+R  ++ L +    +L+ +      ++  D+ +  + +    E+L
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   MGTEQRLNRLAEDLVNHFEIRNTLAEGKAMVVVMSRRICVKLYNEIIKLRPEWHSDDVHQ  584
             +G+E R++++A DLV+HF  RN+  +GKAM+V MSR ICV+LYN ++ LRPEWHS+DV++
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GAIKIMMTGNAGDPPEMQAHIYSSQDKKILEKRFKDAEDPLKIVIVRDMWLTGFDAPCCH  644
             G IKI+MTG+A+D  ++Q+HIY+ Q KK LE RFKD +DPLKIVIVRDMWLTGFDAPCCH
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  645   TMYIDKPMQGHNLMQAIARVNRVFRNKSKDNGGLIVDYVGLAEELKQATIQYTNSGGKDR  704
             TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+G+A+ELKQA   YT+S GK++
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  705   VKTDIDQVFQKMLEYLDIIKGQFATPVDGKVFPLGEALKINQQDALIKAILQAANHIVAL  764
                D  + F  +LE LD+I G FA    +  F  + A+  N Q+ L    L+AAN I++L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS-AFENNPQHVL----LDAANYILGL  770

Query  765   DRVNQQADDSSDKTPRKNAFLQAVRQAKKGLSLCGAMEKVQPYRQQLAFFDAVRATIIKQ  824
             D               K+ +++ V   +K+ SLC++++  +P +++LAF+ AV+ +IIK 
Sbjct  771   DDG-------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  825   ERQAPSSASPQERQLKLTALLNQAVHSEEAIDLFALIGEKRPDISLLSEEFMQMVKDSDI  884
                    + ++   L L+ +L++A+ +    D+FAL G  +P+I+LLS+EF++ V++   
Sbjct  818   TTTDKKFSQSEKNSL-LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQ  876

Query  885   KDLWLTAIEGYLKSEIREKSANNLATQKRFEEKLKEAMNRYHNHNLTVIDIIKELLAMAK  944
             ++L +  +E  L+  I+ ++ NN+  +K++ ++L+  + RY+N+ +   ++I EL+ MAK
Sbjct  877   RNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAK  936

Query  945   EFEQQLAKGQELGLSDTELAFYEALIRNQSAVEVMGDQALIPLAKEITEQLRKSVTVDWQ  1004
             EF+  +A+++ LGL+  E+AFY+AL  N+SAV  +GD++L  LA E+T QLRKS TVDWQ
Sbjct  937   EFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQ  996

Query  1005  YKESVRAKMRRLIRRALSKYKYPPDLEKEAVEFVLQQAEVVAE  1047
              +ESVRA++R L+R++L KYKYPPD   +AVE++L+QAEVV++
Sbjct  997   VRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

82) hsdR in NC_010337


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  813 bits (3079),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1045 (49%), Positives = 754/1045 (73%), Gaps = 32/1045 (3%)

Query  9     ESELEEAALEWFQELNYETAFAPELSPGGDYPEREDYGDVILQDRLRDALQRINPHLPPE  68
             E +LE+ +L WF     E   +P+++P+G  P R  + DV+L+  +R  L+ +NPHLP+ 
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  69    AIEDAYRQIAIPQSPSLLMNNKAFHKLITDGIDISYRHKGGAVRYAKAMVFDFDPCRVDN  128
              +++   +I+ P+SP ++++NKAFH L+  G+ + Y++ +  ++   A++ DF+  + +N
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIH-DTALLMDFN--HPEN  120

Query  129   NDWLVVNQFTVIENRVEKRPDMVVFVNGIPLVVIELKSSSDEEVGISEGFNQLQTYKQTI  188
             N   VVNQ ++   +  +RPD++ ++NG+P+ VIELKS+SD + +I  +FNQLQTYK+ I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  189   PSLFTYNAFMVTSDGINARAGTLTADEDRFMMWRTIDGDDVAPLSIPQLEVLIKGMFDKR  248
             + LF  N  +V SDG NAR G+LTADE+RF+ W+TI  +D  PL   QLE +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  249   RLLDIVRHFITFQTDGRDTYKLLAGYHQYHAVNKAVDSTV----------RATLEKGDRR  298
              LLD +R FI F++DG+   K +A+YHQ+HAV  AV++T+          R+ +  G ++
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  299   IGVIWHTQGSGKSLSMVFYTGKLVLAEELDNPTIVVITDRNDLDDQLFGAFARSKDLLRQ  358
              GV+WHTQGSGKS+SM  Y+GKL+   E++NPTIVV+TDRNDLD+QL+ +F ++KDLL+Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  359   TPVQAKdradlrrl-lereaggIIFTTIHKFAPEAKGDRIPVLTDRKNVIVIADEAHRSQ  417
              P QA +R +LR +   RE+GGIIFTT++KFAP    +  P L  R N++VI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  418   YGFGADVVEGKDEADIKYGYAKYMRDALPNASYIGFTGTPIELTDKNTRAVFGDYIDIYD  477
             YG++A +     ++  KYGYAK MRDALPNAS++GFTGTP+   DK+TRAVFGDY+ IYD
Sbjct  421   YGLSATL---DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  478   MTRAVEDGTTVKIYYESRIAKLDLPDEMKPVVDeeyeeitehqeyeqkeKLKSKWSRLEA  537
             +  AV+DG+TV IYYESR+AKLDL +E    +  + +++ E++E +QKEK K+ WSRLE 
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  538   IVGADERIQVVARDIVEHFEKRQAAQETAVGKAMIVVMSRRIAVDLYHAIVTLRPEWHSD  597
             +VG++ RI+ VA D+V HF  R+A+ +   GKAMIV MSR I V LY+A+V+LRPEWHS+
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICVRLYNALVALRPEWHSE  594

Query  598   DLDRGVIKVVMTGGSADPKEWQPFIGTKATRDRLAKRMKDNDDELKLVIVRDMWLTGFDV  657
             D+++G IK++MTG+++D  + QP I  K T+ RL  R KD +D LK+VIVRDMWLTGFD 
Sbjct  595   DVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDA  654

Query  658   PSMHTMYIDKPMGGHNLMQAIARVNRVFREKQGGLVVDYIGIAENLKAALRDYTES-DKQ  716
             P  HTMYIDKPM GHNLMQAIARVNRVF++K GGLVVDYIGIA++LK AL+ YT+S +K 
Sbjct  655   PCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKG  714

Query  717   TTGVDTDQAAEVMLEKYDLIQEML------HGHDYSKFFTGKASDRMQAIVETIDFVIGL  770
              T +D+ +A  V+LEK D+I+ M+       G DYS F     ++  + ++++ ++++GL
Sbjct  715   QTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGL  770

Query  771   RERKDEYMRLVTELSKAYSLCATTDAAEKLNLEVGFHKAVKAGIIKMIPENTKKRTGAHL  830
              + K  Y  +V  L+KA SLC+T D A  L+ E++F  AVK +IIK+   + KK + ++ 
Sbjct  771   DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD-KKFSQSEK  829

Query  831   DAQLNQLISKSISSNEVIDILQAVGLQKPNIAILSDEFLEEVRVMKQKNLAVELLNRLLK  890
             ++ L++++ ++I +  V D++   GL+KPNI++LSDEFLEEVR M Q+NLAVELL++LL+
Sbjct  830   NSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLN  889

Query  891   GKVKAFARKNLILSKKFSEMLEQAIKKYQNRTIETTQVIIELIELAKEVNKAHGRGENTG  950
             + + A + +N++  KK+S+ L   + +Y+NR+IET+QVI ELI++AKE + A +R++  G
Sbjct  890   DGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALG  949

Query  951   LTEDELAFYDALADNESARELMGDEILKQIARDLTQQIKRNMTVDWSLRSSVQARMKMII  1010
             L  DE+AFYDALA+NESA   +GDE LK++A ++T Q++++ TVDW +R SV+AR+++++
Sbjct  950   LNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILV  1009

Query  1011  KRLLKKYNYPPDNREKALSTVMEQA  1035
             ++ L KY+YPPD+   A+  ++ QA
Sbjct  1010  RKTLLKYKYPPDKALDAVELILKQA  1034

83) Turpa_2677 in NC_018020


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 512/1055 (49%), Positives = 736/1055 (70%), Gaps = 33/1055 (3%)

Query  6     VNEDLLEQAALQWFKEQGYTHIHGSTIAPGEPAAERESFEEVVLSGRIRDALARINPTLS  65
             ++ED LEQ +L WF  QG   +HG+ IAP+   + R SF++V L   +R  L  +NP L+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  66    TEVIDEAHKQLMRMDAPTCLINNRTFHRYVTDGISVSYSKNGDERVEPVKIIDFEKPENN  125
             + ++DE   ++ R ++P  +++N++FH+ +  G++V Y +++    +   ++DF+ PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  126   DWLVVNQFAIIAKPYHRRPDIIVFLNGLPLVVFELKNMVGAPTVA-DAYRQLQTYKAQIP  184
                VVNQ AI +    RRPD+I ++NGLP+ V+ELK+  +  +    A+ QLQTYK +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  185   KLFNYNELMVVSDGNATTLGTLTADESRFMPWKYIESEKLISGGKLSIQVVIEGVFEKRR  244
              LF  NE +V+SDG  + +G+LTADE RF+PWK I +E   +     ++ V++G F++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  245   FLDLIRYFVVYEDNYGGEVIKKIAGYHQFHAVNRALAETVRATGAN----------GDRR  294
             +LD IRYF+++E + G  +IKKIA+YHQFHAV  A+  T+ A+ ++          G ++
Sbjct  242   LLDYIRYFILFESD-GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  295   IGVVWHTQGSGKSLTMAFYAGRVVQSAAMENPTVLVITDRNDLDDQLAGTFSRCHEILRQ  354
              GVVWHTQGSGKS++M  YAG+++Q A M+NPT++V+TDRNDLD+QL  TF +  ++L+Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  355   NPTQAENRDDLKEKLKV-ASGGIIFTTVQKFFPDEKGMKHPLLSDRRNIVVIADEAHRSQ  413
             +P QA NRD+L+E L    SGGIIFTTVQKF P +    HP L+ R NIVVI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  414   YSFGARVVDVKGASGQVEGKEITYGFAQHMRDALPNASFIGFTGTPIELSDKNTRAVFGE  473
             Y+++A  +D  GA          YG+A+HMRDALPNASF+GFTGTP+   DK+TRAVFG+
Sbjct  421   YGLSA-TLDKDGA--------YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  474   YISVYDIQRAVEDGATVRIYYESRLAKIALDEKERPKLDADFEEVTegeedlkkeklkSR  533
             Y+S+YDIQ AV+DGATV IYYESRLAK+ L++ E   L ++ +++ E+EE  +KEK K+ 
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  534   WAQLEALVGAPKRVKLIAEDIVRHWEGRKAAMKGKAMIVCMSRRICVDMYNAIVKIRPNW  593
             W++LE LVG+  R+K +A D+V+H  +R+A+M+GKAMIV MSR ICV +YNA+V +RP+W
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  594   HSENDAEGSIKIIMTGSASDPAEYQPHVRSKQRREDMAKRFKKSADSLEIVIVRDMWLTG  653
             HSE+   G IKIIMTGSASD  + QPH+ +KQ +  +  RFK   D+L IVIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  654   FDAPCAHTMYVDKPMKGHGLMQAIARVNRVFEDKKGGLVVDYLGLADSLKSALANYTDSG  713
             FDAPC HTMY+DKPM+GH LMQAIARVNRVF DK GGLVVDY+G+A+ LK AL  YTDS 
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  714   GEGKPTFDQDDAVAVMLEKYEICCGLF------HGFDWTKFKSGSPAERLGIMPLAQEHI  767
             G G+ T+D  DA AV+LEK ++  G+F       GFD + F + +    L+    A + I
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLD----AANYI  767

Query  768   LSQKDGAERLIQHVAELTNAMALAMPHDEAKKIVEDVAFFQAIKAVLTKPTTRQAR-TEE  826
             L+  DG  R ++ V  L +A +L    DEAK +  ++AF+ A+K  + K TT + + ++ 
Sbjct  768   LGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQS  827

Query  827   DMNRAIQQIISRALVSDEVIDVFRAAGLKKPDVSILSDEFLMEIQGMKHKNLAIELLRRL  886
             + N  + +I+  A+V+  V DVF  AGL KP++++LSDEFL E++ M ++NLA+ELL +L
Sbjct  828   EKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKL  887

Query  887   LNDEIKTRGQRNVVESRSFSKMLEDAIQKYKNRAIETVQVIEELIKLAKELRDAHARGEQ  946
             LND I +R + NVV+ + +S  L   + +Y+NRAIET QVIEELI++AKE++ A AR++ 
Sbjct  888   LNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDA  947

Query  947   LGLTEDEMAFYDALEVSDSAVKIMGDKVLSEIARELVKSIKANVSIDWTVRENVRAKLRT  1006
             LGL  DE+AFYDAL  ++SAV+ +GD  L  +A E+   ++ + ++DW VRE+VRA+LR 
Sbjct  948   LGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRI  1007

Query  1007  VVKRILRQSGYPPDKQEKAVETVLEQVERLSEQWA  1041
             +V++ L +  YPPDK   AVE +L Q E +S+ W+
Sbjct  1008  LVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

84) TSC_c12320 in NC_014974


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  811 bits (3071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/980 (52%), Positives = 731/980 (75%), Gaps = 26/980 (2%)

Query  1     MMHPEGADLIQRNRAVHRMLVDGVTVEYRTSEGAIRGAQARVIDFDDPENNDWLAVNQFT  60
             + +PE++D++  N+A H++L+ GV VEY+  +  I+++ A ++DF++PENN    VNQ +
Sbjct  72    ITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDT-ALLMDFNHPENNRFTVVNQVA  130

Query  61    VVENRHRRRPDVVLFVNGLPLAVIEFKNPTDKKATIWSAYRQLQTYKAEIPSLLVYNEAL  120
             +   ++ RRPDV+ ++NGLP+AVIE+K+P+D +A IW+A+ QLQTYK EI+ L++ NEAL
Sbjct  131   ISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEAL  190

Query  121   VISDGLEARIGTLTADRDRFMPWRTITGEDVAPAEMPQLEVLLKGVFERRRFLELVRGFV  180
             VISDG +ARIG+LTAD +RF+PW+TI+ ED  P    QLE +++G F+R  +L+ +R F+
Sbjct  191   VISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFI  250

Query  181   VFEDEGGGKLAKKMAGYHQFHAVRVAVEETL-RAAARYEAGRQPGGKPGDRRIGVVWHTQ  239
             +FE +G  +L KK+A+YHQFHAVR AV+ T+  +++++ + R +  KPG ++ GVVWHTQ
Sbjct  251   LFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLR-SNIKPGSKKAGVVWHTQ  308

Query  240   GSGKSLTMVFYAGRIIRHPRMENPTIVVLTDRNDLDGQLFGVFSRCRELLGQDPIQAESR  299
             GSGKS++M  YAG++++++ M+NPTIVV+TDRNDLDGQL+  F + ++LL Q+P QA +R
Sbjct  309   GSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNR  368

Query  300   AHLRELLQGRQSGGVIFTTIQKFLPEEKGDRYPQLSDRRNIVVIADEAHRSQYDFID---  356
              +LRE+L +R+SGG+IFTT+QKF P +  +  P L+ R NIVVI+DEAHRSQY++     
Sbjct  369   DQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD  428

Query  357   -------GFARHMRDALPNASFIGFTGTPLELDDRNTRSVFGDYISIYDIQRAVLDGATV  409
                    G+A+HMRDALPNASF+GFTGTP+  +D++TR+VFGDY+SIYDIQ AV DGATV
Sbjct  429   KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATV  488

Query  410   PIYYESRLAKLDLPEELKPKvdeefeevteseeverkeRLKTKWAQLEAVVGAEKRLRLV  469
             PIYYESRLAKLDL +E    +  + +++ E EE ++KE+ K  W++LE +VG+E R++ V
Sbjct  489   PIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQV  548

Query  470   AQDIVTHFEQRLEALDGKAMIVCMSRRICVELYNEIVRLRPAWHNDGDDKGVIKVVMTGS  529
             A D+V HF  R  +++GKAMIV MSR ICV LYN +V LRP WH+++ +KG IK++MTGS
Sbjct  549   AADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGS  608

Query  530   ASDPVEWQSHIRNKQRREFLAKKRFRDPADPFKLVIVRDMWLTGFDCPSLHTMYLDKPMR  589
             ASD  + Q+HI NKQ +  L   RF+D  DP+K+VIVRDMWLTGFD P  HTMY+DKPMR
Sbjct  609   ASDKEHLQPHIYNKQTKKRLEA-RFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMR  667

Query  590   AHGLMQAIARVNRVFRDKPGGLVVDYLGLAHELKAALATYTESGGTGRTAIDQSEAVAVM  649
             +H LMQAIARVNRVF+DKPGGLVVDY+G+A+ELK AL TYT+S G G+T+ID  +A AV+
Sbjct  668   GHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVL  727

Query  650   EEKYEICRNLF------HGFDWSLWKTGRPEERLALLPAAQEHILAQENGKERLLQAVSE  703
              EK ++ + +F       GFD S       +    +L  A + IL+ ++GK R ++ V  
Sbjct  728   LEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILGLDDGKKRYFDVVLA  783

Query  704   LSRAFALALPHEKALAIRDDVAFFQAVRAALAKRASSEER-TEEDLDHAIRQIVSRALMP  762
             L++A +L    + A +++ ++AF+ AV+ A+ K ++++ + ++ + +  + +I+  A+++
Sbjct  784   LNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVA  843

Query  763   EGVVDLFAAAGLKKPDISILSEEFLAEVRGMPQRNLAVELLRKLLEGEIKTRRKKNVVQA  822
              GV D+FA AGL KP+I++LS+EFL EVR MPQRNLAVELL KLL++ I +R ++NVVQ 
Sbjct  844   TGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQE  903

Query  823   RSFAEMLEQAIRRYQNRAVEAAQVIEELIALAREMREADRRGQALGLSEEELAFYDALET  882
             + +++ L   + RY+NRA+E+AQVIEELI +A+E + A  R++ALGL+ +E+AFYDAL  
Sbjct  904   KKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAE  963

Query  883   NDSAVKVLGEPTLREIARELVDTVRRNVTIDWTERENVRAHlrrlvkrvlrkYGYPPDKQ  942
             N+SAV+ LG+ TL+ +A E+   +R++ T+DW  RE+VRA+LR LV++ L KY YPPDK 
Sbjct  964   NESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKA  1023

Query  943   ERATQTVLEQAEVLSEQWAA  962
               A + +L QAEV+S+ W+A
Sbjct  1024  LDAVELILKQAEVVSNSWTA  1043

85) Nhal_0892 in NC_013960


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  811 bits (3072),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1084 (48%), Positives = 764/1084 (71%), Gaps = 65/1084 (5%)

Query  5     LTESAIENLAIELLANQGYQYLHGADLAPDAPNPGRPSFGDEFLVGRLQDAVARLNPTIP  64
             L+E  +E+L++  +A QG + LHG+D+APD+ NP R SF D FL   ++  +  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    PDAQEQAIKEILRLAVETGSTRELLAANEAFHRLLTNGVEVEFQHEGRTKGDKVWLVDFA  124
             +   ++ I  I R       + +++ +N AFH+LL +GV VE++++++   D   L+DF 
Sbjct  62    ASLFDEIISRITR-----PESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFN  116

Query  125   NPAANDCLVVNQFTVTTKSGHGHVNKRPDLVLFINGLPLVVVELKNAASENATVRSAYEQ  184
             +P  N   VVNQ ++   SG  ++ +RPD++ +INGLP+ V+ELK+++  NA +++A++Q
Sbjct  117   HPENNRFTVVNQVAI---SGTKQL-RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQ  172

Query  185   LQTYKHAIPSLFLANGLLVASDGLEARMGSLSAGFSRFMAWKTTDGKKEASHRVGQLETL  244
             LQTYK+ I+ LF+ N  LV SDG +AR+GSL+A+  RF++WKT     + +    QLE +
Sbjct  173   LQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENV  232

Query  245   IQDVLKPATLLELIRHFTVFEKSRREDPKTGLTTVETVKKTAAYHQFYAVKKAVEST---  301
             +++ ++   LL+ IR F +FE   +            +KK AAYHQF AV+ AV++T   
Sbjct  233   VNGFFNRELLLDYIRYFILFESDGKR----------LIKKIAAYHQFHAVREAVNATIVA  282

Query  302   -------LHATGTDGSRKGGVVWHTQGSGKSLSMVFYAGKLV--LALDNPTIVVLTDRND  352
                    L++    GS+K+GVVWHTQGSGKS+SM  YAGKL+    ++NPTIVV+TDRND
Sbjct  283   STGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRND  342

Query  353   LDDQLFDTFAASRQLLRQEPVQAENRDDLRDKLKV-ASGGVIFTTMQKFSPKNGEAIYPL  411
             LD+QL+ TF  +++LL+QEP QA NRD+LR+ L    SGG+IFTT+QKF+P +GE   P 
Sbjct  343   LDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPA  402

Query  412   LSDRRNIVVIADEAHRSQYGFKAKEVDIKDADDNIVGKKTAY--GFAKYLRDALPNATFI  469
             L+ R NIVVI+DEAHRSQYG+ A            ++K  AY  G+AK +RDALPNA+F+
Sbjct  403   LNLRDNIVVISDEAHRSQYGLSAT-----------LDKDGAYKYGYAKHMRDALPNASFM  451

Query  470   GFTGTPVELDDKNTPAVFGDYVDVYDIAQAVEDGATVRIYYESRLAKVRLKEKEKEALDQ  529
             GFTGTPV  +DK+T AVFGDYV +YDI +AV+DGATV IYYESRLAK+ L++ E EAL  
Sbjct  452   GFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSS  511

Query  530   RFDQVMEDAADYETGFSDEDELSEKAKAKWTQLEAIVGNRQRVENVARDLVAHFEERQKI  589
             + D+++ED         +E +  EK+K+ W++LE +VG+  R+ +VA DLV HF  R+  
Sbjct  512   QVDDLVED---------EETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  590   FDGKGLIIAMSRRICVELYDAIVTLRLGWHSDDDAQGAIKVIMTGSSADPQAMQPHIRSK  649
              +GK++I+AMSR ICV LY+A+V+LR  WHS+D  +G IK+IMTGS++D + +QPHI +K
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  650   EARKAIGERLKDPGDPLKLVIVRDMWLTGFDAPCLHTLYVDKPMKGHNLMQAIARVNRVY  709
             +++K +  R+KD  DPLK+VIVRDMWLTGFDAPC HT+Y+DKPM+GHNLMQAIARVNRV+
Sbjct  623   QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF  682

Query  710   KDKPGGLVVDYIGIASDLKRVLAIYTESGGKGQPTLDIDDAVRAMQEKFEVVQQMLA---  766
             KDKPGGLVVDYIGIA++LK+ L  YT+S GKGQ T+D  DA   + EK++V++ M+A   
Sbjct  683   KDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTT  742

Query  767   ---GFDYRRYFGANTSGKLTIILEAEEYVLALEDGKARFSKEVDLLAKAFALSVPDERAM  823
                GFDY  +     +    ++L+A +Y+L+L+DGK R+   V  L KA +L    + A 
Sbjct  743   TDPGFDYSAF----ENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAK  798

Query  824   AIKDELAFFQAVKARLAKFERGEGK-SKEELDSAIRQLVDEAVVSDQVVDIFDAAGIKKP  882
             +++ ELAF+ AVK  + K+   + K S+ E +S + +++D+A+V+  V D+F  AG+ KP
Sbjct  799   PLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKP  858

Query  883   DISILSDEFMAEIKGMQHRNLALELLRKILNDEIRVRSKKNLVQSRALSEMLESAIKRYQ  942
             +I++LSDEF+ E++ M +RNLA+ELL K+LND I+ R+++N+VQ +  S+ L + + RY+
Sbjct  859   NIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYN  918

Query  943   NNllsaagiieelielareikeaDRRGEKLGLTEDELAFYDALEVNDSAVQVLGDNQLRE  1002
             N  + +A +IEELI++A+E++ A  R++ LGL  DE+AFYDAL  N+SAV+ LGD+ L+ 
Sbjct  919   NRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKK  978

Query  1003  IARKLVEKVKQNATIDWTVKESVRSKLKVIVKRILRKYGYPPDKQATATETILKQAELLA  1062
             +A  +  ++++++T+DW V+ESVR++L+++V++ L KY YPPDK   A E ILKQAE+++
Sbjct  979   LAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVS  1038

Query  1063  ESWA  1066
             +SW+
Sbjct  1039  NSWT  1042

86) SAEMRSA15_00470 in NC_017763


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  811 bits (3072),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1056 (46%), Positives = 757/1056 (72%), Gaps = 40/1056 (3%)

Query  7     FSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVLDDRLEAALRRINPELN  66
             +SEDDLEQ++L WF G G  V +G D + +G    R S  DV L   +   L  +NP+L 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  67    NSAIEQAIHEISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVLDFDNPGN  126
              S +++ I  I+   SP ++ +N++FH+++ +G+ VE Y+ D+  I+D   ++DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  127   NDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETYKMRI  186
             N F  VNQ+++      +RPD++ +INGLP+ VIELK++++ + +I  +++QL+TYK  I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  187   PQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGMLNKE  246
             ++LF  N  LV SDG N++ GSLTAD +RF+ W+T     + +   + L+ +++G +N+E
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  247   VLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSE----------HGDG  296
             +LLD IR F+LF+ DGK  ++K +AAYHQ+ AV  AV+ ++ A++            G  
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  297   KGGVIWHTQGSGKSLTMVFFSGKLIQK--LNNPTLVVVTDRNDLDNQLYGTFVKSKGRSG  354
             K+GV+WHTQGSGKS++M  ++GKL+Q+  +NNPT+VVVTDRNDLD QLY TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  355   KGLLRQTPKQAESRKELKELLSV-ESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMAD  413
             K+LL+Q P+QA +R +L+E+L+  ESGGI+FTT+QKF P +G+ +  AL  R N+VV++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  414   EAHRTQYGFKATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYI  473
             EAHR+QYG+ AT  +K+ + KYGYAK +RDALPNASF+GFTGTPVSS DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATL-DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  474   DVYDMTQSVEDGSTVKIYYESRIIPLNL-PTDLD-IDDAYDVITFGQEEDTKSRLKSKWS  531
              +YD+ ++V+DG+TV IYYESR+  L+L   +L+ +    D +  ++E D K + K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  532   RIEALSGAEKRVHALATEIINHFETRQKAMNGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  591
             R+E L G+E R+  +A+++++HF +R+ +MNGK+MIV+MSR I V LY+ ++ L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  592   DDDDKGVIKVVMTGSSSDPQNFQKHIGPKKRRNLLENRMKDINDELQLVIVRDMWLTGFD  651
             +D +KG IK++MTGS+SD +++Q HI  K+ ++ LE R KD+ND L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  652   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDS-DR  710
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YTDS ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  711   EQTGIDTDKALELMLVKYDIIQDMLYNH------DYSDFESEDQLNRYNAISNTMDYIIG  764
              QT ID+  A+ ++L K D+I++M+ +       DYS FE++ Q    + + ++ +YI+G
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILG  769

Query  765   LGEKERERFVTTVTELSKAFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPNEGSKLK  824
             L++  + R+   V  L+KA +LC+T + A+ L+ E+AFL AVK +++KL +  +     K
Sbjct  770   LDD-GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK-----K  823

Query  825   KTPAEIEAEINQLISKSVVTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVEL  884
              + +E ++ +++++ +++V+  V D++   G+++P+I++LSD+FL +V  + Q+N+AVEL
Sbjct  824   FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  885   LNKLLKGQVKSLMKTNTTVSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKE  944
             L+KLL++ + +  + N    K++S+ L   + +YNNR+IE+++VIEELIQMAKE++    
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  945   RGKELGLSTEEIAFYDALASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAKA  1004
             R+  LGL+ +EIAFYDALA +E+A   ++D  L+ +A E+T  ++++ +VDW  RES +A
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1005  KMRVQVRRLLKKYGYPPDIQKMAVEQVVEQAELMAS  1040
             ++R+ VR+ L KY YPPD    AVE ++ QAE++++
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

87) hsdR3 in NC_007146


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  809 bits (3063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 527/1076 (49%), Positives = 782/1076 (73%), Gaps = 55/1076 (5%)

Query  1     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFSRGNLSGVVFIEQLREAVRKLNPQL  60
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R ++ +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYQDDGEQKIEMARLVDFEHGEN  120
             P S  D ++   T+++  D+VV N++F  LL  GV VEY+ D+    + A L+DF+H EN
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDE  180
             NRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   IAELFVYNQALIISDGIAARLGSLSADFQRFTPWKVV-DEKNKSVRLYFDDELQSLLNGL  239
             I++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + +E +K++   ++++L++++NG+
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL---LEHQLENVVNGF  236

Query  240   MQPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQ---------  290
              + E LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++ +         
Sbjct  237   FNRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIK  295

Query  291   -GDKRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGK  349
              G K+ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +K
Sbjct  296   PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAK  355

Query  350   DLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDE  409
             DL+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R+NI+VISDE
Sbjct  356   DLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDE  415

Query  410   AHRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSI  468
             AHRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSI
Sbjct  416   AHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSI  475

Query  469   YDLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGEE-NPKLRLR------  520
             YD+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+EE + K + +      
Sbjct  476   YDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRL  535

Query  521   EKLLGSEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDN  580
             EKL+GSE+R+ ++A D+V+HFA RN  +++KAM+V  SR+ICV LYN ++AL+PEWHS++
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  581   INEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAP  640
             ++ G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  641   CCNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQG  700
             CC+TMY+DKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+EL +A + YT+S+G
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKG  712

Query  701   KGKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIRFAANHI  760
             KG+ +    D F  + E L+VI+++FA    +  FD  +A+E +NP+++L+    AAN I
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFE-NNPQHVLLD---AANYI  767

Query  761   LSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQEIAFY  820
             L+LD    DG                KK ++     ++K+  LC+TL E  P ++E+AF 
Sbjct  768   LGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  821   DAVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEF  878
              AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+LLS+EF
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  879   LQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEI  938
             L+ V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+ +   ++
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  939   LDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAKEITETL  998
             ++EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA E+T  L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  999   RKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAEDLTG  1054
             RKS T+DWQ +E+VRAR+R+LVR++L KYKYPPDK  +AV  ++KQAE +++  T+
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

88) hsdR in NC_012489


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  808 bits (3058),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/1061 (49%), Positives = 750/1061 (71%), Gaps = 38/1061 (3%)

Query  4     FSESIVEDAALEWLAGLGYEVRHGPDMAAGEPGAERSDPGYRDVVlehrlraallrlnpl  63
             +SE  +E+ +L W+AG G EV HGPD+A++   + R   +++DV L   +R  L  LNP 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRI--SFHDVFLRPIFRKQLETLNPH  59

Query  64    lqaEAIDEAYRKLTRLDAPSAMDRNRAMHRMLLNGVEVEFRRPDGSIGGGQVQIFDFDTP  123
             L A  +DE   ++TR ++P  +  N+A H++LL+GV VE++R D  I +  + + DF+ P
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHP  118

Query  124   TNNNWLAVNQFSVAEGQHHRRPDVVVFVNGLPLAVLELKNAADENATIWSAWQQLQTYQA  183
              NN    VNQ +++  ++ RRPDV+ ++NGLP+AV+ELK+++D NA IW+A +QLQTY+ 
Sbjct  119   ENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN  178

Query  184   QIPTLFTSNLALVISDGVQARIGALGAGKEWFKPWRTVSGTTSAPSSLSELEVLLHGVFE  243
             +I+ LF  N ALVISDG +ARIG+L A+ E+F PW+T+S     P    +LE +++G F+
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFN  238

Query  244   HRRFLDLLHYFVAFEQEDDGPLVKKLAGYHQYHAVNVAVEETLRAARSVNPDRIAENIGR  303
             +  +LD ++YF+ FE ++   L+KK+A+YHQ+HAV  AV+ T           I  + G+
Sbjct  239   RELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNAT-----------IVASTGK  286

Query  304   YSSGEQPGGEPGDRRVGVVWHTQGSGKSLTMAFYAGRVILHPGMANPTVVVITDRNDLDE  363
             + +  ++   PG ++ GVVWHTQGSGKS++M  YAG+++ ++ M NPT+VV+TDRNDLD 
Sbjct  287   FLP-LRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDG  345

Query  364   QLFGTFARCRNLLRQEPVQAKDRADLRKQLAV-SAGGVIFTTIQKFMPDERGDKHPPLSD  422
             QL+ TF + ++LL+QEP QA +R +LR  LA   +GG+IFTT+QKF P +  + HP+L+ 
Sbjct  346   QLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNL  405

Query  423   RRNVIVIADEAHRSQY----------EFHDGFAGHMRDALPNASFVGFTGTPIEKADANT  472
             R N++VI+DEAHRSQY           +  G+A HMRDALPNASF+GFTGTP+   D +T
Sbjct  406   RDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDT  465

Query  473   RQVFGEYISVYDIQRAVVDGATVPIYYESRLAKLEFAESEKLGIDSAFeevtegeeverk  532
             R VFG+Y+S+YDIQ AV DGATVPIYYESRLAKL++ + E  ++ S  +++ E+EE ++K
Sbjct  466   RAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQK  525

Query  533   eQLKSKWAQLEVIAGADTRLDLIARDIVDHFERRNEVLDGKAMIVVMSRRIAVALYNRIV  592
             E+ K+ W++LE + G++ R+  +A D+V HF  RN  ++GKAMIV MSR I V LYN +V
Sbjct  526   EKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALV  585

Query  593   ALRPEWHSDRNDEGLLKIVMTGSASDPVDWQPHIRNKTDREALATRFRDGSSGFRLVIVR  652
             ALRPEWHS+  + G +KI+MTGSASD  + QPHI NK  +  L +RF+D +  +++VIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  653   DMWLTGFDCPSLATMYVDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADALKSALA  712
             DMWLTGFD P   TMY+DKPMRGH LMQAIARVNRVFKDKPGGLVVDY+G+A+ LK AL 
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  713   TYTEAGGTGKTALDQEEAVAVMLEKHEICVGLF------HGFDRSAWYVGTAQQRLSLLP  766
             TYT++ G G+T++D  +A AV+LEK ++  G+F       GFD    Y +  ++   +L 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD----YSAFENNPQHVLL  761

Query  767   AAQEHVLALPDGKERLMRHVSELTRAFALAVPHDTAMHIRDDVGFFQAVRAVLAK-NEVG  825
              A + +L+L DGK R    V  L +A +L    D A  ++ +++F+ AV+  + K    +
Sbjct  762   DAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  826   RARPRSDVEHAIRQIVSKALVSDEVIDVFTAAGLKKPDISILSDEFLAEVRGMPHRNLAV  885
             +  ++S+ +  + +I+ +A+V+  V DVF+ AGL KP+I++LSDEFL EVR MP+RNLAV
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  886   ELLQKLLKGEIRTRSRRNVVQARSFAGLLEQALRRYQNRAVETAQIIEELIKLAKDMRAA  945
             ELL+KLL++ I++R+  NVVQ + +++ L   L RY+NRA+ETAQ+IEELI++AK+ +AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  946   NARGEALGLTDDELAFYDALEVNDSAVQVLGDEQLRVIARELVATIRKNVSIDWAIRDNM  1005
              AR++ALGL  DE+AFYDAL  N+SAV+ LGDE L+ +A E+ A +RK+ ++DW +R+++
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1006  RAQLRVYVKRILRKYGYPPDKQERATQTVLEQAELLSSEWA  1046
             RA+LR+ V++ L KY YPPDK   A + +L QAE++S+ W+
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

89) hsdR in NC_021499


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  808 bits (3059),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1061 (48%), Positives = 762/1061 (72%), Gaps = 44/1061 (4%)

Query  4     LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDEVVLKKRFEDAVARLNPGLP  63
             LSE  +EQ  L+ + + +  + +  DI+PDG  P R S ++V L+  F   +  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    LEARQDAVRRVMQSELPSLLEENRRIHKLMTEGVDVEYYADDGTLAAGKVVLIDFEHPGQ  123
                 ++ + R+ ++E P ++  N+ +H L+  GV VEY   D+ +  +  +L+DF+HP +
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPEN  120

Query  124   NDWLAVSQFVVINGQNNRRPDVVVFVNGLPLGVIELKAPGSAGAHLLGAFNQLQTYKKQI  183
             N    V+Q  +   ++ RRPDV+ ++NGLP++VIELK+P+   A++ +AFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PALFNTNVLLVTSDGIAARVGSLSADLERFMPWRTTDGTAVAPKGAPELSTLIEGVFEHR  243
             + LF  N  LV SDG  AR+GSL+AD ERF+PW+T       P    +L  +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RLLDVLCHFTVFGETGSGLAKIIAGYHQFHAVRHAVNSTVTASSPE----------GNQR  293
              LLD +  F +F   G  L K IA+YHQFHAVR+AVN+T+ AS+            G+++
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   VGVIWHTQGSGKSLLMAFYAGQLVKHPEMANPTLVVLTDRNDLDDQLFSTFSMCRDLIRQ  353
              GV+WHTQGSGKS+ M  YAG+L++++EM NPT+VV+TDRNDLD+QL++TF   +DL++Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   TPVQAESREDLQKVLN-RASGGVIFTTLQKFGEIDE-----PLTRRRNVVVIADEAHRSQ  407
              P QA +R++L+ +L  R SGG+IFTT+QKF+ +D      +L  R N+VVI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  408   YGFKAKVDAKTGEISYGFAKYMRDALPKASFIGFTGTPIEADDVNTPQVFGDYIDVYDIS  467
             YG+ A +D K G   YG+AK MRDALP+ASF+GFTGTP+ ++D +T  VFGDY+ +YDI 
Sbjct  421   YGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  468   RAVEDGATVPIYYESRLARIELDEDEKPKIDAEVDDLTEEDSEADQERFKKKWSTVEALV  527
              AV+DGATVPIYYESRLA+++L+++E   + ++VDDL E++   ++E+ K  WS +E LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  528   GSDKRLALVARDMVAHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSDDDNAG  587
             GS+ R+  VA D+V HF  R A+++GKAM+V MSR ICV+LY+ +V LRP+WHS+D + G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  588   AVKIVMTGAASDPQEWQKHIGNkarrdllakrardPKDALKLVIVRDMWLTGFDAPCMHT  647
              +KI+MTG+ASD ++ Q HI NK  +  L  R +D +D+LK+VIVRDMWLTGFDAPC HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  648   MYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYS-KNDQENTGVD  706
             MY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK AL+ Y+  +++ +T +D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  707   EAQAIAVMMEKFEVVRDMY------HGFDYVSALKGTPQERLAMMAGAIEWILDLQQKLA  760
               +A+AV++EK++V+++M+       GFDY SA+   PQ+   ++ +A + IL+L+    
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYILGLD----  771

Query  761   EKETTKEGKKNAHRRYQDavlalskafalasasDEARDIREEVGFFQAIRAALVK-SSTG  819
                   +GKK    RY D VLAL+KA +L S+ DEA+ ++ E++F+ A++ A++K ++T+
Sbjct  772   ------DGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  820   SGVTQQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMEKKNLAL  879
                +Q E++  + +I+  A+V+T + D++A AG+  P+I++LSDEFL EV++M ++NLA+
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  880   EALRKLINDGIRSRSKANVVQTKAFSERLEDAVARYHANAITTAEVLQELIQLAKDIRAA  939
             E L KL+NDGI++R++ NVVQ K +S+RL   + RY+  AI TA+V++ELIQ+AK+++AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  940   RQRGEESGLSDEEIAFYDALAENESAVQMMGDDALRLIAHELLVSLRENVSVDWAHRDSA  999
               R++  GL+ +EIAFYDALAENESAV+ +GD++L+ +A E+   LR + +VDW  R+S 
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1000  RARMRVLVKRILRKYGFPPDLQDSAVQTVLQQAEALSSGWS  1040
             RAR+R+LV++ L KY +PPD    AV+ +L+QAE +S++W+
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

90) hsdR in NC_017349


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  807 bits (3055),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1056 (46%), Positives = 754/1056 (72%), Gaps = 40/1056 (3%)

Query  5     FSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRINPELN  64
             +SEDDLEQ++L WF G G  V +G D + +G    R S  DV +   +   L  +NP+L 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    NSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFDNPGN  124
              S +++ +  I+   SP ++ +N++FH+++ +G+ VE Y+ D+  I+D   + DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  125   NDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQIETYKMRT  184
             N F  VNQ+++      +RPD++ +INGLP+ VIELK++++ + +I  +++Q++TYK   
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  185   PQLFNHNAVLVTSDGINTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGMLNKE  244
             ++LF  N  LV SDG N++ GSLTAD +RF+ W+T     + +   + L+ +++G +N+E
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  245   VLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSE----------HGDG  294
             +LLD IR F+LF+ DGK  ++K +AAYHQ+ AV  AV+ ++ A++            G  
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   KGGVIWHTQGSGKSLTMVFFSGKLIQK--LNNPTLVVVTDRNDLDNQLYGTFVKSKGRSG  352
             K+GV+WHTQGSGKS++M  ++GKL+Q+  +NNPT+VVVTDRNDLD QLY TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  353   KGLLRQTPKQAESRKELKELLSV-ESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMAD  411
             K+LL+Q P+QA +R +L+E+L+  ESGGI+FTT+QKF P +G+ +  AL  R N+VV++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  412   EAHRTQYGFKATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYI  471
             EAHR+QYG+ AT  +K+ + KYGYAK +RDALPNASF+GFTGTPVSS DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATL-DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   DVYDMTQSVEDGSTVKIYYESRIIPLNL-PTDLD-IDDAYDVITSGQEEDTKSRLKSKWS  529
              +YD+ ++V+DG+TV IYYESR+  L+L   +L+ +    D +  ++E D K + K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   RIEALSGAEKRVHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589
             R+E L G+E R+  +A+D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   DDDNKGVIKVVMTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFD  649
             +D +KG IK++MTGS+SD +++Q HI  K+ ++ LE R KD+ND L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDS-DR  708
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YTDS ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   EQTGIDTEKALELMLMKYDIIQDMLYNH------DYSDFESEDQLNRYNAISNTMDYIIG  762
              QT ID+  A+ ++L K D+I++M+ +       DYS FE++ Q    + + ++ +YI+G
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILG  769

Query  763   LGEKERERFVTTVTELSKAFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKRK  822
             L++  + R+   V  L+KA +LC+T + A+ L+ E+AFL AVK +++KL       + +K
Sbjct  770   LDD-GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL-----TTTDKK  823

Query  823   KTPAEIEAEINQLISKSVVTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVEL  882
              + +E ++ +++++ +++V+  V D++   G+++P+I++LSD+FL +V  + Q+N+AVEL
Sbjct  824   FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  883   LNKLLKGQVKSLMKTNATVSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKE  942
             L+KLL++ + +  + N    K++S+ L   + +YNNR+IE+++VIEELIQMAKE++    
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  943   RGKELGLSTEEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKNNMSVDWSKRESAKA  1002
             R+  LGL+ +EIAFYDALA +E+A   +GD  L+ +A E+T  ++++ +VDW  RES +A
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1003  KMRVQVRRLLKKNGYPPDLQKMAVEQVVEQAELMAS  1038
             ++R+ VR+ L K  YPPD    AVE ++ QAE++++
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

91) Amico_0451 in NC_014011


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  806 bits (3051),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1055 (47%), Positives = 747/1055 (71%), Gaps = 51/1055 (4%)

Query  20    GYEVVFAPDIAPEGTYPERTYYSDVVLTERLKEALARINPDLPDDALEDGFRQIMFPQSP  79
             G EV+ +PDIAP+G  P R  + DV L   ++  L  +NP+LP   +++ + +I  P+SP
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  80    SLIMNNKTFQKMITDGIDVQVKQEDGGYRTEKAYIFDLEAPSNNDFLVANQFTVVEHDKE  139
              ++++NK+F+ ++  G+ V+ K++D   + + A + D++ P NN F V NQ ++    + 
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYKRDDKVIH-DTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  140   KRPDIVVFVNGIPLVVIELKNASDENVDITDAFNQLQTYKKTIPSLFTYNSFTVISDGVN  199
             +RPD++ ++NG+P+ VIELK++SD N DI  AFNQLQTYK+ I+ LF  N   VISDG N
Sbjct  138   RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  200   ARAGTLTSNEDRFMAWRTIDGDDVAPLCIPQLEVLIKGMFLKDRFLDIIRHFVLFQSDGK  259
             AR G+LT++E+RF++W+TI  +D  PL   QLE +++G F ++ +LD IR F+LF+SDGK
Sbjct  198   ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  260   EIKKILAGYHQYHAVNKALQST----------QRATMEQGDRRVGVIWHTQGSGKSLSMV  309
              + K +A+YHQ+HAV  A+++T           R+ +  G ++ GV+WHTQGSGKS+SM 
Sbjct  258   RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMC  317

Query  310   FYAGKLVIDEELENPTIVVITDRNDLDDQLFSTFLKSEELLRNTPVQAQDRVHLRELLNN  369
              YAGKL+ + E++NPTIVV+TDRNDLD+QL++TF ++ +LL++ P QA +R +LRE+L  
Sbjct  318   CYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAA  377

Query  370   RTSGGIIFTTIQKFAPFTNETNGEVIDFNRWGRVAENSSPYTANTMLTDRRNVVVIADEA  429
             R SGGIIFTT+QKFAP+  E                      A+  L  R N+VVI+DEA
Sbjct  378   RESGGIIFTTVQKFAPLDGEQ---------------------AHPALNLRDNIVVISDEA  416

Query  430   HRSQYGFGAEIVMGKTEADVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRVVFGDYI  489
             HRSQYG++A +     ++  KYGYAK MRD+LPNAS++GFTGTPV   DK+TR VFGDY+
Sbjct  417   HRSQYGLSATL---DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  490   DIYDMTRAVEDGTTVKIFYESRIAKLDLPEEMKPQIDSEYEEITEYQEYSQKERLKSKWA  549
              IYD+  AV+DG+TV I+YESR+AKLDL +E    + S+ +++ E +E  QKE+ K+ W+
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  550   RLEAIVGTEQRIKQIAKDIVEHFEKRDLAQENEGGKGMIVAMSRRIAIDLYKEIVALRPD  609
             RLE +VG+E RIKQ+A D+V HF  R+ + +   GK+MIVAMSR I + LY+ +VALRP+
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICVRLYNALVALRPE  590

Query  610   WHSDDLMSGKIKVVITGSSSDPSDWQAFIGSKADRETLAKRMKDRNDELKLVIVRDMWLT  669
             WHS+D+  G IK+++TGS+SD  + Q+ I +K  +  L  R KD ND LK+VIVRDMWLT
Sbjct  591   WHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLT  650

Query  670   GFDVPSMHSMYVDKPMSGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKNALAQYTES  729
             GFD P  H+MY+DKPM GHNLMQAIARVNRVFK+K GGLVVDYIGIA++LK+AL  YT+S
Sbjct  651   GFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDS  710

Query  730   DKKT-TGVDTEVASQVLLEKYDLIKELL------HGHSYEKFFTGRQSEKMQAITETMDF  782
               K  T +D+  A  VLLEK D+I  ++       G  Y  F    +++  + + ++ ++
Sbjct  711   KGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANY  766

Query  783   IIGLREDRKNDYINLVTEMARAYSLCATTDTAETLNVEVGFHKAVRACLHKIMSDGSKKK  842
             I+GL +++K  Y+++V  + +A SLC+T D A  L+ E++F  AV+  + K ++   KK 
Sbjct  767   ILGLDDGKKR-YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIK-LTTTDKKF  824

Query  843   TTSQLDNELNQLISKAISSNEVVDILSSVGLSKPNIAILSDEFLEEVKGMRQKNLAVELL  902
             + S+ ++ L++++ +AI +  V D+++  GL KPNI++LSDEFLEEV+ M Q+NLAVELL
Sbjct  825   SQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  903   NRLLKGSIKNFSRRNLVQSKRFSEMLEASIRKYQNRTIETTQVIMELIELAKEISGAEKR  962
             ++LL+++I   +  N+VQ K++S+ L A + +Y+NR+IET+QVI ELI++AKE+ +A  R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  963   GESTGLTSDELAFYDALADNESARDVMGDEILMQIAKDLTLSIRRNISVDWAIRENVQAK  1022
             +++ GL +DE+AFYDALA+NESA   +GDE L ++A ++T  +R++ +VDW +RE+V+A+
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1023  MKMDIKRLLKRYNYPPDKTPQAVDTVIAQAKLMCQ  1057
             +++ +++ L +Y+YPPDK+ +AV+ ++ QA ++ +
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

92) SAA6159_00056 in NC_017338


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  806 bits (3052),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1057 (46%), Positives = 753/1057 (72%), Gaps = 42/1057 (3%)

Query  5     FSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRINPELN  64
             +SEDDLEQ++L WF G G  V +G D + +G    R S  DV +   +   L  +NP+L 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    NSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFDNPGN  124
              S +++ +  I+   SP ++ +N++FH+++ +G+ VE Y+ D+  I+D   + DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  125   NDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETYKMRI  184
             N F  VNQ+++      +RPD++ +INGLP+ VIELK++++ + +I  +++QL+TYK  I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  185   PQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGMLNKD  244
             ++LF  N  LV SDG N++ GSLTAD +RF+ W+T     + +   + L+ +++G +N++
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  245   VLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAIDRAIEATSE----------HGDG  294
             +LLD IR F+LF+ DGK  ++K +AAYHQ+ AV  A++ +I A++            G  
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   KGGVIWHTQGSGKSLTMVFFSGKLIQK--LNNPTLVVVTDRNDLDNQLYGTFVKSKGRSG  352
             K+GV+WHTQGSGKS++M  ++GKL+Q+  +NNPT+VVVTDRNDLD QLY TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  353   KGLLRQTPKQAESRKELKELLSV-ESGGIVFTTMQKFEPEEGQVTMDALTDRKNVVVMAD  411
             K+LL+Q P+QA +R +L+E+L+  ESGGI+FTT+QKF P +G+ +  AL  R N+VV++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  412   EAHRTQYGFKATYDEKGQGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYI  471
             EAHR+QYG+ AT D  G + KYGYAK +RDALPNASF+GFTGTPVSS DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATLDKDG-AYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   DVYDMTQSVEDGSTVKIYYESRIIPLNL-PTDLD-IDEAYDVITSGQEEDTKSRLKSKWS  529
              +YD+ ++V+DG+TV IYYESR+  L+L   +L+ +    D +  ++E D K + K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   RIEALSGAEQRVHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIVRLKPEWHS  589
             R+E L G+E R+  +A+D+++HF +R+ +M+GK+MIV+MSR I V LY+ +V L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   DDDDKGVIKVVMTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFD  649
             +D +KG IK++MTGS+SD +++Q HI  K+ ++ LE R KD+ND L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFIDKPGGLIVDYVGIAESLKEALKEYTDS-DR  708
              P  HTMYIDKPM+GHNLMQAIARVNRVF DKPGGL+VDY+GIA+ LK+ALK YTDS ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   EQTGIDTDKALELMLMKYDIIQDMLYNHDSSD-------FESEDQLNRYNAISNTMDYII  761
              QT ID+  A+ ++L K D+I++M +   ++D       FE++ Q    + + ++ +YI+
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGM-FAKTTTDPGFDYSAFENNPQ----HVLLDAANYIL  768

Query  762   GLGENERERFVTTVTELSKAFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKR  821
             GL ++ + R+   V  L+KA +LC+T + A+ L+ E+AFL AVK +++KL       + +
Sbjct  769   GL-DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL-----TTTDK  822

Query  822   KKTPAEIEAEINQLISKSVVTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVE  881
             K + +E ++ +++++ +++V+  V D++   G+++P+I++LSD+FL +V  + Q+N+AVE
Sbjct  823   KFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVE  882

Query  882   LLNKLLKGQVKSLMKTNTTVSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEK  941
             LL+KLL++ + +  + N    K++S+ L   + +YNNR+IE+++VIEELIQMAKE++   
Sbjct  883   LLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAM  942

Query  942   ERGKELGLSTEEIAFYDALASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAK  1001
              R+  LGL+ +EIAFYDALA +E+A   ++D  L+ +A E+T  ++++ +VDW  RES +
Sbjct  943   ARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVR  1002

Query  1002  AKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMAS  1038
             A++R+ VR+ L KY YPPD    AVE ++ QAE++++
Sbjct  1003  ARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

93) SCE1572_29155 in NC_021658


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  805 bits (3048),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/1035 (51%), Positives = 749/1035 (73%), Gaps = 26/1035 (2%)

Query  10    VTESDVEELALQTFARLGYECLHGPDIAPGEPAAERATYADVVLRGRLDEALRRLNPGVP  69
             ++E D+E+L+L  FA  G E LHGPDIAP+   + R ++ DV LR  +   L  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  70    QTAIHEALRKILVPDAPSLLQNNRRFHRLLRDGVEVEIATPGGEVRGERLRLFDFDDIEE  129
              + ++E + +I  P++P ++ +N+ FH+LL  GV VE    +  +++  L L DF++ E+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  130   NEYLVVNQLTVIEGPHRHRRPDIVVFVNGVPLAVVELKSPADENATVQGAFNQLQTYKAE  189
             N + VVNQ++ I G  + RRPD++ ++NG+P+AV+ELKSP+D NA + +AFNQLQTYK E
Sbjct  121   NRFTVVNQVA-ISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  190   IPSLFVYNELLVVSDGTTARLGTLTSSWERFGPWRTVDGSAVAARGTLEMITLLEGVFDR  249
             I+ LF+ NE LV+SDG  AR+G+LT+  ERF PW+T+      +    ++  +++G F+R
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  250   ARLLDLVRHfvvfeedrdevvKKIAGYHQFHAVRTAVEETV----------RATRPGGDR  299
               LLD +R F++FE D   ++KKIA+YHQFHAVR AV+ T+          R+    G +
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  300   KVGVVWHTQGSGKSLTMTFYAGKVVLDPAMENPTIVVITDRNDLDDQLFGTFGRCHELLR  359
             K GVVWHTQGSGKS++M  YAGK++ ++ M+NPTIVV+TDRNDLD+QL+ TF +  +LL+
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  360   QKPVQARDRSHLRELLQV-AAGGVVFTTVQKFLPEEKGDRFPRLSERRNVVVIADEAHRS  418
             Q P QA +R +LRE+L    +GG++FTTVQKF P +  +  P L+ R N+VVI+DEAHRS
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  419   QYGFKSKLVKTKDGGYLVPGFAQHMRDALPSASFIGFTGTPIEAVDKDTRAVFGDYISVY  478
             QYG+ + L   KDG+Y   G+A+HMRDALP+ASF+GFTGTP+ + DKDTRAVFGDY+S+Y
Sbjct  420   QYGLSATL--DKDGAYKY-GYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  479   DIQRAVEDGATVPIYYESRVAKLDLNDDLKKVIDDefeevteqeeesrkeKLKSKWAALE  538
             DIQ AV+DGATVPIYYESR+AKLDLN++    +  + +++ E+EE  +KEK K+ W+ LE
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLE  536

Query  539   AVVGAEKRVNMIAEDLIRHFEARVEAMEGKAMVVCMSRRICVDMYAALVALRPAWHSPDD  598
              +VG+E R++ +A DL++HF AR  +M+GKAM+V MSR ICV +Y ALVALRP WHS D 
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  599   DKGAIKVVMTGSASDPQPWQQHIRNKARLRDLADRLKDPADPLKVVIVRDMWLTGFDAPC  658
             +KG IK++MTGSASD +  Q HI NK   + L  R+KD  DPLK+VIVRDMWLTGFDAPC
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  659   LHTLYVDKPMQGHGLMQAIARVNRVFRDKPGGLVVDYLGLAENLRKALATYTESGGKGDP  718
              HT+Y+DKPM+GH LMQAIARVNRVF+DKPGGLVVDY+G+A++L++AL TYT+S GKG+ 
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQT  716

Query  719   ARDHARAVPRMMEMIEVCRGLF------HGFDVMAFVNGSPIERLMLLPAAQEHIFGLED  772
             + D   A + ++E ++V +G+F       GFD  AF N +  ++++L   A + I+GL+D
Sbjct  717   TIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNP--QHVLL--DAANYILGLDD  772

Query  773   GRDRLVQAVTELSRSFALAVPHDDALAVRDEVAFYQAVKAAVVKTSLSASGKSEAEVELA  832
             G+ R  + V  L+++ +L    D+A +++ E+AF  AVK A++K + +    S++E +  
Sbjct  773   GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL  832

Query  833   IRQIVSKAISTDGVMDVFAAAGLKRPDLSILSEEFLADVKAMQHKNVAVELLRKLLHDEL  892
             + +I+ +AI + GV DVFA AGL +P++++LS+EFL +V+ M ++N+AVELL KLL+D +
Sbjct  833   LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGI  892

Query  893   KVRRRTNLVQSEAFSDKLEKTIARYRNRGVETAQVIEELIRMARDVKVAQKRGEDLKLND  952
               R   N+VQ   +SD+L   + RY NR++ETAQVIEELI+MA++ + A  R++ L LN 
Sbjct  893   HARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNP  952

Query  953   AELAFYDALGANDSAVQVLGDAVLAQIARELTETIRNSVTIDWAVKEtvraklrtlvrrr  1012
              E+AFYDAL+ N+SAV+ LGD  L ++A E+T  +R+S T+DW V+E+VRA+LR LVR+ 
Sbjct  953   DEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  1013  lkkHGYPPDKTDDAV  1027
             L K  YPPDK+ DAV
Sbjct  1013  LLKYKYPPDKALDAV  1027

94) WQG_11930 in NC_020515


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  805 bits (3047),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 505/1065 (48%), Positives = 760/1065 (72%), Gaps = 49/1065 (4%)

Query  2     LINENTIEQSAIATLQSLGWDYTYGKTILAGLEHEWRERAAEVILKPLLAQAIAKFNPNL  61
             +++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  62    PAYEVENVVAQVCRAESGDLAERNRQAYDWLRNGVKITYQLDGEQVSEVVQLIDFQRPEN  121
             PA   +++++++ R+ES D+   N+   + L +GV + Y+ D+  + +   L+DF++PEN
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  122   NDFRIVNQLDIGGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  181
             N F +VNQ+ I+G K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  182   SDLFVFNQALVISDGIVARIGSLTADLDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  241
             SDLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G   
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFN  238

Query  242   PQNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------  289
              + LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            
Sbjct  239   RELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG  297

Query  290   NRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEAL  349
             ++K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  L
Sbjct  298   SKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDL  357

Query  350   LKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAH  409
             LKQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAH
Sbjct  358   LKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAH  417

Query  410   RSQYGFNQKIDHKGQYKEGYAKHLRSALPHASFIGFTGTPIALDDRDTQEVFGKYVSIYD  469
             RSQYG++  +D  G YK GYAKH+R ALP+ASF+GFTGTP++ +D+DT+ VFG YVSIYD
Sbjct  418   RSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  470   FEDAVEDGATVPIIYEPRQISLG-ESREFAKVMEEAQQLIDDDENSDNFRLR------EK  522
             ++DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E  ++ + +      EK
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  523   LHSVDSRLQKMAEDIIAHYDERTKQQDGKAMIVVMSRAICVKLYDKITVLRPEWHSNDVH  582
             L + ++R++++A D++ H+  R    +GKAMIV MSR ICV+LY+ +  LRPEWHS+DV+
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  583   QGSIKIVMTSNASDPAEWQVH---NQDKKTLEKRFKDPDDPLKIVIVRDMWLTGFDAPCC  639
             +G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPLKIVIVRDMWLTGFDAPCC
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  640   NTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKE  699
             +TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK 
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKG  714

Query  700   KPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNTILQAANHILA  759
             +   D    +  ++E + VI+G FA    + + D +    + + P+  + +L+AAN IL+
Sbjct  715   QTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILG  769

Query  760   LDRIQPADNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIK  819
             LD               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK
Sbjct  770   LD-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIK  816

Query  820   NSTAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNS  878
              +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ 
Sbjct  817   LTTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREM  874

Query  879   PTKDLWLSAMERYLAAQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelial  938
             P ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +
Sbjct  875   PQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQM  934

Query  939   akefeaRQKRGEALGLNPAEMAFYDALARNESAVREMGDEVLMNLAKDITDKLRKSVTVD  998
             AKEF+A   R++ALGLNP E+AFYDALA NESAVRE+GDE L +LA ++T +LRKS TVD
Sbjct  935   AKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVD  994

Query  999   WQYKDSVRAKMRTLIRIALRSYKYPPDLQAEAIEFVLQQAEEIAG  1043
             WQ ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  995   WQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

95) PP1Y_AT2851 in NC_015580


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  804 bits (3043),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1039 (50%), Positives = 746/1039 (72%), Gaps = 39/1039 (3%)

Query  21    GWNYLHGSVIAPDGVAAERQAFSDVILLPRLEKAVADLNPTLPeaaraeairrLLTSETG  80
             GW+ LHG+ IAPDG  + R +F DV+L P + K +  LNP LP +   E I R+  +E+ 
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  81    SLVEENRRIHRLLTDGVPVEYRNTDGRIVGDKVWLLDLDKVESNDWLVVNQFTVVEGSQN  140
              +V  N+ +H+LL  GVPVEY+  D++++ D   L+D++  E+N   VVNQ ++    Q 
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYKR-DDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  141   RRPDVILFVNGLPLAVLELKNAAAENATISDAFHQLQTYLAQIPSLFRTNAVLITSDGIE  200
             RRPDVI ++NGLP+AV+ELK+++  NA I  AF+QLQTY  +I+ LF  N  L+ SDG +
Sbjct  138   RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  201   ARIGSLAADQERFMPWRTVTGEDFAHRGQPELETLLRGVFTRANILALIRDFIVFGDAGA  260
             ARIGSL+AD+ERF+PW+T++ ED     + +LE ++ G F R  +L  IR FI+F   G 
Sbjct  198   ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  261   GPFKIIAGYHQFHGARKAIREAVDASS----PL------GDRKIGVIWHTQGSGKSFLMA  310
               +K IA+YHQFH+ R A+  ++ AS+    PL      G +K GV+WHTQGSGKS+ M 
Sbjct  258   RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMC  317

Query  311   FFAGLAVKSPELSNPTIVVLTDRNDLDDQLASTFSLCKDLLRQNPEQAESREDLQRLLA-  369
              +AG  ++ +E++NPTIVV+TDRNDLD+QL +TF   KDLL+Q+P+QA +R++L+ +LA 
Sbjct  318   CYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAA  377

Query  370   RASGGVIFTTIQKFSPERGEESFPMLTDRRNVIVMADEAHRSQYGFDAKLDVKTGARRYG  429
             R SGG+IFTT+QKF+P  GE++ P L  R N++V++DEAHRSQYG+ A LD K GA +YG
Sbjct  378   RESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYG  436

Query  430   YAHYIRQAMPNASFIGFTGTPIEAADVNTPAIFGRYIDIYDISRAVEDGATVPIYYESRL  489
             YA  +R+A+PNASF+GFTGTP+ + D +T A+FG Y+ IYDI  AV+DGATVPIYYESRL
Sbjct  437   YAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRL  496

Query  490   ARIELDEDEKPLIDAEIEALVEDDTLTEAEKAKAKWSTVEALVGSDKRLKQIAADMVTHL  549
             A+++L+++E   + ++++ LVED+   + EK+K+ WS +E LVGS+ R+KQ+AAD+V H+
Sbjct  497   AKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHF  556

Query  550   EARTDGTEYKGMAVCMSRRICVALYNEIIALRPDWHSDDDADGVIKIVMTGAASDPLSWQ  609
              AR    + K+M V MSR ICV LYN ++ALRP+WHS+D   G IKI+MTG+ASD    Q
Sbjct  557   AARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQ  616

Query  610   QHIGNKRRRDGLAKRARDPKDPLRLVLVRDMWLTGFDAPCMNTMYVDKPMRGHGLMQAIA  669
              HI NK+ +  L  R +D +DPL++V+VRDMWLTGFDAPC +TMY+DKPMRGH LMQAIA
Sbjct  617   PHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIA  676

Query  670   RVNRVFRDKPGGLIVDYIGIAQNLKKALSDYTDS-DQEKTGIDEADAVAALLERYEIVSG  728
             RVNRVF+DKPGGL+VDYIGIA++LK+AL  YTDS ++ +T ID  DA A LLE+ +++ G
Sbjct  677   RVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHG  736

Query  729   IF------HGFDYLPGIHGAPMERLQCLAGAIDWVLKWAEIEAGKAQSPEDKKKAHRRYL  782
             +F       GFDY ++++  P    + L +A + +L    ++ GK           +RY+
Sbjct  737   MFAKTTTDPGFDY-SAFENNPQ---HVLLDAANYIL---GLDDGK-----------KRYF  778

Query  783   DLVLELTKAYALASASDEAREIRDEIGFFQAVRAAIAKSTATG-KLSQADKTFAVQQLID  841
             D+VL L KA +L S+ DEA+ ++ E++F+ AV+ AI K T+T+ K+SQ++K   + +++D
Sbjct  779   DVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILD  838

Query  842   RAVASAEIVDILKVAGIDSPDISILSEEFLLEIQGMekknlalealkkllageITSRMRT  901
              A+ ++ + D++ +AG+D P+I++LS+EFL E++ M ++NLA+E L KLL + I +R   
Sbjct  839   NAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNN  898

Query  902   NVVESRAFSRRLEDAVARYHAGALSAAEMINELIALAKDMKAAQRRGEDQGLSPEEIAFY  961
             NVV+ + +S RL   + RY+  A+ +A++I+ELI +AK+ +AA  R++  GL+P+EIAFY
Sbjct  899   NVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFY  958

Query  962   DALAENESAVEAMGSEQLRLIAHELLEQLRQNVTVDWHHRESARARMRVLVKRILKRYGY  1021
             DALAENESAV  +G E L+ +A E+  QLR++ TVDW+ RES RAR+R+LV++ L +Y Y
Sbjct  959   DALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKY  1018

Query  1022  PPDLADEAVQTVLAQAEVL  1040
             PPD A +AV+ +L QAEV+
Sbjct  1019  PPDKALDAVELILKQAEVV  1037

96) Spica_2695 in NC_015732


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  804 bits (3045),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1075 (46%), Positives = 760/1075 (71%), Gaps = 48/1075 (4%)

Query  6     LTESAIEDLAIKLFKSLGYHHLYGPDSAPEGKHPERSSFEDVILVNRLRDAVKKINPHIP  65
             L+E  +E+L++  F + G + L GPD AP+GK+P R SF+DV+L   +R  +  +NPH+P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  66    QQSLDDAIRQVLRFPSQELIANNQSFHRLLTEGVKISYHKDGSERGDLVWLIDFKHPENN  125
                +D+ I ++ R  S +++ +N++FH+LL  GV + Y +D+    D   L+DF+HPENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  126   EFVVVNQFAVIENHQNKRPDVVLFVNGLPLVVIELKNAADENATIQSAYNQIQTYKQAIP  185
              F VVNQ A+    Q +RPDV+ ++NGLP+ VIELK+++D NA I +A+NQ+QTYK+ I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  186   GFFTYNEIIVISDGLEARSGSLSAGLDRFVAWKSVDGRIEASSLESQLTTLIKGMLTPLT  245
             ++F  NE +VISDG +AR GSL+A+ +RF++WK++    + + LE QL  +++G +    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  246   LIDIIRHFIVYEASKHEDPETGLTVIRTVKKIAAYHQYYAVNRAVASTIRAAGYEQAAQL  305
             L+D IR FI++E+             R +KKIAAYHQ+ AV  AV +TI A+    +  L
Sbjct  242   LLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATIVAST---GKFL  288

Query  306   PVAAPWPASLKEDPEAYGLPSVREQPVHDKKAGVIWHTQGSGKSLSMVFYTGKVV--LTL  363
             P+     +++K ++               KKAGV+WHTQGSGKS+SM  Y+GK++    +
Sbjct  289   PL----RSNIKPGS---------------KKAGVVWHTQGSGKSISMCCYAGKLLQQAEM  329

Query  364   DNPTVVVITDRNDLDDQLFTTFAASKQLLRQEPVQAESRDHLKQLLRV-ASGGIVFTTIQ  422
             +NPT+VV+TDRNDLD+QL+TTF  +K+LL+QEP QA +RD+L+++L    SGGI+FTT+Q
Sbjct  330   NNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQ  389

Query  423   KFQPDEGN-VYDVLSNRNNIIVIVDEAHRTQYGFQAKVDANTGAITYGFAKYLRDALPNA  481
             KF P +G+     L+ R+NI+VI DEAHR+QYG+ A +D + GA  YG+AK +RDALPNA
Sbjct  390   KFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLDKD-GAYKYGYAKHMRDALPNA  448

Query  482   TYIGFTGTPIEKTDRNTPAVFGNYIDIYDIAQAVADGTTVRIFYESRLAKIALSDEG-KK  540
             +++GFTGTP+   D++T AVFG+Y+ IYDI +AV DG+TV I+YESRLAK+ L++E    
Sbjct  449   SFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEA  508

Query  541   lvqeldeellqdeMPEAQKAKAKWTQLEALVGSQERLKQIANDIVTHFEARQEVFEGKGL  600
             L  ++D+ + ++E  + +K+K+ W++LE LVGS+ R+KQ+A D+V HF AR+   +GK++
Sbjct  509   LSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAM  568

Query  601   IVTMSRRIAAALYDEIIHIRPAWHSDDLKKGAIKVVMTSASSDGPEIAKHYTSKEDRRLL  660
             IV+MSR I   LY+ ++ +RP WHS+D+ KG IK++MT+++SD  ++  H  +K+ ++ L
Sbjct  569   IVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRL  628

Query  661   AERMKDPQDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGG  720
               R KD +D LK+VIVRDMWLTGFD PC HTMYIDKPM+GH LMQAIARVNRV+KDKPGG
Sbjct  629   EARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGG  688

Query  721   LIVDYLGIAADLKEALSFYADNGGKGDPALLQEEAVRLMLEKYEIVTDLL------HGFA  774
             L+VDY+GIA +LK+AL  Y+D+ GKG+ ++   +A  ++LEK +++ +++       GF 
Sbjct  689   LVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD  748

Query  775   YKHYCTADTAAKLSIILEAEEFILGLENGRKRYIDEVTALSKAFAIAIPDEQALAIKDEV  834
             Y  +          ++L+A ++ILGL++G+KRY+D V AL+KA ++    ++A +++ E+
Sbjct  749   YSAF----ENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKEL  804

Query  835   AFFQAVKSRLVKFAGTSGGKTNEEIETAIRQVIDKALVTGEVIDVFDAAGIKKPDISILS  894
             AF+ AVK  ++K++ T    ++ E ++ + +++D+A+V+  V DVF  AG+ KP+I++LS
Sbjct  805   AFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLS  864

Query  895   EEFLLEVKNMKHKNIAMEVLKKILNDEIKARTRTNLVQSKSLLELLENAIKRYQNQVLTA  954
             +EFL EV++M ++N+A+E+L K+LND I ART  N+VQ K   + L   + RY+N+ + +
Sbjct  865   DEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIET  924

Query  955   AQLIEELIDLAKDIKKMDEEPEAMGLSEFEYAFYSAVANNESARELMGKDKLRELAVALY  1014
             AQ+IEELI++AK+++      +A+GL+  E AFY A+A+NESA   +G + L+ LA+ + 
Sbjct  925   AQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVT  984

Query  1015  EQVRQNASIDWTIKESVRSKLKVAVKRTLKRYGYPLDMEALATETVLKQAELIAD  1069
              Q+R+++++DW ++ESVR++L++ V++TL +Y YP D    A E +LKQAE++++
Sbjct  985   AQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

97) Dacet_2560 in NC_013943


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  802 bits (3034),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/1055 (48%), Positives = 741/1055 (71%), Gaps = 44/1055 (4%)

Query  4     LIEDTLEYVLIDLFKELGYDYAFAPDFTMVDDDGGDYERISTDEVILTKRLKRKLMEINP  63
             L ED LE + ++ F   G +   +PD   +  DG +  RIS ++V+L   ++++L  +NP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPD---IAPDGKNPLRISFHDVFLRPIFRKQLETLNP  58

Query  64    EVGEEQIDEAIKKLSNPESVKLIDNNRAFHKYVTDGISIPYHEDGETKTAIINLFDFKDI  123
             ++    +DE I +++ PES  ++ +N+AFH  +  G+++ Y  D+        L DF++ 
Sbjct  59    HLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHP  118

Query  124   SNNDWLVANQFTVTEAKEKRRPDVIVFVNGLPLAVIELKNPSDEKATMFDAFTQLQNYKN  183
              NN   V NQ +++ +K+ RRPDVI ++NGLP+AVIELK+PSD +A +  AF QLQ YKN
Sbjct  119   ENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN  178

Query  184   FIPNLFNYNEILIASDGYSATAGSLTADWERFMPWKTVNGEKDPKGMI--QLEVLIRGMF  241
              I++LF  NE L+ SDGY+A  GSLTAD ERF+PWKT++ E D K ++  QLE ++ G F
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDD-KPLLEHQLENVVNGFF  237

Query  242   DKERFLDIIRNFIVFEVSDDKIIKKMAGYHQYHAVNKALSRTVEATSEK----------G  291
             ++E +LD IR FI+FE  + ++IKK+A+YHQ+HAV  A++ T+ A++ K          G
Sbjct  238   NRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG  297

Query  292   DKRIGVVWHTQGSGKSLSMVFYSGKVVQKLELSNPTLVVLTDRNDLDEQLFGNFSLCSDL  351
              K+ GVVWHTQGSGKS+SM  Y+GK++Q+ E++NPT+VV+TDRNDLD QL+  F    DL
Sbjct  298   SKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDL  357

Query  352   LRQKPVQATSRAHLRELLNV-ASGGIVFTTIQKFFPKEDEDSHPELSPRRNIIVMADEAH  410
             L+Q P QA++R +LRE+L    SGGI+FTT+QKF P ++E++HP L+ R NI+V++DEAH
Sbjct  358   LKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAH  417

Query  411   RSQYDFID----------GFARHMRDALPGAAFIGFTGTPIETSDKVTTSVFGSYIDIYD  460
             RSQY++            G+A+HMRDALP A+F+GFTGTP+ + DK T +VFG Y+ IYD
Sbjct  418   RSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  461   MEDAVNDGATVRIYYEARLAKIDFDEVEKPKVDPEFEQVTEDQEKFEKQKLQAKWTALEA  520
             ++DAV+DGATV IYYE+RLAK+D+++ E   + ++ +++ ED+E  +K+K ++ W+ LE 
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  521   LVGATSRLELVAKDIVEHFEDRLSAMDGKAMVVCMSRRICVELYNEIAKLRPDWHDEDDK  580
             LVG+ +R+  VA D+V HF  R ++M+GKAM+V MSR ICV LYN +  LRP+WH ED  
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  581   QGFIKIIMSGSASDKEEWQPHIRTKQQREELANRFKKPDTDFKLVIVRDMWLTGFDAPCM  640
             +G IKIIM+GSASDKE+ QPHI  KQ +  L  RFK  +  +K+VIVRDMWLTGFDAPC 
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  641   HTMYVDKPMGGHNLMQAIARVNRVFKDKPGGLVVDYIGIADDLKNAMRNYTASGGKGKSH  700
             HTMY+DKPM GHNLMQAIARVNRVFKDKPGGLVVDYIGIA++LK+A++ YT S GKG++ 
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  701   HDKDEAAAYMMEKFEQVIDLM------HDFDYEAILHSKEKERLDGIYEAMEYVLSIDR-  753
              D  +A A ++EK++ + ++        +FDY A+    E++  + + +A +Y+L++D  
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLDDG  773

Query  754   KMDFIKMVTELSRAFALAVPAPQTVEVRDYLALFQEIKAAIIKNTITPEKKSPDELNTAL  813
             K  ++ +V  L++A +L     ++  ++  LA++  +K AIIK T T  K S  E N+ L
Sbjct  774   KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLL  833

Query  814   KQLVSKAVTANGVVDVFGAAGLDKPEISILSDEFLAEVKEYPYKNLAVEMLAKLLADEIK  873
              +++ +A+ A GV DVF+ AGLDKP+I++LSDEFL EV+E P +NLAVE+L KLL D I 
Sbjct  834   SRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIH  893

Query  874   IKLKRNVVKSRSFIERLEESMKNYQNRSIEAAMVIQHLIDLAKEMRKEAERGNDLGLSDD  933
              + + NVV+ + + +RL   +  Y+NR+IE+A VI++LI++AKE +    R++ LGL+ D
Sbjct  894   ARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPD  953

Query  934   EIAFYDALLTENAAFGERLLKEMGDE-LKVVAVELVQAVKKNVTIDWTKRDAVKAKLRVI  992
             EIAFYDAL  +++A     ++E+GDE LK +A+E+   ++K+ T+DW  R++V+A+LR++
Sbjct  954   EIAFYDALAENESA-----VRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRIL  1008

Query  993   VKRILRKYGYPPEASDKATQTVLEQAAALCEEWAE  1027
             V++ L KY YPP+ +  A + +L QA  + + W+ 
Sbjct  1009  VRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

98) hsdR in NC_007168


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  799 bits (3025),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1056 (46%), Positives = 753/1056 (72%), Gaps = 39/1056 (3%)

Query  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64
             ++EDDLEQ+ L W+ + + +   G +I+  G  P R S  DV L+  + K L  +N+++ 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124
             + +++  I  +T   SP+++ +N +FH+ L++G+ +E Y  +++ I +   ++DF+HP+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184
             N F  VNQ ++      +RPD++ +INGLPI VIELK++++   ++  +++QL+TYK  I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L+ ++NG +N  
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294
              LLD IRYF+LF+ DGK  I KI AAYHQ+ AV  AV+ +++AS+G           G  
Sbjct  241   LLLDYIRYFILFESDGKRLIKKI-AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411
             K+LL+Q P+QA  R +L+ +L+  ESGGI+FTT+QKF P + E   +AL  R N++V++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471
             EAHR+QYG++A  D K+ + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +D+ ED+E D K++ K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589
             R+E L G+ PR+  +A D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649
             +D +KG IK++MTGS+SD   +Q HI  K+ +  LE R KD+ND L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762
             +QT+ID+  A  ++L K DVI++M+ +      +DYS F+++ +      + ++ +Y++G
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILG  769

Query  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822
             L +D ++R++  V  L KA +LC+T   A+ L+ E+AF+ AVK +++KL    K    + 
Sbjct  770   L-DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KF  824

Query  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  825   SQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942
             ++LL++ + +  + N    K++S+ L   + +YN+R+IET++VIEELIQ+AK+++    R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++ + +VDW  R+S +A+
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038
             +R+ VR+ L KY YPPD    AVE ++ QAE+++++
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

99) Desgi_1004 in NC_021184


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  798 bits (3021),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/1082 (44%), Positives = 755/1082 (70%), Gaps = 52/1082 (4%)

Query  5     ITENAIEEFAIELLEKAGYQYIYAPDIAPDSATPERQSFEEVLLLDCLQTAVGRINPKMP  64
             ++E+ +E++++  +   G + + +PDIAPD+  P R SF++V+L   ++  +  +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    ADVREDAIKQIQRLNSPELITNNEAFHRMLTEGIKVSYQKDGNERGDYVWLIDYKNPDNN  124
             A + ++ I +I R +SP+++ +N AFH++L  G+ V Y++D++   D   L+D+++P+NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  125   DFIVTNQFTVIEKGVNKRPDIILFVNGLPLVVIELKNPADENATVKSAYKQLQTYIQAIP  184
              F V NQ ++      +RPD+I ++NGLP+ VIELK+P+D NA + +A++QLQTY + I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  185   NLFTFNAIMVISDGLEAKAGSLSAGLSRFMTWKSSDGKIEASHLIGQLETLLKGMLNKET  244
             +LF  N  +VISDG +A+ GSL+A+  RF+ WK+     + + L  QLE +++G +N+E 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  245   LLDLIRHFIVFEKSKKEDKKTGIITIQTVKKLAAYHQYYAVNRAVESTLRAAGYSFISGK  304
             LLD IR FI+FE   K          + +KK+AAYHQ+ AV  AV++T+ A+   F++ +
Sbjct  242   LLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLR  291

Query  305   HSLSIVMESPESYGVAGVKQQPVGDRKGGVVWHTQGSGKSLSMVFYTGKIV--LAMNNPT  362
                            + +K    G +K+GVVWHTQGSGKS+SM  Y+GK++    MNNPT
Sbjct  292   ---------------SNIKP---GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPT  333

Query  363   VVIITDRNDLDDQLFDTFASSKQLLRQDPVQAEDREHLKELLKV-ASGGVVFTTIQKFQP  421
             +V++TDRNDLD+QL+ TF  +K+LL+Q+P QA +R++L+E+L    SGG++FTT+QKF P
Sbjct  334   IVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP  393

Query  422   DEGN-VFEQLSVRENIIVIADEAHRTQYGFKAKTIDDRDEQGTVIGKKIVYGFAKYMRDA  480
              +G+     L++R+NI+VI+DEAHR+QYG+ A      D +G+       YG+AK MRDA
Sbjct  394   LDGEQAHPALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDA  444

Query  481   LPNATYLGFTGTPIESTDINTPAVFGNYIDVYDIMQAVDDGATVRIYYESRLAKINLSEE  540
             LPNA+++GFTGTP+ S D +T AVFG+Y+ +YDI +AVDDGATV IYYESRLAK++L++E
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  541   G-KKLVADLDEELDKDGLTETQKAKAKWTQLEALIGSADRVKQVARDIINHFEQRQEVFE  599
                 L +++D+ ++ +   + +K+K+ W++LE L+GS  R+KQVA D+++HF  R+   +
Sbjct  505   ELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMN  564

Query  600   GKAMIVSMSRRIAADLYDEIIKIKPQWHSADLKKGVIKVVMTSNSSDGPEISKHHTTKEQ  659
             GKAMIV+MSR I   LY+ ++ ++P+WHS D+ KG IK++MT+++SD  ++  H   K+ 
Sbjct  565   GKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQT  624

Query  660   RRALADRMKDPEDDLKLVIVRDMWLTGFDVPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  719
             ++ L  R KD +D LK+VIVRDMWLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KD
Sbjct  625   KKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKD  684

Query  720   KPGGLVVDYLGIASDLKKALAFYSNSGGKGDPAISQEKAVQFMLEKIEVVAQMY------  773
             KPGGLVVDY+GIA++LK+AL  Y++S GKG+ +I    A   +LEK++V+  M+      
Sbjct  685   KPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTD  744

Query  774   HGFAYENYFDADTSTKLSIILAAEEHILGLVNGKKRYIDEVTALSKAFAIAIPHEQAMDV  833
              GF Y   F+ +      ++L A + ILGL +GKKRY+D V AL+KA ++    ++A  +
Sbjct  745   PGFDYSA-FENNPQ---HVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPL  800

Query  834   KDEVSFFQAVKSRLAKFDSTGAGKTNEEMETAIRQVIDKALITEQVIDVFDAAGIKKPDI  893
             + E++F+ AVK  + K+ +T+   ++ E ++ + +++D+A+++  V DVF  AG+ KP+I
Sbjct  801   QKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNI  860

Query  894   SILSEEFLLEVKNMEHKNVALEVLKKLLNDEIKSRTKKNLIQSKALMEMLENSIKKYHNK  953
             ++LS+EFL EV++M ++N+A+E+L KLLND I +RT++N++Q K   + L   + +Y+N+
Sbjct  861   GLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNR  920

Query  954   ILTAAEVIEELIALGKDIQKMDKEPQEMGLSEYEYAFYTAIANNESARELMQKDKLRELA  1013
              + +A+VIEELI ++K++Q      + +GL+  E AFY A+A+NESA   +  + L+ LA
Sbjct  921   AIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLA  980

Query  1014  VVLFEKVKENASIDWTIKESVKAKLKVIVKRTLRKYGYPPDMQKLATETVLKQAELIAEE  1073
             + +  +++ ++++DW ++ESV+A+L+++V++TL KY YPPD    A E +LKQAE++++ 
Sbjct  981   IEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

Query  1074  LT  1075
              T
Sbjct  1041  WT  1042

100) MHH_c24310 in NC_021082


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  797 bits (3018),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 505/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VIHG FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

101) M013TW_0061 in NC_016928


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1056 (46%), Positives = 756/1056 (72%), Gaps = 39/1056 (3%)

Query  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64
             ++EDDLEQ++L W+ + G +   G +I+  +  P R S  DV L+  + K L  +N+++ 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124
             + +++  +  +T   SP+++ +N +FH+ L++G+ +E Y  +++ I +   ++DF+ P+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184
             N F  VNQ++I      +RPD++ +INGLPI VIELK++++   ++  +++QL+TYK  I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L+ +++G +N E
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294
              LLD IRYF+LF+ DGK  I KI AAYHQ+ AV  AV+ +++AS+            G  
Sbjct  241   LLLDYIRYFILFESDGKRLIKKI-AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411
             K+LL+Q P+QA  R +L+ +L+  ESGGI+FTT+QKF P + E + +AL  R N++V++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471
             EAHR+QYG++A  D K+ + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +D+ ED+E D K++ K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589
             R+E L G+ PR+  +A D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649
             +D +KG IK++MTGS+SD   +Q HI  K+ ++ LE R KD++D L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762
             +QT+ID+  A  ++L K DVI++M+ +      +DYS F+++ +      + ++ +Y++G
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILG  769

Query  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822
             L +D ++R++  V  L KA +LC+T   A+ L+ E+AF+ AVK +++KL    K    + 
Sbjct  770   L-DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KF  824

Query  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  825   SQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942
             ++LL++ + +  + N    K++S+ L   + +YN+R+IET++VIEELIQ+AK+++    R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++ +  VDW  R+S +A+
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038
             +R+ VR+ L KY YPPD    AVE ++ QAE+++N+
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

102) hsdR in NC_022442


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1056 (46%), Positives = 756/1056 (72%), Gaps = 39/1056 (3%)

Query  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64
             ++EDDLEQ++L W+ + G +   G +I+  +  P R S  DV L+  + K L  +N+++ 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124
             + +++  +  +T   SP+++ +N +FH+ L++G+ +E Y  +++ I +   ++DF+ P+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPEN  120

Query  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184
             N F  VNQ++I      +RPD++ +INGLPI VIELK++++   ++  +++QL+TYK  I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L+ +++G +N E
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294
              LLD IRYF+LF+ DGK  I KI AAYHQ+ AV  AV+ +++AS+            G  
Sbjct  241   LLLDYIRYFILFESDGKRLIKKI-AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----A  354

Query  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411
             K+LL+Q P+QA  R +L+ +L+  ESGGI+FTT+QKF P + E + +AL  R N++V++D
Sbjct  355   KDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414

Query  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471
             EAHR+QYG++A  D K+ + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  415   EAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  473

Query  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +D+ ED+E D K++ K+ WS
Sbjct  474   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWS  533

Query  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589
             R+E L G+ PR+  +A D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649
             +D +KG IK++MTGS+SD   +Q HI  K+ ++ LE R KD++D L++VIVRDMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762
             +QT+ID+  A  ++L K DVI++M+ +      +DYS F+++ +      + ++ +Y++G
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILG  769

Query  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822
             L +D ++R++  V  L KA +LC+T   A+ L+ E+AF+ AVK +++KL    K    + 
Sbjct  770   L-DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KF  824

Query  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  825   SQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942
             ++LL++ + +  + N    K++S+ L   + +YN+R+IET++VIEELIQ+AK+++    R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++ +  VDW  R+S +A+
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038
             +R+ VR+ L KY YPPD    AVE ++ QAE+++N+
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

103) F382_03180 in NC_021743


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

104) J451_03490 in NC_021739


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

105) D648_15990 in NC_020834


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

106) D650_9850 in NC_020833


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

107) N220_08970 in NC_021883


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3009),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 754/1064 (71%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             ++E+ +EQ +++ + + GW+   G  I ++  +  R    +V+L+P++ + +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQLYGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R++S D+   N+   + L +GV + Y+  +  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ ISG K  R PD+I ++NGLP+ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMTP  243
             DLF+ N+ALVISDG  ARIGSLTAD +RF PW+ +   N+  + ++E++L  +++G    
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VTDRNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFSKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

108) G432_08520 in NC_020561


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  795 bits (3011),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1074 (48%), Positives = 764/1074 (72%), Gaps = 50/1074 (4%)

Query  4     LSEAQVEQTLLEQLRGLGYVVASDEVISPDGSAPERESHDVVLLHQRLADAVLRLNPHLP  63
             LSE ++EQ  L  + G G  V  +  I+PDG  P R S + V+L+  +   +  LNPHLP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    LEARADAIRKLTQSVFPGLLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVALLDFDSPAH  123
                  + I ++T++  P+++  N+ +H LL  GV VEY  DD V+    + L+DF+ P +
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NDWLAVQQFVVIHGQVKRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTYKQQI  183
             N    V+Q  +   +  RRPDV+ ++NGLP+AVIELK+P+   A++ +AFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PALFHTNALLVTSDGIAARVGSLSADLERFMPWRTT---DGRAILEKGSPELPTLIEGVF  240
             + LF  N  LV SDG  AR+GSL+AD ERF+PW+T    D++++LE    +L  +++G F
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE---HQLENVVNGFF  237

Query  241   EKQRFLDLLRHFTVFGETGSGLAKIVAGYHQYHAVNRAIESTIRASDSWHGVAEEPASYG  300
             +++ +LD +R F +F   G  L K +A+YHQ+HAV  A+++TI AS          + + 
Sbjct  238   NRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS---------TGKF-  287

Query  301   LPSVATQSLGDRRAGVIWHTQGSGKSLLMAFYAGRLVKHPAMENPTLVVLTDRNDLDDQL  360
             LP  +    G ++AGV+WHTQGSGKS+ M  YAG+L++++ M+NPT+VV+TDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  361   FATFSMCRDLIRQTPVQAESREHLQQLLA-RASGGVIFTTLQKFG-----EVNAPLTTRR  414
             ++TF   +DL++Q P QA +R++L+++LA R SGG+IFTT+QKF+     + +++L  R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  415   NVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEATDVNTP  474
             N+VVI+DEAHRSQYG+ A +D K G   YG+AK +RDALPNASF+GFTGTP+ + D +T 
Sbjct  408   NIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  475   AVFGNYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPKLDAEVEALTEDEAVTEQE  534
             AVFG+Y+ IYDI  AV+DGATVPIYYESRLA+++L+++E   L ++V+ L EDE   ++E
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKE  526

Query  535   KLKAKWATVEQLVGSEKRVALVAKDLVAHFEDRLSALDGKAMVVCMSRRICVALYDEIVK  594
             K K+ W+ +E+LVGSE R+  VA DLV HF  R ++++GKAM+V MSR ICV LY+ +V 
Sbjct  527   KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVA  586

Query  595   LRPDWHSTDDNAGAIKIVMTGAASDPPEWQQHIGNkarrdllakrardakdPLKLVIVRD  654
             LRP+WHS D + G IKI+MTG+ASD  + Q HI NK  +  L  R +D +DPLK+VIVRD
Sbjct  587   LRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRD  646

Query  655   MWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQSLKSALAQ  714
             MWLTGFDAPC HTMY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA+ LK AL  
Sbjct  647   MWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKT  706

Query  715   YS-ARDQEATGVDEAQAVAVLLEKYEVVRDMY------HGFDYVTALNGTPQQRLAMMAG  767
             Y+ ++++  T +D  +A AVLLEK +V+++M+       GFDY +A++  PQ+   ++ +
Sbjct  707   YTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLD  762

Query  768   AIEWILDRQQQWTAAETTEEGKKNAQRRYQDSVlalskayslasasDEARGIREEVGFFQ  827
             A + IL+           ++GKK    RY D VLAL+KA SL S+ DEA+ ++ E++F+ 
Sbjct  763   AANYILG----------LDDGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  828   AIRAALVK-SSTGSGVTSQERDFAIQQIVSRAVVSTEIVDILKAAGIQSPDISILSDEFL  886
             A++ A++K ++T+   +  E++  + +I+  A+V+T + D++  AG++ P+I++LSDEFL
Sbjct  809   AVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFL  868

Query  887   AEVQQMQKKNLALEALRKLINDGIRSRSKANIVETRTFSERLEQAVARYHANAITTAEVL  946
              EV++M ++NLA+E L KL+NDGI++R++ N+V+ + +S+RL   + RY+  AI TA+V+
Sbjct  869   EEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVI  928

Query  947   QQLIQLAKDIRAARQRGEESGLSDEEIAFYDALAENESAVQIIGDDNLKVIAHELLVSLK  1006
             ++LIQ+AK+++AA  R++  GL+ +EIAFYDALAENESAV+ +GD+ LK +A E+   L+
Sbjct  929   EELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLR  988

Query  1007  SNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAGWA  1060
              + +VDW  R+S RAR+R+LV++ L KY YPPD    AV+ +L+QAE +S +W+
Sbjct  989   KSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

109) J450_02390 in NC_021738


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  794 bits (3006),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1064 (48%), Positives = 756/1064 (72%), Gaps = 49/1064 (4%)

Query  4     INENTIEQSAIATLQGLGWDYTYGKTILAGLEHEWRERATEVVLKPLLAEAIAKFNPNLP  63
             ++E+ +EQ +++ + G GW+   G  I ++  +  R    +V L+P++   +  +NP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ACEVENVVAQVCRAESSDLAERNRQAYDWLRNGVKITYQLDGEQVSDVVQLIDFQRPENN  123
             A   +++++++ R+ES+D+   N+   + L +GV + Y+ D+  + D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DFRIVNQLDIGGKKGKRIPDLIGFVNGLSLVVFELKNPLKENADIGKAFAQLQTYKDEIS  183
              F +VNQ+ I+G K  R PD+I ++NGL++ V+ELK+P   NADI  AF QLQTYK+EIS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   DLFVFNQALVISDSIVARIGSLTADFDRFTPWRVVDEKNQNKRIVFEDELTALLQGVMNP  243
             DLF+ N+ALVISD+  ARIGSLTAD +RF PW+ +   N++ + ++E++L  +++G  N 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTIS--NEDDKPLLEHQLENVVNGFFNR  239

Query  244   KNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLATTG------------N  291
               LLDY++ F++FE DGK RLIKKI+AYHQF +V EAV+ T++A+TG            +
Sbjct  240   ELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RKIGVFWHTQGSGKSLSMLFYAGKVLSQGCLKNPTLVLVTERNDLDGQLYATFCGGEALL  351
             +K GV WHTQGSGKS+SM  YAGK+L Q+ ++NPT+V+VT+RNDLDGQLY+TFC +  LL
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   KQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHR  411
             KQ P QA  RD+LR  LA+R +GG+IFTT+QKF+ ++GE AHP LN R+NI+VI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDF  471
             SQYG+S  ++  G Y+ GYAKH+R ALPNASF+GFTGTP+  +DKDT+ VFG YVSIYD+
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  472   EDAVEDGATVPIIYEPRQISLG-ESGEFTKVMEEAQQLIDDDENSYNFRLR------EKL  524
             +DAV+DGATVPI YE+R   L+ +  E+  +  + ++L++D+E   + + +      EKL
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  525   HSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQ  584
              + ++R++++A D++ H+  R    +GKAM+V MSR ICV+LY+ + ALRPEWHS+DV +
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  585   GSIKIVMTSNASDPAEWQKH---NQDKKTLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCN  641
             G IKI+MT++ASD  + Q H   +Q KK LE RFKD +DPL+IVIVRDMWLTGFDAPCC+
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  642   TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEK  701
             TMYIDKPM GHNLMQAIARVNRVF++K+   GGL+VDY+G+++EL +A+K YT++ GK +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  702   PVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILAL  761
                D    +  ++E + VI+G FA    + + D +    + + P+  + +L +AN IL+L
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS---AFENNPQ--HVLLDAANYILGL  770

Query  762   DRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKN  821
             D               K+ +++ V   +K+ +LC++L    P ++ELAF  AV+ +IIK 
Sbjct  771   D-------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  822   STAPRN-SSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSP  880
             +T+ ++ S SE++ L  L+ +++ A+ + GV D+F L   D+PNI LLSDEFLE V++ P
Sbjct  818   TTTDKKFSQSEKNSL--LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMP  875

Query  881   TKDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileeliala  940
              ++L +  +E+ L   ++ ++  N+   K + ++L+  + +Y+N+ +   +++EELI +A
Sbjct  876   QRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMA  935

Query  941   kefeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDW  1000
             KEF+A   R++ALGL+P E+AFYDALA NESAVRE+GDE L KLA ++T +LRKS TVDW
Sbjct  936   KEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDW  995

Query  1001  QYKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAG  1044
             Q ++SVRA++R L+R +L  YKYPPD   +A+E++L+QAE ++ 
Sbjct  996   QVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

110) Metho_1322 in NC_019977


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  794 bits (3005),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1081 (45%), Positives = 752/1081 (70%), Gaps = 54/1081 (4%)

Query  6     ITESGIEKFAIELLEHQGYRYVYAPDIAPDSDTPERDRFEDVLLLERLRTAVGRINPNVP  65
             ++E ++E++++  +  QG   + +PDIAPD+  P R  F+DV+L   +R  +  +NP++P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  66    ADAREDAIRQVRRLNSPELISNNETFHRMLTEGINVSYQKDGNDRGDLVWLIDFNDTENN  125
             A   ++ I ++ R +SP+++ +N +FH++L  G+ V Y++D++   D   L+DFN+ ENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  126   EFLVANQFTVIENDVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQTIP  185
              F V NQ ++      +RPD+I ++NGLP+ VIELK+P+D NA +++AF QLQTYK+ I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  186   SLFAYNGFMVISDGLEARSGSLSAGFTRFMTWKSSDGRVEASPLIGQLETLIKGMLEKTT  245
              LF  N  +VISDG +AR GSL+A+  RF+ WK+     + + L  QLE +++G +++  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  246   LLDILRHFIVFEKSKKEDSTTGIITIRTVKKLASYHQYYAVNRAVESTLRASGYVAKEKW  305
             LLD +R FI+FE   K          R +KK+A+YHQ+ AV  AV++T+ AS        
Sbjct  242   LLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATIVAS--------  283

Query  306   DWNTLGIQHESPESYGLPGVKKQPVGDRKGGVIWHTQGSGKSLSMVFYAGKIV--LAMDN  363
                           + LP   +   G +K+GV+WHTQGSGKS+SM  YAGK++    M+N
Sbjct  284   -----------TGKF-LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNN  331

Query  364   PTIVVITDRNDLDDQLFDTFAASKQLLRQEPVQAENRNHLKELLNV-VSGGIVFTTIQKF  422
             PTIVV+TDRNDLD+QL+ TF  +K+LL+QEP QA NR++L+E+L    SGGI+FTT+QKF
Sbjct  332   PTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKF  391

Query  423   QPEEGN-VYPQLSDRENIIVIADEAHRTQYGFRAKHVDVKDEQGNVIGKKIVYGFAKYTR  481
              P +G+   P L+ R+NI+VI+DEAHR+QYG+ A      D +G        YG+AK  R
Sbjct  392   APLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMR  442

Query  482   DALPNATFLGFTGTPIEKTDVNTPAVFGNYVDIYDISQSIEDGATVKIYYESRLAKVALS  541
             DALPNA+F+GFTGTP+   D +T AVFG+YV IYDI ++++DGATV IYYESRLAK+ L+
Sbjct  443   DALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLN  502

Query  542   SEGkklvaeldee-ldkedlaeTQKIKAKWTQLEALIGSEARIKQIAQDIVTHFGQRQEV  600
              E    ++   ++ ++ E+  + +K K+ W++LE L+GSE+RIKQ+A D+V HF+ R+  
Sbjct  503   HEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  601   FEGKGMIVTMSRRIAADLYEEMIRVKPQWHSDDLRKGAIKVVMTSASSDGPRISKHHTTK  660
              +GK+MIV+MSR I   LY+ ++ ++P+WHS+D+ KG IK++MT+++SD  ++  H   K
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  661   DQRRVLAERMKDPEDELQLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVY  720
             + ++ L  R KD +D L++VIVRDMWLTGFD PC HTMYIDKPM+GH LMQAIARVNRV+
Sbjct  623   QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF  682

Query  721   KDKPGSLIVDYLGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMF----  776
             KDKPG+L+VDY+GIA++LK+AL  Y+DS GKG+ ++    A  ++LEKL+++  MF    
Sbjct  683   KDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTT  742

Query  777   --HGFAFEDYFEADTSRKLSIILEAEEHILGLENGKKRYIDEVTALSKTFSLAIPHEQAM  834
                GF +   FE +  +   ++L+A + ILGL++GKKRY+D V AL+K+ SL    ++A 
Sbjct  743   TDPGFDYSA-FENNPQH---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAK  798

Query  835   DVKDEISFYQAVKARLVKFDSTGIGKTDEEIETAIRQVIDKALVTERVIDVFDAAGIKKP  894
              ++ E++F  AVK  ++K+ +T+   ++ E ++ + +++D+A+V+  V DVF  AG+ KP
Sbjct  799   PLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKP  858

Query  895   DISILSEDFLAEVRNMEHKNLAMEVLKKLLNDEIRARTKKNLVQSRSLMEMLENSIVRYH  954
             +I++LS++FL EVR+M ++NLA+E+L KLLND I+ART++N+VQ +   + L   ++RY+
Sbjct  859   NIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYN  918

Query  955   NKVLTAAEVIEELIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEQLRE  1014
             N+ + +A+VIEELI+++KE++      + +GL+  E AFY A+A+NESA   +  E L+ 
Sbjct  919   NRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKK  978

Query  1015  LAVVLFEKVKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLRQAELIA  1074
             LA+ +  ++++++++DW ++ESVRA+L+++V++TL +Y YPPD    A E +L+QAE+++
Sbjct  979   LAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVS  1038

Query  1075  D  1075
             +
Sbjct  1039  N  1039

111) CJA_3632 in NC_010995


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  794 bits (3004),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/1077 (44%), Positives = 749/1077 (70%), Gaps = 46/1077 (4%)

Query  4     LNESAIEAFAITLLEQQGYTAIHGLDIAPDGDTPERSDYAQVLLTERLDKAIRRINPRLS  63
             L+E  +E +++  +  QG   +HG DIAPDG  P R  + +V+L   + K +  +NP+L+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    EDVLLQARKDVERVQSQDLLANNEAFHRLLTEGVPVSIQQDGNERGERVWLIDFDRPENN  123
               ++ +    + R +S D++ +N AFH+LL  GVPV  ++D++   +   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   EFAVISQFTVIENHQNKRPDLVLFVNGVPLVVIELKNAGDENASVKSAFKQIETYKALIP  183
              F+V++Q ++    Q +RPD++ ++NG+P+ VIELK+++D NA + +AF+Q++TYK  I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   SLFNSNAFIVISDGLEAKAGSISSGLSRFMHWKTADGKAEASKLVSQLETLIVGMLHPKT  243
              LF  N  +VISDG +A+ GS++++  RF+ WKT     + + L  QLE ++ G ++   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  244   LLDLIRHFIVFEKSSKEDPVSGLITINTVKKLAAYHQYYAVNAAVASTLRAADMDGHSMI  303
             LLD IR FI+FE  +K            +KK+AAYHQ+ AV  AV +T           I
Sbjct  242   LLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNAT-----------I  280

Query  304   HESPASYGLPGVSHQPKGDRKAGVVWHTQGSGKSLSMVFYTGKIV--LALNNPTVLVITD  361
               S + + LP  S+   G +KAGVVWHTQGSGKS+SM  Y+GK++    +NNPT++V+TD
Sbjct  281   VASTGKF-LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTD  339

Query  362   RNDLDDQLFDTFASSKQLLRQEPVQAQDRNHLKELLRV-ASGGVVFSTIQKFQPEDGN-V  419
             RNDLD+QL+ TF  +K+LL+QEP QA +R++L+E+L    SGG++F+T+QKF P DG+  
Sbjct  340   RNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQA  399

Query  420   YEQLSTRNNIVVIADEAHRTQYGFSAKTVDEKNSSGEVIGKKVVYGFAKYLRDALPNATY  479
                L+ R+NIVVI+DEAHR+QYG+SA    +K+++         YG+AK +RDALPNA++
Sbjct  400   HPALNLRDNIVVISDEAHRSQYGLSATL--DKDGA-------YKYGYAKHMRDALPNASF  450

Query  480   LGFTGTPIEKADANTPAVFGNYVDIYDIAQAVEDGATVRIFYESRLAKVQLSEEG-KKLI  538
             +GFTGTP+   D +T AVFG+YV IYDI +AV+DGATV I+YESRLAK++L++E    L 
Sbjct  451   MGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALS  510

Query  539   AELDEELGEMELNETQKAKAKWTKMEALIGSEKRIRNIAKDIVTHFEARQKVFDGKGMVV  598
             +++D+ + + E ++ +K+K+ W+++E L+GSE RI+++A D+V HF AR+   +GK+M+V
Sbjct  511   SQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIV  570

Query  599   SMSRRIAAELYAEIIKLRPEWYSDDLTKGVIKVVMTAASSDGPLLAKHHTTKEQRKLLAE  658
             +MSR I   LY  ++ LRPEW S+D+ KG IK++MT+++SD   L  H   K+ +K L  
Sbjct  571   AMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEA  630

Query  659   RMKDDDDPLKLVIVRDMWLTGFDAPGMHTLYIDKPMKGHNLMQAIARVNRVHKDKPGGLV  718
             R KD +DPLK+VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV KDKPGGLV
Sbjct  631   RFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLV  690

Query  719   VDYLGIAADLKEALSFYSEAGGKGDPTLAQEQAVTLMLEKLEVVSALFD------GFAYE  772
             VDY+GIA +LK+AL  Y+++ GKG+ T+   +A +++LEKL+V+ ++F       GF Y 
Sbjct  691   VDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS  750

Query  773   SYFAADTSQKLSMILAAEEHILSLDDGKKRYIKEVTELSLAYAIAIPHEQAIDVTDEVGF  832
             + F  +  +   ++L A + IL+LDDGKKRY+  V  L+ A ++    ++A  +  E++F
Sbjct  751   A-FENNPQH---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAF  806

Query  833   FQAVKARLVKFDSTEDGSGNEDVETTIRQVIDKALVSDKVIDVFDAAGIKKPDISILSEE  892
             + AVK  ++K+ +T+   ++ + ++ + +++D+A+V+  V DVF  AG+ KP+I++LS+E
Sbjct  807   LSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDE  866

Query  893   FLAELKDYQHKNIALEVLKKILNDELKIRLKKNLVESKKLIEMLEEAIKKYHNKILTAAE  952
             FL E+++  ++N+A+E+L K+LND +  R ++N+V+ KK  + L   + +Y+N+ + +A+
Sbjct  867   FLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQ  926

Query  953   VMDALISISKEITASDETAKQMGLSDFEYAFYTAVADNDSAKELMQQDTLRELAVVLTQR  1012
             V++ LI ++KE+ A+      +GL+  E AFY A+A+N+SA   + ++TL+ LA+ +T +
Sbjct  927   VIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQ  986

Query  1013  VRENASIDWTIKESVKAKLKVIVKRTLRQFGYPPDMQLLATETVLRQAEIIANELST  1069
             +R ++++DW ++ESV+A+L+++V++TL ++ YPPD  L A E +L+QAE+++N  ++
Sbjct  987   LRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

112) hsdR in NC_008384


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  792 bits (2999),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1029 (49%), Positives = 745/1029 (73%), Gaps = 35/1029 (3%)

Query  42    ISPDGSAPARLAYGDVLLSDMLAAAVERLNPDIPADACEQAIRQLSITETPSLVEENRRI  101
             I+PDG  P R+++ DV+L  ++   +E LNP++PA   ++ I +++  E+P +V  N+ +
Sbjct  28    IAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSNKAF  87

Query  102   HRLITEGVDVEFGIGDGEVKGDKVWLIDFEHPEKNEFLVTNQFTLAEGKHTRRPDVMVFV  161
             H+L+  GV VE+  +D  + +  + L+DF+HPE+N F V NQ +++  K+ RRPDV+ ++
Sbjct  88    HHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYI  146

Query  162   NGLPLGIIELKNAASKTATIDQAYQQLQTYKEQIPSLFRTNAVLVASDGMLARIGSLTAD  221
             NGLP+++IELK+++   A I  A++QLQTYK++I+ LF  N  LV SDG  ARIGSLTAD
Sbjct  147   NGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTAD  206

Query  222   EERFMPWRSVTGADGDFTPHGPYEMDTLLRGVFNKERFLALIRDFTVFGDRGEGPFKIIA  281
             EERF+PW++++  D+   P    +++ ++ G FN+E +L  IR F +F   G   +K IA
Sbjct  207   EERFLPWKTISNEDD--KPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIA  264

Query  282   GYHQFHGARKAITSAI-----------EAVKPEGDRKIGVIWHTQGSGKSLLMAFLGGLI  330
             +YHQFH+ R A+ ++I             +KP G +K GV+WHTQGSGKS+ M   +G +
Sbjct  265   AYHQFHAVREAVNATIVASTGKFLPLRSNIKP-GSKKAGVVWHTQGSGKSISMCCYAGKL  323

Query  331   VRSRELENPTLIVLTDRNDLDDQLFGTFSLCKDLIRQTPEQADSRDDLRKLLN-RASGGV  389
             ++  E++NPT++V+TDRNDLD+QL+ TF   KDL++Q P+QA +RD+LR +L  R SGG+
Sbjct  324   LQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGI  383

Query  390   IFTTVQKFTPEKGEEVFPVLTERRNVIVMADEAHRSQYGFDAKLNRETGERRYGYAHHIR  449
             IFTTVQKF+P  GE+  P L  R N++V++DEAHRSQYG+ A L+++ G  +YGYA H+R
Sbjct  384   IFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLDKD-GAYKYGYAKHMR  442

Query  450   QALPNASFMGFTGTPIEATDVNTPAIFGEYIDIYDISRAVEDGATVPIYYESRLARIELN  509
             +ALPNASFMGFTGTP+ + D +T A+FG+Y+ IYDI  AV+DGATVPIYYESRLA+++LN
Sbjct  443   DALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLN  502

Query  510   EDEKPKIDAAIEAMLEDEALTEQEKQKAQWTTVERLVGAEKRLKQIAADLVAHLQRRIEG  569
             ++E   + + ++ ++EDE   ++EK K++W+ +E+LVG+E R+KQ+AADLV H+  R   
Sbjct  503   HEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  570   LPGKAMVVCMSRRICVDLYEEIVALRPEWHSDDDDKGAIKIVMTGSASDPLDWQPHIGNk  629
             + GKAM+V MSR ICV LY+ +VALRPEWHS+D +KG IKI+MTGSASD  + QPHI NK
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  630   rrrddlakrarkVEDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMRGHGLMQAIARVNRVF  689
             + +  L  R + ++DPLK+VIVRDMWLTGFDAPC HTMY+DKPMRGH LMQAIARVNRVF
Sbjct  623   QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF  682

Query  690   KEKPGGLVVDYIGIATNLKKALAQYSQS-DRDKTGIDEEQAVALLLEKYEIVRGMFAGHD  748
             K+KPGGLVVDYIGIA +LK+AL  Y++S ++++T ID  +A A+LLEK ++++GMFA   
Sbjct  683   KDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTT  742

Query  749   YSLGISGKPFER--LRALADGIDWILKWQQAEAAKVDSQEAKKRAHRRYQDAVlelskay  806
                G+   +FE    + L D+ + IL          + +++KK    RY D VL L+KA 
Sbjct  743   TDPGFDYSAFENNPQHVLLDAANYIL----------GLDDGKK----RYFDVVLALNKAW  788

Query  807   alasasddaaeIRDEVGFFQAVRAALVKTTATG-KISDRAKSLAVEQLLNQAVANAEIVD  865
             +L S+ D+A  ++ E++F+ AV+ A++K T+T+ K+S+  K+  + ++L++A+  + + D
Sbjct  789   SLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDD  848

Query  866   ILKAAGLDSPDISVLSDQFLADIQKMekknlalealkkllnGEIKSRSKSNVVEAKTFSR  925
             ++  AGLD P+I++LSD+FL +++ M ++NLA+E L KLLN+ I +R+++NVV+ K +S 
Sbjct  849   VFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSD  908

Query  926   RLEEAVARYHANAISTVEMIQELIALAKEMQAASARGEEMGLTPEEIAFYDALAGNDSAV  985
             RL   + RY+  AI T ++I+ELI +AKE QAA AR++ +GL P+EIAFYDALA N+SAV
Sbjct  909   RLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAV  968

Query  986   EAMGSEQLRVIAHELVEQMRGSVTVDWQHKASARAKMRILVKRILKRFGYPPDLEQEAVQ  1045
               +G E L+ +A E+  Q+R S TVDWQ + S RA++RILV++ L ++ YPPD   +AV+
Sbjct  969   RELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVE  1028

Query  1046  TVLAQAELL  1054
              +L QAE++
Sbjct  1029  LILKQAEVV  1037

113) Veis_3131 in NC_008786


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  792 bits (2998),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 519/1074 (49%), Positives = 759/1074 (71%), Gaps = 52/1074 (4%)

Query  4     LAEADIEQALLTQLRRLGYSIASDDVIGPDGNAPERES-HDV---VVLHKRLETAVLRLN  59
             L+E D+EQ  L  +   G  +  +  I+PDG+ P R S HDV    +++K+LET    LN
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLET----LN  57

Query  60    PALPPEARADAIRKLTQSEFPALLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVRLLDFD  119
             P LP+    + I ++T++E P ++  N+ +H LL  GV VEY  DD V+    + L+DF+
Sbjct  58    PHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFN  116

Query  120   TPENNDWLAVQQFVVINGQVNRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTY  179
              PENN    V+Q  +   +  RRPDV+ ++NGLP+AVIELK+P+   A++ +AFNQLQTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  180   KQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGSAIAPKGSPELATLIEGV  239
             K++I+ LF  N  LV SDG  AR+GSL+AD ERF+PW+T       P    +L  +++G 
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  240   FAPQRFLDLLRYFTVFGETGSGLTKIVAGYHQFHAVNRAVESTIRASSQWQGVREEPASY  299
             F  + +LD +RYF +F   G  L K +A+YHQFHAV  AV++TI AS+         + +
Sbjct  237   FNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAST---------GKF  287

Query  300   GLPSVAMQARGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMENPTLVVLTDRNDLDDQ  359
              LP  +    G ++AGV+WHTQGSGKS+ M  YAG+L+Q++ M+NPT+VV+TDRNDLD+Q
Sbjct  288   -LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQ  346

Query  360   LFSTFSMCRDLIRQKPVQAEGREHLQQLLA-RASGGVIFTTLQKF----GEVAEP-LTTR  413
             L++TF   +DL++Q P QA  R++L+++LA R SGG+IFTT+QKF    GE A+P L  R
Sbjct  347   LYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLR  406

Query  414   RNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEATDVNT  473
              N+VVI+DEAHRSQYG+ A +D K G   YG+AK +RDALPNASF+GFTGTP+ + D +T
Sbjct  407   DNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDT  465

Query  474   LAVFGNYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPKLNAEVEALTEDEAVTEQ  533
              AVFG+Y+ +YDI  AV+DGATVPIYYESRLA+++L+++E   L+++V+ L EDE   ++
Sbjct  466   RAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQK  525

Query  534   EKLKAKWATVEKLVGSDKRLALVAQDLVAHFEDRLTALDGKAMVVCMSRRIAVALYDEII  593
             EK K+ W+ +EKLVGS+ R+  VA DLV HF  R ++++GKAM+V MSR I V LY+ ++
Sbjct  526   EKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALV  585

Query  594   KLRPDWHSTDDAAGAVKIVMTGAASDPPAWQQHIGNkarrdllakrardakdPLKLVIVR  653
              LRP+WHS D   G +KI+MTG+ASD    Q HI NK  +  L  R +D +DPLK+VIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  654   DMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFLDKPAGLIVDYIGIAQSLKSALA  713
             DMWLTGFDAPC HTMY+DKPM+GH LMQAIARVNRVF DKP+GL+VDYIGIA+ LK AL 
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  714   QYSAG-DRANTGVDEAQAVAVMQEKYEVVRDMY------HGFDYATALNGTPQQRLAMMA  766
              Y+ + ++++T +D  +A AV+ EK +V+++M+       GFDY +A++  PQ+   ++ 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLL  761

Query  767   GAIEWILDKQQQWTAAETTDEGKKNAQRRYQDAVlalskayslasasDEARGIREEIGFF  826
             +A + IL+           D+GKK    RY D VLAL+KA SL S+ DEA+ ++ E++F+
Sbjct  762   DAANYILG----------LDDGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  827   QAIRAALVK-SATGSGVTSQERDFAIQQIVSRAVISTEIVDILKAAGIQSPDLSILSDEF  885
              A++ A++K ++T+   +  E++  + +I+  A+++T + D++  AG++ P++++LSDEF
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  886   LAEVQQMQKKNLALEALRKLINDGIRSRSKANIVQTRAFSERLEDAVARYHANAITTAEV  945
             L EV++M ++NLA+E L KL+NDGI++R++ N+VQ + +S+RL   + RY+  AI TA+V
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  946   LQELIQLAKDIRAARQRGEEAGLSDEEIAFYDALAENESAVQAMGDDKLKVIAHELLGSL  1005
             ++ELIQ+AK+++AA  R++  GL+ +EIAFYDALAENESAV+ +GD+ LK +A E+ + L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  1006  KGNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAGW  1059
             + + +VDW  R+S RAR+R+LV++ L KY YPPD    AV+ +L+QAE +S +W
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

114) hsdR in NC_000907


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  791 bits (2994),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/1076 (49%), Positives = 770/1076 (72%), Gaps = 55/1076 (5%)

Query  1     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  60
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYTQNGEQKIEMVRLVDFEHWGN  120
             P S  D ++   T+++  D+VV N++F  LL  GV VEY +++    +   L+DF+H  N
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDE  180
             NRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ++TYK+E
Sbjct  121   NRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  181   IAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLM  240
             I++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L++++NG+ 
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLENVVNGFF  237

Query  241   QPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEK----------  290
             + E LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++ K          
Sbjct  238   NRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  291   GDRRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKD  350
             G ++ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ TF  +KD
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  351   LIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEA  410
             L+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R+NI+VISDEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  411   HRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  469
             HRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VFG YVSIY
Sbjct  417   HRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIY  476

Query  470   DLQDAVEDGATVPIVYDDA-RQIRLNKKDHDALFAEIDALLEEEPSTS--------LRLR  520
             D+QDAV+DGATVPI Y+    ++ LN  + +AL +++D L+E+E +           RL 
Sbjct  477   DIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRL-  535

Query  521   EKLLGSQERLIELAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDN  580
             EKL+GS+ R+ ++AAD+V+HFA RN  +++KAM+V  SR+ICV LYN ++AL+PEWHS++
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  581   INEGAIKIVMTGSASDTPEMQKHIYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAP  640
             ++ G IKI+MTGSASD  ++Q HIY+KQ K+ LE RFKD NDPLK+VIVRDMWLTGFDAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  641   CCNTMYLDKPMKGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAKELRAATQQYTNSTG  700
             CC+TMY+DKPM+GHNLMQAIARVNRVF +K+   GGL+VDY+G+A+EL+ A + YT+S G
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKTYTDSKG  712

Query  701   KGQLAEDVQSVFFKMKEQLEFIRTLFATPIEGKTFDVQAALEKDNPNDLLMAIRFAANHI  760
             KGQ + D +  F  + E+L+ I+ +FA    +  FD  +A+E +NP+++L+    AAN I
Sbjct  713   KGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFE-NNPQHVLLD---AANYI  767

Query  761   LSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQEIAFY  820
             L+LD    DG                KK ++     ++K+  LC+TL E  P ++E+AF 
Sbjct  768   LGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL  807

Query  821   DAVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEF  878
              AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+LLS+EF
Sbjct  808   SAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEF  867

Query  879   LQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTVVEI  938
             L+ V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+ +   ++
Sbjct  868   LEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQV  927

Query  939   LDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAKEITETL  998
             ++EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA E+T  L
Sbjct  928   IEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQL  987

Query  999   RKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAEDLTG  1054
             RKS T+DWQ +E+VRAR+R+LVR++L KYKYPPDK  +AV  ++KQAE +++  T+
Sbjct  988   RKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

115) hsdR in NC_017451


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  790 bits (2991),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 525/1083 (49%), Positives = 778/1083 (72%), Gaps = 64/1083 (5%)

Query  1     MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  60
             ML+E+D+EQL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYQAPNSHGQNEQKI--EMVRLV  118
             P S  D ++   T+++  D+VV N++F  LL  GV VEY+        ++K+  +   L+
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-------RDDKVIHDTALLM  113

Query  119   DFEHWENNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQ  178
             DF+H ENNRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ
Sbjct  114   DFNHPENNRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQ  172

Query  179   FETYKDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVV-DEKNKSVRLYFDDEL  237
             ++TYK+EI++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + +E +K++   ++++L
Sbjct  173   LQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPL---LEHQL  229

Query  238   QSLLNGLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEK--  295
             ++++NG+++ E LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++ K  
Sbjct  230   ENVVNGFFNRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFL  288

Query  296   --------GDRRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLF  347
                     G ++ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+
Sbjct  289   PLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY  348

Query  348   QTFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSN  407
              TF  +KDL+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R N
Sbjct  349   TTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDN  408

Query  408   IIVISDEAHRSQYGFTQKLH-NGKFQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDV  466
             I+VISDEAHRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ V
Sbjct  409   IVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAV  468

Query  467   FGRYVSIYDLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGE-KNPKLRL  524
             FG YVSIYD+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+E  + K + 
Sbjct  469   FGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKT  528

Query  525   R------EKLLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALH  578
             +      EKL+GSE+R+ ++A D+V+HFA RN  +++KAM+V  SR+ICV LYN ++AL+
Sbjct  529   KGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALR  588

Query  579   PEWHSDNINEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMW  638
             PEWHS++++ G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMW
Sbjct  589   PEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMW  648

Query  639   LTGFDAPCCNTMYIDKPMQGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAEELRAATQ  698
             LTGFDAPCC+TMYIDKPM+GHNLMQAIARVNRVF +K+   GGL+VDY+G+A+EL+ A +
Sbjct  649   LTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALK  705

Query  699   QYTNSTGKGQLAEDVQSVFFKMKEQLEFIRTLFATPIEGKTFDVQIALEKDNPNDLLMAI  758
              YT+S GKGQ + D +  F  + E+L+ I+ +FA    +  FD   A+E +NP+++L+  
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYS-AFE-NNPQHVLLD-  762

Query  759   RFAANHILSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGTLAEVEPY  818
               AAN IL+LD    DG                KK ++     ++K+  LC+TL E  P 
Sbjct  763   --AANYILGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPL  800

Query  819   NQEIAFYDAVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQI  876
             ++E+AF  AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I
Sbjct  801   QKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNI  860

Query  877   SLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNH  936
             +LLS+EFL+ V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+
Sbjct  861   GLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNR  920

Query  937   NLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLA  996
              +   ++++EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA
Sbjct  921   AIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLA  980

Query  997   KEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAED  1056
              E+T  LRKS T+DWQ +E+VRAR+R+LVR++L KYKYPPDK  +AV  ++KQAE +++ 
Sbjct  981   IEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

Query  1057  LTG  1059
              T+
Sbjct  1041  WTA  1043

116) Galf_1221 in NC_014394


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  789 bits (2986),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/1056 (49%), Positives = 752/1056 (72%), Gaps = 44/1056 (4%)

Query  20    GLGYSIEQEENIGPDGHRPERDSHDVVVLKKRLEDAVALLNPGMPLDARQDAIRKVMQSE  79
             G G  + +  +I+PDG  P R S + V L+  +   +  LNP +P    ++ I ++ ++E
Sbjct  17    GQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPE  76

Query  80    LPLMLEENRRIHKLMTEGVDVEYYADDGTLTAGKVSLINFERPEQNDWLVVSQFVVIAGQ  139
              P ++  N+ +H L+  GV VEY  DD  +    + L++F++PE+N   VV+Q  + + +
Sbjct  77    SPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPENNRFTVVNQVAISGTK  135

Query  140   YNRRPDVVVFVNGLPLGVIELKAPGSGNATLVGAFNQLQTYKKQIPALFNTNALLVTSDG  199
               RRPDV+ ++NGLP++VIELK+P+  NA + +AFNQLQTYK++I+ LF  N  LV SDG
Sbjct  136   QLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDG  195

Query  200   ITARVGSLSADLERFMPWRTTDGKDVAPKGAPELSTLIEGVFEQRRLLDMLCHFTVFGET  259
               AR+GSL+AD ERF+PW+T    D  P    +L  +++G F++  LLD +  F +F   
Sbjct  196   YNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESD  255

Query  260   GSGLAKIIAGYHQFHAVIRAVDSTLRASSQWQGVQEDPRDYGLPSVKTQAKGDRRAGVIW  319
             G  L K IA+YHQFHAV  AV++T+ AS+           + LP       G ++AGV+W
Sbjct  256   GKRLIKKIAAYHQFHAVREAVNATIVASTG---------KF-LPLRSNIKPGSKKAGVVW  305

Query  320   HTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFATFSMCRDLIRQTPVQA  379
             HTQGSGKS+ M  YAG+L++++ M NPT+VV+TDRNDLD+QL++TF   +DL++Q P QA
Sbjct  306   HTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQA  365

Query  380   DSREDLTKLLA-RASGGVIFTTLQKFG-----ETSQALTDRRNVVVIADEAHRSQYGFRA  433
              +R++L  +LA R SGG+IFTT+QKF+     ++  AL  R N+VVI+DEAHRSQYG+ A
Sbjct  366   SNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSA  425

Query  434   KVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDISRAVED  493
              +D K G   YG+AK +RDALPNASF+GFTGTP+ ++D +T AVFG+Y+ +YDI  AV+D
Sbjct  426   TLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDD  484

Query  494   GATVPIYYESRLARIELDEDEKPKIDAEVNELTEDDPEVEQERFKRKWSTVEALVGSDKR  553
             GATVPIYYESRLA+++L+++E   + ++V++L ED+   ++E+ K  WS +E LVGS+ R
Sbjct  485   GATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPR  544

Query  554   LALVAQDMVTHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNAGAVKIV  613
             +  VA D+V HF  R A+++GKAM+V MSR ICV+LY+ +V LRP+WHS D + G +KI+
Sbjct  545   IKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKII  604

Query  614   MTGAASDPEDWQQHIGNkarrdllakrardakdPLKLVIVRDMWLTGFDAPCMHTMYVDK  673
             MTG+ASD E+ Q HI NK  +  L  R +D +DPLK+VIVRDMWLTGFDAPC HTMY+DK
Sbjct  605   MTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDK  664

Query  674   PMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYS-KNDQENTGVDESQAI  732
             PM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK AL+ Y+  +++ +T +D  +A+
Sbjct  665   PMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAF  724

Query  733   AVLMEKYEVVRDMY------HGFDYASAMGGTPQERLAMMAGAIEWILDMQQKLAAKEKT  786
             AVL+EK +V+++M+       GFDY SA    PQ+   ++ +A + IL+++         
Sbjct  725   AVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYILGLD---------  771

Query  787   KDGKKDAHRRYQDAVlalskafslasasDEAREIREEVGFFQAIRAALVK-SSTGSGVTQ  845
              DGKK    RY D VLAL+KA SL S+ DEA+ ++ E++F+ A++ A++K ++T+   +Q
Sbjct  772   -DGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQ  826

Query  846   QERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMERKNLALEALRK  905
              E++  + +I+  A+V+T + D++A AG+  P+I++LSDEFL EV++M ++NLA+E L K
Sbjct  827   SEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEK  886

Query  906   LINDGIRSRSKSNVVQTKAFSERLEDAVARYHANAITTAEVLQELIDLAKDIRAARQRGE  965
             L+NDGI++R+++NVVQ K +S+RL   + RY+  AI TA+V++ELI++AK+++AA  R++
Sbjct  887   LLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDD  946

Query  966   EQGLSEDEIAFYDALAENESAIQMMGDDKLKLIAHELLVSLRENVSVDWAHRDSARARMR  1025
               GL+ DEIAFYDALAENESA++ +GD+ LK +A E+   LR + +VDW  R+S RAR+R
Sbjct  947   ALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLR  1006

Query  1026  VLVKRILRKYGYPPDLQDAAVQTVLQQAEALSSTWS  1061
             +LV++ L KY YPPD    AV+ +L+QAE +S++W+
Sbjct  1007  ILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

117) MM_2204 in NC_003901


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  789 bits (2985),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1065 (45%), Positives = 740/1065 (70%), Gaps = 54/1065 (5%)

Query  22    QGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIRQVRRLNS  81
             QG + + +PDIAPD+  P R  F+DV+L   +RK +  +NP++PA   ++ I ++ R +S
Sbjct  18    QGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPES  77

Query  82    PELISNNEAFHKMLTEGINVSYRKDGADRGDLVWLVDFKDPENNDFLVANQFTVVENDKN  141
             P+++ +N AFH +L  G+ V Y++D+    D   L+DF++PENN F V NQ ++    + 
Sbjct  78    PDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  142   KRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGFMVISDGLE  201
             +RPD+I ++NGLP+ VIELK+P+D NA +++AF Q+QTYK+ I+ LF  N  +VISDG +
Sbjct  138   RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  202   ARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHFIVFEKSKK  261
             AR GSL+A+  RF++WK+    ++ + L  QLE +++G +++  LLD +R FI+FE   K
Sbjct  198   ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  262   EDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIHYESPENYG  321
                       + +KK+A+YHQ+ AV  AV++T+ AS                     ++ 
Sbjct  258   ----------RLIKKIAAYHQFHAVREAVNATIVAS-------------------TGKF-  287

Query  322   LPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIV--LAMDNPTLVVITDRNDLDDQL  379
             LP   +   G +K+GV+WHTQGSGKS++M  Y+GK++    M+NPT+VV+TDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  380   FDTFAASKQLLRQEPVQAENRDHLKQLLNV-ASGGIVFTTIQKFQPEEGN-VYPKLSDRK  437
             + TF  +K+LL+QEP QA NRD+L+++L    SGGI+FTT+QKF P +G+   P L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  438   NIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDALPNATFLGFTGTPI  497
             NI+VI+DEAHR+QYG+ A      D +G        YG+AK  RDALPNA+F+GFTGTP+
Sbjct  408   NIVVISDEAHRSQYGLSA----TLDKDGA-----YKYGYAKHMRDALPNASFMGFTGTPV  458

Query  498   EKTDVNTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkklvaeldee-ld  556
                D +T  VFG+YV IYDI ++V+DGATV IYYESRLAK+ L++E    ++   ++ ++
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  557   kedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMIVAMSRRIAA  616
              E+  + +K K+ W++LE L+GSE+RIKQ+A D+V HF  R+   +GK+MIVAMSR I  
Sbjct  519   DEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICV  578

Query  617   DLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSDGPKISKHHTTKDQRRILAERMKNPEDE  676
              LY+ ++ ++PEWHS+D+ KG IK++MT+++SD   +  H   K+ ++ L  R K+ +D 
Sbjct  579   RLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDP  638

Query  677   LKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSLIVDYLGIAS  736
             LK+VIVRDMWLTGFD PC HTMYIDKPM+GH LMQAIARVNRV+KDKPG+L+VDY+GIA+
Sbjct  639   LKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIAN  698

Query  737   DLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMF------HGFTFDDYFEADTS  790
             +LK+AL  Y+DS GKG+ ++    A  ++LEKL+++  MF       GF +   FE +  
Sbjct  699   ELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQ  757

Query  791   RKLSIILEAEEHILGLENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAVKARL  850
             +   ++L+A + ILGL++GKKRY+D V AL+KA SL    ++A  ++ E++F  AVK  +
Sbjct  758   H---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAI  814

Query  851   VKFDGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSEDFLLEVRNM  910
             +K+  T+   ++ + ++ + +++D+A+V+  V DVF  AG+ KP+I++LS++FL EVR+M
Sbjct  815   IKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREM  874

Query  911   EHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAEVIEELIKL  970
              ++NLA+E+L KLLND I+AR ++N++Q +   + L   + RY+N+ + +A+VIEELI++
Sbjct  875   PQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQM  934

Query  971   SKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEKVKQNASID  1030
             +KE++      + +GL+  E AFY A+A+NESA   +  E L+ LA+ +  ++++++++D
Sbjct  935   AKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVD  994

Query  1031  WTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIAD  1075
             W ++ESVRA+L+++V++TL +Y YPPD    A E +LKQAE++++
Sbjct  995   WQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

118) Mbur_1213 in NC_007955


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  786 bits (2973),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1080 (46%), Positives = 748/1080 (70%), Gaps = 54/1080 (5%)

Query  1     MTESAIEEFAIELLEHQGYQYIYAPDITPDSDTPERERFEDVLLSERLRKSIGRINPTIP  60
             ++E  +E++++  +  QG + + +PDI+PD+  P R  F+DV+L   +RK +  +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61    ADAREDAIRQIQRLNSPELIANNEAFHRMLTEGIKVSYQKDGADRGDLVWLVDFNDPENN  120
             A   ++ I +I R +SP+++ +N AFH++L  G+ V Y++D+    D   L+DFN+PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121   EFLVTNQFTVIENNVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQAIS  180
              F V NQ ++   +  +RPD+I ++NGLP+ VIELK+P+D NA +++AF QLQTYK+ IS
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181   SLFAYNGFMVISDGLEAKSGSLSAGFSRFMAWKSSDGTVEASPLIGQLETLINGMLNKTT  240
              LF  N  +VISDG +A+ GSL+A+  RF++WK+     + + L  QLE ++NG +N+  
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  241   LLDLVRHFIVFEKSKKEDRTTGIITIQTVKKLATYHQYYAVNRAVESTLRASGYAAAKDW  300
             LLD +R FI+FE   K          + +KK+A+YHQ+ AV  AV++T+ AS        
Sbjct  242   LLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATIVAS--------  283

Query  301   QIFGLHHESPESYGLPGVTEQPIGDRKGGVVWHTQGSGKSLSMVFYTGKIV--LAMDNPT  358
                         + LP  ++   G +K+GVVWHTQGSGKS+SM  Y+GK++    M+NPT
Sbjct  284   ---------TGKF-LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPT  333

Query  359   VVVITDRNDLDDQLFDTFAASKQLLRQEPVQAENRGHLKELLNV-ASGGVVFTTIQKFQP  417
             +VV+TDRNDLD+QL+ TF  +K+LL+QEP QA NR++L+E+L    SGG++FTT+QKF P
Sbjct  334   IVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP  393

Query  418   EEGN-VYPKLSDRRNIIVIADEAHRTQYGFKAKTIDIKDEQGNVIGQKIVYGFAKYTRDA  476
              +G+   P L+ R NI+VI+DEAHR+QYG+ A      D +G        YG+AK  RDA
Sbjct  394   LDGEQAHPALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDA  444

Query  477   LPNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVKIYYESRLAKIILSKE  536
             LPNA+++GFTGTP+   D +T AVFG+YV IYDI +AV+DGATV IYYESRLAK+ L+ E
Sbjct  445   LPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHE  504

Query  537   G-KKLVSELDEELEKENLAETQKAKAKWTQLEALIGSEGRIRQIAQDIVTHFEQRKEVFE  595
                 L S++D+ +E E+  + +K+K+ W++LE L+GSE RI+Q+A D+V HF  R+   +
Sbjct  505   ELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMN  564

Query  596   GKGMIVAMSRRIAADLYDEIIKIKPQWHNDDFKKGEIKIVMTSASSDGPKISKHHTTKEQ  655
             GK+MIVAMSR I   LY+ ++ ++P+WH++D  KGEIKI+MT+++SD   +  H   K+ 
Sbjct  565   GKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQT  624

Query  656   RRALAERMKDPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKD  715
             ++ L  R KD +D LK+VIVRDMWLTGFD PC HTMYIDKPM+GH LMQAIARVNRV+KD
Sbjct  625   KKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKD  684

Query  716   KPGSLVVDYLGIASDLKEALSFYSDSGGKGDPAVLQESAVQLMLEKLEIVSQMF------  769
             KPG+LVVDY+GIA++LK+AL  Y+DS GKG+ ++    A  ++LEKL+++  MF      
Sbjct  685   KPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTD  744

Query  770   HGFSYEHYFAADTSTKLSIILAAEEHILGLENGKKRYIDEVTALSRAFSIAIPHEEAMDV  829
              GF Y  +     +    ++L A + ILGL++GKKRY+D V AL++A S+    +EA  +
Sbjct  745   PGFDYSAF----ENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPL  800

Query  830   KDEISFYQAIKARLVKFDSTGTGKTDEEIETAIRQVIDQALVTEQVIDVFDAAGIKKPDI  889
             + E++F  A+K  ++K+ +T+   ++ E ++ + +++D+A+V+  V DVF  AG+ KP+I
Sbjct  801   QKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNI  860

Query  890   SILSEDFLLEVQNMEHKNIALEVLKKLLNDEIKARVKKNLVQSKSLMEMLEDSIKKYHNK  949
             ++LS++FL EV++M ++N+A+E+L KLLND I AR ++N+VQ K   + L   + +Y+N+
Sbjct  861   GLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNR  920

Query  950   VITAAevieelielske-ikRMDKEPLEMGLSEFEYAFYTAIADNDSARELMQKEKLREL  1008
              I +A+VIEELI+++KE    M ++   +GL+  E AFY A+A+N+SA   +  E L+ L
Sbjct  921   AIETAQVIEELIQMAKEFQAAMARDD-ALGLNPDEIAFYDALAENESAVRELGDETLKKL  979

Query  1009  AVVLFDKIKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDLQALATETVLKQAELITD  1068
             A+ +  ++++++++DW ++ESVRA+L+++V++TL +Y YPPD    A E +LKQAE++++
Sbjct  980   AIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

119) Xfasm12_2283 in NC_010513


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  785 bits (2970),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1061 (48%), Positives = 757/1061 (72%), Gaps = 44/1061 (4%)

Query  4     LSEATLEQAVLDQLRLLGYSIEREENIGPDGYRPERASYDQVVLKQRFVDAVTRLNPGLP  63
             LSE  LEQ  L+ +   G  + +  +I+PDG  P R S+++V L+  F   +  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    PEARQDAIRKVTQSELPSLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFDHPQQ  123
             +   ++ I ++T++E P ++  N+ +H+L+  GV VEY  +D+ +  +   L+DF+HP++
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPEN  120

Query  124   NDWLAVNQFVVIADHYNRRPDVVLFLNGLPLAVIELKAPGSINATLIAAFNQLQTYKEQI  183
             N    VNQ  + +    RRPDV+ ++NGLP+AVIELK+P+ +NA + AAFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PALFNTNALLVTSDGMTARFGSLSADLERFMPWRTTDGTDIAPKGVPELATLIEGIFEPH  243
             + LF  N  LV SDG  AR+GSL+AD ERF+PW+T    D  P    +L  +++G+F+ +
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RLLDLLRHFTVFRKTDAGLAKIIAGYHQFHAVRQAINSTVAASSPQ----------GNQQ  293
              LLD +R F +F   +  L K IA+YHQFHAVR+A+N+T+ AS+ +          G+++
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   IGVIWHTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFTTFSQCGDLIRQ  353
              GV+WHTQGSGKS+ M  YAG+L++++ M NPT+VV+TDRNDLD+QL+TTF Q  DL++Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   TPVQAQSRDQVRKLLN-RASGGVIFTTLQKF----GDITEP-LTTRRNVVVIADEAHRSQ  407
              P QA +RDQ+R +L  R SGG+IFTT+QKF    G+ ++P L  R N+VVI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  408   YGFKAKVDNKTGKISYGFAKYMRDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDIS  467
             YG+ A +D K G   YG+AK MRDALPNAS +GFTGTP+ ++D +T AVFG+Y+ IYDI 
Sbjct  421   YGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  468   RAVEDGATVPIYYESRLARIALDEAEKPQIDAEVNALTEADSEAEQERFKKKWSTVETLV  527
              AV+DGATVPIYYESRLA++ L++ E   + ++V+ L E +   ++E+ K  WS +E LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  528   GSDKRLALIAKDIITHCEDRLAALDGKAMVVCMSRRICVALYDHIVTLRPDWHSTDNKAG  587
             GS+ R+  +A D++ H   R A+++GKAM+V MSR ICV LY+ +V+LRP+WHS D   G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  588   SLKIVMTGTASDPQQWRQHIGNKarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHT  647
              +KI+MTG+ASD ++ + HI NK  +  L  R +D +DPLK+VIVRDMWLTGFDAPC HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  648   MYLDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLRTALQQYS-KNDQQHTGVD  706
             MY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++L+ AL+ Y+  +++ +T +D
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  707   EAQAIAVMMEKYQIVRDMY------HGYDYLTAMSGTPQERLAMMGGAIEWILNlqqqla  760
               +A+AV++EK +++++M+       G+DY +A    PQ+   ++ +A + IL       
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYIL-------  768

Query  761   ataqtKEGKKEAHRRYQDavlalskafalasasDEARHIREEVGFFQAIRAALVK-SADH  819
                    G  ++ +RY D VLAL+KA +L S+ DEA+ ++ E++F+ A++ A++K ++ +
Sbjct  769   -------GLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  820   SGGSEPQRDLAIQQIVSRAVVSTEIVDILAASGINSPDISILSDAFLAEIQQMQRKHLAL  879
                S+++++  + +I+  A+V+T + D++A +G++ P+I++LSD FL E+++M +++LA+
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  880   EALRKLLNDRIRSRSTANLVQTKAFSERLEGAVARYHANAITTAQVLQELIQLAKDIRAA  939
             E L KLLND I++R+  N+VQ K +S+RL + + RY+  AI TAQV++ELIQ+AK+++AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  940   RQRGEATGLSDEEVAFYDALAENESAVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSA  999
               R++A GL+ +E+AFYDALAENESAV+ +GD+TL+ +A E+  +LR + +VDW  R+S 
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1000  RARMRVLVKRILRKYGYPPDLQNTAVQTVLQQAEAFSSQWS  1040
             RAR+R+LV++ L KY YPPD    AV+ +L+QAE  S+ W+
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

120) Neut_0537 in NC_008344


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  784 bits (2969),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1073 (47%), Positives = 753/1073 (71%), Gaps = 41/1073 (3%)

Query  4     LSEAAVEQALLDQLRALGYSIEQEEIIGPDGKQSEHESHDEVVLKKRFEDAVARLNPGLP  63
             LSE  +EQ  L+ + + G  + +   I+PDGK++ + S ++V L+  F   +  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    LEARQDAVHKVMQSELPSLLEENRRLHKLLTEGVDVEYYTNDGTLTAGKVALINFEHPEQ  123
                 ++ + ++ ++E P ++  N+ +H LL  GV VEY   D+ +  +   L++F+HPE+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPEN  120

Query  124   NDWLAVSQFVVINDQNNRRPDVVVFVNGLPLGVIELKAPGNAGAHLLGAFNQLQTYKQQI  183
             N    V+Q  +   ++ RRPDV+ ++NGLP++VIELK+P++  A++ +AFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PQLFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTRIEPKGMPEMATLIEGVFEQG  243
             ++LF  N  LV SDG  AR+GSL+AD ERF+PW+T       P    ++  +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RFLDLLRHFTVFGETGGGLIKIIAGYHQFHAVKKAVVSTLRASQPSDRLGVAEDPAVYGL  303
              +LD +R F +F   G  LIK IA+YHQFHAV+ AV +T           +    + + L
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNAT-----------IVASTGKF-L  288

Query  304   PSVKVQPPGDHKAGVIWHTQGSGKSLLMAFYAGLLVFDSRMANPTLVVLTDRNDLDDQLF  363
             P      PG  KAGV+WHTQGSGKS+ M  YAG L+ ++ M NPT+VV+TDRNDLD+QL+
Sbjct  289   PLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY  348

Query  364   ATFAMCKDLLRQTPVQAQDREHLRTLLN-RASGGVIFTTLQKFSPAADETDFPALTNRSN  422
             +TF   KDLL+Q P QA +R++LR +L  R SGG+IFTT+QKF+P  +E   PAL  R N
Sbjct  349   TTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDN  408

Query  423   IVVIADEAHRSQYGFRAKVASKTGEIAYGFAKYLRDALPHASFIGFTGTPIEAADVNTPA  482
             IVVI+DEAHRSQYG+ A +  K G   YG+AK +RDALP+ASF+GFTGTP+ + D +T A
Sbjct  409   IVVISDEAHRSQYGLSATL-DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  483   VFGHYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPHIDAEIEALLEDEVEASAER  542
             VFG+Y+ IYDI  AV+DGATVPIYYESRLA+++L+++E   + ++++ L+EDE     E+
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  543   TKQKWSTVEALVGSDKRLALVAADLVQHFEDRVAALSGRAMMVCMSRRICVALYDQIIKL  602
             TK  WS +E LVGS+ R+  VAADLV+HF  R A+++G+AM+V MSR ICV LY+ ++ L
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  603   CPDWHSNDDNAGSIKIVMTGTASDPVEWQQHIGNkarrdllakrardPQDPLRLVIVRDM  662
              P+WHS+D + G IKI+MTG+ASD  + Q HI NK  +  L  R +D +DPL++VIVRDM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  663   WLTGFDAPSIHTMYIDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALAQY  722
             WLTGFDAP  HTMYIDKPMRGH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  723   SKP-DQDKTGIDEREAVAVLLEKVEIVRDMFF------GFDYQTGLGGTPSERLAMMASA  775
             + + ++++T ID R+A AVLLEK++++++MF       GFDY +++   P +   ++  A
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDA  763

Query  776   IEWILDKQQQWAAAEKTPEASRQARRRFADGVLSLSKAFALVASSDEARGIREEVGFFQA  835
              + IL+ +              ++++R+ D VL+L+KA +L ++ DEA+ ++ E++F+ A
Sbjct  764   ANYILGLD--------------DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSA  809

Query  836   IRAALVKTAGGAGAIRQ-DRELAIQQIVSRAVVSTEIVDILAAAGIQTPDISILSDEFLL  894
             ++ A++K +     + Q +++  + +I+  A+V+T + D++A AG++ P+I++LSDEFL 
Sbjct  810   VKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLE  869

Query  895   EVQQMEKKNLGLEALRKLLNDSIRSRTRTNVVETRAFTERLEDAIARYHANAITTAEVLQ  954
             EV++M ++NL++E L KLLND+I++RT  NVV+ + +++RL   + RY+  AI TA+V++
Sbjct  870   EVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIE  929

Query  955   ELINLAQDIRAARNRGEEQGLSLDEIAFYDALAENESAVQVMGDDNLRVIAHELLVSLKE  1014
             ELI++A++++AA  R++  GL+ DEIAFYDALAENESAV+ +GD+ L+ +A E+   L+ 
Sbjct  930   ELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRK  989

Query  1015  NIAVDWAHRESararlrvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSSEWS  1067
             + +VDW  RES RARLR+LV++ L KY YPPD    AV+ +L+QAE +S+ W+
Sbjct  990   STTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

121) HIB_14360 in NC_016809


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  780 bits (2951),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/1082 (49%), Positives = 775/1082 (72%), Gaps = 62/1082 (5%)

Query  1     MLNENDIKQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  60
             ML+E+D+ QL+L ++ + GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PESAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKI--EMARLV  118
             P S  D ++   T+++  D+VV N+AF  LL  GV VEY+        ++K+  + A L+
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-------RDDKVIHDTALLM  113

Query  119   DFEHWGNNRFVAVNQLEIRSRKGGKRIPDITGFVNGLPLVVFELKNPLRESADLLQAFNQ  178
             DF+H  NNRF  VNQ+ I + K  +R PD+  ++NGLP+ V+ELK+P   +AD+  AFNQ
Sbjct  114   DFNHPENNRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQ  172

Query  179   FETYKDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQ  238
             ++TYK+EI++LF+ N+AL+ISDG  AR+GSL+AD +RF PWK + + +  + L  +++L+
Sbjct  173   LQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLE  230

Query  239   SllngllkpkdlldYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSE----  294
             +++NG+++   LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI A++     
Sbjct  231   NVVNGFFNRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLP  289

Query  295   ------QGDKRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQ  348
                    G K+ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ 
Sbjct  290   LRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYT  349

Query  349   TFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNI  408
             TF  +KDL+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R+NI
Sbjct  350   TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNI  409

Query  409   IVISDEAHRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVF  467
             +VISDEAHRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VF
Sbjct  410   VVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVF  469

Query  468   GRYVSIYDLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGE-KNPKLRLR  525
             G YVSIYD+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+E  + K + +
Sbjct  470   GDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTK  529

Query  526   ------EKLLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHP  579
                   EKL+GSE+R+ ++A D+V+HFA RN  +++KAM+V  SR+ICV LYN ++AL+P
Sbjct  530   GDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRP  589

Query  580   EWHSDNINEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWL  639
             EWHS++++ G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWL
Sbjct  590   EWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWL  649

Query  640   TGFDAPCCNTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQ  699
             TGFDAPCC+TMYIDKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+EL +A + 
Sbjct  650   TGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKT  706

Query  700   YTNSQGKGKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIR  759
             YT+S+GKG+ +    D F  + E L+VI+++FA    +  FD  +A+E +NP+++L+   
Sbjct  707   YTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFE-NNPQHVLLD--  762

Query  760   FAANHILSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKTAGLVKKGYMLCGALAEVEPYN  819
              AAN IL+LD    DG                KK ++     ++K+  LC++L E  P +
Sbjct  763   -AANYILGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQ  801

Query  820   QEIAFYDAVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQIS  877
             +E+AF  AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+
Sbjct  802   KELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIG  861

Query  878   LLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFEKRLKEALNQYHNHN  937
             LLS+EFL+ V++ P +NL V  +E+ L   I  ++  N+  +K +  RL+  L +Y+N+ 
Sbjct  862   LLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRA  921

Query  938   LTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAK  997
             +   ++++EL++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA 
Sbjct  922   IETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAI  981

Query  998   EITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAEDL  1057
             E+T  LRKS T+DWQ +E+VRAR+R+LVR++L KYKYPPDK  +AV  ++KQAE +++  
Sbjct  982   EVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

Query  1058  TG  1059
             T+
Sbjct  1042  TA  1043

122) HICON_18090 in NC_014922


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  780 bits (2952),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 518/1082 (48%), Positives = 774/1082 (72%), Gaps = 62/1082 (5%)

Query  7     MLNENDIEQLTLQRLQPLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQL  66
             ML+E+D+EQL+L ++   GWE   G D++ +  +  R  + +V +   +R  +  LNP+L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  67    PESAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKI--EMARLV  124
             P S  D ++   T+++  D+VV N+AF  LL  GV VEY+        ++K+  + A L+
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-------RDDKVIHDTALLM  113

Query  125   DFEHWGNNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQ  184
             DF+H  NNRF  VNQ+ I + K  +R PD+I ++NGLP+ V+ELK+P   +AD+  AFNQ
Sbjct  114   DFNHPENNRFTVVNQVAISGTKQLRR-PDVICYINGLPIAVIELKSPSDVNADIWAAFNQ  172

Query  185   FETYKDEIAELFVYNQALIISDGIVALLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQ  244
             ++TYK+EI++LF+ N+AL+ISDG  A +GSL+AD +RF PWK + + +  + L  +++L+
Sbjct  173   LQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLL--EHQLE  230

Query  245   SLLNGLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTI---------  295
             +++NG+++ E LLDYIRYF+LFE D+  + IKKIAAYHQ+ +V EAV++TI         
Sbjct  231   NVVNGFFNRELLLDYIRYFILFESDG-KRLIKKIAAYHQFHAVREAVNATIVASTGKFLP  289

Query  296   -WATSEQGDRRIGVMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQ  354
              ++    G ++ GV+WHTQGSGKSISM  YAGKLL Q+E++NPTIVVVTDRNDLDGQL+ 
Sbjct  290   LRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYT  349

Query  355   TFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERSNI  414
             TF  +KDL+KQ PQQ  +RDQLR++LA  E GG++FTT+QKFA  + E   P LN R NI
Sbjct  350   TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNI  409

Query  415   IVISDEAHRSQYGFTQKLH-NGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVF  473
             +VISDEAHRSQYG++  L+ +G ++ GYA+H+RDALPNASF+GFTGTP+S EDKDT+ VF
Sbjct  410   VVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVF  469

Query  474   GRYVSIYDLQDAVEDGATVPIVYEARQIKLA-ENANHDELFAEIDELLEGEE-NPKLRLR  531
             G YVSIYD+QDAV+DGATVPI YE+R  KL  ++ + + L +++D+L+E+EE + K + +
Sbjct  470   GDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTK  529

Query  532   ------EKLLGSEARLHDLAVDFVQHFAKRNEvvdsksmmvvssRQICVDLYNQIIALHP  585
                   EKL+GSE+R+ ++A D+V+HFA RN  +++K+M+V  SR+ICV LYN ++AL+P
Sbjct  530   GDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRP  589

Query  586   EWHSDNINEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWL  645
             EWHS++++ G IKI+MTGSASD  ++Q H+Y+KQ K+ LE RFKD NDPLK+VIVRDMWL
Sbjct  590   EWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWL  649

Query  646   TGFDAPCCNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQ  705
             TGFDAPCC+TMY+DKPM+GHNLMQAIARVNRVF++K+   GGL+VDY+GIA+ELK+A + 
Sbjct  650   TGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP---GGLVVDYIGIANELKQALKT  706

Query  706   YTNSQGKGKLADSVIDVFFKMKEHLEVIRSLFTTPVEGKTFDVQTVLEKDNPNELLMAIR  765
             YT+S+GKG+ +    D F  + E L+VI+++F+    +  FD  +    +NP+++L+   
Sbjct  707   YTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHVLLD--  762

Query  766   FAANHILSLDQLSFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKGYMLCGALAEVEPYN  825
              AAN IL+LD    DG                KK ++     ++K+  LC++L E  P +
Sbjct  763   -AANYILGLD----DG----------------KKRYFDVVLALNKAWSLCSTLDEAKPLQ  801

Query  826   QEIAFYDAVRAILTK--REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQIS  883
             +E+AF  AV+  + K    +K  + +E++ LL +++++++ + GV D+F L    +P+I+
Sbjct  802   KELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIG  861

Query  884   LLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFEQRLKEALNQYHNHN  943
             LLS+EFL+ V++ P +NL V  +E+ L   I  ++  N+  +K + +RL+  L +Y+N+ 
Sbjct  862   LLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRA  921

Query  944   LTVVEILDQLFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLAK  1003
             +   +++++L++M+++FQ  +A +  LGL  +E+AFY+AL++N+SA   +GDE L KLA 
Sbjct  922   IETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAI  981

Query  1004  EITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAEDL  1063
             E+T  LRKS T+DWQ +E+VRAR+R+LVR++L KYKYPPDK  +AV  ++KQAE +++  
Sbjct  982   EVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

Query  1064  TG  1065
             T+
Sbjct  1042  TA  1043

123) MROS_1287 in NC_018178


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  780 bits (2952),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1096 (45%), Positives = 753/1096 (69%), Gaps = 68/1096 (6%)

Query  5     LIESDIEQFTIELLENLGYEYVSPASISPDGDQPERQTFDDVLLINKLKNAVDRIIPTIP  64
             L E D+EQ+++  +   G E +  + I+PDG +P R +F+DV+L   +++ ++ + P +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    AEAKEDAIKQILRISSPDLITNNETFHRMLTEGINVTYSKDGNQRGDLVWLIDFKNPENN  124
             A   ++ I +I R  SPD++ +N +FH++L  G+ V Y +D++   D   L+DF++PENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  125   EFtvvnqftvtstssvtgtvIKRPDVILFVNGIPLVVIELKNAVDEEATIKSAFKQIQTY  184
              FTVVNQ ++++T       ++RPDVI ++NG+P+ VIELK++ D +A I +AF+Q+QTY
Sbjct  122   RFTVVNQVAISGTKQ-----LRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  185   KQTIPQLFTYNGFAVISDGLEARAGTISSDFSRFMAWKSVDGTKEASHLVSQLEILIKGM  244
             K+ I++LF  N   VISDG +AR G++++D  RF++WK++    + + L  QLE +++G 
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  245   LNKNTLLDLIRHFIVFEKSKKEDPDSNLTFIQTTKKLAGYHQYFAVNKAIERTLQAASGN  304
             +N++ LLD IR FI+FE   K          +  KK+A+YHQ+ AV  A++ T+ A++G+
Sbjct  237   FNRELLLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATIVASTGK  286

Query  305   ----------GNRKGGVIWHTQGSGKSLTMVFYAGKIVLQ--LDNPTILVITDRNDLDDQ  352
                       G++K+GV+WHTQGSGKS++M  YAGK++ Q  ++NPTI+V+TDRNDLD+Q
Sbjct  287   FLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQ  346

Query  353   LFDTFADSKQLLRQEPVQAENREHLKELLKV-SSGGIVFTTIQKFQSDTSTGSVSDSKYE  411
             L+ TF ++K+LL+QEP QA NR++L+E+L    SGGI+FTT+QKF +  +     +    
Sbjct  347   LYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDG-----EQAHP  401

Query  412   QLSERTNIVVIADEAHRTQYGFKARTIDERDENGNHIGKKTVYGFAKYLRDALPNATFIG  471
              L+ R NIVVI+DEAHR+QYG+ A      D +G        YG+AK +RDALPNA+F+G
Sbjct  402   ALNLRDNIVVISDEAHRSQYGLSATL----DKDGAYK-----YGYAKHMRDALPNASFMG  452

Query  472   FTGTPIEKTDKNTPAVFGDYVDIYDIAQAVEDGATVRIFYEGRLAKINLSEEG-KKLIKE  530
             FTGTP+   DK+T AVFGDYV IYDI +AV+DGATV I+YE+RLAK++L++E    L  +
Sbjct  453   FTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQ  512

Query  531   LDAELESEDITSTQRAKAKWTQLEALVGSEDRFKQIAADIIYHYEERQKVFEGKAMIVAM  590
             +D  +E E+    +++K+ W++LE LVGSE R+KQ+AAD++ H+  R+   +GKAMIVAM
Sbjct  513   VDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAM  572

Query  591   SRRIAVKLYDEIIKLRPDWHNEDLKKGKIKVVMTAASSDGPELAKHHTTKDQRRVLADRM  650
             SR I V+LY+ ++ LRP+WH+ED+ KG IK++MT+++SD  +L  H   K+ ++ L  R 
Sbjct  573   SRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARF  632

Query  651   KNPDDELKIVIVRDMWLTGFDVPCLHTLYIDKPMQGHTLMQAIARVNRVYKDKPGGLIVD  710
             K+ +D LKIVIVRDMWLTGFD PC HT+YIDKPM+GH LMQAIARVNRV+KDKPGGL+VD
Sbjct  633   KDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVD  692

Query  711   YLGIASDLKQALSFYSDSGGKGDPAIAQEKAVQLMLEKLEIVSRMFLEKPVKPYSKDYEE  770
             Y+GIA++LKQAL  Y+DS GKG+ +I    A  ++LEKL+++  MF      P + DY  
Sbjct  693   YIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDP-GFDYSA  751

Query  771   LVKDPSVPYLGKDKGLLYEQYFTADAKTKLDIILAAEEHILSLENGKKRFIDEVTALSKA  830
             + ++P                         +++L A + IL+L++GKKR++D V AL+KA
Sbjct  752   FENNPQ------------------------HVLLDAANYILGLDDGKKRYFDVVLALNKA  787

Query  831   FAIAIPHEQALDVKDEVAFFQAVKARLLKFDSSSPGKSSEEIETTIKQVIDKALVSDRVI  890
              ++    ++A  ++ E+AF+ AVK  ++K+ ++    S  E ++ + +++D+A+V+  V 
Sbjct  788   WSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVD  847

Query  891   DIFDAAGIKKPDISILSEEFLMEVRNMQHKNIALETLRKLLNDEIKSRIRTNLVQGKTLM  950
             D+F  AG+ KP+I++LS+EFL EVR+M ++N+A+E L KLLND I +R   N+VQ K   
Sbjct  848   DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYS  907

Query  951   EMLEKSIKKYHSKILTAAEVIEELIALGKEIQNLDKEPKEMGLSDFEYAFYTAIANNDSA  1010
             + L   + +Y+++ + +A+VIEELI ++KE+Q        +GL+  E AFY A+A+N+SA
Sbjct  908   DRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESA  967

Query  1011  REVMKKDKLRELAIVLYDRVRKNATIDWTLKESVKAKLKVIVKRTLRQYGYPPDMQKLAT  1070
                +  + L+ LAI +  ++RK++T+DW ++ESV+A+L+++V++TL +Y YPPD    A 
Sbjct  968   VRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAV  1027

Query  1071  ETVLKQAELIANELTD  1086
             E +LKQAE+++N  T 
Sbjct  1028  ELILKQAEVVSNSWTA  1043

124) Rfer_4010 in NC_007908


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  780 bits (2952),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/1077 (45%), Positives = 744/1077 (70%), Gaps = 46/1077 (4%)

Query  1     MLTESAIETFAIKLFERLGYVYLHGPDIAPDSDGPERSSYAEVLLPGRLAQAAGRINHKL  60
             ML+E  +E +++  F   G   LHGPDIAPD+  P R S+ +V+L   + +    +N  L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  61    PRDVVEMALKEVQRAHSPDLLASNEAFHRLLTEGVPVSMQKDGDTRGERVWLIDFARPEN  120
             P  + +  +  + R++SPD++ SN AFH+LL  GVPV  ++D+    +   L+DF +PEN
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  121   NEFVVANQFTVIENHQKKRPDLVLFVNGIPLVVIELKNAADENATLKSAYQQIETYKQAI  180
             N F V NQ ++    Q +RPD++ ++NG+P+ VIELK+++D NA + +A++Q++TYK+ I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  181   PSLFTANALVVISDGLEAKAGSISASLSRFMAWKSADGKAEASHLVSQLEALILGMLNQG  240
             + LF  N  +VISDG +A+ GS++A   RF++WK+     + + L  QLE ++ G +N+ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  241   TLLDLVRHFIVFEKGSKEDPNTGQITISTIKKLAAYHQYYAVNAAVASTLRAADMGGPLS  300
              LLD +R FI+FE ++K            IKK+AAYHQ+ AV  AV +T+  A  G  L+
Sbjct  241   LLLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNATI-VASTGKFLP  289

Query  301   VRENPASYGLPGIADQPKSDMKAGVVWHTQGSGKSLSMVFYTGKIV--LTLDNPTVLVIT  358
             +R N  +           +  KAGVVWHTQGSGKS+SM  Y+GK++    ++NPT++V+T
Sbjct  290   LRSNIKP-----------GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVT  338

Query  359   DRNDLDDQLFNTFAASKQLLRQEPVQAKDREHLKALLKV-AAGGVVFSTIQKFQPDEGN-  416
             DRNDLD+QL+ TF  +K+LL+QEP QA +R++L+ +L    +GG++F+T+QKF P +G+ 
Sbjct  339   DRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQ  398

Query  417   VYDQLSNRPNIVVIVDEAHRTQYGFAAKTVDEKNADGMVIGKKVVYGFAKYLRDALPRAT  476
                 L+ R NIVVI DEAHR+QYG++A T+D   A          YG+AK +RDALP A+
Sbjct  399   AHPALNLRDNIVVISDEAHRSQYGLSA-TLDKDGA--------YKYGYAKHMRDALPNAS  449

Query  477   YLGFTGTPIEKTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVSLSEEG-KKL  535
             ++GFTGTP+   D +T AVFG+YV IYDI +AV+DGATV IYYESRLAK+ L++E    L
Sbjct  450   FMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEAL  509

Query  536   IAeldeeleqdeltetqKPKAKWTKMEALIGSEQRVKNIARDIVGHFEARQEVFAGKGMV  595
              +++D+ +E++E  + +K K+ W+++E L+GSE R+K++A D+V HF AR+    GK+M+
Sbjct  510   SSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMI  569

Query  596   VSMSRRIAADLYDEIIKLRPDWHADELSKGVIKVVMTAASSDGPKLAKHHTTKEQRKLLA  655
             V+MSR I   LY+ ++ LRP+WH++++ KG IK++MT+++SD   L  H   K+ +K L 
Sbjct  570   VAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLE  629

Query  656   ERMKAEDDPLKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDKPGGL  715
              R K  +DPLK+VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV+KDKPGGL
Sbjct  630   ARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGL  689

Query  716   VVDYLGIAADLKEALSFYSDAGGKGDPTLLQEQAVGLMLEKLEVISALY------HGFAY  769
             VVDY+GIA +LK+AL  Y+D+ GKG+ T+   +A +++LEKL+VI +++       GF Y
Sbjct  690   VVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY  749

Query  770   EHYFGANTAQKLSLILAAEEHILGLDDGRKRYINEVTALSQAFAIAIPHEQAMDVKDEVG  829
               +   N +Q   ++L A + ILGLDDG+KRY++ V AL++A ++    ++A  ++ E++
Sbjct  750   SAF--ENNPQH--VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELA  805

Query  830   FFQAVKARLVKYDSVEGERSNEEIETTIRQVIDQALVSEKVIDVFDAAGIKKTDISILSD  889
             F+ AVK  ++K  + +   S+ E ++ + +++D+A+V+  V DVF  AG+ K +I++LSD
Sbjct  806   FLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSD  865

Query  890   EFLAELKGYEHKNVALEVLKKLLNDELKIRAKRNLVQSRSLMEMLEASIKKYHNKILTAA  949
             EFL E++   ++N+A+E+L KLLND +  R++ N+VQ +   + L A + +Y+N+ + +A
Sbjct  866   EFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETA  925

Query  950   EVMDELIKVSKEIVAADDEARHMGLSDFEYAFYTAVANNDSARELMQQDKLRELAVVLTQ  1009
             +V++ELI+++KE+ AA      +GL+  E AFY A+A+N+SA   + ++ L+ LA+ +T 
Sbjct  926   QVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTA  985

Query  1010  RVRENASIDWTIKENVRAKLKVIVKRTLRQFGYPPNMELLATETVLKQAEMIANELT  1066
             ++R ++++DW ++E+VRA+L+++V++TL ++ YPP+  L A E +LKQAE+++N  T
Sbjct  986   QLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

125) Syn6312_0882 in NC_019680


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  778 bits (2945),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 505/1060 (48%), Positives = 753/1060 (72%), Gaps = 40/1060 (3%)

Query  4     VTEDDIEQVLIEQLQHLGYHYLPDSVANPDGTAPERESYADVILPQRLRDALDRLNPTIP  63
             ++EDD+EQ+ +  +   G + L ++   PDG  P R S+ DV+L   +R  L+ LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ATARDDAFKKLIATEKPNLIEENRRLHQLLIEGIDVEFYSDDGTIRGDKVYAIDFAQPEQ  123
             A+  D+ + ++   E P+++  N+ +H+LL+ G+ VE+  DD  I+ D    +DF +PE+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIH-DTALLMDFNHPEN  120

Query  124   NDWLVLNQFTVIEAGQNRRSDVVVFVNGLPLAVIEIKNPGTETATLAAAYNQLQTYKAQI  183
             N   V+NQ ++  + Q RR+DV+ ++NGLP+AVIE+K+P+   A + AA+NQLQTYK +I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   SSLFRTNAVLVTTDGLMARIGSLTADLERFMPWRTTDGETIAPKGTPEMSTLVEGVFTKR  243
             S LF  N  LV +DG  ARIGSLTAD ERF+PW+T   E   P    ++  +V+G F + 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   HLLNLIQNFTVFGDDGTGITKIIAGYHQFHGVQKAIAKTIAATH----------QTGDRK  293
              LL+ I+ F +F  DG  + K IA+YHQFH+V+ A+  TI A+           + G +K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   AGVIWHTQGSGKSLLMAFYVGQLVRRPELENPTIVVITDRNDLDDQLFATFAMCRDLIRQ  353
             AGV+WHTQGSGKS+ M  Y G+L++++E++NPTIVV+TDRNDLD+QL++TF   +DL++Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   TPQQANSREDLQTLLN-QVSGGVIFTTIQKFAPPTGETRYPVLTERRNVIVIADEAHRSQ  412
              PQQA++R++L+ +L  + SGG+IFTT+QKFAP  GE   P L  R N++VI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  413   YGFKAKVDQKSGVIAYGFAKYLRDALPHASFIGFTGTPIEASDVNTPAVFGNYIDIYDIS  472
             YG+ A +D K G   YG+AK +RDALP+ASF+GFTGTP+ + D +T AVFG+Y+ IYDI 
Sbjct  421   YGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  473   RAVEDGATVPIYYESRLARIELPEDE-KPKidaeiedliddedsdQARLSQKWATVQALV  531
              AV+DGATVPIYYESRLA+++L ++E  +      + + D+E  ++ +    W+ ++ LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  532   GAEKRLKQVARDLVTHFENRITALKGKAMIVCMSRAICVKLYNHIIELRPDWHSDDEQAG  591
             G+E R+KQVA DLV HF  R ++++GKAMIV MSR ICV+LYN ++ LRP+WHS+D + G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  592   IIKIVMTGAASDPPEWQPHIGNKARRDLMAKRLKDPTDPLQLVIVRDMWLTGFDAPALHT  651
              IKI+MTG+ASD  + QPHI NK  +  +  R+KD  DPL++VIVRDMWLTGFDAP  HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  652   MYVDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQRLREALRDYSAQDQR-QTGID  710
             MY+DKPM+GH LMQAIARVNRVF+DKP+GLVVDYIGI++ L++AL+ Y+    + QT ID
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  711   EAEAVALMLEKYDVVRAMF------HGFNYQRGLDGTPQERLVVMAEAMEWILDQQHQAA  764
               +A A++LEK DV+++MF       GF+Y  +++  PQ+   V+ +A + IL      +
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYIL------G  769

Query  765   LQETEPTKQKQARRRYQDavlalskafalaaasdearsIRDEVGLFQTIRAALVKSTTGP  824
             L++        +++RY D VLAL+KA +L ++ DEA++++ E++++ +++ A++K TT  
Sbjct  770   LDD--------GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  825   GQ-SAAEREFAVQQIIDRAVVSTEIVDILSAAGlsspdisilsddfllEVRQMEKKNLAI  883
              + S +E++  + +I+D A+V+T + D+++ AGL  P+I++LSD+FL EVR+M ++NLA+
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  884   EALRRLLNDEVRSRSANNITQQKKFSERLEQAIARYHTNALSTVEVIQELINLAQDIKAA  943
             E L +LLND +++R+ NN+ Q+KK+S+RL   + RY+  A+ T +VI+ELI++A++++AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  944   KARGENQGLSADEYAFYDALAENQSAVEVMGNEQLKIIAHELLVSLKSNVTVDWAHRESA  1003
              AR++  GL++DE AFYDALAEN+SAV  +G+E LK +A E+   L+ + TVDW  RES 
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1004  RARLRTIVKRILKKYGYPPDMQAMAVQTVLQQAEALSAHW  1043
             RARLR +V++ L KY YPPD    AV+ +L+QAE +S  W
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

126) SYN_00497 in NC_007759


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  776 bits (2938),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1062 (47%), Positives = 733/1062 (70%), Gaps = 49/1062 (4%)

Query  4     LFESDVEEFVIELLQNQDFEYL-----SPEQQENERESLSTVIFRDRLKQAINQINPKVP  58
             L E D+E++ +  +  Q+ E L     +P+ ++  R S+  V++R  +++ ++ +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  59    APAREQAFKQVFNLSSQSLMVNNEAFHLMLTEGIEVEYMGKKGIKGDKVSLIDFENIENN  118
             A+  ++ + ++    S  ++V+N AFH +L  G+ VEY     +  D   L+DF++ ENN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  119   EFLVCNQFTVIENNINKRPDVVVFINGLPLVVIELKNPADENATVQKAFTQLQNYKKAIP  178
              F V NQ ++   +  +RPDV+ +INGLP+ VIELK+P+D NA +  AF QLQ YK+ I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  179   SLFHYNSILIASDGLDAKTGTISSDISRFVAWKSKDGFTEDKETV-PQIETMVRGMLSKE  237
              LF  N  L+ SDG +A+ G++++D  RF++WK+     +DK  +  Q+E +V G +++E
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISN-EDDKPLLEHQLENVVNGFFNRE  240

Query  238   TLIDLIRHFIVFEKSKKEDLETGLTSVVAIKKIAAYHQYYAVNKAIQSTLIASGTD----  293
              L+D IR FI+FE   K            IKKIAAYHQ+ AV  A+++T++AS       
Sbjct  241   LLLDYIRYFILFESDGKR----------LIKKIAAYHQFHAVREAVNATIVASTGKFLPL  290

Query  294   ------GNRKAGVVWHTQGSGKSLSMVFYTGKTV--FKLNNPTVVVLTDRNDLDDQLFDT  345
                   G++KAGVVWHTQGSGKS+SM  Y+GK +    +NNPT+VV+TDRNDLD+QL+ T
Sbjct  291   RSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTT  350

Query  346   FASCKQLLRQEPVQAESRESLKNLLKV-AGGGIVFTTIQKFFPESGASDYEQLSERKNII  404
             F   K+LL+QEP QA +R+ L+++L    +GGI+FTT+QKF P  G      L+ R NI+
Sbjct  351   FCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIV  410

Query  405   VIADEAHRSQYGFGAKTRIVKKNGKDEEAVTRYGFAKYMRDALPNASFIGFTGTPIEKED  464
             VI+DEAHRSQYG++A          D ++  +YG+AK MRDALPNASF+GFTGTP+  ED
Sbjct  411   VISDEAHRSQYGLSATL--------DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSED  462

Query  465   ASTPAVFGNYVDVYDIAQAVEDGATVKIFYESRLAKVHLKPEERAKLDeeaesigegeet  524
               T AVFG+YV +YDI +AV+DGATV I+YESRLAK++L+ EE   L  + + + E+EET
Sbjct  463   KDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET  522

Query  525   akekakakw-aqieaIVGHSDRLKTVAADIIDHFEKRQQVFEGKGMIVCMSRRIAVELYE  583
              +        +++E +VG   R+K VAAD++ HF  R+   +GK+MIV MSR I V LY+
Sbjct  523   DQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYN  582

Query  584   QIIELRPEWENDDLKKGCIKVVMTSASSDPEKWQKHSTTKKDRKAIADRFKDTADPLKLV  643
              ++ LRPEW+++D+ KG IK++MT+++SD E  Q H   K+ +K +  RFKD  DPLK+V
Sbjct  583   ALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIV  642

Query  644   IVRDMWLTGFDVPCLHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLIVDYIGIASDLKS  703
             IVRDMWLTGFD PC HTMY+DKPMRGHNLMQAIARVNRVFKDKPGGL+VDYIGIA++LK 
Sbjct  643   IVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQ  702

Query  704   ALATYTASGGKGTPTLDQEEAVATLLEKFEIVEQMFD------GFDYKGFFTSSTQEKLI  757
             AL TYT S GKG  T+D  +A A LLEK+++++ MF       GFDY +F  ++ +    
Sbjct  703   ALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----  758

Query  758   LILEAQEHILGLEDGKNRFTKQVSLLSQAFALSVPHPKAMEIKDEVGFFQTVKARLVKFE  817
             ++L+A + ILGL+DGK+R+   V  L++A +L      A  ++ E++F+ +VK  ++K+ 
Sbjct  759   VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLT  818

Query  818   PTGSGKSDAEVETAIRQIVDKAVVSDGIIDVFDAAGIKKPDISILSDDFMEEVRHMERKN  877
              T+   S++E ++ + +I+D+A+V+ G+ DVF  AG+ KP+I++LSD+F+EEVR+M ++N
Sbjct  819   TTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRN  878

Query  878   LALELLKKILNDEIKTRTRKNLIQSKKLSEMLENAINKYQNNLLTTAQVIEELIKLAKEF  937
             LA+ELL K+LND I +RT +N++Q KK S+ L   + +Y+N  + TAQVIEELI++AKEF
Sbjct  879   LAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEF  938

Query  938   KESDKRGKDLNLNDEELAFYDALANNESAKQVLGDKQLAVIAIEVFNSIKRNATIDWTLK  997
             + +  R+  L LN +E+AFYDALA+NESA + LGD  L  +AIEV   +++++T+DW ++
Sbjct  939   QAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVR  998

Query  998   ETVRARLRRDVKRILKRYGYPPDMQLLATENVLKQAELMADG  1039
             E+VRARLR  V++ L +Y YPPD  L A E +LKQAE+++++
Sbjct  999   ESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

127) Mmol_0222 in NC_012968


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  772 bits (2923),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1081 (46%), Positives = 759/1081 (71%), Gaps = 53/1081 (4%)

Query  4     ITESDIETLAIERLQALGFSYVYAPDIAPDSTTPERESFAEVLLLSRLRNAITRINPTLP  63
             ++E D+E L++ ++ + G   + +PDIAPD+  P R SF +V+L + +R+ +  +NP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    ATALDEAIKTIQRISSPELLANNETFHRLLREGVNVSYQKDG--LQRGDLVWLIDFINPQ  121
             A+ +DE I  I R  SP+++ +N +FH+LL  GV V Y++D+  ++   L  L+DF +P+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL--LMDFNHPE  119

Query  122   NNDFVVANQFKIIENNQNKRPDVILFVNGIPLVVIELKNAADENATIKTAYQQLNTYKET  181
             NN F V NQ  I   +Q +RPDVI ++NG+P+ VIELK+++D NA I +A++QL+TYK+ 
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  182   IPSLFTYNGFVIVSDGLEAKAGSISAGFSRFMAWKTADGKSEASKLTGQLETLINGMLNK  241
             I+ LF  N  +++SDG +A+ GS++A+  RF++WKT     + + L  QLE ++NG +N+
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  242   STLLDLIRHFIVFEKSSKEGPKQADGTPGLISISTVKKLAAYHQYYAVNAAVISTLRATA  301
               LLD IR FI+FE  +K                 +KK+AAYHQ+ AV  AV +T+ A++
Sbjct  240   ELLLDYIRYFILFESDGK---------------RLIKKIAAYHQFHAVREAVNATIVAST  284

Query  302   EAVSLAQTPASYGLSDVRNQPNGDRKAGVVWHTQGSGKSLSMVFYTGKIV--LALNNPTI  359
                      + + L+   N   G +KAGVVWHTQGSGKS+SM  Y+GK++    +NNPTI
Sbjct  285   ---------GKF-LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTI  334

Query  360   LVITDRNDLDDQLFDTFASSSQLLRQEPKQVEDRQQLKELLKV-ASGGVIFTTIQKFQPE  418
             +V+TDRNDLD+QL+ TF  + +LL+QEP+Q  +R+QL+E+L    SGG+IFTT+QKF P 
Sbjct  335   VVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPL  394

Query  419   EGN-VYETLSDRRNIVVIADEAHRTQYGFKAKTVDDKNKAGDVIGQKIVYGFAKYMRDAL  477
             +G+    +L+ R NIVVI+DEAHR+QYG+ A      +K G        YG+AK MRDAL
Sbjct  395   DGEQAHPALNLRDNIVVISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDAL  445

Query  478   PNATYLGFTGTPIESTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVQLSDEG  537
             PNA+++GFTGTP+ S D +T AVFG+YV IYDI +AV+DGATV IYYESRLAK++L++E 
Sbjct  446   PNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEE  505

Query  538   -KKLVAeldeeleqdeltetqKAKAKWTQIEALIGSENRIKNVAQDIVAHFEQRQEVFDG  596
                L +++D+ +E++E  + +K+K+ W+++E L+GSE RIK+VA D+V HF  R+   +G
Sbjct  506   LEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNG  565

Query  597   KGMIVSMSRRIAAELYDAIIKLKPEWHSNEPHKGVIKVVMTAASADGPMLAKHHTTKLQR  656
             K+MIV+MSR I   LY+A++ L+PEWHS++ +KG IK++MT++++D   L  H   K  +
Sbjct  566   KAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTK  625

Query  657   KALAERMKDPDDELKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDK  716
             K L  R KD +D LK+VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV+KDK
Sbjct  626   KRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDK  685

Query  717   PGGLIVDYLGIASDLKEALSFYSDAGGKGNPAETQEQAVALMLEKLEIVSDMY------H  770
             PGGL+VDY+GIA++LK+AL  Y+D+ GKG+ +    +A A++LEKL+++ +M+       
Sbjct  686   PGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDP  745

Query  771   GFPYEDYFEADTSKKLSLILAAEEHILGIDDGKRRYVNEVTALSQAFAIAIPHDQAMDVK  830
             GF Y   FE +      ++L A + ILG+DDGK+RY + V AL++A ++    D+A  ++
Sbjct  746   GFDYSA-FENNPQH---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQ  801

Query  831   DEVAFFQAVKARLAKFDSTGNGRTDEEIETTIRQVIDQALVSEQVIDVFDAAGIKKPDis  890
              E+AF+ AVK  + K+ +T++  ++ E ++ + +++D+A+V+  V DVF  AG+ KP+I+
Sbjct  802   KELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIG  861

Query  891   ilseefllelKNHEHKNVALEVLKKLLNDELKVRAKKNLVQSKSLMEMLENAIKKYHNKI  950
             +LS+EFL E+++  ++N+A+E+L KLLND +  R+++N+VQ K   + L   + +Y+N+ 
Sbjct  862   LLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRA  921

Query  951   LTAAEVMDELIKISKEIVASDNEAKGLGLSEFEYAFYSAVASNNSAKELMQHEQLRELAV  1010
             + +A+V++ELI+++KE+ A+     +LGL+  E AFY A+A N+SA   + +E L+ LA+
Sbjct  922   IETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAI  981

Query  1011  VLTQRVRENASIDWTIKENVKAKLKVIIKRTLRQFGYPPDMQLLATETIMKQAEMIATEL  1070
              +T ++R ++++DW ++E+V+A+L++++++TL ++ YPPD  L A E I+KQAE+++   
Sbjct  982   EVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

Query  1071  T  1071
             T
Sbjct  1042  T  1042

128) Dgeo_2012 in NC_008025


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  771 bits (2918),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/1061 (49%), Positives = 765/1061 (73%), Gaps = 44/1061 (4%)

Query  4     LSEAEVENALLDQLRALGYSIEREEDIGPDGHRPERESHDEVVLRKRFEDAVARLNPGVP  63
             LSE ++E+  L+ + + G  + +  DI+PDG  P R S ++V LR  F   +  LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    LEARHDAVRRVTQSELPSLLAENRRLHKLLTEGVDVEYYADDGVLTAGKARLIDFDDPAN  123
                 ++ + R+T++E P ++  N+ +H LL  GV VEY  DD V+    A L+DF++P N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDT-ALLMDFNHPEN  120

Query  124   NDWLAVNQFVVINGQYQRRPDVVVFVNGLPLAVIELKAPGNDQATLTGAFNQLQTYKGEI  183
             N    VNQ  +   +  RRPDV+ ++NGLP+AVIELK+P++ +A + +AFNQLQTYK EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   TQLFRTNALLVTSDGISARVGSLSADFERFMPWRTTDGREVAPKGAPELETLIEGVFEHR  243
             ++LF  N  LV SDG +AR+GSL+AD ERF+PW+T    +  P    +LE +++G F++ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RLLDLLRHFTVFGETGAGLIKIIAGYHQFHAVRHAVERTVAASSA----------GGDRK  293
              LLD +R F +F   G  LIK IA+YHQFHAVR+AV+ T+ AS++           G +K
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  294   AGVIWHTQGSGKSLLMAFYAGLLVRHPALENPTLVVLTDRNDLDDQLFATFSMCRDLIRQ  353
             AGV+WHTQGSGKS+ M  YAG L++++ ++NPT+VV+TDRNDLD+QL++TF   +DL++Q
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  354   TPVQAEGREHLKTLLD-RASGGVIFTTLQKFGEIDG-----PLTTRRNVVVIADEAHRSQ  407
              P QA  R++L+ +L  R SGG+IFTT+QKF+ +DG     +L  R N+VVI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  408   YGFKAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEAGDVNTPAVFGHYIDIYDIS  467
             YG+ A +D K G   YG+AK +RDALPNASF+GFTGTP+ + D +T AVFG+Y+ IYDI 
Sbjct  421   YGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  468   RAVEDGATVPIYYESRLARIELDEDEKPKidaeieeiledeeepareraKQKWATVEALV  527
              AV+DGATVPIYYESRLA+++L+++E   + +++++++EDEE   +E++K  W+ +E LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  528   GADKRLRLIAQDIVQHFEARVAALDGKAMIVCMSRRICVKLYNEIVKLRPGWHSDDDNAG  587
             G++ R++ +A D+V+HF AR A+++GKAMIV MSR ICV+LYN +V LRP WHS+D + G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  588   AVKIVMTGAASDPPEWQKHIGNKarrdllarrardPKDPLKLVIVRDMWLTGFDAPCMHT  647
              +KI+MTG+ASD  + Q HI NK  +  L  R +D +DPLK+VIVRDMWLTGFDAPC HT
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  648   MYVDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKNALAQYS-PRDRENTGID  706
             MY+DKPMRGH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK+AL  Y+ ++++ +T ID
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  707   EAEAIAVMLEKYEVVRDMF------HGFDYRSGLNGSPQERLAMMAGAIEWILERQQQWA  760
               +A+AV+LEK +V+++MF       GFDY S+++ +PQ+   ++ +A + IL       
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYIL-------  768

Query  761   AQETTPEGKKAAHRRFGDavlalskayalasasDPARAIREEVGFFQAIRAALIK-SSTG  819
                    G   + +R+ D VLAL+KA +L S+ D A++++ E++F+ A++ A+IK ++T+
Sbjct  769   -------GLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  820   SDANPQAREWAIQQIVSRAVVSTEIVDILTAAGIKSPDISILSDDFLAEVQQMEKKNLAL  879
                +   ++  + +I+  A+V+T + D+++ AG+  P+I++LSD+FL EV++M ++NLA+
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAV  881

Query  880   EALRKLINDGIRSRAKANVVQTRAFSQRLEDAVARYHANAITTAEVLQELIHLAKDIRAA  939
             E L KL+NDGI++R++ NVVQ + +S+RL   + RY+  AI TA+V++ELI++AK+++AA
Sbjct  882   ELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAA  941

Query  940   RQRGEESGLSDEEIAFYDALAENESAVQVMGDEKLRVIAHELLVNLRENVSVDWAHRESa  999
               R++  GL+ +EIAFYDALAENESAV+ +GDE L+ +A E+  +LR + +VDW  RES 
Sbjct  942   MARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESV  1001

Query  1000  rarlrvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSAVWS  1040
             RARLR+LV++ L KY YPPD    AV+ +L+QAE +S  W+
Sbjct  1002  RARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWT  1042

129) XF2739 in NC_002488


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  771 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1045 (47%), Positives = 742/1045 (72%), Gaps = 44/1045 (4%)

Query  21    GYSIEREENIGPDGYRPERASHDEVVLKQRFVDAVARLNPGLPPEARQDAIRKVTQSELP  80
             G  + +  +I+PDG  P R S ++V L+  F   +  LNP LP+   ++ I ++T++E P
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  81    SLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFDHPQQNDWLAVNQFVVIADHYN  140
              ++  N+ +H+L+  GV VEY  +D+ +  +   L+DF+HP++N    VNQ  + +    
Sbjct  79    DIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  141   RRPDVVLFVNGLPLAVIELKAPGSINATLIAAFNQLQTYKEQIPALFNTNALLVTSDGMT  200
             RRPDV+ ++NGLP+AVIELK+P+ +NA + AAFNQLQTYK++I+ LF  N  LV SDG  
Sbjct  138   RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  201   ARFGALSADLERFMPWRTTDGTDIAPKGVPELATLIEGICEPHRLLDLLRHFTVFRKTDA  260
             AR+G+L+AD ERF+PW+T    D  P    +L  +++G+ + + LLD +R F +F   + 
Sbjct  198   ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  261   GLAKIIAGYHQFHAVRQAINSTVAASSPQ----------GNQRIGVIWHTQGSGKSLLMA  310
              L K IA+YHQFHAVR+A+N+T+ AS+ +          G+++ GV+WHTQGSGKS+ M 
Sbjct  258   RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMC  317

Query  311   FYAGQLVKHPAMANPTLVVLTDRNDLDDQLFTTFSQCSDLIRQTPVQAQSRDQVRKLLN-  369
              YAG+L++++ M NPT+VV+TDRNDLD+QL+TTF Q  DL++Q P QA +RDQ+R +L  
Sbjct  318   CYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAA  377

Query  370   RASGGVIFTTLQKF----GDITEP-LTTRRNVVVIADEAHRSQYGFKAKVDTKTGKISYG  424
             R SGG+IFTT+QKF    G+ ++P L  R N+VVI+DEAHRSQYG+ A +D K G   YG
Sbjct  378   RESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYG  436

Query  425   FAKYMRDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISRAVEDGATVPIYYESRL  484
             +AK MRDALPNAS +GFTGTP+ ++D +T AVFG+Y+ IYDI  AV+DGATVPIYYESRL
Sbjct  437   YAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRL  496

Query  485   ARIALDEAEKPQIDAEVNALTEADSEAEQERFKKKWATVETLVGSDKRLALIAKDIITHC  544
             A++ L++ E   + ++V+ L E +   ++E+ K  W+ +E LVGS+ R+  +A D++ H 
Sbjct  497   AKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHF  556

Query  545   EDRLAALDGKAMVVCMSRRICVALYDHIVALRPDWHSTDHKAGSLKIVMTGTASDPPQWR  604
               R A+++GKAM+V MSR ICV LY+ +VALRP+WHS D   G +KI+MTG+ASD  + +
Sbjct  557   AARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQ  616

Query  605   QHIGNKarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHTMYLDKPMQGHGLMQAIA  664
              HI NK  +  L  R +D +DPLK+VIVRDMWLTGFDAPC HTMY+DKPM+GH LMQAIA
Sbjct  617   PHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIA  676

Query  665   RVNRVFRDKPAGLIVDYIGIAQNLRTALQQYS-KNDQQHTGVDEAQAIALMMEKYQIVRD  723
             RVNRVF+DKP+GL+VDYIGIA++L+ AL+ Y+  +++ +T +D  +A+A+++EK +++++
Sbjct  677   RVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHG  736

Query  724   MY------HGYDYHTAMSGTPQERLAMMGGAIEWilnlqqqlaaiaqTKEGKKEAHRRYQ  777
             M+       G+DY +A    PQ+ L   +  I                  G  ++ +RY 
Sbjct  737   MFAKTTTDPGFDY-SAFENNPQHVLLDAANYI-----------------LGLDDGKKRYF  778

Query  778   DavlalskafalasasDEARHIREDVGFFQAIRAALVK-SADHSGGSEPQRDLAIQQIVS  836
             D VLAL+KA +L S+ DEA+ ++ +++F+ A++ A++K ++ +   S+++++  + +I+ 
Sbjct  779   DVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILD  838

Query  837   RAVVSTEIVDILAASGINSPDISILSDAFLAEIQQMQRKHLALEALRKLLNDRIRSRSTV  896
              A+V+T + D++A +G++ P+I++LSD FL E+++M +++LA+E L KLLND I++R+  
Sbjct  839   NAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNN  898

Query  897   NLVQTKAFSERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRGEASGLSDEEVAFY  956
             N+VQ K +S+RL + + RY+  AI TAQV++ELIQ+AK+++AA  R++A GL+ +E+AFY
Sbjct  899   NVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFY  958

Query  957   DALAENESAVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARMRVLVKRILRKYGY  1016
             DALAENESAV+ +GD+TL+ +A E+  +LR + +VDW  R+S RAR+R+LV++ L KY Y
Sbjct  959   DALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKY  1018

Query  1017  PPDLQNTAVQTVLQQAEAFSSQWSA  1041
             PPD    AV+ +L+QAE  S+ W+A
Sbjct  1019  PPDKALDAVELILKQAEVVSNSWTA  1043

130) Clocl_1698 in NC_016627


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  769 bits (2909),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1067 (48%), Positives = 738/1067 (70%), Gaps = 46/1067 (4%)

Query  4     LCESEIEKMAIEELVKLGYEYFSGPDIAPDAPFAERKGYGDVLLKKRLIDAVIQLNPGLP  63
             L E ++E++++  +   G E + GPDIAPD+  + R ++ DV+L+  +   +  LNP LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    YDVVIEAVNKVSRISSSNLIGDNETFHKMLVDGVPVEYRKNGDIVGDYVKLVDFSEDGVD  123
               +  E +++++R  S++++  N +FH +L+ GVPVEY++++ ++ D   L+DF++   +
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHP--E  119

Query  124   NNEFLVVNQFTVIENNNNKRPDILLFINGIPMVLFELKNPVDENATIRKAYDQICTYKAI  183
             NN F VVNQ ++   ++ +RPD++ +ING+P+ ++ELK+P D NA I+ A++Q+ TYK  
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  184   IPSLFTYNEICVISDGLEAKAGSLTAPFSRFSTWKTKDGLNEASRFEDQLTTLIHGLCNK  243
             I+ LF  NE  VISDG +A+ GSLTA   RF  WKT    ++ + +E+QL  +++G+ N+
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  244   KTLLDYIRNFITFEksktedkktkitkvetvkkiAAYHQYYAVNKAVKSTIEAARAD---  300
               LLDYIR FI FE       K            AAYHQ+ AV  AV++TI A+ +    
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKI----------AAYHQFHAVREAVNATIVASTGKFLP  289

Query  301   -------GSKKAGVIWHTQGSGKSLSMVFYAGKLVQ--NLNNPTIVVITDRNDLDDQLFD  351
                    GSKKAGV+WHTQGSGKS+SM  YAGKL+Q  ++NNPTIVV+TDRNDLD+QL+ 
Sbjct  290   LRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYT  349

Query  352   TFAGNSDLLRQPPKQAESCEHLKELLKV-ASGGIVFTTIQKFIPDNDSSVYELLSERDNI  410
             TF    DLL+Q P+QA + ++L+E+L    SGGI+FTT+QKF P ++      L+ RDNI
Sbjct  350   TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNI  409

Query  411   VVIADEAHRTQYGFNAKLREIKDENNQVVGQRIAYGFAKYMRDALPNATFIGFTGTPVEK  470
             VVI+DEAHR+QYG++A L   KD   +       YG+AK MRDALPNA+F+GFTGTPV  
Sbjct  410   VVISDEAHRSQYGLSATLD--KDGAYK-------YGYAKHMRDALPNASFMGFTGTPVSS  460

Query  471   QDANTPAVFGNYIDIYDIAQAVEDKVTVKIYYESRLAKVNLTEEGKKLIeefdreleevd  530
             +D +T AVFG+Y+ IYDI +AV+D  TV IYYESRLAK++L +E    +     +L E +
Sbjct  461   EDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDE  520

Query  531   ekdeakaakmkwakleaIVGNKERLATLAKDIVTHFEDRQKVFQGKAMIVAMSRRIAVDL  590
             E D+   +K  W++LE +VG+  R+  +A D+V HF  R+   +GKAMIVAMSR I V L
Sbjct  521   ETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRL  580

Query  591   YNEIIKLRPEWHSDDLDKGAIKVVMTSSSSDGPEMQKHHTTKEQRKMLAQRMKDENDPLK  650
             YN ++ LRPEWHS+D++KG IK++MT+S+SD  ++Q H   K+ +K L  R KD NDPLK
Sbjct  581   YNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLK  640

Query  651   IVIVRDMWLTGFDVPCLNTMYIDKPMKDHNLMQAIARVNRVFKDKPGGLIVDYIGIAPNL  710
             IVIVRDMWLTGFD PC +TMYIDKPM++HNLMQAIARVNRVFKDKPGGL+VDYIGIA +L
Sbjct  641   IVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANEL  700

Query  711   KKALSFYAESGGKGVPAETQARAVEIMLEKLEVVRQIL------HGFDYTSFFKAEVKDK  764
             K+AL  Y++S GKG  +     A  ++LEKL+V++ ++       GFDY++F     ++ 
Sbjct  701   KQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNP  756

Query  765   LSIILRAEDFILSTDDKKARFIKEVTLLSQAYALAKPDKATVTHAEEIAFFQAVKARLTK  824
               ++L A ++IL+ DD K R++  V  L++A +L      +     E+AF+ AVK  + K
Sbjct  757   QHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIK  816

Query  825   FETSGE--SGINYDSVIKNIVDSAIVSDEVVDIFDAAGIEKPELSILSDEFLMEIKGMKH  882
             + T++   S  + +S++  I+D+AIV+  V D+F  AG++KP++++LSDEFL E++ M +
Sbjct  817   LTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQ  876

Query  883   KNLAIELLKKILSDEIKVRSKYNLTKSKSLMEMLTLALKRYQNNLLTTAEIIEELIRIAK  942
             +NLA+ELL K+L+D I  R++ N+ + K   + L   L RY+N  + TA++IEELI++AK
Sbjct  877   RNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAK  936

Query  943   EIKNADRRGEELGLSEDELAFYDALETNDSAVKVLGDETLRTIARELADKVRKNATIDWT  1002
             E++ A  R++ LGL+ DE+AFYDAL  N+SAV+ LGDETL+ +A E++ ++RK++T+DW 
Sbjct  937   EFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQ  996

Query  1003  LKESVRAKLMVLVRRTLNKYGYPPDKQQRAVETVMKQAENLADIWVS  1049
             ++ESVRA+L +LVR+TL KY YPPDK   AVE ++KQAE +++ W +
Sbjct  997   VRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

131) PGA2_c07320 in NC_018286


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  769 bits (2910),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1064 (46%), Positives = 742/1064 (70%), Gaps = 42/1064 (3%)

Query  3     INEDLVEQAVLALMQELGWRLEDPMAIVPDGPQRRRGAYGEVVLPELLEDVARRLNPGIP  62
             ++ED +EQ  L+     GW + +   I PDG +  R ++ +V L  ++      LNP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63    EEALRSALKQVQVSETPSLIEENRRIHRLLVDGIDVEYRRPDGSIKGDKVRLIDFANPAK  122
                +   + ++  +E+P ++  N+ +H+LL+ G+ VEY+R D  I +  + L+DF +P +
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  123   NDFMVTNQFTVVESGHNRRPDIVAFVNGLPLVVVELKNAASENATIEDAFNQLQTYKQQI  182
             N F V NQ ++  + + RRPD++ ++NGLP+ V+ELK+++  NA I  AFNQLQTYK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  183   PSLFRTNAALITSDGLLARIGSLSAGEDRFMPWRTVTGAQDDFTPEGPKEMETLIRGVLH  242
             + LF  N AL+ SDG  ARIGSL+A+E+RF+PW+T++  +D   P    ++E ++ G ++
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDD--KPLLEHQLENVVNGFFN  238

Query  243   PERLLQLVRDFTVFGDKGDGVFKIIGGYHQFHGARKALASAIDAVSAD----------GD  292
              E LL+ +R F +F   G  ++K I++YHQFH+ R A+ ++I A ++           G 
Sbjct  239   RELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  293   RKVGVIWHTQGSGKSFLMAFFAGLLVRAPKLQNPTILVVTDRNDLDDQLYGTFSLCRDLI  352
             +K GV+WHTQGSGKS+ M  +AG L++ + ++NPTI+VVTDRNDLD+QLY TF   +DL+
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  353   RQTPEQIEDREDLRQKLD-RQSGGVIFSTLQKFSPMAGEEDFPMLSDRRNIIVLADEAHR  411
             +Q P+Q  +R++LR+ L  R+SGG+IF+T+QKF+P+ GE+  P L+ R NI+V++DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  412   SQYGFDAKLDRTTGARRYGYAHYLRQALPNASFAGFTGTPIEAADVNTPAVFGEYVDVYD  471
             SQYG+ A LD+  GA +YGYA  +R+ALPNASF GFTGTP+ + D +T AVFG+YV +YD
Sbjct  419   SQYGLSATLDKD-GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  472   ISRAVEDKATVPIYYESRLARVELEQDKLPEIDAAVEALFDDETLSEQEKAKSKWSSVER  531
             I  AV+D ATVPIYYESRLA+++L+++ L  + + V+ L +DE   ++EK+K+ WS +E+
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  532   LVGAPPRLEKVAHDIVAHFEDRVEAMAGKGMIVCMSRAICVDLYNRITELRPEWHSEDDK  591
             LVG+ PR+ +VA D+V HF  R  +M GK+MIV MSR ICV LYN +  LRPEWHSED  
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  592   EGVVKVVMTGSASDPLDWQKHIGSKMRRDLLAKRARDPEDQLKLVIVRDMWLTGFDAPSM  651
              G +K++MTGSASD  + Q HI +K  +  L  R +D +D LK+VIVRDMWLTGFDAP  
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  652   HTMYIDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYIGIGQNLKKALQNYTAT-DRDQTG  710
             HTMYIDKPMRGH LMQAIARVNRVFKDKPGGLVVDYIGI+++LK+AL+ YT + +++QT 
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  711   IDEEEAVATLQELVERCQDFFS------GFDYQAGIVGAPQERLKALAGAIEWALEKQka  764
             ID  +A A L E ++  ++ F+      GFDY +++   PQ+    L +A +  L  + +
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYILGLDDG  773

Query  765   radkatdekakkaeLNYYADLVANLSKAFALASASDYAQSVKEEVGFFQAVRAALSK-SS  823
             +               Y+ D+V  L+KA +L S+ D A++++ E++F+ AV+ A+ K ++
Sbjct  774   KK-------------RYF-DVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTT  819

Query  824   PKTGMSKREKEFAMGQlisdaiadasiidvlaaaGMRTPEISVLSEEFLSEIQNMEHKNL  883
                  S+ EK+  +++++ +AI  +++ DV+A AG+  P+I++LS+EFL E+++M ++NL
Sbjct  820   TDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNL  879

Query  884   ALEALRKLLAGEIKARGQRNVVEAKAFSERLEAAVARYHANAITSLEMIQELIDMAKDMK  943
             A+E L KLL + I AR + NVV+ K +S+RL A + RY+  AI + ++I+ELI+MAK+ +
Sbjct  880   AVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQ  939

Query  944   ASVQRgedlglgeeelAFYDALAQNQSAVEMLGNEELRKIAHVLVEQLQQNVTVDWHLKE  1003
             A++ R++ LGL  +E+AFYDALA+N+SAV  LG+E L+K+A  +  QL+++ TVDW+++E
Sbjct  940   AAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRE  999

Query  1004  SARAKLRVLVRRILKKFGYPPDLAPVAINTVLSQAETLLK-WGA  1046
             S RA+LR+LVR+ L K+ YPPD A  A++ +L QAE + + W A
Sbjct  1000  SVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

132) XOO_3254 in NC_007705


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  767 bits (2903),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1070 (49%), Positives = 757/1070 (71%), Gaps = 42/1070 (3%)

Query  4     LSEAAVEQALLEQLRRLGYAVVSDNTTGPDGSAPERESHDVVIlrrrleeaalllNPQLP  63
             LSE  +EQ  L  +   G  V+ +   +PDG  P R S + V+LR  +      LNP+LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    PEAREDAIRKLTQNELPNLLEENRRIHALLTEGVDVEYYADDGVLTAGKVWLLDFDRPEN  123
             +   ++ I ++T+ E P+++  N+ +H LL  GV VEY  DD V+    + L+DF++PEN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NDWLAVQQFVVISGQARRRPDVVLFVNGLPLAVIELKAPGSAGAHLVGAFNQLQNYKQQI  183
             N    V+Q  + + +  RRPDV+ ++NGLP+AVIELK+P+   A++ +AFNQLQ YK++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PALFHTNAVLVTSDGIASRVGSLSADLERFMPWRTTDGKQVLPNGQPELPTLIEGVFAPQ  243
             + LF  N  LV SDG  +R+GSL+AD ERF+PW+T    +  P  + +L  +++G F  +
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  244   RFLELLRWFTAFGETGGGLVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYGSASVK  303
              +L+ +R F  F   G  L+K IA+YHQFHAV +AV++TI AS        +K+ +   +
Sbjct  241   LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS-------TGKFLPLRSN  293

Query  304   AQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDLDDQLFGTFS  363
              +P G ++AGV+WHTQGSGKS+ M  YAG+L+Q++ M NPT+VV+TDRNDLD+QL+ TF 
Sbjct  294   IKP-GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFC  352

Query  364   MCKALLRQTPVQADSREDLARLLD-RASGGVIFTTLQKFGEVDA-----PLTARRNVVVI  417
               K LL+Q P QA +R++L  +L  R SGG+IFTT+QKF+ +D+     +L  R N+VVI
Sbjct  353   QAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVI  412

Query  418   ADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPIEATDVNTPALFGH  477
             +DEAHRSQYGL A LD K G   YG+AK MRDALPNASF+GFTGTP+ + D +T A+FG+
Sbjct  413   SDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  478   YIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFEWEGTDEKEKLKGR  537
             Y+ +YDI  AV+DGATVPIYYESRLA+++L+++E   L ++V+ L E E TD+KEK KG 
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  538   AAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYNEIVKLRPHW  597
              + +E+LVGS+ R+  VA DLV HF  R A+++GKAM V MSR+ICV LYN +V LRP+W
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  598   HSDDDTLGAVKIVMTGAASDPPQWQQHIGNkarrdalarrakdpadpLKLVIVRDMWLTG  657
             HS+D   G +KI+MTG+ASD  + Q HI NK  +  L  R KD  DPLK+VIVRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  658   FDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALAQYS-PQ  716
             FDAP  HTMY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK AL  Y+ ++
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  717   DKQNTGIDEAQAIAVMREKYEVVRDMY------HGFDYLTALNGTPQQRLTMMAGAIEWI  770
             +K +T ID  +A+AV+ EK +V+++M+       GFDY +A++  PQ+   ++ +A + I
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---VLLDAANYI  767

Query  771   LDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVGFFQAIREA  830
             L+ ++              +++RY D VLAL+ A +L S+ DEA +++ E++F+ A++ A
Sbjct  768   LGLDD--------------GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVA  813

Query  831   LVK-SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISILSDEFLAEVQR  889
             ++K ++T+  ++  E++  + +I+  A+V+T + D++  AG++ P+I++LSDEFL EV+ 
Sbjct  814   IIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVRE  873

Query  890   MDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEVLQELIC  949
             M ++NLA+E L KL+NDGI++R++ N+V+ K +S+RL   + RY+  AI TA+V++ELI 
Sbjct  874   MPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQ  933

Query  950   IAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHELLVSLKGSASV  1009
             +AK+++AA AR++  GL+ DE+AFYDALAEN+SAV+ +GD++LK +A E+   L+ S++V
Sbjct  934   MAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTV  993

Query  1010  DWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAGWSA  1059
             DW  R+S RAR+R+LV++ L KY YPPD    AV  +L+QAE +S +W+A
Sbjct  994   DWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

133) hsdR1 in NC_010163


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  767 bits (2901),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1024 (47%), Positives = 729/1024 (72%), Gaps = 33/1024 (3%)

Query  8     ESDVEEATLEWFQELGYQTEFGPNIAPEGPYPERASYTDVILIERLKESLFRLNKSLPKS  67
             E D+E+ +L WF   G +   GP+IAP+G  P R S+ DV+L   ++  L  LN  LP S
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  68    AIEDAIRQITIPKQIALIENNRTFHKMITDGVDVSYHDQTGRLVHSQVRIFDFNEPTNND  127
              +++ I +IT P    ++ +N++FH ++  GV V Y  + ++++H    + DFN+P NN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-RDDKVIHDTALLMDFNHPENNR  122

Query  128   YLVVNQFTVVESRVEKRPDvvvfvnglplvvfELKTASDENVSIKSAFRQVKNYQQSISS  187
             + VVNQ ++  ++  +RPDV+ ++NGLP+ V+ELK++SD N  I +AF Q++ Y++ IS 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  188   LFVYNSFNVISDGLHAKAGTITSDEDRFMTWRTTDGKEIAPTTIPQLETLIKGMFDKKRF  247
             LF+ N   VISDG +A+ G++T+DE+RF+ W+T    +  P    QLE +++G F++  +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  248   LDIIKQYVLFQKHESGYIKILAGYHQYHAVNTALEKTYEATSA----------HGDRRIG  297
             LD I+ ++LF+ +    IK +A+YHQ+HAV  A++ T  A+++           G ++ G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  298   VIWHTQGSGKSLSMVFYAGKLVISQELSNPTIVIITDRNDLDDQLFLTFSKSSDLLRSIP  357
             V+WHTQGSGKS+SM  YAGKL+   E++NPTIV++TDRNDLD+QL+ TF ++ DLL+  P
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  358   DQAASREHLKELLNGRDSGGIIFTTIQKFSP-DDNGNVTALTNRKNVIVLADEAHRSQYG  416
             +QA++R++L+E+L +R+SGGIIFTT+QKF+P D++    AL  R N++V++DEAHRSQYG
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYG  422

Query  417   FSAKVVKSQDEAFEKYGYAKYLRDSLPNASYIGFTGTPIETTDKNTRAVFGDYIDIYDMS  476
             +SA + K  D A+ KYGYAK +RD+LPNAS++GFTGTP+ + DK+TRAVFGDY+ IYD+ 
Sbjct  423   LSATLDK--DGAY-KYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  477   RAVEDKTTVKIFYESRIAQIDFT-EEYDLIDENYDEITEYQEETQKEGLKRKWARLEAIV  535
              AV+D +TV I+YESR+A++D+  EE + +  + D++ E +E  QKE  K  W+RLE +V
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  536   GSESRIKTVAKDIVEHFEKRQATMETPVGKAMIVAMSRRIAVELYEAIVKLRPEWHSDDV  595
             GSE+RIK VA D+V HF  R+ATM+   GKAMIVAMSR I V LY+A+V LRPEWHS+DV
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMN---GKAMIVAMSRDICVRLYNALVALRPEWHSEDV  596

Query  596   LKGKIKVVMTGSSSDPESWQKHIGTKQTRETLSERMKDNNDELELVIVRDMWLTGFDVPS  655
              KG IK++MTGS+SD E  Q HI  KQT+  L  R KD ND L +VIVRDMWLTGFD P 
Sbjct  597   EKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPC  656

Query  656   MHTMYVDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIADRLKKALMQYTDN-DREQV  714
              HTMY+DKPM+GHNLMQAIARVNRVFK+K GGLVVDYIGIA+ LK+AL  YTD+ ++ Q 
Sbjct  657   CHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQT  716

Query  715   GVDTALAVSVMLEKLDIVRDILHQH------DYSKYFGDRYSEKLQVIMETIDFVIGLRE  768
              +D+  A +V+LEKLD++++++ +       DYS +  +  ++  +V++++ ++++GL +
Sbjct  717   TIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQ--HVLLDAANYILGLDD  772

Query  769   ERKNDFLKFVSELSKAYSLCSTTEEAEKHNVEIGFFKSVRAGIIKLSTDTSKKKSVDQLD  828
              +K  ++  V  L+KA SLCST +EA   + E++F+ +V+ +IIKL+T T KK S  + +
Sbjct  773   GKKR-YFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTT-TDKKFSQSEKN  830

Query  829   SELNQLISKSLKSDKVIDIMAEIGLSKPDISILSDEFLEEFNKMNHKNVAIELLKRLIKG  888
             S L++++ +++ +  V D+ A  GL KP+I++LSDEFLEE   M ++N+A+ELL +L+++
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  889   KLKMIARKTIVQSRQFSELLEDALAKYQARLIDSTVVIQELIELAKDITKAAESGKESGL  948
              +   + + +VQ +++S+ L   L +Y+ R I+++ VI+ELI++AK++  A   +   GL
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  949   TEDEFAFYEALSSNMTAKEVMGTDILKEIAKELTKKIKSSTTIDWNIRDSVRAKIRFEI-  1007
               DE+AFY+AL+ N +A   +G + LK +A E+T +++ STT+DW++R+SVRA++R+ + 
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1008  KVLL  1011
             K LL
Sbjct  1011  KTLL  1014

134) Veis_3013 in NC_008786


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  766 bits (2898),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1050 (47%), Positives = 739/1050 (71%), Gaps = 48/1050 (4%)

Query  19    GLGYRIEQEKDIGPDGPRPERESHDEVVLKKRFADAVARLNPGLPLEARQVAMRRLMQSE  78
             G G  + +  DI+PDG  P R S ++V L+  F   +  LNP LP    +  + R+ ++E
Sbjct  17    GQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPE  76

Query  79    LPTLLEENRRLHKLMTDGVEVEYYAEDGTLTTGTVALIDFKRPEQNDWLAVSQFVVIAGQ  138
              P ++  N+ +H L+  GV VEY   D+ +  +T  L+DF++PE+N    V+Q  + + +
Sbjct  77    SPDIVVSNKAFHHLLLSGVPVEY-KRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTK  135

Query  139   YQRRPDvvvfvnglplvvIELKALG--NATLLAAFQQLQNYKQQIAALFNTNALLVTSDG  196
               RRPDV+ ++NGLP+ VIELK+ +  NA + AAF+QLQ YK++I+ LF  N  LV SDG
Sbjct  136   QLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDG  195

Query  197   VHARVGSLSADQERFMPWRTTDGTAITPKGKPELPTLIEGVFAHRRLLDLLRHFTVFDET  256
              +AR+GSL+AD+ERF+PW+T       P    +L  +++G F +  LLD +R F +F+  
Sbjct  196   YNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESD  255

Query  257   GSGLVKIIAGYHQFHAVMRAVDSTLRASSQWQGVQEDPRDYGWSSVKTQAK-GDRRAGVI  315
             G  L+K IA+YHQFHAV  AV++T+ AS+               +++++ K G ++AGV+
Sbjct  256   GKRLIKKIAAYHQFHAVREAVNATIVASTG-----------KFLPLRSNIKPGSKKAGVV  304

Query  316   WHTQGSGKSLLMVFYARQLAQHVAMANPTLVVLTDRNDLDDQLFATFSRCRDFIRQTPVQ  375
             WHTQGSGKS+ M  YA +L Q+  M NPT+VV+TDRNDLD+QL++TF + +D+++Q P Q
Sbjct  305   WHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQ  364

Query  376   ANSREDLQKLLM-RASGGVIFTTLQKFA-----ESSQPLTERHNVVVIADEAHRSQYGFR  429
             A++R++L+ +L  R SGG+IFTT+QKFA     ++  +L  R+N+VVI+DEAHRSQYG+ 
Sbjct  365   ASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLS  424

Query  430   AKLDARTGGVSYGFAKYLRDALPHASFIGFTGTPIEASGVNTRAVFGNYIDIYDISRAVE  489
             A LD + G+  YG+AK +RDALP+ASF+GFTGTP+ + + +TRAVFG+Y+ IYDI  AV+
Sbjct  425   ATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVD  483

Query  490   DGATVLIYYESRLARIELDGDERHKIDAEVDAMIEDDSEAEQERFKKEWSTVEALVGSDK  549
             DGATV IYYESRLA+++L+ +E + + ++VD ++ED+   ++E+ K +WS +E LVGS+ 
Sbjct  484   DGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEP  543

Query  550   RLALIAQDMVTHFEARMAALDGKAMAVCMSRHVCVRLYEEIVKLRPGWHSADDKAGALKI  609
             R+  +A D+V HF AR A+++GKAM V MSR++CVRLY+ +V LRP WHS D   G +KI
Sbjct  544   RIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKI  603

Query  610   VMTGAASDPAEWQQHVGNKARRDVLAKRARDIRDPLKLVIVCDMWLTGFDAPCMHTMYVD  669
             +MTG+ASD  + Q H+ NK  +  L  R +D+ DPLK+VIV DMWLTGFDAPC HTMY+D
Sbjct  604   IMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYID  663

Query  670   KPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAHYLKSALRQYSKS-DRKNTGIDESKA  728
             KPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA+ LK AL+ Y+ S ++ +T ID   A
Sbjct  664   KPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDA  723

Query  729   VAMMMEKYEIVRNMY------HGFDYT-LDGTAQERLVMMAGAIEWILDMQQKSAARESS  781
              A+++EK ++++ M+       GFDY+ ++  +Q+ L+   +A + IL+++         
Sbjct  724   FAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLL---DAANYILGLD---------  771

Query  782   REGKKTAHRRYQDAVLALSKAFSLVSASDEARTIREEVGFFQAIRDALVKSSGAMGVMGQ  841
              +GKK    RY D VLAL+KA SL S+ DEA+ ++ E++F+ A++ A++K + +    +Q
Sbjct  772   -DGKK----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQ  826

Query  842   -ERELAIRQIVSRAVISTEIVDILAAVGIKSPDISILSDQFLTEIAQMERKNLALEALRK  900
              E++  + +I+  A+++T + D++A  G+  P+I++LSD+FL E+ +M ++NLA+E L K
Sbjct  827   SEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEK  886

Query  901   LINDDIRSRSKANVVQSKAFSERLEEAMARYHANAITTAEVLQELITLAKDIRAERQRGE  960
             L+ND+I++R++ NVVQ K +S+RL   + RY+  AI TA+V++ELI +AK+++A   R++
Sbjct  887   LLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDD  946

Query  961   ESGLSDEEIAFYDALAENDSALQMMGDDKLRLIAHELLVSLRNNISVDWAHRESARAQMR  1020
               GL+ +EIAFYDALAEN+SA++ +GD+ L+ +A E+   LR++ +VDW  RES RA++R
Sbjct  947   ALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLR  1006

Query  1021  MLVKRILRKYGYPPDLQDEAVRTVLRQAEV  1050
             +LV++ L KY YPPD   +AV  +L+QAEV
Sbjct  1007  ILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

135) Ngar_c29150 in NC_018719


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  765 bits (2896),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1053 (48%), Positives = 737/1053 (70%), Gaps = 35/1053 (3%)

Query  5     ISEADVEENVLAILESMGYKIIRGDNEDCLPGGSSALRADYKDVVLVDRLTDSLRKINPS  64
             +SE D+E+  L+ + + G  +++G +    P+G ++LR  + DV L   +   L  +NP 
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIA--PDGKNPLRISFHDVFLRPIFRKQLETLNPH  59

Query  65    APIDALDQAIKQVLRSESQKLIANNESFHKMLVDGIDIPVQTLEGETYKKIWLFDFEDPE  124
              P   +D+ I ++ R+ES  ++ +N +FH +L+ G+ +  +  +        L DF++PE
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPE  119

Query  125   NNEFLAVNQFTVVENNIERRPDVILFVNGIPLLVIELKNLADENATIWTAYDQLQTYKEQ  184
             NN F  VNQ ++   +  RRPDVI ++NG+P+ VIELK+ +D NA IW+A++QLQTYK++
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  185   LPSLFKYNEILVISDGIEARAGTLTSERERFAQWKTIDGGAPRKGLT-EIEVLIRGMCNK  243
             ++ LF  NE LVISDG +AR G+LT++ ERF  WKTI     +  L  ++E ++ G  N+
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNR  239

Query  244   QRFLDIVRNFIVFEKD-KSVSKKLAAYHQYWAVNKALESTI------------KARKGNK  290
             + +LD +R FI+FE D K + KK+AAYHQ+ AV  A+++TI            + + G+K
Sbjct  240   ELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  291   KAGIVWHTQGSGKSLTMVFYTGKLVR--ELDNPTVVVLTDRNDLDDQLFGTFSRCQDIIR  348
             KAG+VWHTQGSGKS++M  Y+GKL++  E++NPT+VV+TDRNDLD+QL+ TF + +D+++
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  349   QEPQQANSRKELQDLLKV-SSGGIVFTTIQKFLPEEDNREKYPVLSERDNIVVIADEAHR  407
             QEPQQA++R +L+++L    SGGI+FTT+QKF P ++++   P L+ RDNIVVI+DEAHR
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAH-PALNLRDNIVVISDEAHR  418

Query  408   SQYGFAAKILNKDDKTLITYGYAKYLRDALPNASFIGFTGTPIEKADRSTPAVFGKYVDT  467
             SQYG++A  L+KD+     YGYAK +RDALPNASF+GFTGTP+   D+ T AVFG YV  
Sbjct  419   SQYGLSAT-LDKDGA--YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSI  475

Query  468   YDIEQAVNDGATVRIYYESRLAKLELKPEERPKIDSefeevtegeevegkekLKSKWARV  527
             YDI++AV+DGATV IYYESRLAKL+L+ EE   + S+ +++ E+EE + KEK K+ W+R+
Sbjct  476   YDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRL  535

Query  528   EKVAGAPMRIKRIAKDIVDHFEKRTSVLEGKGMIVCMSRRICVELYNEIVELRPEWKNSD  587
             EK+ G+  RIK++A D+V HF  R + ++GK+MIV MSR ICV LYN +V LRPEW + D
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  588   DEKGAIKVVMTGSASDPKEWQEHIRNKIRRKRIGDNFKDPKHELRLIIVRDMFLTGYDAP  647
              EKG IK++MTGSASD  + Q HI NK  +KR+   FKD ++ L+++IVRDM LTG+DAP
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  648   SLHTMYLDKPMKGHTLMQAIARVNRVYPGKEGGLIVDYMGVGAELKKALMDYTASGGKGK  707
               HTMY+DKPM+GH LMQAIARVNRV+ +K GGL+VDY+G++ ELK+AL  YT S GKG+
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  708   PAFDQekavmmmvekyevvkDMF------HGFNYRKFFELKPSERISFIPQAMEHILKEP  761
              ++D   A  +++EK +V+ +MF       GF+Y  F     ++    + +A + IL   
Sbjct  716   TTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLD  771

Query  762   GKKERYAREVTALLKAFSLAVPHDRAMKIKEEVGLFQAIKSAIAKTTETGKE-SQEEKFD  820
             + K RY   V AL KA SL    D A  ++ E++++ A+K AI K T T+K  SQ EK +
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEK-N  830

Query  821   SAIKQILSKAVISDRIIDIFEAAGIQKPELSILSDGFLAEVKDMPQKNLAFEALKKLLND  880
             S + +IL +A+++  + D+F  AG++KP++++LSD FL EV++MPQ+NLA E L KLLND
Sbjct  831   SLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLND  890

Query  881   EIRFMSKRNLVQAKSFMEMLDKTIKKYTNRNVEAAQVIEELIELAKKVRAEKNRAKEQNM  940
              I+  ++ N+VQ K + + L   + +Y NR +E+AQVIEELI++AK  +A   R     +
Sbjct  891   GIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGL  950

Query  941   SEDELAFYDALEVNDSAVKILGDETLRKIAVELTQMIRNSVTIDWTQRESVQAAIRLNVK  1000
             + DE+AFYDAL  N+SAV+ LGDETL+K+A+E+T  +R+S T+DW  RESV+A +R+ V+
Sbjct  951   NPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVR  1010

Query  1001  KILRKYGYPPDKEKKATETVLRQAELVAKNWVS  1033
             K L KY YPPDK   A E +L+QAE+V+++W +
Sbjct  1011  KTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

136) hsdR in NC_015634


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  764 bits (2890),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/1061 (48%), Positives = 732/1061 (69%), Gaps = 63/1061 (5%)

Query  35    GYDYVFGPDISCDGERPERKDYRTVILEDRVKDALFKHNRHLPQEAIEEAFRQIIAFNSP  94
             G + + GPDI+ DG  P R  ++ V+L    +  L   N HLP   ++E + +I   +SP
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  95    SLEENNRHFHKLITEGIDVSFHQDGLSRSMKAFLIDFEEPAKNDFLVVNQFTVVE-KEER  153
              +  +N+ FH L+  G+ V + +D+      A+L+DF++P +N F VVNQ ++   K+ R
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLR  138

Query  154   RPDLIIFINGIPFVVIELKSASDENVSIDNAYAQIQTYKRDIPSLFYYNAFCILSDGINA  213
             RPD+I +ING+P+ VIELKS+SD N  I  A+ Q+QTYK +I+ LF  N   ++SDG NA
Sbjct  139   RPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNA  198

Query  214   KAGTITASQERFMNWRTVDGENIEPLEVPQYEVLLRGMLAKDRLIDIIENFILFQESKEE  273
             + G++TA +ERF+ W+T+  E+  PL   Q E ++ G + ++ L+D I  FILF      
Sbjct  199   RIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILF------  252

Query  274   ERDENGKKIGERKTIAKILAAYHQYFAVKKAVEKTKIATSEN----------GDRKIGVI  323
               + +GK++       K +AAYHQ+ AV+ AV+ T +A++ +          G +K GV+
Sbjct  253   --ESDGKRL------IKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVV  304

Query  324   WHTQGSGKSFSMVFYTAQLVKQ--LNNPTIVVITDRNDLDDQLFSTFSKSKDILRQTPKQ  381
             WHTQGSGKS+SM  Y+++L++Q  +NNPTIVV+TDRNDLD+QL++TF ++KD+L+Q P+Q
Sbjct  305   WHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQ  364

Query  382   ADVRKLSEEQKKQQANEKSKEINGLYDLLNDRESGGIIFTTIQKFKPEEGEM--PVLTDR  439
             A  R                  + L ++L  RESGGIIFTT+QKF P +GE   P L  R
Sbjct  365   ASNR------------------DQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLR  406

Query  440   KNVIVIADEAHRSQYGFSAKTDTKTGEVKYGYAKYLRDALPNASFIGFTGTPIELEDKST  499
              N++VI+DEAHRSQYG+SA  D K G  KYGYAK +RDALPNASF+GFTGTP+  EDK T
Sbjct  407   DNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDT  465

Query  500   PAVFGNYIDIYDMTRAVEDKATVKIYYENRIIRLEANEEELAKIDeefeeitedqeeSVR  559
              AVFG+Y+ IYD+  AV+D ATV IYYE+R+ +L+ N+EEL  +  + +++ ED+E   +
Sbjct  466   RAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQK  525

Query  560   EKYKSKWSRLEAIVGSPNRIKQLAKDIVNHYEEKAKAIDGKAMIVCMSRRICVALYNEIV  619
             EK K+ WSRLE +VGS  RIKQ+A D+V+H+  +  +++GKAMIV MSR ICV LYN +V
Sbjct  526   EKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALV  585

Query  620   KLRPDWHSDDDDKGKIKVVMTGSAGDDDFLQPHIGGKKRRDLLAKRMKDNSDELKIVIVR  679
              LRP+WHS+D +KG IK++MTGSA+D + LQPHI  K+ +  L  R KD +D LKIVIVR
Sbjct  586   ALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  680   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKSGGVVVDYIGILESLKKALN  739
             DMWLTGFD P  HTMYIDKPM+GHNLMQAIARVNRVFKDK+GG+VVDYIGI + LK+AL+
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  740   QYTES-DKKTTGIDTSAAVAVMKEKLEILQDMM------HGFDYSAYMGSSQAGRIRAIT  792
              YT+S +K  T ID+  A AV+ EKL+++++M        GFDYSA+  ++Q    + + 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLL  761

Query  793   GGMNVIFGKSEKEQKEFKKTATELAKAHSLCAATDEGKAAALEVSYFKAVKASLNKLQEK  852
             ++ N I+G  +  ++ F      L KA SLC++ DE+K+   E++++ AVK ++ KL   
Sbjct  762   DAANYILGLDDGKKRYF-DVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTT  820

Query  853   QPKRKTKKEIEARVNQLLERSIISEEVVDVFEVMGLKHPDVSILSEEFLEEVRSYEYKNL  912
             + K+ ++ E ++ ++++L+ +I++  V DVF + GL  P++++LS+EFLEEVR    +NL
Sbjct  821   D-KKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNL  879

Query  913   AVEMLKKLLEGNIKTMERRNLVKSQKYSEKLKQSLNKYKNQAITNAEVIEELIQMAkdmk  972
             AVE+L KLL++ I +    N+V+ +KYS++L+  L +Y+N+AI  A+VIEELIQMAK+ +
Sbjct  880   AVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQ  939

Query  973   kereeekdLGLNEDEIAFYDALT-SESIVKELMEDEVLRKIANELTQAIRRNMTIDWHVR  1031
                  +  LGLN DEIAFYDAL+ +ES V+EL  DE L+K+A E+T  +R++ T+DW+VR
Sbjct  940   AAMARDDALGLNPDEIAFYDALAENESAVREL-GDETLKKLAIEVTAQLRKSTTVDWQVR  998

Query  1032  KSARAGMRRIIKRLLKKYDYPPEQAKKALDTVMRQAELMAE  1072
              S RA +R ++++ L KY YPP++A  A++ +++QAE++++
Sbjct  999   ESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

137) hsdR in NC_012796


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  761 bits (2880),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1064 (49%), Positives = 753/1064 (71%), Gaps = 43/1064 (4%)

Query  4     ISEADVEGVLLETLGSLGYAATSDLQIGPDGHAPEREAYSDVFLQKRLEAAVEALNPHIP  63
             +SE D+E + L  +++ G     + +I+PDG  P R ++ DVFL+  +   +E+LNPH+P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    AEARHDAIRALIATEFPNLTEENRRLHRMMVEGVDVEFPRDDGSIAGDKVRLIDFDTPDN  123
             A   ++ I  +   E P++   N+ +H++++ GV VE+ RDD  I +  + L+DF+ P+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NDWLAVNQFTVIEGKINRRPDVVVFVNGLPLGVIELKNPGTENADLEAAFNQLQTYKTQV  183
             N    VNQ ++   K  RRPDV+ ++NGLP++VIELK+P+  NAD+ AAFNQLQTYK ++
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   TSLFRTNAVLVTSDGLQARIGSLTANQERFMPWRTTDGKEVAKKGL--PELHVLIEGVFE  241
             + LF  N  LV SDG +ARIGSLTA++ERF+PW+T    +   K L   +L+ +++G F+
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNED--DKPLLEHQLENVVNGFFN  238

Query  242   KRRFLDLIRDFTVFGETGSGIAKIIAGYHQYHAVRHAVAHTVKAAAPK----------GD  291
             +  +LD IR F +F   G  + K IA+YHQ+HAVR+AV  T+ A++ K          G 
Sbjct  239   RELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  292   RRAGVIWHTQGSGKSLLMAFYAGQLVRCPELENPTIVVITDRNDLDDQLFNTFSMCRDLI  351
             ++AGV+WHTQGSGKS+ M  YAG+L++ +E++NPTIVV+TDRNDLD+QL+ TF   +DL+
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  352   RQTPIQATNREDLRKALN-RASGGVIFTTIQKFTPEKGDSEYPLLTDRRNVVVIADEAHR  410
             +Q P QA+NR++LR  L  R SGG+IFTT+QKF+P  G+   P L  R N+VVI+DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  411   SQYGFKAKVAQKTGEIAYGFAKYLRDGLPNASFIGFTGTPIEKDDVNTPAVFGHYIDIYD  470
             SQYG+ A + +K G   YG+AK +RD+LPNASF+GFTGTP+  +D +T AVFG+Y+ IYD
Sbjct  419   SQYGLSATL-DKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  471   ISRAVEDGATVPLYYESRLARIELSAeekpkideeieelteddAVSEQEALKRKWATVEA  530
             I  AV+DGATVP+YYESRLA+++L+ EE   +  ++++L ED+   ++E  K  W+ +E 
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEK  537

Query  531   LVGAEKRLKLIAQDLVRHFEDRVAAMDGKAMVVCMSRRICVALYNEIVALRPAWHSDDDN  590
             LVG+E R+K +A DLV+HF  R A+M+GKAM+V MSR ICV LYN +VALRP WHS+D +
Sbjct  538   LVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVE  597

Query  591   EGVVKVVMTGSASDPADWQPHVGNkarrellakrakapkDTLKLVLVRDMWLTGFDAPSM  650
              G +K++MTGSASD  + QPH+ NK  +  L  R K  +D LK+V+VRDMWLTGFDAP  
Sbjct  598   KGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCC  657

Query  651   HTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQSLKNALGQYSAS-DRSQAG  709
             HTMY+DKPM+GH LMQAIARVNRVF+DKP+GLVVDYIGI++ LK+AL  Y+ S +++Q+ 
Sbjct  658   HTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTT  717

Query  710   IDEGKAVAVMMEKFEIVTAMF------HGFDYQRAMTGTAHDRLMVMAEALDWILEQQHK  763
             ID   A AV++EK++++ +MF       GFDY        H    V+ +A + IL     
Sbjct  718   IDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYIL-----  768

Query  764   AAEKETDDGKKKEAHRRFQDavlalskafalaaasdearsIRDEVAFFQTIRAALtktgi  823
                   DDGKK     R+ D VLAL+KA +L ++ DEA++++ E+AF+ +++ A+ K   
Sbjct  769   ----GLDDGKK-----RYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTT  819

Query  824   gggk-ttAEREFAVQQLINRAVASTEIVDILAAAGLNTPDISILSDEFLVEVQQMekknl  882
              + K + +E++  + ++++ A+ +T + D++A AGL+ P+I++LSDEFL EV++M ++NL
Sbjct  820   TDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNL  879

Query  883   alealkkllnGEIHSRTRTNVVETKKFSERLEKAIARYHTNAVSTVEVIQELINLAKDIR  942
             A+E L KLLN+ IH+RT  NVV+ KK+S+RL   + RY+  A+ T +VI+ELI++AK+++
Sbjct  880   AVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQ  939

Query  943   EARLRGEALGLSQDEIAFYDALAENQSAVDVMGDASLRVIAHELLTSLKGSITVDWAHRE  1002
              A  R++ALGL+ DEIAFYDALAEN+SAV  +GD +L+ +A E+ + L+ S TVDW  RE
Sbjct  940   AAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRE  999

Query  1003  SARARMRVLVKRILKRHGYPPDLQDAAIQVVLQQAEALSAQWAA  1046
             S RAR+R+LV++ L +  YPPD    A++++L+QAE +S  W+A
Sbjct  1000  SVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

138) Dtpsy_1863 in NC_011992


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  757 bits (2863),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 455/847 (54%), Positives = 628/847 (75%), Gaps = 57/847 (6%)

Query  1    MTEDQLEKETLGWLADVGYSLHNGLDIAQDGINPQRADYRQVVLSFRLREAIQRLNPHIP  60
            ++ED+LE+ +LGW+A+ G  + +G DIA DG NP R  +++V L   +R  ++ LNPH+P
Sbjct  2    LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  61   TAAREDALHRVLDLGIPSLLSANRAFHKLLVGGVPVQYQKEGETRGDFVRLVDWSEASRN  120
            ++  ++ + R+     P ++ +N+AFH LL++GVPV+Y++++    D   L+D +++  N
Sbjct  62   ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  121  EFWAVNQFTIKGPHHTRRPDIILFVNGLPLVLLELKNPADQAADIWKAYDQIQTYKEHIP  180
             F  VNQ +I G  + RRPD+I ++NGLP+ ++ELK+P+D  ADIW A++Q+QTYK++I+
Sbjct  122  RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  181  DVFQYNEVLVISDGTEARLGSLSANAERFMQWRTIDGVNLDPLGEFNELETLVRGALAPQ  240
            D+F  NE LVISDG +AR+GSL+A+ ERF+ W+TI   +  PL E ++LE +V G +  +
Sbjct  182  DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLE-HQLENVVNGFFNRE  240

Query  241  YLLDYLRYFVLFEDDGS-LVKKIAGYHQFHAVRSAIAHVVAAS-------RPDSAANQRG  292
             LLDY+RYF+LFE DG  L+KKIA+YHQFHAVR A+   + AS       R++  +  + 
Sbjct  241  LLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK-  299

Query  293  KGGVVWHTQGSGKSITMTCFAARVMQEPAMANPTIVVITDRNDLDGQLFGVFSLAQDLLR  352
            K+GVVWHTQGSGKSI+M C+A++++Q++ M NPTIVV+TDRNDLDGQL+  F  A+DLL+
Sbjct  300  KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  353  EQPAQASTRQQLRQLLSNRPSGGIVFATIQKFMPGEDEDMFPVLSERHNIVVIADEAHRT  412
            ++P QAS R+QLR++L+ R SGGI+F+T+QKF P ++E+  P L+ R+NIVVI+DEAHR+
Sbjct  360  QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRS  419

Query  413  QYGFEAKLKTIKNKGASAAKALVLADGETSGAAVTADFAEPEYLTKYQVGYAQHLRDALP  472
            QYG+ A L                   +  GA              Y+ GYA+H+RDALP
Sbjct  420  QYGLSATL-------------------DKDGA--------------YKYGYAKHMRDALP  446

Query  473  HATFVAFTGTPVSSTDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLRLKEEDL  532
            +A+F++FTGTPVSS D+DTRAVFGDY+S+YD+Q+A +DGATV+IYYESRLAKL L++E+L
Sbjct  447  NASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEEL  506

Query  533  SFLddevdelaedeeeSTQAQLKSRWAALEKVVGATPRVASVAADLVAHFEERNKTQDGK  592
              L  +VD+L EDEE   + + K+ W+ LEK+VG+ PR+  VAADLV HF  RN T +GK
Sbjct  507  EALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGK  566

Query  593  AMVVAMSRDICVHLYNEIVKLRPDWHDSDPEKGAIKIVMTGSASDKALLRPHIYSAQVKK  652
            AM+VAMSRDICV+LYN +V LRP+WH  D EKG IKI+MTGSASDK  L+PHIY+ Q KK
Sbjct  567  AMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKK  626

Query  653  RLEKRFKDPTDPLRLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLMQAIARVNRVFKDKQ  712
            RLE RFKD  DPL++VIVRDMWLTGFDAPC HTMY+DKPM+GHNLMQAIARVNRVFKDK 
Sbjct  627  RLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKP  686

Query  713  GGLVVDYIGIGNELKAAMKEYTASQGRGKPTVDAHEALSVLLEKMDVLRAML------HG  766
            GGLVVDYIGI+NELK A+K YT S+G+G+ T+DA++A++VLLEK+DV+++M+       G
Sbjct  687  GGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPG  746

Query  767  YDYSGFLTGGHKTLAGAANHVLGIKSEGKDSKRDGKKRFADSALAMSKAFSLCCTLDEAK  826
            +DYS+F    +  L +AAN +LG+         DGKKR+ D  LA++KA SLC TLDEAK
Sbjct  747  FDYSAFENNPQHVLLDAANYILGLD--------DGKKRYFDVVLALNKAWSLCSTLDEAK  798

Query  827  ALREEVP  833
            +L+ E++
Sbjct  799  PLQKELA  805

139) TREAZ_2426 in NC_015577


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  757 bits (2864),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1104 (44%), Positives = 746/1104 (68%), Gaps = 83/1104 (7%)

Query  4     LTESDIEQYALELLEAQGYDCLYGPDIAPGGHNPLRKSFDEVLLFDMLEAAVARINPNLS  63
             L+E D+EQ +L  + +QG + L GPDIAP+G NPLR SF++V+L  ++   +  +NP+L+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    RELREDAVRQLARLRSADLMVNNETFHRFFTEGVPVTSVSGGYERGDRV-----MLVDFE  118
               L ++ + +++R  S+D++V+N +FH+++  GVPV      Y R+D+V     +L+DF+
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPV-----EYKRDDKVIHDTALLMDFN  116

Query  119   HPETNDFTAVNQFTIIENHINKRPDIILFINGIPLVVIELKNAADENADIASAWKQIQTY  178
             HPE N FT VNQ +I      +RPD+I +ING+P+ VIELK+++D NADI +A +Q+QTY
Sbjct  117   HPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  179   KEAIPSLFTFNSFAIISDGLEARAGTISSGQSRFMAWKSADGRKDASGHTGQIETLIKGM  238
             K+ I+ LF  N   +ISDG +AR G++++++ RF++WK+     D +    Q+E +++G 
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  239   LNTQTLPDLIRHFIVFEKTRREDSKGITAVETVKKLAAYHQYYAVNKAVESTLRASG--Y  296
             +N + L D IR FI+FE     D+K +     +KK+AAYHQ+ AV  AV++T+ AS   +
Sbjct  237   FNRELLLDYIRYFILFE----SDGKRL-----IKKIAAYHQFHAVREAVNATIVASTGKF  287

Query  297   VKKSKGIHKGIGAESENAAAEDPESYGLPGVKTQPLRDRKGGVIWHTQGSGKSLSMVFFT  356
             +     I  G                            +K+GV+WHTQGSGKS+SM  ++
Sbjct  288   LPLRSNIKPG---------------------------SKKAGVVWHTQGSGKSISMCCYA  320

Query  357   GKII--LAMDNPTVVVITDRNDLDDQLFDTFSASKQLLRQEPVQAESRGQLKELLKV-VS  413
             GK++    M+NPT+VV+TDRNDLD+QL+ TF  +K+LL+QEP QA +R+QL+E+L    S
Sbjct  321   GKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARES  380

Query  414   GGVVFTTIQKFQPEDGSNLYEELSKRENIIVIADEAHRSQYGFTAKTLDEKNEAGEVIGK  473
             GG++FTT+QKF P DG +    L+ R+NI+VI+DEAHRSQYG++A TLD           
Sbjct  381   GGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSA-TLDKDGAYK-----  434

Query  474   KTVYGFAKYLRDALPNATYLGFTGTPIESADVNTPAVFGNYVDIYDIAQAVEDGATVRIY  533
                YG+AK +RDALPNA+++GFTGTP+ S D +T AVFG+YV IYDI +AV+DGATV IY
Sbjct  435   ---YGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIY  491

Query  534   YETRLAKISLSDEG-KRLIQEFDDDLEMTELAETQKAQAKWAQLEALVGSSGRIKKIALD  592
             YE+RLAK+ L++E    L  + DD +E  E  + +K+++ W++LE LVGS  RIK++A D
Sbjct  492   YESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAAD  551

Query  593   IVTHFEQRQTVLNGKAMIVAMSRRIAAALYEEITVLRPEWHNSDLDKGSIKVVMTSSSSD  652
             +V HF  R++ +NGKAMIVAMSR I   LY+ +  LRPEWH+ D++KG IK++MT+S+SD
Sbjct  552   LVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASD  611

Query  653   GPEISKHHTTKDQRRKLSDRMKNPHDELRLVIVRDMWLTGFDVPALHTLYIDKPMRGHNL  712
               ++  H   K+ +++L  R K+ +D L++VIVRDMWLTGFD P  HT+YIDKPMRGHNL
Sbjct  612   KEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNL  671

Query  713   MQAIARVNRVYLDKKGGLIVDYLGIASDLKDALSFYSASGGRGDPAETQEQAVSLMLEKL  772
             MQAIARVNRV+ DK GGL+VDY+GIA++LK+AL  Y+ S G+G+ +    +A +++LEKL
Sbjct  672   MQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKL  731

Query  773   EVVSQLF------HGFDYSPYFSAGTGQKLSLILAAEEHILQQEDGRRRFLDQVTALSQA  826
             +V+  +F       GFDYS++      +   ++L A + IL  +DG++R++D V AL++A
Sbjct  732   DVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKA  787

Query  827   FAIAVPHDKAMDVKDEVAFFQAVKARLAKFDGPASDETVSGKSSGASAQTASSLETAIRQ  886
              ++    D A  ++ E+AF+ AVK  + K+       T ++K  + S +     ++ + +
Sbjct  788   WSLCSTLDEAKPLQKELAFLSAVKVAIIKL-------TTTDKKFSQSEK-----NSLLSR  835

Query  887   IVDQALVTSRVIDVYEAAGIKKPDISILSEEFLMDVKNMEHKHLAMEVLRKLLADEIRAR  946
             I+D+A+V++ V DV+  AG+ KP+I++LS+EFL +V++M +++LA+E+L KLL D I+AR
Sbjct  836   ILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHAR  895

Query  947   LKTNLVEGKTLMEMLENSIKNYQNKIVTAAEVIDELISLARDIHKRDTAFEELKLTEYEY  1006
              + N+V+ K   + L   +  Y+N+ + +A+VI+ELI +A++++   +  + L L   E 
Sbjct  896   TNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEI  955

Query  1007  AFYTAVANNESARELMGKEQLRELAVVLYRKVKENASIDWTIREDVRAKLKVTVKRLLRE  1066
             AFY A+A+NESA   +G E L+ LA+ +  +++ ++++DW +RE VRA+L++ V++ L  
Sbjct  956   AFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLK  1015

Query  1067  YGYPPDMEALATETVLQQAEKIAD  1090
             Y YPPD    A E +L+QAE +++
Sbjct  1016  YKYPPDKALDAVELILKQAEVVSN  1039

140) Zmob_1744 in NC_017180


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1043 (48%), Positives = 734/1043 (71%), Gaps = 38/1043 (3%)

Query  27    GPDIAPGGKKPERASLSDVILEKRLRAAIDRLNPHLLQASRDETLLALIREDTPDHVDEN  86
             GPDIAP+GK+P R S+ DV+L   +R  ++ LNPHL  +  DE +  + R ++PD V  N
Sbjct  25    GPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSN  84

Query  87    RRLHDYLVNGVPVDVVREDGTQSGDRVRLLDFDTPENNDFLVVRQFVLEKDEANRRPDLV  146
             + +H+ L++GVPV+  R+D    +  + L+DF+ PENN F VV Q  +      RRPD++
Sbjct  85    KAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPENNRFTVVNQVAISGTKQLRRPDVI  143

Query  147   LFINGMPLGVVELKSPSSENATLDSAWNQFQTYRSLISSLFRFNEALMISDGTQARVGSL  206
              +ING+P++V+ELKSPS  NA + +A NQ+QTY++ IS LF  NEAL+ISDG +AR+GSL
Sbjct  144   CYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSL  203

Query  207   TAGRDRFMPWRTINGEDLIAKNHEEMETVLRGVFTPHWFLGLIRDFVLFGEKNGSPIKIL  266
             TA+ +RF+PW+TI+ ED  +  ++++E V+ G F  + +L+ IR F+LF       IK +
Sbjct  204   TADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKI  263

Query  267   AGYHQFHACLKAVTQTV----------RASAPDGNRKVGVVWHTQGSGKSLLMTFYAGVI  316
             A+YHQFHA   AV  T+          R++   G++K GVVWHTQGSGKS+ M  YAG +
Sbjct  264   AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKL  323

Query  317   ARHPEMENPTIIVLTDRNDLDDQLFATFSGAQALLRQIPEQADSRDDLQKLLR-RTSGGV  375
              +++EM+NPTI+V+TDRNDLD+QL++TF  A+ LL+Q P+QA +RD+L+ +L  R SGG+
Sbjct  324   LQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGI  383

Query  376   IFTTLQKFQPEDGETSLPMLTDRRNVVVMADEAHRSQYGLEAKFNPKTGKMTYGFAKYLR  435
             IFTT+QKF P DGE + P L  R N+VV++DEAHRSQYGL A ++ K G   YG+AK +R
Sbjct  384   IFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMR  442

Query  436   DALPNASFIGFTGTPIENADVNTRGIFGdyidiydiAQAVEDGATVPIYYESRLVRIeld  495
             DALPNASF+GFTGTP+ + D +TR++FGDY+ IYDI +AV+DGATVPIYYESRL +++L+
Sbjct  443   DALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLN  502

Query  496   edlkdelddeladIVEGLCENEEHKLSQKYSRVEALVGSEPRLRRIAVDLVTHFENRLNA  555
             ++  + L  ++ D+VE+   ++ +K     SR+E LVGSEPR++++A DLV HF  R  +
Sbjct  503   HEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  556   LEGKGMIVGMSRAICVALYNEIIRLRPAWHSDDDNEGAIKVVMTGSSSDPAGLQPHIGKK  615
             ++GK+MIV+MSR ICV LYN ++ LRP WHS+D + G IK++MTGS+SD   LQPHI +K
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  616   SKARRELLAKRMKDNNDPLRLVIVRDMWLTGFDVPSMHTMYVDKPMRGHGLMQAIARVNR  675
                +R  L  R KD NDPL++VIVRDMWLTGFD P  HTMY+DKPMRGH LMQAIARVNR
Sbjct  623   QTKKR--LEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNR  680

Query  676   VFKGKPGGLVVDYIGLAQNLKAALGEYSAG-DREQVGIDEGKAIRALQERYEVVRAMF-N  733
             VFK+KPGGLVVDYIG+A++LK AL  Y+ + ++ Q  ID   A+  L E+ +V+++MF +
Sbjct  681   VFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAK  740

Query  734   PGQAAGFDYRPALQDEATAKTKLSIMAGALDHILGQQQRAMVTAKSAEERKAIQKRYPDG  793
                 +GFDY +A+++++       ++ +A + ILG ++               +KRY D 
Sbjct  741   TTTDPGFDY-SAFENNPQ-----HVLLDAANYILGLDDG--------------KKRYFDV  780

Query  794   VKalsvafalasasdeaarlrdEIGFFEAVRAALVKSASNGSDGRSAQELELAIKQLVSK  853
             V AL+ A +L S+ DEA  L+ E++F+ AV+ A++K ++ +     ++   L + +++ +
Sbjct  781   VLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSL-LSRILDN  839

Query  854   AVISTDIIDIMEVAGIGKPDISILSDTFLQEVREMPQRNLAIDALKKLLEGQIRSRTRTN  913
             A+++T++ D+  +AG++KP+I++LSD FL+EVREMPQRNLA++ L KLL++ I++RT  N
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  914   ITEAEAFSQRLEQAVARYHANALTSAQILDELIRMAHDMVSACDRGEELGLTQEEIAFYD  973
             + +   +S+RL   + RY+  A+ +AQ+++ELI+MA +  +A  R++ LGL  +EIAFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  974   ALAQNESAKEAMGDPGLRAIATALVKTIRVNATVDWTVMAQARAKMRTSVKRLLRRYGYP  1033
             ALA+NESA   +GD  L+ +A  +   +R ++TVDW V    RA++R  V++ L +Y YP
Sbjct  960   ALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYP  1019

Query  1034  PDMQDEAVQHILRQAEQFAPVWA  1056
             PD   +AV+ IL+QAE  +  W+
Sbjct  1020  PDKALDAVELILKQAEVVSNSWT  1042

141) AFE_2790 in NC_011761


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 459/1044 (44%), Positives = 725/1044 (70%), Gaps = 39/1044 (3%)

Query  4     LNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEAP  63
             L+E  +E+ +++ F   G     GPDI+PD+++  R  +++ +L   +R  ++ LNP+ P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    KEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVDGEERGSIVRLIDYDHPEKN  123
               + DE + ++      +++  N  F+++L+ GV V    D+        L+D++HPE+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQADIP  183
              + VVNQ ++   +  RR+D++ ++NGLP++++ELK+ +D NA  + A NQLQTY+ +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   NLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEPVR  243
             +L   N  LVISDG +A +G L A  ERFLPWKTI  ++     ++ L  +++G F+   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  244   FLDLIRYFIAISDDGRKLSKKIAAYHQFHAAQKALLTTLASAG----------IGGDRRG  293
             +LD IRYFI +  DG++L KKIAAYHQFHA + A+ +T+ ++             G +++
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  294   GVVWHTQGSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFAAGKQLLRQD  353
             GVVWHTQGSGKS++M  +AG L+Q++ ++NPTI+++TDR +LD QL+ TF  +K+LL+Q+
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  354   PQQADSVSDLRELLQ-RASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRS  412
             PQQA +  +LRE+L  R SGG++F+T+QKF    +E    HP L+ R NI+V+ DEA+RS
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQ--AHPALNLRDNIVVISDEAHRS  419

Query  413   QYEILK----------GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQ  462
             QY +            GYA ++R ALPNA+F++FTGTP+  +D+DTR VFGDY+ IYDIQ
Sbjct  420   QYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  463   RAVEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALV  522
              AV+DGATVPIYYESRL +L+L +++   + S  +++ ED+E ++KE+ K  W++LE LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  523   GAPKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQG  582
             G+  R+ Q+AADL+ H   R++ ++GKAMIVAMSR I V LY+A+V ++P+W+++D  +G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  583   RIKVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNT  642
              IK++MTGSASD  + +PHI +K  +  +  R+KD +DPL IVIVRDMWLTGFDAP  +T
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  643   LYVDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAET  702
             +Y+DKPMRGH LMQAIARVNRVF +K+GGLVVDYIGIA++LK+A+ TYT S GKG+ +  
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  703   VQTAIKVLLEKLDICRGIF------HGCDYQDYLTDDGSEKVATLRKATEFILSQELTEE  756
              + A+ VLLEKLD+ +G+F       G DY  +  ++ ++ V  L  A+++IL+     +
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHV--LLDAANYILGL----D  771

Query  757   GVKRRFRNATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATLDKSSEAESLVEEQEYA-  815
             + K+R+ +   +L+KA +L +  D     + E+ F+ +V+ ++ K + ++    + E   
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  816   -IRQLIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDK  874
              + +++D++I + GV D++A+AGL K++I+LLSDEF++++  MP++NLA+E+L +LL+D 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  875   VRKEGKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLS  934
             ++   + N++Q K +S++L   L +Y+NR+++T +V++ELI++AK +QA   R+  LGL+
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  935   KDEAAFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKR  994
              DE AFYDALA N+SAV+ +GDE+LK +A EV+  +R++T +DW +RE  RA+LR +V++
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  995   VLRKHGYPPDMQEGAVNLVIEQAE  1018
              L K  YPPD   +AV+L++ QAE
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAE  1035

142) Lferr_2413 in NC_011206


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 459/1044 (44%), Positives = 725/1044 (70%), Gaps = 39/1044 (3%)

Query  4     LNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEAP  63
             L+E  +E+ +++ F   G     GPDI+PD+++  R  +++ +L   +R  ++ LNP+ P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    KEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVDGEERGSIVRLIDYDHPEKN  123
               + DE + ++      +++  N  F+++L+ GV V    D+        L+D++HPE+N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124   DLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQADIP  183
              + VVNQ ++   +  RR+D++ ++NGLP++++ELK+ +D NA  + A NQLQTY+ +I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184   NLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEPVR  243
             +L   N  LVISDG +A +G L A  ERFLPWKTI  ++     ++ L  +++G F+   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  244   FLDLIRYFIAISDDGRKLSKKIAAYHQFHAAQKALLTTLASAG----------IGGDRRG  293
             +LD IRYFI +  DG++L KKIAAYHQFHA + A+ +T+ ++             G +++
Sbjct  242   LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  294   GVVWHTQGSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFAAGKQLLRQD  353
             GVVWHTQGSGKS++M  +AG L+Q++ ++NPTI+++TDR +LD QL+ TF  +K+LL+Q+
Sbjct  302   GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  354   PQQADSVSDLRELLQ-RASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRS  412
             PQQA +  +LRE+L  R SGG++F+T+QKF    +E    HP L+ R NI+V+ DEA+RS
Sbjct  362   PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQ--AHPALNLRDNIVVISDEAHRS  419

Query  413   QYEILK----------GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQ  462
             QY +            GYA ++R ALPNA+F++FTGTP+  +D+DTR VFGDY+ IYDIQ
Sbjct  420   QYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQ  479

Query  463   RAVEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALV  522
              AV+DGATVPIYYESRL +L+L +++   + S  +++ ED+E ++KE+ K  W++LE LV
Sbjct  480   DAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLV  539

Query  523   GAPKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQG  582
             G+  R+ Q+AADL+ H   R++ ++GKAMIVAMSR I V LY+A+V ++P+W+++D  +G
Sbjct  540   GSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKG  599

Query  583   RIKVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNT  642
              IK++MTGSASD  + +PHI +K  +  +  R+KD +DPL IVIVRDMWLTGFDAP  +T
Sbjct  600   EIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHT  659

Query  643   LYVDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAET  702
             +Y+DKPMRGH LMQAIARVNRVF +K+GGLVVDYIGIA++LK+A+ TYT S GKG+ +  
Sbjct  660   MYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID  719

Query  703   VQTAIKVLLEKLDICRGIF------HGCDYQDYLTDDGSEKVATLRKATEFILSQELTEE  756
              + A+ VLLEKLD+ +G+F       G DY  +  ++ ++ V  L  A+++IL+     +
Sbjct  720   ARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF--ENNPQHV--LLDAANYILGL----D  771

Query  757   GVKRRFRNATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATLDKSSEAESLVEEQEYA-  815
             + K+R+ +   +L+KA +L +  D     + E+ F+ +V+ ++ K + ++    + E   
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  816   -IRQLIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDK  874
              + +++D++I + GV D++A+AGL K++I+LLSDEF++++  MP++NLA+E+L +LL+D 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  875   VRKEGKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLS  934
             ++   + N++Q K +S++L   L +Y+NR+++T +V++ELI++AK +QA   R+  LGL+
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  935   KDEAAFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKR  994
              DE AFYDALA N+SAV+ +GDE+LK +A EV+  +R++T +DW +RE  RA+LR +V++
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  995   VLRKHGYPPDMQEGAVNLVIEQAE  1018
              L K  YPPD   +AV+L++ QAE
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAE  1035

143) MmTuc01_2253 in NC_020389


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  751 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/1065 (44%), Positives = 724/1065 (68%), Gaps = 73/1065 (6%)

Query  22    QGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIRQVRRLNS  81
             QG + + +PDIAPD+  P R  F+DV+L   +RK +  +NP++PA   ++ I ++ R +S
Sbjct  18    QGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPES  77

Query  82    PELISNNEAFHKMLTEGINVSYRKDGADRGDLVWLVDFKDPENNDFLVANQFTVVENDKN  141
             P+++ +N AFH +L  G+ V Y++D+    D   L+DF++PENN F V NQ ++    + 
Sbjct  78    PDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  142   KRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGFMVISDGLE  201
             +RPD+I ++NGLP+ VIELK+P+D NA +++AF Q+QTYK+ I+ LF  N  +VISDG +
Sbjct  138   RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  202   ARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHFIVFEKSKK  261
             AR GSL+A+  RF++WK+    ++ + L  QLE +++G +++  LLD +R FI+FE   K
Sbjct  198   ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  262   EDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIHYESPENYG  321
                       + +KK+A+YHQ+ AV  AV++T+ AS                     ++ 
Sbjct  258   ----------RLIKKIAAYHQFHAVREAVNATIVAS-------------------TGKF-  287

Query  322   LPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIV--LAMDNPTLVVITDRNDLDDQL  379
             LP   +   G +K+GV+WHTQGSGKS++M  Y+GK++    M+NPT+VV+TDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  380   FDTFAASKQLLRQEPVQAENRDHLKQLLNV-ASGGIVFTTIQKFQPEEGN-VYPKLSDRK  437
             + TF  +K+LL+QEP QA NRD+L+++L    SGGI+FTT+QKF P +G+   P L+ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  438   NIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDV--------------  483
             NI+VI+DEAHR+QYG+ A      D +G        YG+AK  RD               
Sbjct  408   NIVVISDEAHRSQYGLSA----TLDKDGA-----YKYGYAKHMRDALPNASFMGFTGTPV  458

Query  484   -----NTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkklvaeldee-ld  537
                  +T  VFG+YV IYDI ++V+DGATV IYYESRLAK+ L++E    ++   ++ ++
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  538   kedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMIVAMSRRIAA  597
              E+  + +K K+ W++LE L+GSE+RIKQ+A D+V HF  R+   +GK+MIVAMSR I  
Sbjct  519   DEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICV  578

Query  598   DLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSEGPKISKHHTTKDQRRILAERMKNPEDE  657
              LY+ ++ ++PEWHS+D+ KG IK++MT+++S+   +  H   K+ ++ L  R K+ +D 
Sbjct  579   RLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDP  638

Query  658   LKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSLIVDYLGIAS  717
             LK+VIVRDMWLTGFD PC HTMYIDKPM+GH LMQAIARVNRV+KDKPG+L+VDY+GIA+
Sbjct  639   LKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIAN  698

Query  718   DLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMF------HGFTFDDYFEADTS  771
             +LK+AL  Y+DS GKG+ ++    A  ++LEKL+++  MF       GF +   FE +  
Sbjct  699   ELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQ  757

Query  772   RKLSIILEAEEHILGLENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAVKARL  831
             +   ++L+A + ILGL++GKKRY+D V AL+KA SL    ++A  ++ E++F  AVK  +
Sbjct  758   H---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAI  814

Query  832   VKFDGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSEDFLLEVRNM  891
             +K+  T+   ++ + ++ + +++D+A+V+  V DVF  AG+ KP+I++LS++FL EVR+M
Sbjct  815   IKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREM  874

Query  892   EHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAEVIEELIKL  951
              ++NLA+E+L KLLND I+AR ++N++Q +   + L   + RY+N+ + +A+VIEELI++
Sbjct  875   PQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQM  934

Query  952   SKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEKVKQNASID  1011
             +KE++      + +GL+  E AFY A+A+NESA   +  E L+ LA+ +  ++++++++D
Sbjct  935   AKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVD  994

Query  1012  WTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIAD  1056
             W ++ESVRA+L+++V++TL +Y YPPD    A E +LKQAE++++
Sbjct  995   WQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

144) hsdR1 in NC_016894


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  747 bits (2828),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1023 (45%), Positives = 708/1023 (70%), Gaps = 65/1023 (6%)

Query  30    GPDISPGGEAPERQDHREVILAERVKDALFRINRDLPQEALDEAYRQIITFNSPMLAENN  89
             GPDI+P+G  P R   ++V+L    +  L  +N +LP   +DE   +I   +SP +  +N
Sbjct  25    GPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSN  84

Query  90    RHFHRLLTEGIEVSFSEKGNIRTKRAFVINYEQPETNDFLVVNQFTIIEHEE-RRPDLIL  148
             + FH+LL  G+ V +   +++    A+++++++PE N F VVNQ +I    + RRPD+I 
Sbjct  85    KAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVIC  144

Query  149   FINGLPLIVVELKSASDENVGISSAYNQIQTYKKDLPNLFVYNAFCILSDGINAKAGTLT  208
             +INGLP+ V+ELKS+SD N +I +A+NQ+QTYK+++++LF+ N   ++SDG NA+ G+LT
Sbjct  145   YINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLT  204

Query  209   SNEERFMNWRTVDGVVIEPKANPQYEVLFHGMLKPQRVLEIIRYFILFQESQQSDTDKNG  268
             ++EERF+ W+T+      P  + Q E + +G ++ + +L+ IRYFILF+           
Sbjct  205   ADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFE-----------  253

Query  269   QKLGDKKAIIKILAAYHQYFAVQKAVEKTREAAGED----------GDRKIGVIWHTQGS  318
                +D K +IK +AAYHQ+ AV+ AV+ T  A+             G +K GV+WHTQGS
Sbjct  254   ---SDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGS  310

Query  319   GKSFSMVFYTAALVR--ELNNPTIVVITDRNDLDDQLFATFSKSQDILRQTPKLAHTRKL  376
             GKS+SM  Y++ L++  E+NNPTIVV+TDRNDLD+QL++TF +++D+L+Q P+ A  R  
Sbjct  311   GKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNR--  368

Query  377   TASQKAQQNGTNAVAINGLYELLNDREAGGIIFTTIQKFTPESGEM--PVLTDRKNVIII  434
                             + L E+L  RE+GGIIFTT+QKF+P  GE   P L  R N+++I
Sbjct  369   ----------------DQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVI  412

Query  435   ADEAHRSQYGLAAKTDLKSGAVKYGYAKYLRDALPNASFIGFTGTPIDLDDRSTTSVFGQ  494
             +DEAHRSQYGL+A  D K GA KYGYAK +RDALPNASF+GFTGTP+  +D+ T +VFG+
Sbjct  413   SDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGD  471

Query  495   CIDTYDMTRAVEDEATVRIYYENRIIKLDTVDTELIKIDAAFEDITEGQEDTERDKNKAT  554
              +  YD+  AV+D ATV IYYE+R+ KLD  + EL  + +  +D+ E++E  +++K K+ 
Sbjct  472   YVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGD  531

Query  555   WSRLEAVVGSPNRIKKLAEDIIAHYEEKSKAITGKAMVVCMSRRICAELYDAMVTLRADW  614
             WSRLE +VGS  RIK++A D++ H+  ++ ++ GKAM+V MSR IC  LY+A+V+LR++W
Sbjct  532   WSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEW  591

Query  615   HSDDVNQGKIKVVMTGSAADSEKLQPHIGGKQRRDTLAKRMKDNSDELSIVLVRDMWLTG  674
             HS+DV++G IK++MTGSA+D E LQPHI  KQ +  L  R KD +D L IV+VRDMWLTG
Sbjct  592   HSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  675   FDVPSLHTMYIDKPMQGHGLMQAIARVNRVFKEKSGGVVVDYLGILESLKKALNQYTNS-  733
             FD P  HTMYIDKPM+GH LMQAIARVNRVFK+K+GG+VVDY+GI + LK+AL+ YT+S 
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  734   DRGNTGIDVNVAVAIMTEKLEILKDMM------HGYDFSAYFGDSKVKRLRAITGGMDFV  787
             ++G+T ID   A A++ EKL+++ +M        G+D+SA+  +++    + + ++ +++
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYI  767

Query  788   LGKSMEDQKEFKTITIELAKSHSLCAATEDAKARALEVNYFKAVKASMVKFSDSERVDPT  847
             LG   +++K +  + + L K+ SLC++ ++AK+   E+ ++ AVK +++K++ +++    
Sbjct  768   LGLD-DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK---K  823

Query  848   LSKQEVEARLHQLLERSIISEDVIDVFDVMGIKRPDISLLSEDFLEEVRAMKEKNLAVEM  907
             +S+ E ++ L ++L+ +I++ +V DVF + G+ +P+I+LLS++FLEEVR M ++NLAVE+
Sbjct  824   FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  908   LRKLLEGNIKGMERSNLVKSEKFSEKLQKALNKYRNQAITNAEVIEELIRMAHEIRQMKE  967
             L KLL++ I +   +N+V+  K+S++L+  L +Y N+AI  A+VIEELI+MA E++    
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  968   AEAKLGLSEDEIAFYDALTADE-IVREFMEDDTLKTIAQELTIAIRNNITIDWSVRKSAQ  1026
              +  LGL+ DEIAFYDAL+ +E  VRE + D+TLK +A E+T  +R++ T+DW VR S +
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRE-LGDETLKKLAIEVTAQLRKSTTVDWQVRESVR  1002

Query  1027  ASM  1029
             A +
Sbjct  1003  ARL  1005

145) Mhun_2781 in NC_007796


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  745 bits (2818),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/1039 (45%), Positives = 712/1039 (69%), Gaps = 25/1039 (2%)

Query  6     LCESDVEETALDIFRDLGYEVLYGYEVAPGERDQIRNSFEEYLLGSRLEDAIFRLNKTLP  65
             L E D+E+ +L+ F + G EVL G ++AP+ ++ +R SF++ +L + +   +  LN  LP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  66    CDAHEAAQKILTNPGHTTLIQNNKTVHEMLSGGITVEYRRKDGSVGGDQVRLIDFEHPEN  125
                 +     +T P    ++ +NK+ H++L +G+ VEY+R D  + +  + L+DF+HPEN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  126   NEFLVVNQFTIQEGKNHRRPDIVLFINGIPVIIFELKNPTDERATLTIAHNQLQTYMQEI  185
             N F VVNQ +I   K+ RRPD++ +ING+P+ ++ELK+P+D  A +  A NQLQTY +EI
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  186   PSFFSYNTMAIISDGIQTRIGTLSASLERFSRWRTIDGAQEAPNHIPEIEVLIRGVCNKK  245
             + +F  N   +ISDG ++RIG+L+A  ERF  W+TI   ++ P    ++E ++ G  N+ 
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRE  240

Query  246   RLLDLIRFFIVFEEDERGNTIKKLAGYHQYHAVNLAVRSTETAISD----------VGDR  295
              LLD IR+FI+FE D +   IKK+A+YHQ+HAV  AV +T  A ++           G +
Sbjct  241   LLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSK  299

Query  296   RCGVVWHTQGSGKSLTMVFYSGKIIQTPSLQNPTILVITDRNDLDDQLFGTFSRCRKLLR  355
             + GVVWHTQGSGKS++M  Y+GK++Q + ++NPTI+V+TDRNDLD+QL+ TF + + LL+
Sbjct  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLK  359

Query  356   QTPIQAEGRDHLKTLLSV-ASGGVVFTTIQKFFPEDENKETYPLLSDRKNIIVIADEAHR  414
             Q P QA  RD+L+ +L+   SGG++FTT+QKF P D + ++ P L+ R NI+VI+DEAHR
Sbjct  360   QEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGE-QAHPALNLRDNIVVISDEAHR  418

Query  415   SQYGMHGKVSKKGEISYGFAKYIRDALPNASFIGFTGTPIDLQDKVTRNVFGEYISVYDI  474
             SQYG+ + + K G   YG+AK +RDALPNASF+GFTGTP+  +DK TR VFG+Y+S+YDI
Sbjct  419   SQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDI  478

Query  475   QQAIKDKATVPIYYESRIVDIRMNEQIKPLIDQefeevteneevirkeKLRTKWAALEAI  534
             Q+A+ D ATVPIYYESR+  + +N++    +  + +++ E+EE  +KEK +  W+ LE +
Sbjct  479   QDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKL  538

Query  535   VGDEKRINEVADDLIRHFKQRSDAIEGKAMIVCMSRRICVELYKALVERQPDWDSHSDNE  594
             VG E RI++VA DL++HF  R+ +++GKAMIV MSR ICV LY+ALV  +P+W+S+  + 
Sbjct  539   VGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEK  598

Query  595   GFLKVIMTGSAGDEKDFQKHIRPKSGRELLAKRFKDPEDPFKIAIVRDMWLTGFDVPCLH  654
             G +K+IMTGSA+D  ++Q HI  K  +  L  RFKD +DP+KI IVRDMWLTGFD PC H
Sbjct  599   GEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCH  658

Query  655   TMYIDKPMKGHTLMQAIARVNRVWRDKPGGLIVDYIGLAEELKKALVTYTESKGKGDPVF  714
             TMYIDKPM+GH LMQAIARVNRV +DKPGGL+VDYIG+A+ELK+AL TYT+SKGKG+  +
Sbjct  659   TMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTI  718

Query  715   DQERIVDKMMEKYEVCCHLF------HGFDWSGWRGAPAATRLSILQAGFNYVLDDPERK  768
             D       ++EK +V   +F       GFD S+    P      +L  + NY+L+  + K
Sbjct  719   DARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGK  774

Query  769   SDFMQHVLELSQAFALALPHEKAIEIREDVAYFQAVRAQIIKTSEGAGK-SEYELNLAVK  827
               + + VL L++A +L    + A  ++ ++A++ AV+  IIK +    K S+ E N  + 
Sbjct  775   KRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLS  834

Query  828   QIVSKSIVPLGIVDIFKEMGKDVGDISVLSEEFLNDLLKYKNQNVAIAAMTRLLNDQIRA  887
             +I+ ++IV+ G+ D+F   G D  +I++LS+EFL+++    ++N+A+  + +LLND I+A
Sbjct  835   RILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHA  894

Query  888   RTRKNTTEARKFSEMLEQTINKYNNRKVTTQEILKELAQIAREIREAQQRGEDLGLTEAE  947
             RT +N  + +K+S+ L   + +YNNR + T +++ EL Q+A+E++ A  R++ LGL   E
Sbjct  895   RTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDE  954

Query  948   LAFYDALGVNDSAVVILGDDILKKIAQDLVKTIRENVTIDWSSRESVRAKMRVAIKRILR  1007
             +AFYDAL+ N+SAV  LGD+ LKK+A ++   +R + T+DW  RESVRA++R+ +++ L 
Sbjct  955   IAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLL  1014

Query  1008  VNGYPPDKQENAIQTVMQP  1026
                YPPDK  +A++ +++ 
Sbjct  1015  KYKYPPDKALDAVELILKQ  1033

146) Cag_1124 in NC_007514


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  737 bits (2790),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1088 (44%), Positives = 745/1088 (69%), Gaps = 61/1088 (5%)

Query  4     LTEHSIETFAIELLYKLGYEYIYAPDIAPDTSAGSVSEIRESFAQVLLLNRLQNAVKRIN  63
             L+E+ +E +++  +   G E + +PDIAPD      + +R SF +V+L   +++ +  +N
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGK----NPLRISFHDVFLRPIFRKQLETLN  57

Query  64    HSIPADAQAEAIKEIQRIASPELLTNNETFHRLLTEGIPVSKrvdgddrgdrvWLIDFKN  123
               +PA    E I  I R  SP+++ +N +FH+LL  G+PV  + D+    D   L+DF++
Sbjct  58    PHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNH  117

Query  124   PHNNEFVVANQFTIIENGNNKRPDVILFVNGIPLVVIELKNATYENTTMHSAFKQIDTYK  183
             P+NN F V NQ +I    + +RPDVI ++NG+P+ VIELK+++  N+ + +AF+Q++TYK
Sbjct  118   PENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYK  177

Query  184   KTIPSLFTYNGFIVISDGLEAKAGTISSGFSRFMAWKSADGKAEASHLVSQLETLIQGML  243
             + I+ LF  N  +VISDG +A+ G+++++  RF++WK+     + + L  QLE +++G +
Sbjct  178   NEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFF  237

Query  244   NKETLIDLMRHFIVFEKSKKIDAKTGITTISTVKKLAAYHQYYAVNRAVESTLRASGYQL  303
             N+E L+D +R FI+FE   K            +KK+AAYHQ+ AV  AV++T        
Sbjct  238   NRELLLDYIRYFILFESDGK----------RLIKKIAAYHQFHAVREAVNAT--------  279

Query  304   VKETPLSMVMESPESY-GLRGVKKQPIGDKKGGVVWHTQGSGKSLSMVFYTGKIV--LAL  360
                     ++ S   +  LR+  K   G KK+GVVWHTQGSGKS+SM  Y+GK++    +
Sbjct  280   --------IVASTGKFLPLRSNIKP--GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEM  329

Query  361   DNPTILVITDRNDLDDQLFDTFAASKQLIRQEPVQAEDRNQLKELLKV-ASGGVVFTTIQ  419
             +NPTI+V+TDRNDLD+QL+ TF  +K+L++QEP QA +R+QL+E+L    SGG++FTT+Q
Sbjct  330   NNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQ  389

Query  420   KFQPNEGN-IYEKLSDRKNIVVIADEAHRTQYGFKAKTIDAKDEKGTIIGKKIVYGFAKY  478
             KF P +G+     L+ R NIVVI+DEAHR+QYG+ A    + D  G+       YG+AK 
Sbjct  390   KFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSA----TLDKDGAYK-----YGYAKH  440

Query  479   MRDALPNATYLGFTGTPIENTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVS  538
             MRDALPNA+++GFTGTP+ + D +T AVFG+YV IYDI +AV+DGATV IYYESRLAK+ 
Sbjct  441   MRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLD  500

Query  539   LSEEGKKLVAelddeleeeedVRAYSNTPQQKAKAKWTQLEALVGSENRIRNIAKDIVAH  598
             L++E    ++   D+L     V       ++K+K+ W++LE LVGSE RI+++A D+V H
Sbjct  501   LNHEELEALSSQVDDL-----VEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKH  555

Query  599   FNQRQEVCNGKGMIVAMSRRIAADLYQAIINLKPEWHSEDLNKGVIKVVMTSASSDGPKI  658
             F  R+   NGK+MIVAMSR I   LY+A++ L+PEWHSED++KG IK++MT+++SD   +
Sbjct  556   FAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHL  615

Query  659   SKHHTTKEQRRTLAERMKNPDDALQLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAI  718
               H   K+ ++ L  R K+ +D+L++VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAI
Sbjct  616   QPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAI  675

Query  719   ARVNRVYNDKPGGLIVDYLGIASDLKKALAFYSDAGGKGDPTILQEQAVQLMLEKLEVVS  778
             ARVNRV++DKPGGL+VDY+GIA++LK+AL  Y+D+ GKG+ TI   +A  ++LEKL+V+ 
Sbjct  676   ARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIH  735

Query  779   QMYY------GFAYETYFEADTSKKLSLILAAEEHILGLEDGKKRYINEVTALSKAFAIA  832
              M+       GF Y + FE +      ++L A + ILGL+DGKKRY++ V AL+KA ++ 
Sbjct  736   GMFAKTTTDPGFDYSA-FENNPQH---VLLDAANYILGLDDGKKRYFDVVLALNKAWSLC  791

Query  833   IPHDQAMDVKDEVSFFQTVKARLAKFDGTGSGKTDEEIETTIRQVIDKALISEQVIDVFD  892
                D+A  ++ E++F+ +VK  + K+  T+   ++ E ++ + +++D+A+++  V DVF 
Sbjct  792   STLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFA  851

Query  893   AAGIKKPDISILSEDFLMELKGMEHKNVALEVLKKLLNDEIKSRAKKNLVKSRTFLDMLE  952
              AG+ KP+I++LS++FL E++ M ++N+A+E+L KLLND I +R+++N+V+ + + D L 
Sbjct  852   LAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLR  911

Query  953   NSIKKYHNKILTAAEVIDELIKLGKEIVETDDEAKRMGLTDFEYAFYTAVANNDSAKELM  1012
               + +Y+N+ + +A+VI+ELI+++KE+  +      +GL   E AFY A+A+N+SA   +
Sbjct  912   AVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVREL  971

Query  1013  QQDKLRELAIVLTETIRQNTSIDWTIKESvkaklkvavkrvlrkYGYPPDMQLLATETVL  1072
              ++ L+ LAI +T  +R++T++DW ++ESV+A+L++ V++ L KY YPPD  L A E +L
Sbjct  972   GDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELIL  1031

Query  1073  KQAEMIAN  1080
             KQAE+++N
Sbjct  1032  KQAEVVSN  1039

147) Arth_0986 in NC_008541


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  732 bits (2770),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/1023 (44%), Positives = 718/1023 (71%), Gaps = 24/1023 (2%)

Query  27    GPDIAPEAAAAERSSYEQVYLLSRLRAAAVQINRGLDAALIDEAIKRLGRAESQNPVAEN  86
             GPDIAP++  + R S+++V+L + +R     +N  L A+L+DE I R+ R+ES + V  N
Sbjct  25    GPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSN  84

Query  87    LRVHELLTEGVPVEHRDAEGSVRTTRVRLIDFEDPAGNDWLAVNQFTIIENGKNRRPDVV  146
                H+LL  GVPVE +  +  ++ T + L+DF++P  N    VNQ +I    + RRPDV+
Sbjct  85    KAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPENNRFTVVNQVAISGTKQLRRPDVI  143

Query  147   LFLNGMPLGLLELKNLADEHATLKGAWNQIQTYRHDIPSLFTPNAVTVVSDGVSAAMSSF  206
              ++NG+P++++ELK+ +D +A + +A NQ+QTY+++I+ LF  N   V+SDG +A ++S+
Sbjct  144   CYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSL  203

Query  207   TGGFEHYAPWKTIDGREVVMNL-PAVEVLIKGVFDQKRFLDILQNFIVFSDESKGLVKRV  265
             T++ E++ PWKTI   +    L   +E +++G F++  +LD ++ FI+F  ++K L+K++
Sbjct  204   TADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKI  263

Query  266   AKYHQYWAVNAAVESTIEAAGPD----------GDRRGGVVWHTQGSGKSIEMLLYAAKI  315
             A YHQ+ AV  AV++TI A+             G +++GVVWHTQGSGKSI M  YA+K+
Sbjct  264   AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKL  323

Query  316   MRDIRMGNPTLLFITDRNDLDDQLFGEVFAPAEILPEKPVQadsradlrsl-lrrasGGI  374
             +++  M NPT++ +TDRNDLD+QL+     + ++L + P QA +R +LR +   R SGGI
Sbjct  324   LQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGI  383

Query  375   IFTTVQKFAPEAGGDTNPVLTDRRNVVVVADEAHRSQYGFTESLDERTGQLKSGLAKHMR  434
             IFTTVQKFAP  G +++P L  R N+VV++DEAHRSQYG++ +LD + G  K G AKHMR
Sbjct  384   IFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMR  442

Query  435   DALPNATYLGFTGTPIESNDKSTRSVFGDYIDIYDLTRAVEDGATVRIFYESRLAKVSLD  494
             DALPNA+++GFTGTP+ S+DK TR+VFGDY+ IYD+  AV+DGATV I+YESRLAK+ L+
Sbjct  443   DALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLN  502

Query  495   ADVHAAIdeladeitetaeedeatRAKSRWARLEAVVGANDRLDVIAGDIVDHWEKRRTE  554
              +   A+    D++ E  E D+  ++K+ W+RLE +VG++ R+  +A+D+V H   R + 
Sbjct  503   HEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNAT  562

Query  555   MFGKAMIVTMSRRIAVDLYDKIVKLKPEWHTDDPTTGMIKVVMTGSAADPQAFQPHIYDK  614
             M GKAMIV+MSR I V LY+ +V L+PEWH++D   G IK++MTGSA+D + +QPHIY+K
Sbjct  563   MNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNK  622

Query  615   KTRKDLKLRAKDPNDSLEIVIVRDMWLTGFDAPSMHTMYVDKPMQGAGLMQAIARVNRTF  674
             +T+K L  R KD ND+L IVIVRDMWLTGFDAP  HTMY+DKPM+G  LMQAIARVNR F
Sbjct  623   QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF  682

Query  675   RDKPGGLIVDYIGVATNLRRALAEYS-PSDRDQAGVPIEEIVSAMLEKHDIVRGLLHGCR  733
             +DKPGGL+VDYIG+A +L++AL  Y+ + +++Q+ +   +  + +LEK D+++G++   +
Sbjct  683   KDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFA--K  740

Query  734   YNSSPllapaarlaqhalVL----DFVMADPDRTARYLDQVLALAKAFALCGARDEAAAI  789
               + P +  +A   +   VL    +++++  D   RY+D VLAL KA +LC++ DEA ++
Sbjct  741   TTTDPGFDYSAFENNPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPL  800

Query  790   RNDVRMFADVRAATLKIQNPDSGRAGSGAVEIDTAIGQLVNEAVTADEVVDIYKLAGIET  849
             ++++  ++ V+ A +K+   D   + S   E ++ +++++++A+ A  V D++ LAG++ 
Sbjct  801   QKELAFLSAVKVAIIKLTTTDKKFSQS---EKNSLLSRILDNAIVATGVDDVFALAGLDK  857

Query  850   PELSILSDEFLDTLAGKEKPNLQMGLLRRLINDQIRTVQRTNIVQARKFSEQLDEAINRY  909
             P++++LSDEFL+ +    + NL + LL +L+ND I++    N+VQ +K+S++L   + RY
Sbjct  858   PNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRY  917

Query  910   TNRTLTTAEIIAELVKLAKDMRNQNDRHNRLGLSVAEAAFYDAIVQNDVAVLQMGDDTLK  969
              NR++ TA++I EL+++AK+ +    R++ LGL+  E AFYDA+ +N+ AV ++GD+TLK
Sbjct  918   NNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLK  977

Query  970   KIAVNLVSTVQRSATIDWSLKHSVRAAMRSKIRRLLARYDYPPDHEEKAIELILRQAELI  1029
             K+A+++ + +++S+T+DW +++SVRA +R  +R+ L +Y YPPD    A+ELIL+QAE++
Sbjct  978   KLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVV  1037

Query  1030  AGT  1032
             + +
Sbjct  1038  SNS  1040

148) Cyan7425_3142 in NC_011884


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  727 bits (2752),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/1062 (45%), Positives = 733/1062 (70%), Gaps = 48/1062 (4%)

Query  6     TEDQIEAYNLELLDALGYSYKHGSTIEPEGAAPERQSFGDVLLKDRLNEVIGRINSHIPP  65
             +ED++E  +L  + + G    HG+ I P+G  P R SF DV+L+  +   +  +N+H+P+
Sbjct  3     SEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPA  62

Query  66    EIRQQAQRELQNIASPDLISNNEAFHRYLTEGITVEYTKNGEIKGEQLWLIDWDNPDNNE  125
              + ++    +    SPD++ +N AFH+ L  G+ VEY +++ +  +   L+D ++P+NN 
Sbjct  63    SLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNR  122

Query  126   FLAVNQFTVIEDNHNRRPDIILFINGLPLVVIElknaadakanlqaaHNQLQTYKREIPS  185
             F  VNQ ++   ++ RRPD+I +INGLP+ VIELK+++D +A++ AA NQLQTYK EI+ 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  186   LFTYNALLVISDGISARAGSLSAPYSRFSQWKRKLPNGEIDNNPDTNELEILTQGMLNKA  245
             LF  N  LVISDG +AR GSL+A   RF  WK    + E D+    ++LE + +G +N+ 
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKT--ISNEDDKPLLEHQLENVVNGFFNRE  240

Query  246   TLLDLIRHFTVFEKVKIVDPNTEVVTLQTIKKLAAYHQYYAVNLAVESVIAATRSNY---  302
              LLD IR F +FE        ++   L  IKK+AAYHQ+ AV  AV++ I A+ +++   
Sbjct  241   LLLDYIRYFILFE--------SDGKRL--IKKIAAYHQFHAVREAVNATIVASTGKFLPL  290

Query  303   ---------RGGVVWHTQGSGKSLSMVFLSGKLV--LALDNPTIVVLTDRNDLDDQLFDT  351
                      ++GVVWHTQGSGKS+SM   +GKL+    ++NPTIVV+TDRNDLD+QL+ T
Sbjct  291   RSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTT  350

Query  352   FAGCRQLLRQDPQQADNRDAVRELLNV-ASGGIIFTTVQKFAPVEGETLYPKISDRTNIV  410
             F   ++LL+Q+PQQA NRD +RE+L    SGGIIFTTVQKFAP++GE   P ++ R NIV
Sbjct  351   FCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIV  410

Query  411   VLADEAHRSQYGFKAKQVNIKDEQGNVVGKQTRYGFAKYIRDALPKATFVGFTGTPVEQT  470
             V++DEAHRSQYG+ A      D +G       +YG+AK +RDALP+A+F+GFTGTPV   
Sbjct  411   VISDEAHRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSE  461

Query  471   DKNTPQVFGSYIDVYDIAQAVEDGATVPIYYESRLVKVdldehgrelldelded-lsfed  529
             DK+T  VFG Y+ +YDI +AV+DGATVPIYYESRL K+DL+++  E L    +D +  E+
Sbjct  462   DKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEE  521

Query  530   lGSTQQAKARQTQLEAIVGSTQRLETIAQDIITHFEKRQTANRGKGMIVTLSRQIAANLY  589
              +  +++K+  ++LE +VGS  R+  +A D++ HF  R+++  GK+MIV++SR+I   LY
Sbjct  522   TDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLY  581

Query  590   DNIIKLRPGWHSDDLNSGKIKVVMTASASDAGNLVAHHTSKKDRQVLAQRLKDPDNDLEL  649
             + ++ LRP WHS+D++ G IK++MT+SASD  +L +H  +K+ ++ L  R+KD ++ L +
Sbjct  582   NALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKI  641

Query  650   VIVCDMWLTGFDAPCLHTMYIDKPMKGHNLMQAIARINRVYFEKQGGLIVDYLGVAQELK  709
             VIV DMWLTGFDAPC HTMYIDKPM+GHNLMQAIAR+NRV+ +K GGL+VDY+G+A+ELK
Sbjct  642   VIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELK  701

Query  710   NALSFYSQSGGKGDLTVDQDVAIGLLLRTLEVVEGIMA------EFNYQPYFTASTGDKL  763
             +AL  Y++S GKG+ T+D   A+++LL  L+V++G+ A       F+Y ++      +  
Sbjct  702   QALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQ  757

Query  764   NILKSATNYVAD-PQIKDRFLDAVTALSKSYALIAHHPEAIAQAEKISFFQAIQASLRKL  822
             ++L  A+NY+ +  + K R++D V AL+K+ +L +   EA +    ++F+ A++ ++ KL
Sbjct  758   HVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

Query  823   EPSDGSLSNADIETAIRQVVDQALVSDTVINIFDEAGIKSPDVSVISDEFLADVEGMEHK  882
               +D  +S+++ ++ + +++D+A+V+  V ++F  AG+  P+++++SDEFL +V  M ++
Sbjct  818   TTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQR  877

Query  883   NLAVELLKRLLRDEVKAQRRTNLVRSRQLAEMLEESLRRYQNQVISVTEVIQELISLSKD  942
             NLAVELL +LL D + A+   N+V+ ++ ++ L   L RY+N+ I  ++VI+ELI ++K+
Sbjct  878   NLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKE  937

Query  943   VQAAKQRGEELGLEPYELAFYDALSQNQSAREVMGQDKLRELAITLVVRIRKNATIDWNL  1002
              QAA  R++ LGL+P E+AFYDAL++N+SA   +G++ L+ LAI +  ++RK++T+DW++
Sbjct  938   FQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQV  997

Query  1003  KESVRARMKVMVKRLLREYGYPPDMQALAIELVLEQAKVFTE  1044
             +ESVRAR++++V++ L  Y YPPD    A+EL+L QA V ++
Sbjct  998   RESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

149) hsdR in NC_010617


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  727 bits (2751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/1056 (45%), Positives = 731/1056 (70%), Gaps = 35/1056 (3%)

Query  4     FNENVVEQAALEYFAELGYRRVHGPDIAPGEPGAERESYEDVMLWGHVRDALRRINRGAD  63
             ++E+ +EQ +L  FA  G   +HGPDIAP+   + R S++DV L+   R  L  +N    
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64    AALVAEAVKTVQRAESQSPIDENARLHKLITEGVPVEHRGDDGLLRTTRLWLMDFDEPEN  123
             A+L  E +  + R+ES   +  N  +H L+  GVPVE + DD +++ T L LMDF++PEN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPEN  120

Query  124   NDWVAVSQFTIVENGKNRRPDVLVMVNGLPLSLLELKNPAAEHATLKSAWNQVQTYRHDI  183
             N    V+Q +I    + RRPDV+  +NGLP++++ELK+P+  +A + +A NQ+QTY+++I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PSVFVPNAVTVISDGTSAAMSSYSGAFEHYAPWKTI---EGREVVSNRPALEVLIKGVFE  240
             + +F+ N   VISDG +A ++S ++  E++ PWKTI   +++ ++ ++  LE +++G F+
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQ--LENVVNGFFN  238

Query  241   PKRFLDLLKNFVVFSDETVTDKSTGQPTRALVKRVAKYHQYWAVNAAVESTVQASSPD--  298
                +LD ++ F++F  +           + L+K++A YHQ+ AV  AV++T+ AS+    
Sbjct  239   RELLLDYIRYFILFESDG----------KRLIKKIAAYHQFHAVREAVNATIVASTGKFL  288

Query  299   --------GDRRGGVVWHTQGSGKSFEMVFYAAKIMRDPRMANPTLVFITDRNDLDDQLF  350
                     G +++GVVWHTQGSGKS+ M  YA+K+++++ M NPT+V +TDRNDLD+QL+
Sbjct  289   PLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLY  348

Query  351   GETFAPAR-ILPETPVQAATRSDLRAKLK-RASGGIVFTTLQKFAPGEDGDTNPVLTDRR  408
               TF  A+ +L + P QA+ R +LR  L  R SGGI+FTT+QKFAP ++ +++P L  R 
Sbjct  349   T-TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  409   NVIVIADEAHRSQYGFSETLDRHGRLKSGLAKHMRDALPGATYLGFTGTPIESKDKSTRA  468
             N++VI+DEAHRSQYG+S TLD++G  K G AKHMRDALP A+++GFTGTP+ S DK TRA
Sbjct  408   NIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  469   VFGDYVDVYDLTRAVEDGATVRIFYESRLAKIELSEVDHAALDELADEITESVEEDTATA  528
             VFGDYV +YD+  AV+DGATV I+YESRLAK++L++ +  AL    D++ E  E D    
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  529   AKSRWSRLEAVVGAEARLDLVARDIVEHWEKRRESLFGKGMIVTMSRRIAVRLYEKIVAL  588
             +K+ WSRLE +VG+E+R+  VA D+V H   R  ++ GK+MIV+MSR I VRLY+ +VAL
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  589   RPDWHSDDPAQGKIKVVMTGSASDPAEFQPHIHSKDVRKDLKLRAKNADDPLELVIVRDM  648
             RP+WHS+D  +G IK++MTGSASD  ++QPHI +K+ +K L  R K+ +DPL +VIVRDM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  649   WLTGFDAPSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQNALSEY  708
             WLTGFDAP  HTMY+DK M+G  LMQAIARVNR F+DKPGGL+VDYIG+  +L++AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  709   S-PSDREQAGVPIDEMVQVMLEKHDIVRGLLHGVQFDSSPELTASQRLNEYA--KVLDFV  765
             + + ++ Q+ +   +   V+LEK D+++G++     D++ + +A +   +       +++
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYI  767

Query  766   MADPDRTSRFNDQVlalakafalagaRDEAAAIRNNVRLFTDVRAAILKIQNPDSGRGGS  825
             ++  D   R+ D VLAL KA +L ++ DEA ++++++ +++ V+ AI+K+   D   + S
Sbjct  768   LGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQS  827

Query  826   GAVGIDTALGQLLNEAVAADQVVDVYKLAGVDTPDLSILSDEFLNSFAEKDKPNLQMGLL  885
                  ++ L+++L++A+ A  V DV+ LAG+D P++++LSDEFL+   E  + NL + LL
Sbjct  828   EK---NSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884

Query  886   HRLLNDQIRTVQRTNIVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKR  945
             ++LLND I++    N+VQ +K+S+ L   + RY NR++ TA++I EL+++AK+ +    R
Sbjct  885   EKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMAR  944

Query  946   HDDLGLSSAEVALYDAIAQNDSAVLEMGDETLKKIAVDVVWAVRNSVVIDWDQKEsvras  1005
             +D LGL++ E+A+YDA+A+N+SAV E+GDETLKK+A++V   +R+S  +DW+ +ESVRA 
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  1006  mrssvrrILAKYDYPPDAEDEAVNLVLEQAELYADS  1041
             +R  VR+ L KY YPPD   +AV+L+L QAE+ ++S
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

150) Anacy_6058 in NC_019773


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  724 bits (2737),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1067 (45%), Positives = 733/1067 (69%), Gaps = 49/1067 (4%)

Query  5     LTEAEIEAYQLQLLQTLGYSYCNGYDIQPEGSNQERESFGEVILKHRLPQSISRINPTIP  64
             L+E ++E   L  +   G    +G DI P+G N  R SF +V+L+  + + +  +NP +P
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  65    YDAQYQAQ-REIFNIASSDLLNNNEIFHKYLTEGITVEYQKDGETRGQPVQLIDWEHPEN  123
               + ++     I    S+D++ +N  FH  L  G+ VEY++D+    +   L+D +HPEN
Sbjct  62    -ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPEN  120

Query  124   NEFVAVNQFTVIEDNHNHRPDIVLFINGLPLVVIELKNAVDEKANLNAAYNQLQTYKQRI  183
             N F  VNQ ++   ++ +RPD++ +INGLP+ VIELK++ D +A++ AA+NQLQTYK+ I
Sbjct  121   NRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEI  180

Query  184   PSLFTYNALLVISDGLSARAGSLTAGFNRFSTWKVPPSAGEGNRQNPEINELEIltngll  243
             + LF  N  LVISDG +AR GSLTA+ +RF  WK    + E+++   E ++LE + NG++
Sbjct  181   SDLFICNEALVISDGYNARIGSLTADEERFLPWK--TISNEDDKPLLE-HQLENVVNGFF  237

Query  244   nqqtlldlIRYFTVFEKSKTTDLKTDIVSITTVKKIAAYHQYYAVNKAIQSIITASSPE-  302
             N++ LLD IRYF +FE            +   +KKIAAYHQ+ AV  A+++ I AS+   
Sbjct  238   NRELLLDYIRYFILFESD----------GKRLIKKIAAYHQFHAVREAVNATIVASTGKF  287

Query  303   ---------GNHKGGVLWHTQGSGKSLSMVFLAGKLVLNKSLQNPTIVMLTDRNDLDDQL  353
                      G+ K+GV+WHTQGSGKS+SM   AGKL+ +  ++NPTIV++TDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  354   FDTFAGCQQLLRQDPQQAENRDQVRELLNT-NSGGIIFTTVQKFSPADGETLYPQISPRP  412
             + TF   ++LL+Q+PQQA NRDQ+RE+L + +SGGIIFTTVQKF+P DGE   P ++ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  413   NIIVLADEAHRSQYGFTATQVDIKDENGNITGKRTKYGFAKYIRDALPNATFIGFTGTPV  472
             NI+V++DEAHRSQYG++AT     D +G       KYG+AK +RDALPNA+F+GFTGTPV
Sbjct  408   NIVVISDEAHRSQYGLSATL----DKDGAY-----KYGYAKHMRDALPNASFMGFTGTPV  458

Query  473   EQTDKNTPAIFGEYIDIYDISQAVKDGATVPIYYESRLVKVDLDAAGRQlldelded-ls  531
                DK+T A+FG+Y+ IYDI +AV DGATVPIYYESRL K+DL+    + L    +D + 
Sbjct  459   SSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVE  518

Query  532   fedlsTTQKAKAKQTQLEAIVGSTKRIKQIALDIVTHFEARQQVNKGKAMIVTMSRLIAV  591
              E+    +K+K+  ++LE +VGS  RIKQ+A D+V HF AR+   +GKAMIV+MSR I V
Sbjct  519   DEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICV  578

Query  592   NLYDAIIQLRPDWHNADINLGKIKVVMTTSASDEGNLVKHHTSKGQRQTLAQRLKDPDNS  651
              LY+A++ LRP+WH+ D++ G IK++MT SASD  +L  H  +K  ++ L  R+KD +++
Sbjct  579   RLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDP  638

Query  652   LELAIVCDMWLTGFDAPCLHTMYIDKPLKSHNLMQAIARINRVYFEKTGGLIVDYLGLAA  711
             L + IV DMWLTGFDAPC HTMYIDKP+++HNLMQAIAR+NRV+ +K GGL+VDY+G+A 
Sbjct  639   LKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIAN  698

Query  712   ELKKALSFYSQSGGQGALTLDQDVAVGILLAKLEIVKQIIS------GFAYQHYFHTDTG  765
             ELK+AL  Y++S G+G  T+D   A ++LL KL+++  +++      GF Y  +      
Sbjct  699   ELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----EN  754

Query  766   EKLNILKNAVNYV-ATPTIKDRFLTEVHALSQAHSLAVPHPQALAASETISFFQAIQASL  824
             +  ++L +A NY+ +    K R++  V AL++A SL     +A +    ++F+ A++ ++
Sbjct  755   NPQHVLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAI  814

Query  825   RKLESSGDGGGLNNQDIETAIRQVVDQALVSDAVINIFDEAGIKNPDISIISAEFMAEVR  884
              KL +++    +++ + ++ + +++D+A+V+ +V ++F  AG+ +P+I+++S EF+ EVR
Sbjct  815   IKLTTTDK--KFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVR  872

Query  885   GMEHQNLAVELLQKLLKDEVKTRSRTNIVQSRKLSEMLEDALRRYRNQVISVTDVLEALL  944
              M ++NLAVELL+KLL+D + +R+  N+VQ +K S+ L   L RY N+ I  ++V+E L+
Sbjct  873   EMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELI  932

Query  945   ELAKDTKAADARGEELGLEPFELAFYDALSQNQSAQDIMGVDKLRELAIVLVERIRQNAS  1004
             ++AK+ +AA AR++ LGL+P E+AFYDAL++N+SA   +G + L+ LAI +  ++R++++
Sbjct  933   QMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTT  992

Query  1005  IDWNLKESVRSRMKIAVKRLLRKYGYPPDMEALAMELVLEQAKVFTE  1051
             +DW+++ESVR+R++I V++ L KY YPPD    A+EL+L QA V ++
Sbjct  993   VDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

151) APECO78_16850 in NC_020163


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  709 bits (2682),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1083 (46%), Positives = 753/1083 (70%), Gaps = 56/1083 (5%)

Query  4     MTESDIEVMAIEHLQGLGYEYVYGPDIEPSGINPLR-SYQQVILEDKVRTALQRINPHLS  62
             ++E D+E +++  + G G E + GPDI P G NPLR S+++V+L    R  L+ +NPHL+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63    EQKCEEALKQVMQISSPDLMANNLTFHRLLTEGINIEVSKDGNTQGELASLIDFNDPTNN  122
                 +E + ++ +  SPD++ +N +FH+LL  G+ +E  +D++   + A L+DFN+P NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   AFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
              F V+NQ++I   ++ RRPD+I +INGLP+ VIELK+++D NA + +A+NQ++TY+N+I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   GLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
             +LF  N   VISDG +A+ G+++AD  R++ WKT +   +    + QLE +++G++N   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   LLDIIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASAVNADSPSA  302
             LLD IR FI+FE+    D+K     R +KK+AAYHQ+ AV  AV +TI AS+ +      
Sbjct  242   LLDYIRYFILFES----DGK-----RLIKKIAAYHQFHAVREAVNATIVASTGKF-----  287

Query  303   EVALRQQGRNSKDLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIV--LALDNPTVVV  360
              ++LR          +  K G +KAGVVWHTQGSGKS+SM  Y+GK++    ++NPT+VV
Sbjct  288   -LPLR----------SNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVV  336

Query  361   ITDRNDLDDQLFGTFSSATQLLRQTPKQANNREELKEYLRV-ASGGVVFTTIQKFQPDDG  419
             +TDRNDLD+QL+ TF  A +LL+Q P+QA+NR++L+E L    SGG++FTT+QKF P DG
Sbjct  337   VTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDG  396

Query  420   SNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDALPN  479
              +    L+ R NIVVI+DEAHRSQYG+SA      D +G        YG+AK MRDALPN
Sbjct  397   EQAHPALNLRDNIVVISDEAHRSQYGLSA----TLDKDGAYK-----YGYAKHMRDALPN  447

Query  480   ATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEGRQ  539
             A+++GFTGTP+   D +T AVFG+YV IYDI +AV+DGATV I+YESRLAK+ +++E  +
Sbjct  448   ASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELE  507

Query  540   -LIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADHG  598
              L  + DD  +++E    +K ++ W+R+E L+GS  RIK +AAD+V HF  R  + + +G
Sbjct  508   ALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAAR--NATMNG  565

Query  599   KGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKER  658
             K+MIV+MSR I   LY+ ++AL+PEWHS+D++ G IK++MT+SA+D  ++  H   K+ +
Sbjct  566   KAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTK  625

Query  659   QVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDK  718
             + L  R KD +D LK+VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV+KDK
Sbjct  626   KRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDK  685

Query  719   IGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMM------H  772
              GGLVVDY+GIA++LK+AL  Y+D+ G+G+ +    +A +++ EKL++++GM        
Sbjct  686   PGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDP  745

Query  773   GYDYKAYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAME  832
             G+DY A+     +Q+  ++L++ N ILGLD+  GK R++  V AL++A +L +  D A  
Sbjct  746   GFDYSAF--ENNPQH--VLLDAANYILGLDD--GKKRYFDVVLALNKAWSLCSTLDEAKP  799

Query  833   AAPEVAFFQAVKARLNKFTENSDGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQ  892
                E+AF+ AVK  + K+T       + +++SL  R+   +D+A+V+  V D+F  AG++
Sbjct  800   LQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRI---LDNAIVATGVDDVFALAGLD  856

Query  893   KPDISVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAING  952
             KP+I++LS+EFL+E+++  +RN+A+E L KLL+D I  R+N+++ Q KK  D L + +  
Sbjct  857   KPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLR  916

Query  953   YQNKVLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekekl  1012
             Y+N+ + +A+VI+ELI++AK +Q + +    L L++ E AFY A+A+N+SA   +  E L
Sbjct  917   YNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETL  976

Query  1013  relAVVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETVLKQAEL  1072
             + LA+ +T  +R++ ++DW V+E+ RA++R++V++ L KY YPPD +L A E +LKQAE+
Sbjct  977   KKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

Query  1073  LAG  1075
             ++ 
Sbjct  1037  VSN  1039

152) EcE24377A_2911 in NC_009801


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  703 bits (2659),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1083 (46%), Positives = 749/1083 (70%), Gaps = 56/1083 (5%)

Query  4     MTESDIEVMVIEHLQGLGYEYVYGPDIEPSGINPLR-SYQQVILEDKVRIALQRLNPHLS  62
             ++E D+E + +  + G G E + GPDI P G NPLR S+++V+L    R  L+ LNPHL+
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63    EQKCEEALKQVMQISTPDLMANNLAFHRLLTEGINIEVSKDGNTQGELACLIDFNDPTNN  122
                 +E + ++ +  +PD++ +N AFH+LL  G+ +E  +D++   + A L+DFN+P NN
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123   EFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
              F V+NQ++I   ++ RRPD+I +INGLP+ VIELK+++D NA + +A+NQ++TY+N+I+
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  183   VLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
              LF  N   VISDG +A+ G+++AD  R++ WKT +   +    + QLE +++G++N   
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  243   LLDVIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASGVNADSPSA  302
             LLD IR FI+FE+    D+K     R +KK+AAYHQ+ AV  AV +TI AS  +      
Sbjct  242   LLDYIRYFILFES----DGK-----RLIKKIAAYHQFHAVREAVNATIVASTGKF-----  287

Query  303   EVALRQQGRNSKVLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIV--LALNNPTVVV  360
              ++LR          +  K G +KAGVVWHTQGSGKS+SM  Y+GK++    +NNPT+VV
Sbjct  288   -LPLR----------SNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVV  336

Query  361   ITDRNDLDDQLFGTFSSATQLLRQTPKQADNREELKEYLRV-ASGGVVFTTIQKFQPNDG  419
             +TDRNDLD+QL+ TF  A +LL+Q P+QA NR++L+E L    SGG++FTT+QKF P DG
Sbjct  337   VTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDG  396

Query  420   SNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDALPN  479
              +    L+ R NIVVI+DEAHRSQYG+SA      D +G        YG+AK MRDALPN
Sbjct  397   EQAHPALNLRDNIVVISDEAHRSQYGLSA----TLDKDGAYK-----YGYAKHMRDALPN  447

Query  480   ATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEGRQ  539
             A+++GFTGTP+   D +T AVFG+YV IYDI +AV+DGATV I+YESRLAK+ +++E  +
Sbjct  448   ASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELE  507

Query  540   -LIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADHG  598
              L  + DD  +++E    +K ++ W+R+E L+GS  RIK +AAD+V HF  R  + + +G
Sbjct  508   ALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAAR--NATMNG  565

Query  599   KGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKER  658
             K+MIV+MSR I   LY+ ++AL+PEWHS+D++ G IK++MT+SA+D  ++  H   K+ +
Sbjct  566   KAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTK  625

Query  659   QVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDK  718
             + L  R KD +D LK+VIVRDMWLTGFDAP  HT+YIDKPM+GHNLMQAIARVNRV+KDK
Sbjct  626   KRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDK  685

Query  719   IGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMM------H  772
              GGLVVDY+GIA++LK+AL  Y+D+ G+G+ +    +A +++ EKL++++GM        
Sbjct  686   PGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDP  745

Query  773   GYDYKAYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAME  832
             G+DY A+     +Q+  ++L++ N ILGLD+  GK R++  V AL++A +L +  D A  
Sbjct  746   GFDYSAF--ENNPQH--VLLDAANYILGLDD--GKKRYFDVVLALNKAWSLCSTLDEAKP  799

Query  833   AAPEVAFFQAVKARLNKFTENSDGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQ  892
                E+AF+ AVK  + K+T       + +++SL  R+   +D+A+V+  V D+F  AG++
Sbjct  800   LQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRI---LDNAIVATGVDDVFALAGLD  856

Query  893   KPDISVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAING  952
             KP+I++LS+EFL+E+++  +RN+A+E L KLL+D I  R+N+++ Q KK  D L + +  
Sbjct  857   KPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLR  916

Query  953   YQNKVLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekekl  1012
             Y+N+ + +A+VI+ELI++AK +Q + +    L L++ E AFY A+A+N+SA   +  E L
Sbjct  917   YNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETL  976

Query  1013  relAVVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETILKQAEL  1072
             + LA+ +T  +R++ ++DW V+E+ RA++R++V++ L KY YPPD +L A E ILKQAE+
Sbjct  977   KKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

Query  1073  LAG  1075
             ++ 
Sbjct  1037  VSN  1039

153) Jden_2251 in NC_013174


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  695 bits (2627),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1053 (45%), Positives = 736/1053 (70%), Gaps = 35/1053 (3%)

Query  3     VFNENTVELAALEYFAELGYRTLHGPDIAPGEPGAERDSYEEVFLWGRLRDAIRRINPGT  62
             +++E+ +E  +L  FA  G   LHGPDIAP+   + R S+++VFL+  +R  +  +NP  
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  63    SPALVDEAIKRVRRAESQSPIDENYRLHQLITEGVPVEHRDADGALRTTRLWLVDFERPE  122
             +++L DE I R+ R+ES   +  N  +H+L+  GVPVE +  D  ++ T L L+DF++PE
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTAL-LMDFNHPE  119

Query  123   NNDWVAINQFTIVENGKNRRPDvlvlvnglplallelKNPTAEHATLKSAWNQVQTYRQD  182
             NN    +NQ +I    + RRPDV+  +NGLP+A++ELK+P+  +A + +A NQ+QTY+++
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNE  179

Query  183   IPSVFVPNAVTVITDGTSAAMSSYAGAFEHYAPWKTI---EGREVVSDGPALEVLIKGVF  239
             I+ +F+ N   VI+DG +A ++S ++  E++ PWKTI   +++ ++ +   LE +++G F
Sbjct  180   ISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEH--QLENVVNGFF  237

Query  240   EPKRFLDLLQNFIVFSDETATDKATGQPTRLLVKRVAKYHQYWAVNAAVESTVQAS----  295
             +   +LD ++ FI+F  +           + L+K++A YHQ+ AV  AV++T+ AS    
Sbjct  238   NRELLLDYIRYFILFESDG----------KRLIKKIAAYHQFHAVREAVNATIVASTGKF  287

Query  296   ---RPD---GDRRGGVVWHTQGSGKSFEMVFYAAKIMRDSRMANPTLVFITDRNDLDDQL  349
                R++   G +++GVVWHTQGSGKS+ M  YA+K+++++ M NPT+V +TDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  350   FGETFAPAR-ILPETPVQATTRTDLRSKLK-RASGGIVFTTLQKFAPGEDGDANPVLTDR  407
             +  TF  A+ +L + P QA+ R +LR  L  R SGGI+FTT+QKFAP ++ +A+P L  R
Sbjct  348   YT-TFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLR  406

Query  408   CNVVVVADEAHRSQYGFGETLDRHGRLRAGLAKHMRDALPGATYLGFTGTPIESGDKSTR  467
              N+VV++DEAHRSQYG++ TLD++G  + G AKHMRDALP A+++GFTGTP+ S DK TR
Sbjct  407   DNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  468   SVFGDYVDVYDLTRAVEDGATVKIFYESRlakidlsdddlaaldeladeitetveedaat  527
             +VFGDYV +YD+  AV+DGATV I+YESRLAK+DL++++L AL    D++ E  E D   
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKE  526

Query  528   aaKSRWSRLEAIVGADSRLDLIARDIVEHWEKRREALFGKGMIVTMSRRIAVRLYEKIVA  587
              +K+ WSRLE +VG+++R+  +A D+V H   R  ++ GK+MIV+MSR I VRLY+ +VA
Sbjct  527   KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVA  586

Query  588   LRPDWHSDDPAKGKIKVVMTGSAADPAEFQPHIYPKDVRKDLKLRAKNPDDELELVIVRD  647
             LRP+WHS+D  KG IK++MTGSA+D  ++QPHIY K+ +K L  R K+ +D L +VIVRD
Sbjct  587   LRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRD  646

Query  648   MWLTGFDAPSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQAALQE  707
             MWLTGFDAP  HTMY+DK M+G  LMQAIARVNR F+DKPGGL+VDYIG+  +L+ AL+ 
Sbjct  647   MWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKT  706

Query  708   YS-PSDRDQAGVPIDEMVAVMLEKHDIIRGLLHGVDYDSSPTLTASQRLAEYA--KVLDF  764
             Y+ + +++Q+ +   +  AV+LEK D+I+G++     D++   +A +  ++       ++
Sbjct  707   YTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANY  766

Query  765   VMADPDRTKRFNDQVlalakafalagaRDEAAAIRDDVRLFTDVRAAILKIQNPDSGRGG  824
             +++  D  KR+ D VLAL KA +L ++ DEA +++ ++ +++ V+ AI+K+   D   + 
Sbjct  767   ILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQ  826

Query  825   SGAVEIDTALGQLLNEAVAANQVVDIYKLAGVETPELSILSDEFLDSLADKDKPNLQMGL  884
             S   E ++ L+++L++A+ A  V D++ LAG++ P++++LSDEFL+ + +  + NL + L
Sbjct  827   S---EKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  885   LRRLLNDQIRTVQRTNLVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQK  944
             L +LLND I++    N+VQ +K+S+ L   + RY NR++ TA++I EL+++AK+ +    
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  945   RNEELGLSAAEVALYDAIAQNDAAVMHMGDETLKKIAVDLVWAVRTSVVIDWDQKESVRA  1004
             R++ LGL++ E+A+YDA+A+N++AV ++GDETLKK+A+++   +R S  +DW+ +ESVRA
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1005  AMRSKVRRLLAKYDYPPDAEKKAIELVLEQAEL  1037
              +R  VR+ L KY YPPD    A+EL+L QAE+
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

154) XOO3452 in NC_006834


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/898 (50%), Positives = 652/898 (73%), Gaps = 41/898 (4%)

Query  1     MQTYKQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGKQVLPKGQPELPTL  60
             +QTYK++I+ LF  N  LV SDG  AR+GSL+AD ERF+PW+T    +  P  + +L  +
Sbjct  173   LQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENV  232

Query  61    IEGVFAPQRFLELLRWFTAFGETGGGLVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPA  120
             ++G F  + +L+ +R F  F   G  L+K IA+YHQFHAV +AV++TI AS        +
Sbjct  233   VNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVAS-------TG  285

Query  121   KYGSASVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDLD  180
             K+ +   + +P G ++AGV+WHTQGSGKS+ M  YAG+L+Q++ M NPT+VV+TDRNDLD
Sbjct  286   KFLPLRSNIKP-GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLD  344

Query  181   DQLFGTFSMCKALLRQTPVQADSREDLARLLD-RASGGVIFTTLQKFGEVDA-----PLT  234
             +QL+ TF   K LL+Q P QA +R++L  +L  R SGG+IFTT+QKF+ +D+     +L 
Sbjct  345   GQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALN  404

Query  235   ARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPIEATDV  294
              R N+VVI+DEAHRSQYGL A LD K G   YG+AK MRDALPNASF+GFTGTP+ + D 
Sbjct  405   LRDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDK  463

Query  295   NTPALFGHYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFEWEGTD  354
             +T A+FG+Y+ +YDI  AV+DGATVPIYYESRLA+++L+++E   L ++V+ L E E TD
Sbjct  464   DTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETD  523

Query  355   EKEKLKGRAAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYNE  414
             +KEK KG  + +E+LVGS+ R+  VA DLV HF  R A+++GKAM V MSR+ICV LYN 
Sbjct  524   QKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNA  583

Query  415   IVKLRPHWHSDDDTLGAVKIVMTGAASDPTQWQQHIGNkarrdalarrakdpadpLKLVI  474
             +V LRP+WHS+D   G +KI+MTG+ASD  + Q HI NK  +  L  R KD  DPLK+VI
Sbjct  584   LVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVI  643

Query  475   VRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSA  534
             VRDMWLTGFDAP  HTMY+DKPM+GH LMQAIARVNRVF+DKP+GL+VDYIGIA++LK A
Sbjct  644   VRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQA  703

Query  535   LAQYS-PQDKQNTGIDEAQAIAVMREKYEVVRDMY------HGFDYLTALNGTPQQRLTM  587
             L  Y+ +++K +T ID  +A+AV+ EK +V+++M+       GFDY +A++  PQ+   +
Sbjct  704   LKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENNPQH---V  759

Query  588   MAGAIEWILDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVG  647
             + +A + IL+ ++              +++RY D VLAL+ A +L S+ DEA +++ E++
Sbjct  760   LLDAANYILGLDD--------------GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELA  805

Query  648   FFQAIREALVK-SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISILSD  706
             F+ A++ A++K ++T+  ++  E++  + +I+  A+V+T + D++  AG++ P+I++LSD
Sbjct  806   FLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSD  865

Query  707   EFLAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTA  766
             EFL EV+ M ++NLA+E L KL+NDGI++R++ N+V+ K +S+RL   + RY+  AI TA
Sbjct  866   EFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETA  925

Query  767   EVLQELICIAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHELLV  826
             +V++ELI +AK+++AA AR++  GL+ DE+AFYDALAEN+SAV+ +GD++LK +A E+  
Sbjct  926   QVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTA  985

Query  827   SLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAGWSA  884
              L+ S++VDW  R+S RAR+R+LV++ L KY YPPD    AV  +L+QAE +S +W+A
Sbjct  986   QLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

155) hsdR in NC_015697


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  685 bits (2591),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/1055 (43%), Positives = 697/1055 (67%), Gaps = 39/1055 (3%)

Query  6     LLESDVENLALDTLQKVGYDVYKSPSTTSPNPEIDKMRNNDHAVAVLTEKLQASLKKLNP  65
             L E D+E+L+L+ +   G +V  +P  ++     + +R + H V  L   ++  L  LNP
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGK--NPLRISFHDV-FLRPIFRKQLETLNP  58

Query  66    GYPEEIYKEALRQLTRLADNPDMMVNNHYFHKLLIEGIRVKTTVNGENRTEVLYPIDFDH  125
               P  ++ E + ++TR +++PD++V+N  FH LL+ G+ V    ++    +    +DF+H
Sbjct  59    HLPASLFDEIISRITR-PESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNH  117

Query  126   VGNNQFVATNQFTFKGSHE-RRPDTTIFINGLPVVTFEFKDASNPNVSIENAYRQLQTYK  184
               NN+F   NQ ++ G+ + RRPD   +INGLP+  +E+K +S+ N  I  A+ QLQTYK
Sbjct  118   PENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYK  177

Query  185   AEIPEYLKYNEILIASDGINSRAGSLTAGFDRFMRWRAPKNINVGDDLE--LETMIKYML  242
              EI++ +  NE L+ SDG N+R GSLTA+ +RF+ W++  N +    LE  LE +++  +
Sbjct  178   NEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFF  237

Query  243   TPKDLLNLIENFIIFETDGDNTIKILAAYHQYYMVNKAVKAAK----------RTMADPN  292
                 LL+ I  FI+FE+DG   IK +AAYHQ+  V  AV+A+           R+   P 
Sbjct  238   NRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPG  297

Query  293   DKRIGVVWHTTGSGKSLSMVFFASIVARK--LNNPTMLVINDRNDLDDQLFDTFAAAHEF  350
              K+ GVVWHT GSGKS+SM  +A+ + ++  +NNPT++V+ DRNDLD+QL+ TF  A ++
Sbjct  298   SKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDL  357

Query  351   LRQAPEHAESRDELRKFMD-KQAGEIIFSTIQKFSPDFESGETEMPVLTNRSDVIVIADE  409
             L+Q P++A +RD+LR  +  +++G IIF+T+QKF+P    GE   P L  R +++VI+DE
Sbjct  358   LKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP--LDGEQAHPALNLRDNIVVISDE  415

Query  410   AHRTQYGLKAKFTNNGL-RYGFAKYLRDALPNASFIGFTGTPISTADKSTVAVFGNYIDV  468
             AHR+QYGL A + ++G  +YG+AK +RDALPNASF+GFTGTP+S+ DK T AVFG+Y+ +
Sbjct  416   AHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSI  475

Query  469   YDITQAVNDHATVKIYYESHVFPLKLKSDAQAKYQQLLKEANLDDDPNLEENTRRNREFS  528
             YDI +AV+D ATV IYYES++  L L+ +        + +  L +D + +++ + + + S
Sbjct  476   YDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDD--LVEDEETDQKEKTKGDWS  533

Query  529   SLEALAGAQPRLESIAKHFVNHFEARQKETFGKAMIVEMSRRNAVRLYNQIIKLRPEWDS  588
              LE L G++PR+  +A ++V+HF AR+    GKAMIV MSR   VRLYN ++ LRPEW+S
Sbjct  534   RLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHS  593

Query  589   DDLNKGKIKVVMTSSAADGPEMAKFQTSKADRRVLQKRMKDNNDELQIVIVVDMWLTGFD  648
             +D++KG IK++MT+SA+D  ++     +K  ++ L+ R KD ND L+IVIV DMWLTGFD
Sbjct  594   EDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  653

Query  649   VPSMNTMYIDKPMKGHNLIQAIARVNRVFKDKDSALIVDYIGIAENLKEALNVYS-TEDQ  707
              P  +TMYIDKPM+GHNL+QAIARVNRVFKDK ++L+VDYIGIA++LK+AL+ Y+ + ++
Sbjct  654   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  713

Query  708   GQVGINMQKALALLKEKYDIITNDFL-----YGVDYSGFDSEDGAVRLKITRRVANEILG  762
             GQ  I+ + A+A+L EK D+I   F       G DYS+F+++   V L      AN ILG
Sbjct  714   GQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLD----AANYILG  769

Query  763   EDEETQQKFLDVVTELQKAYALTSTQPEAQAYGKEIAFFKTVKVFIQKLKQPTTPVGSGK  822
              D + +++++DVV  L+KA +L ST  EA++  KE+AF+ +VKV I KL       + + 
Sbjct  770   LD-DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSE  828

Query  823   HTDVKYQMQQLLDQSIISEPNVDIYNELGIKRQSIDLISDEFLQKVNSMPEQDVAITLLE  882
                +   + ++LD++I++    D++   G+ + +I+L+SDEFL+ V  MP++++A+ LLE
Sbjct  829   KNSL---LSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  883   KLLKGKIKAMMKSNKVTSEKFEDMLQKSIDEYNQRGITSEIVIRKLIDMAKKINAEQEKG  942
             KLL++ I A  ++N V   K+ D L+  +  YN+R+I +  VI  LI+MAK ++A   ++
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  943   KDLGLSQEEIAFYDALADHKKAVEVLGEKKLHLIAQELVKLVKEEAGVDWEKRRNIQAKM  1002
               LGL+ +EIAFYDALA++  AV  LG+  L  +A E+   ++  + VDW+ R +++A++
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  1003  RVAVKHLLRKYGYPPDIAPEAVNTVVEQAELMATN  1037
             R+ V+  L KY YPPD A +AV+ ++ QAE+++ +
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

156) LRI_1098 in NC_021494


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  682 bits (2580),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/1015 (44%), Positives = 690/1015 (68%), Gaps = 45/1015 (4%)

Query  48    QPILKGQLENALRKLNPGLDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTS  107
             +PI++ QLE     LNP L   ++ + I ++   ++SPD++++N  +H+L+++G  V   
Sbjct  46    RPIFRKQLET----LNPHLPASLFDEIISRITR-PESPDIVVSNKAFHHLLLSG--VPVE  98

Query  108   IKGEDRTI--TLYPIDFKNVDSNTFVATNQFTMKQGEHERRPDITLFINGLPLVTFELKN  165
              K +D+ I  T   +DF++ ++N F   NQ ++    + RRPD+  +INGLP+  +ELK+
Sbjct  99    YKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKS  158

Query  166   PANANVGIQQAFAQFSTYKEEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN  225
             P++ N +I  AF Q+ TYK+EIS     NE L++SDG NAR GSLTA+ +RF+ W+   N
Sbjct  159   PSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISN  218

Query  226   VDIDDSMME--LEVLIKYMLTPSDLLNIIQNFILFESDGDKTIKILAAYHQYYMVNKAVK  283
              D D +++E  LE +++  +    LL+ I+ FILFESDG + IK +AAYHQ+  V  AV+
Sbjct  219   ED-DKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVN  277

Query  284   -----RTSKVLA-----DPDDKRIGVVWHTTGSGKSLSMVFYSGIVARK--LGNPTILVI  331
                   T+K L+      P+ K+ GVVWHT GSGKS+SM  Y+G + ++  + NPTI+V+
Sbjct  278   ATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVV  337

Query  332   NDRNDLDDQLFGTFAAAHEYLQQNPDHAESRGEVRKYMS-KNSGGIVFSTIQKFSPNFDA  390
              DRNDLD+QL+ TF  A + L+Q+P++A +R+++R  ++ ++SGGI+F+T+QKF+P +D+
Sbjct  338   TDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP-LDG  396

Query  391   GEEHMPILTNRSNVIVIVDEAHRSQYGMQAKLTDNGI-RYGYAKYLREALPNASFIGFTG  449
              + H P L  R N++VI DEAHRSQYG+ A L  +G  +YGYAK +R+ALPNASF+GFTG
Sbjct  397   EQAH-PALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTG  455

Query  450   TPINTEDKSTVAMFGNYIDVYDITQAVNDHATVRIYYESHVFPLKLKDNAIDEYQKLIKE  509
             TP+++EDK T A+FG+Y+ +YDI +AV+D ATV IYYES++  L L+++ ++     + +
Sbjct  456   TPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDD  515

Query  510   AGINDDPNLRETERRNRAFTRLEALAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMS  569
                +++ + +E  + ++  +RLE L G+ PR+ ++A ++V HF +R+    GK+MIV MS
Sbjct  516   LVEDEETDQKEKTKGDW--SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMS  573

Query  570   RQNAVKLYNEIAKLRPEWINDDIHKGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMK  629
             R+  V+LYN +  LRPEW ++D++KG IK+IMT++ASD  ++     +KQ +  L+ R K
Sbjct  574   RDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFK  633

Query  630   DNDDELQIVIVVDMWLTGFDVPSMNTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDY  689
             D +D L+IVIV DMWLTGFD P  +TMYIDKPM+GHNL+QAIARVNRVFK+K +GL+VDY
Sbjct  634   DLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDY  693

Query  690   IGIADALRFALNVYTKD-DQGKVGINVDRALMLLKEKYDIIKEDFL-----YGIDYSEFD  743
             IGIA+ L+ AL+ YT   ++G+  I+   A+ +L EK D+I   F       G+DYS F+
Sbjct  694   IGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFE  753

Query  744   SDDSQTRQKAVTRVVNELAAEDDETKQKFFDVVTELQKAYALVSTQPEAQDLSAEIAFFK  803
             ++  +    A   ++       D+ K+++FDVV  L+KA +L ST  EA+ L  E+AF+ 
Sbjct  754   NNPQHVLLDAANYILGL-----DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  804   TVKVFLTKLEAPDDPDDSKEIHSSVDYRMQQLLDQSIISEPNVDIYRDLGLERPNLDLIS  863
             +VKV + KL +     D K  +S  +  + ++LD++I++    D++   GL++PN++L+S
Sbjct  809   AVKVAIIKLTTT----DKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLS  864

Query  864   EQFLEKVNEITEKDLAITLLEKLLKGQVKAYQKTNIVKGKKFEELLQESIDDYNKRGITS  923
             ++FLE V E+ +++LA+ LLEKLL++ + A  + N+V+ KK+ + L+  +  YN+R+I +
Sbjct  865   DEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIET  924

Query  924   EIVIRKLIDMAKEINKEQQEGKNLGLSKEEVAFYDALADHEKAVQELGEEKLHLIAAELV  983
               VI  LI+MAKE++     +  LGL+ +E+AFYDALA++E AV+ELG+E L  +A E+ 
Sbjct  925   AQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVT  984

Query  984   KTVKQQSGVDWERRSNVRAKMRVAVKHLLRKYGYPPDIAPDAIKTVVKQAEQMAS  1038
               +++ + VDW+ R +VRA++R+ V+  L KY YPPD A DA+  ++KQAE +++
Sbjct  985   AQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

157) hsdR3 in NC_022362


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

158) hsdR3 in NC_022352


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

159) hsdR3 in NC_022351


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

160) hsdR3 in NC_022353


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

161) CJJ81176_1534 in NC_008787


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

162) hsdR in NC_017279


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

163) hsdR in NC_002163


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

164) hsdR in NC_018521


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

165) A911_07460 in NC_018709


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1054 (43%), Positives = 723/1054 (69%), Gaps = 57/1054 (5%)

Query  10    DLEQFVISSLLEHGWCY----------EKPVRAT-DEVLLETSLVNALCRLNPQLDLSKA  58
             DLEQ+ ++ +  +GW             +P+R + ++V+L   + + L  LNP+L  S  
Sbjct  6     DLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLF  65

Query  59    NEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIA  118
             +EI   +   +   ++ SN  FH  L++GV ++  +D+    D   L+DFN++ NN F  
Sbjct  66    DEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTV  125

Query  119   TNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSIFT  178
              NQ++I+ +K+ + PDV+ YING+P+ ++ELKSPSD NA I +A+NQ++TYK+ I+ +F 
Sbjct  126   VNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFI  185

Query  179   YNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDI  238
              N   VISDGY AR GS++AD  RF++WK+    +  P    ++  +++G +N   LLD 
Sbjct  186   CNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDY  245

Query  239   ICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASS----------KD  288
             I  FI+FE +         + +  KKIA YHQ+ AV  A++ TI AS+          K 
Sbjct  246   IRYFILFESD---------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKP  296

Query  289   GDKKGGVVWHTQGSGKSLSMVFYSAKAIK--ALNNPTILLITDRNDLDDQLFGTFASCAN  346
             G KK+GVVWHTQGSGKS+SM  Y++K ++   +NNPTI+++TDRNDLD+QL+ TF    +
Sbjct  297   GSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKD  356

Query  347   LLRQEPKQANDKEHLKELLRV-ASGGVVFTTIQKFSP-ENDNVFECLSLRDNIIVIADEA  404
             LL+QEP+QA+++++L+E+L    SGG++FTT+QKF+P + ++    L+LRDNI+VI+DEA
Sbjct  357   LLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEA  416

Query  405   HRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPA  464
             HR+QYG+ A +     K G        YG+AK +RDALPNA+++GFTGTP+ S+D +T A
Sbjct  417   HRSQYGLSATL----DKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  465   VFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEG----KRLVNELDEKLENQDSQK  520
             VFG+Y+ IYDI  AV+DGATV+IYYESRLAK++L++E        V++L E  E ++ +K
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  521   AKA--TKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRSVAIKLYDEIIKI  578
             +K+  ++LE LVGS +R+KQ+A D+VKHF +R++ + GK+MIV++SR + ++LY+ ++ +
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  579   RPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDM  638
             RP WHS+++  G IK++MT+S+SD  ++  H  +K  K+ L  R ++++D LK+VIV DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  639   WLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFY  698
             WLTGFD P  HT+YIDKPM+GHNLMQAIARVNRV+KDKP+GLVVDY+GIA++LK+AL  Y
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  699   SESGGKGDIITTQEDAVKVMIEKLEIVEQMLPN-----DYEKYFELDTGAKLEYILDVEE  753
             ++S GKG+      DA  V++EKL++++ M+++     +++ Y  ++  ++ + +LD  +
Sbjct  708   TDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFD-YSAFENNPQ-HVLLDAAN  765

Query  754   HILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKARFLKFAKenen-e  812
              IL+ +DGK+R++    AL+KA ++    + A ++++ +AF+ A+K  ++K++  + +  
Sbjct  766   YILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFS  825

Query  813   nllnQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLK  872
             +  +++L+ +++D+AIV++ V D+F  +G+ KP+I++LSDEFL EV++M ++NLA E+L 
Sbjct  826   QSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLE  885

Query  873   KILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEA  932
             K+LND I AR + ++ + KK ++ L   + +YNN+ I +++ ++ELI+M+K + +     
Sbjct  886   KLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARD  945

Query  933   KKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQIIKNNVSIDWMIKEnvrarl  992
               LGL+  E AFY ALA N+   + LG+E L  L  E+   ++++ ++DW ++E+VRARL
Sbjct  946   DALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARL  1005

Query  993   rvavkrvlnkYGYPPDMQQLAIDGVLAQAEILAK  1026
             R+ V++ L KY YPPD    A++ +L QAE++++
Sbjct  1006  RILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

166) Lreu_0874 in NC_009513


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2568),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1015 (43%), Positives = 689/1015 (68%), Gaps = 45/1015 (4%)

Query  48    QPILKGQLENALRKLNSGLDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTS  107
             +PI++ QLE     LN+ L   ++ + I ++   ++SPD++++N  +H+L+++G  V   
Sbjct  46    RPIFRKQLET----LNPHLPASLFDEIISRITR-PESPDIVVSNKAFHHLLLSG--VPVE  98

Query  108   IKGEDRTI--TLYPIDFKNVDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKN  165
              K +D+ I  T   +DF++ +NN F   NQ ++    + RRPD+  +INGLP+  +ELK+
Sbjct  99    YKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKS  158

Query  166   PANANVGIQQAFAQFSTYKEEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN  225
             P++ N +I  AF Q+ TYK+EIS     NE L++SDG NAR GSLTA+ +RF+ W+   N
Sbjct  159   PSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISN  218

Query  226   VDIDDSMME--LEVLIKYMLTPSDLLNIIQNFILFESDGDKTIKILAAYHQYYMVNKAVK  283
              D D +++E  LE +++  +    LL+ I+ FILFESDG + IK +AAYHQ+  V  AV+
Sbjct  219   ED-DKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVN  277

Query  284   -----RTSKVLA-----DPDDKRIGVVWHTTGSGKSLSMVFYSGIVARK--LGNPTILVI  331
                   T+K L+      P+ K+ GVVWHT GSGKS+SM  Y+G + ++  + NPTI+V+
Sbjct  278   ATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVV  337

Query  332   NDRNDLDDQLFGTFAAAHEYLQQNPDHAESRGEVRKYMS-KNSGGIVFSTIQKFSPNFDA  390
              DRNDLD+QL+ TF  A + L+Q+P++A +R+++R  ++ ++SGGI+F+T+QKF+P +D+
Sbjct  338   TDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP-LDG  396

Query  391   GEEHMPILTNRSNVIVMVDEAHRSQYGMQAKLTDNGI-RYGYAKYLREALPNASFIGFTG  449
              + H P L  R N++V+ DEAHRSQYG+ A L  +G  +YGYAK +R+ALPNASF+GFTG
Sbjct  397   EQAH-PALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTG  455

Query  450   TPINTEDKSTVAMFGNYIDVYDITQAVNDHATVRIYYESHVFPLKLKDNAIDEYQKLIKE  509
             TP+++EDK T A+FG+Y+ +YDI +AV+D ATV IYYES++  L L+++ ++     + +
Sbjct  456   TPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDD  515

Query  510   AGINDDPNLRETERRNRAFTRLEALAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMS  569
                +++ + +E  + ++  +RLE L G+ PR+ ++A ++V HF +R+    GK+MIV MS
Sbjct  516   LVEDEETDQKEKTKGDW--SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMS  573

Query  570   RQNAVKLYNEIAKLRPEWINDDIHKGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMK  629
             R+  V+LYN +  LRPEW ++D++KG IK+IMT++ASD  ++     +KQ +  L+ R K
Sbjct  574   RDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFK  633

Query  630   DNDDELQIVIVVDMWLTGFDVPSMNTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDY  689
             D +D L+IVIV DMWLTGFD P  +TMYIDKPM+GHNL+QAIARVNRVFK+K +GL+VDY
Sbjct  634   DLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDY  693

Query  690   IGIADALRFALNVYTKD-DQGKVGINVDRALMLLKEKYDIIKEDFL-----YGIDYSEFD  743
             IGIA+ L+ AL+ YT   ++G+  I+   A+ +L EK D+I   F       G+DYS F+
Sbjct  694   IGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFE  753

Query  744   SDDSQTRQKAVTRVVNELAAEDDETKQKFFDVVTELQKAYALVSTQPEAQDLSAEIAFFK  803
             ++  +    A   ++       D+ K+++FDVV  L+KA +L ST  EA+ L  E+AF+ 
Sbjct  754   NNPQHVLLDAANYILGL-----DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  804   TVKVFLTKLEAPDDPDDSKEIHSSVDYRMQQLLDQSIISEPNVDIYRDLGLERPNLDLIS  863
             +VKV + KL +     D K  +S  +  + ++LD++I++    D++   GL++PN++L+S
Sbjct  809   AVKVAIIKLTTT----DKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLS  864

Query  864   EQFLEKVNEITEKDLAITLLEKLLKGQVKAYQKTNIVKGKKFEELLQESIDDYNRRGITS  923
             ++FLE V E+ +++LA+ LLEKLL++ + A  + N+V+ KK+ + L+  +  YN R+I +
Sbjct  865   DEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIET  924

Query  924   EIVIRKLIDMAKEINKEQQEGKNLGLSKEEVAFYDALADHEKAVQELGEEKLHLIAAELV  983
               VI  LI+MAKE++     +  LGL+ +E+AFYDALA++E AV+ELG+E L  +A E+ 
Sbjct  925   AQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVT  984

Query  984   KTVKQQSGVDWERRSNVRAKMRVAVKHLLRKYGYPPDIAPDAIKTVVKQAEQMAS  1038
               +++ + VDW+ R +VRA++R+ V+  L KY YPPD A DA+  ++KQAE +++
Sbjct  985   AQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

167) LAR_0819 in NC_010609


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  679 bits (2568),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1015 (43%), Positives = 689/1015 (68%), Gaps = 45/1015 (4%)

Query  48    QPILKGQLENALRKLNSGLDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTS  107
             +PI++ QLE     LN+ L   ++ + I ++   ++SPD++++N  +H+L+++G  V   
Sbjct  46    RPIFRKQLET----LNPHLPASLFDEIISRITR-PESPDIVVSNKAFHHLLLSG--VPVE  98

Query  108   IKGEDRTI--TLYPIDFKNVDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKN  165
              K +D+ I  T   +DF++ +NN F   NQ ++    + RRPD+  +INGLP+  +ELK+
Sbjct  99    YKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKS  158

Query  166   PANANVGIQQAFAQFSTYKEEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN  225
             P++ N +I  AF Q+ TYK+EIS     NE L++SDG NAR GSLTA+ +RF+ W+   N
Sbjct  159   PSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISN  218

Query  226   VDIDDSMME--LEVLIKYMLTPSDLLNIIQNFILFESDGDKTIKILAAYHQYYMVNKAVK  283
              D D +++E  LE +++  +    LL+ I+ FILFESDG + IK +AAYHQ+  V  AV+
Sbjct  219   ED-DKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVN  277

Query  284   -----RTSKVLA-----DPDDKRIGVVWHTTGSGKSLSMVFYSGIVARK--LGNPTILVI  331
                   T+K L+      P+ K+ GVVWHT GSGKS+SM  Y+G + ++  + NPTI+V+
Sbjct  278   ATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVV  337

Query  332   NDRNDLDDQLFGTFAAAHEYLQQNPDHAESRGEVRKYMS-KNSGGIVFSTIQKFSPNFDA  390
              DRNDLD+QL+ TF  A + L+Q+P++A +R+++R  ++ ++SGGI+F+T+QKF+P +D+
Sbjct  338   TDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP-LDG  396

Query  391   GEEHMPILTNRSNVIVMVDEAHRSQYGMQAKLTDNGI-RYGYAKYLREALPNASFIGFTG  449
              + H P L  R N++V+ DEAHRSQYG+ A L  +G  +YGYAK +R+ALPNASF+GFTG
Sbjct  397   EQAH-PALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTG  455

Query  450   TPINTEDKSTVAMFGNYIDVYDITQAVNDHATVRIYYESHVFPLKLKDNAIDEYQKLIKE  509
             TP+++EDK T A+FG+Y+ +YDI +AV+D ATV IYYES++  L L+++ ++     + +
Sbjct  456   TPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDD  515

Query  510   AGINDDPNLRETERRNRAFTRLEALAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMS  569
                +++ + +E  + ++  +RLE L G+ PR+ ++A ++V HF +R+    GK+MIV MS
Sbjct  516   LVEDEETDQKEKTKGDW--SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMS  573

Query  570   RQNAVKLYNEIAKLRPEWINDDIHKGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMK  629
             R+  V+LYN +  LRPEW ++D++KG IK+IMT++ASD  ++     +KQ +  L+ R K
Sbjct  574   RDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFK  633

Query  630   DNDDELQIVIVVDMWLTGFDVPSMNTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDY  689
             D +D L+IVIV DMWLTGFD P  +TMYIDKPM+GHNL+QAIARVNRVFK+K +GL+VDY
Sbjct  634   DLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDY  693

Query  690   IGIADALRFALNVYTKD-DQGKVGINVDRALMLLKEKYDIIKEDFL-----YGIDYSEFD  743
             IGIA+ L+ AL+ YT   ++G+  I+   A+ +L EK D+I   F       G+DYS F+
Sbjct  694   IGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFE  753

Query  744   SDDSQTRQKAVTRVVNELAAEDDETKQKFFDVVTELQKAYALVSTQPEAQDLSAEIAFFK  803
             ++  +    A   ++       D+ K+++FDVV  L+KA +L ST  EA+ L  E+AF+ 
Sbjct  754   NNPQHVLLDAANYILGL-----DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLS  808

Query  804   TVKVFLTKLEAPDDPDDSKEIHSSVDYRMQQLLDQSIISEPNVDIYRDLGLERPNLDLIS  863
             +VKV + KL +     D K  +S  +  + ++LD++I++    D++   GL++PN++L+S
Sbjct  809   AVKVAIIKLTTT----DKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLS  864

Query  864   EQFLEKVNEITEKDLAITLLEKLLKGQVKAYQKTNIVKGKKFEELLQESIDDYNRRGITS  923
             ++FLE V E+ +++LA+ LLEKLL++ + A  + N+V+ KK+ + L+  +  YN R+I +
Sbjct  865   DEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIET  924

Query  924   EIVIRKLIDMAKEINKEQQEGKNLGLSKEEVAFYDALADHEKAVQELGEEKLHLIAAELV  983
               VI  LI+MAKE++     +  LGL+ +E+AFYDALA++E AV+ELG+E L  +A E+ 
Sbjct  925   AQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVT  984

Query  984   KTVKQQSGVDWERRSNVRAKMRVAVKHLLRKYGYPPDIAPDAIKTVVKQAEQMAS  1038
               +++ + VDW+ R +VRA++R+ V+  L KY YPPD A DA+  ++KQAE +++
Sbjct  985   AQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

168) Plabr_4424 in NC_015174


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  661 bits (2497),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/1062 (42%), Positives = 696/1062 (66%), Gaps = 61/1062 (5%)

Query  5     ISEAAIENAALNQLESLNIEVIRRGDLTPSFSSKHDL-----GVVLTDAIHSSIEKFNPH  59
             +SE  +E+ +L  + +   EV++  D++P   +K+ L     +V L   ++  +E +NPH
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPD--GKNPLRISFHDVFLRPIFRKQLETLNPH  59

Query  60    LPEATIATVVVSLSRPPHSILVENSRWFHKLLIEGVPVEYKDGETGEIRGGRARLIDFEN  119
             LP + +  ++  ++RP  + +V +++ FH LL+ GVPVEYK ++   +  + A L+DF++
Sbjct  60    LPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDK--VIHDTALLMDFNH  117

Query  120   PANNDFLVVRQLAIQGPSGNKIRPDLVLYVNGLPLVVIELKDPANTTATLDMAIDQLVRY  179
             P NN F VV Q+AI G    + RPD++ Y+NGLP+ VIELK P++  A +  A++QL  Y
Sbjct  118   PENNRFTVVNQVAISGTKQLR-RPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTY  176

Query  180   KEIAPDLFVPNLLLVVSDGLLTRVGSITSGRQRFTPWRPEKGG------EPTLEALIREL  233
             K+  +DLF+ N  LV+SDG  +R+GS+T++ +RF PW+           E  LE ++  +
Sbjct  177   KNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGF  236

Query  234   LTPAALLDYLRSCVAFEEDERGNIVKKVAGYHQFRAVRKARESVIDAVKT---PDRQNDE  290
             +    LLDY+R  + FE D +  ++KK+A+YHQF+AVR A ++ I A      P R N  
Sbjct  237   FNRELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIK  295

Query  291   AAGK-GGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTVVIVTDRNDLDDQLFHTFAMGR  349
             +++K +GVVWHTQGSGKS++M   AG L++ AEM NPT+V+VTDRNDLD+QL+ TF  ++
Sbjct  296   PGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAK  355

Query  350   ELLRQEPVQAGSREHLKQLLD-RASGGVIFTTIHKFA-----ESHGMISERSNVVVMADE  403
             +LL+QEP QA++R++L+++L  R SGG+IFTT++KFA     ++H  ++ R N+VV++DE
Sbjct  356   DLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDE  415

Query  404   AHRSQYG----------FIEGGARWMREALPNATFVGFTGTPLMAGDKVTRHVFGEYADV  453
             AHRSQYG          +  G A+ MR+ALPNA+F+GFTGTP+ + DK TR VFG+Y  +
Sbjct  416   AHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSI  475

Query  454   YDIHQAVADGATVPIYYEPRIVKLTIDeagarkaeatiaeaakadeNGE-EMEENIRIPL  512
             YDI++AV DGATVPIYYE+R+ KL +++       + + +    +E ++ E     +  L
Sbjct  476   YDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRL  535

Query  513   EELYGAPERLERVAKFLVEHWEQRRSAMEGKAIVVTMSRGIAARLYDEIAKLRPSWADDD  572
             E L G+  R+ +VA  LV H   R ++M+GKA++V+MSR+I  RLY+ +  LRP W  +D
Sbjct  536   EKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  573   DDKGMLKVIMTGTPADPEHIARHVRSKAQRKALGARFKDPADEFRLAIVVDMWLTGFDVP  632
              +KG +K+IMTG+++D EH+  H+ +K  +K L ARFKD  D +++ IV DMWLTGFD P
Sbjct  596   VEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAP  655

Query  633   CAHTMYLDKPLAGHNLMQAIARVNRVYGAKPGGLIVDLIGLADPLADALATYAKATGDSD  692
             C HTMY+DKP+ GHNLMQAIARVNRV+  KPGGL+VD IG+A+ L +AL TY+ + G ++
Sbjct  656   CCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQ  715

Query  693   KPVKELQDEAIPAMQSAFEQLRDFF------HGFDYSPALDADPRTVIRTYLGAVDHVMD  746
               +     +A++ +   ++ +++ F       GFDYS A++ +P+ V+   L+A + +++
Sbjct  716   TTIDA--RDAFAVLLEKLDVIHGMFAKTTTDPGFDYS-AFENNPQHVL---LDAANYILG  769

Query  747   VNQTVGEETGWKRFRGMVKRLSTAFALAVPREETKEITPHLAFFQNVVRMIRKRLAEDAA  806
             +++      G KR+ ++V  L+ A +L    +E+K +  +LAF+ + V++   +L    +
Sbjct  770   LDD------GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFL-SAVKVAIIKL----T  818

Query  807   PTSGTGASRDIDEAVRQVVGNAVDADDVIDLFAAAGLDTARLDILSDEFLNRVCALEQQN  866
              T    +  + +  + ++++NA+ A +V D+FA AGLD + +++LSDEFL+ V  + Q+N
Sbjct  819   TTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRN  878

Query  867   LALETLRKLLTDQIKISERTNLVQAQKFREALENAMLSYTNKQISTAEMIARLLELAKWV  926
             LA+E L KLL D I      N+VQ +K+ + L   +L Y N+ I TA++I  L+++AK  
Sbjct  879   LAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEF  938

Query  927   REAKQHGHDLGLSTEEIAFYDALAENGSAKEVMKSDKLRLMARELAEMVKKMPKLDWTQR  986
             + A  +++ LGL+ +EIAFYDALAEN SA   +  + L+ +A E++  ++K   +DW  R
Sbjct  939   QAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVR  998

Query  987   ESVRADLRRKVRRLLAMYGYPPDLSEDATQLVLKQAELSTEA  1028
             ESVRA LR  VR+ L  Y YPPD + DA +L+LKQAE+ +++
Sbjct  999   ESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

169) Calow_2045 in NC_014657


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  659 bits (2492),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/1057 (43%), Positives = 692/1057 (66%), Gaps = 65/1057 (6%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGSKIPIEDRE----DYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ ++ WF + G E LHG+ I+ ++++     +++V+L+  + K L  LNP+LP  
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKIYRNGAKVTRRNSEGEEVGEIVKIFDYENPKNND  123
              ++E + ++   + P I ++N+ +H +  +G  V  +  ++  + +   + D+++P NN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKR-DDKVIHDTALLMDFNHPENNR  122

Query  124   FLVCNQVKIKGA-GVRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             F V NQV I G+  +R PD++ YINGLP++++ELK+P D  A I +A+ QL+ YK +I+D
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  183   IFAYNEICVVSDGNKAKAGTLTAPWERFSAWKSIDGVSSVEGM-PELEVLIKGMFDKRRV  241
             +F  NE  V+SDG +A+ G+LTA  ERF +WK+I        +  +LE +++G F++  +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  242   LDIIRNFITFSTVKDEVIKIMAMYHQYYGVNKAVEETI----------RATSPGGDRRIG  291
             LD IR FI F +    +IK +A YHQ+ +V  AV+ TI          R+    G ++ G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  292   TFWHTQGSGKSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASDLI-PYP  350
               WHTQGSGKS+SM  Y+GK+++  E++NPTIVV+TDRNDLD+QLY TFC+A DL+   P
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  351   KQAESVEDLKEKLSQVAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDR  410
             +QA + ++L+E L+   +GGI+FTT+QKF +   E                ++ P L+ R
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGE----------------QAHPALNLR  406

Query  411   SNIIVIVDEAHRSHYEFID----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTL  460
              NI+VI DEAHRS+Y +            G+AK +R+ALPNASF+GFTGTP+  ED+ T 
Sbjct  407   DNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  461   QVFGDYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINEDID---RDFeevtegeeeevKN  517
              VFGDY+SIYD+++AV+D A VPIYYE+RL KL+L +E+++    + +++ E+EE + K+
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKE  526

Query  518   KLKTKWAALEALVGTKERIETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIK  577
             K K  W+ LE LVG+  RI  +A D+V HF  R   ++GK+MIV MSR ICV LYN ++ 
Sbjct  527   KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVA  586

Query  578   LRPHWHSDDLDKGVIKIVMSGNPSKDPKDFLPHLYTKLQIKEIEKRMKDPNDPLKLVIVR  637
             LRP+WHS+D++KG IKI+M+G++S D  ++ PH+Y K   K +E R KD NDPLK+VIVR
Sbjct  587   LRPEWHSEDVEKGEIKIIMTGSAS-DKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  638   DMWLTGFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALA  697
             DMWLTGFD PC HTMYIDKPMRGHNLMQAIARVNRVFKDKP+GLVVDYIGIA++LK AL 
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  698   NYTRSTGKEAATLPIDEAIRIMQEKYDIVCSYF------HGIDFSGWEEKSAEDKLSLLK  751
              YT S GK  +T+   +A+ ++ EK D++ + F       G+D+S+ E+++ +    +L 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLL  761

Query  752   QAMDLINKDETTKKNFLDQCMALCKAFALVIPREEAMRIRSDVAFFQAVRSNIVKYTPP-  810
             +A + I   +  KK ++D  +AL KA +L    +EA  ++ ++AF+ AV+  I+K T   
Sbjct  762   DAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  811   KGLSIEELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLIGHENKNLQ  870
             K +S  E +S + +I+ +++ A++   D+F  AGL KP++++LS+EFL+ +    ++NL 
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVD-DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLA  880

Query  871   IEVLRKLLNDEIKAKIRKNHVKYASFKEMIEKVLNKYHNRAITSAEVIKHLIDLAKEMQN  930
             +E+L KLLND I A+  +N V+   + + +  VL +Y+NRAI +A+VI +LI++AKE Q 
Sbjct  881   VELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQA  940

Query  931   MDKRAKEMNLTEEEMAFYDIVCQGEEAI--LNDEEAKEIARELVRIIKSKTEGQVDWTIK  988
                R   + L  +E+AFYD + + E A+  L DE  K +A E+   ++  T   VDW ++
Sbjct  941   AMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTT--VDWQVR  998

Query  989   ENIKASIRATVKRLLRRKGFKDPQKLDNVVKLVIEQA  1025
             E+++A +R  V++ L +  +  P+K  + V L++ QA
Sbjct  999   ESVRARLRILVRKTLLKYKYP-PDKALDAVELILKQA  1034

170) Tmath_1861 in NC_014209


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  656 bits (2481),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1057 (43%), Positives = 691/1057 (66%), Gaps = 65/1057 (6%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGNEIPVEDRK----DYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ ++ WF + G E LHG +I+ ++++     +++V+L+  + K L  LNP+LP  
Sbjct  4     EDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPAS  63

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKVYRNGAKVTRRNSEGEEVGEIVKIFDYENIENNE  123
              ++E + ++   + P I ++N+ +H +  +G  V  +  ++  + +   + D+++ ENN 
Sbjct  64    LFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKR-DDKVIHDTALLMDFNHPENNR  122

Query  124   FLVCNQVKIKGA-GLRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             F V NQV I G+  LR PD++ YINGLP++++ELK+P D  A I +A+ QL+ YK +I+D
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  183   IFAYNEICVVSDGNKAKAGTITTPWERFSAWKSIDGVSSVEGM-PELEVLIKGMFDKRRV  241
             +F  NE  V+SDG +A+ G++T+  ERF +WK+I        +  +LE +++G F++  +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  242   LDIIRNFITFSTAKDEVIKIMAMYHQYYGVNKAVEETI----------RATSPGGDRRIG  291
             LD IR FI F +    +IK +A YHQ+ +V  AV+ TI          R+    G ++ G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  292   TFWHTQGSGKSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASDLI-PYP  350
               WHTQGSGKS+SM  Y+GK+++  E++NPTIVV+TDRNDLD+QLY TFC+A DL+   P
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  351   KQAESVGDLKEKLSQIAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDR  410
             +QA + ++L+E L+   +GGI+FTT+QKF +   E                ++ P L+ R
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGE----------------QAHPALNLR  406

Query  411   SNIIVIVDEAHRSHYEFID----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTL  460
              NI+VI DEAHRS+Y +            G+AK +R+ALPNASF+GFTGTP+  ED+ T 
Sbjct  407   DNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTR  466

Query  461   QVFGNYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINENID---RDFeevtegeeeevKN  517
              VFG+Y+SIYD+++AV+D A VPIYYE+RL KL+L +E+++    + +++ E+EE + K+
Sbjct  467   AVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKE  526

Query  518   KLKTKWAALEALVGTKERLETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIK  577
             K K  W+ LE LVG+  R+  +A D+V HF  R   ++GK+MIV MSR ICV LYN ++ 
Sbjct  527   KTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVA  586

Query  578   LRPHWHSDDLDKGVIKIVMSGNASKDPKEFLTHLYTKSQIKEIEKRMKDPNDPLKLVIVR  637
             LRP+WHS+D++KG IKI+M+G+AS D  ++  H+Y K   K +E R KD NDPLK+VIVR
Sbjct  587   LRPEWHSEDVEKGEIKIIMTGSAS-DKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVR  645

Query  638   DMWLTGFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALA  697
             DMWLTGFD PC HTMYIDKPMRGHNLMQAIARVNRVFKDKP+GLVVDYIGIA++LK AL 
Sbjct  646   DMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  705

Query  698   NYTRSTGKEAATLPIDEAIRIMQEKYDIVCSYF------HGIDFSGWEEKSAEDKLSLLK  751
              YT S GK  +T+   +A+ ++ EK D++ + F       G+D+S+ E+++ +    +L 
Sbjct  706   TYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLL  761

Query  752   QAMDLINKDETTKKNFLDQCMALCKAFALVVPREEAMRIRSDVAFFQAVRSNIVKYTPP-  810
             +A + I   +  KK ++D  +AL KA +L    +EA  ++ ++AF+ AV+  I+K T   
Sbjct  762   DAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTD  821

Query  811   KGLSIEELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLMGHENKNLQ  870
             K +S  E +S + +I+ +++ A++   D+F  AGL KP++++LS+EFL+ +    ++NL 
Sbjct  822   KKFSQSEKNSLLSRILDNAIVATGVD-DVFALAGLDKPNIGLLSDEFLEEVREMPQRNLA  880

Query  871   IEVLRKLLNDEIKAKIRKNHVKYASFKEMIERVLNKYHNRAITSAEVIKHLIDLAKEMQN  930
             +E+L KLLND I A+  +N V+   + + +  VL +Y+NRAI +A+VI +LI++AKE Q 
Sbjct  881   VELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQA  940

Query  931   MDKRAKEMNLTEEEMAFYDIVCQGEEAI--LNDEEAKEIARELVRIIKSKTEGQVDWTIK  988
                R   + L  +E+AFYD + + E A+  L DE  K +A E+   ++  T   VDW ++
Sbjct  941   AMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTT--VDWQVR  998

Query  989   ENIKASIRATVKRLLRRKGFKDPQKLDNVVKLVIEQA  1025
             E+++A +R  V++ L +  +  P+K  + V L++ QA
Sbjct  999   ESVRARLRILVRKTLLKYKYP-PDKALDAVELILKQA  1034

171) alr4604 in NC_003272


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  651 bits (2461),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/981 (45%), Positives = 679/981 (70%), Gaps = 48/981 (4%)

Query  4    LTEDEIEqyqlqllqnlGYSYSNGYDIQPEGIKQERESFGEVILKHRLPQAISRINPTIP  63
            L+ED++EQ  L  +   G    +G DI P+G +  R SF +V+L+  + + +  +NP +P
Sbjct  2    LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  64   HDAQYQAQREIFNIASSDLLNNNEIFHKYLTEGITVEYQKNGETRGEPVKLIDWEHPENN  123
                 +    I    S+D++ +N  FH  L  G+ VEY++++    +   L+D +HPENN
Sbjct  62   ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  124  EFLAVNQFTVIEDNHNHRPDIVLFINGLPLVVIElknaankkanlnaaynqlqTYKRRIP  183
             F  VNQ ++   ++ +RPD++ +INGLP+ VIELK++++ +A++ AA+NQLQTYK  I+
Sbjct  122  RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  184  SLFTYNALLVISDGLSARAGSLTAGFNRFSTWKNPTGENQI----NELEILTNGLLNKQT  239
             LF  N  LVISDG +AR GSLTA+ +RF  WK  + E++     ++LE + NG++N++ 
Sbjct  182  DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  240  LLDLIRHFTVFEKSKTEDLKTGIVSITTIKKIAAYHQYYAVNKAVESIINASS-------  292
            LLD IR F +FE            +   IKKIAAYHQ+ AV  AV++ I AS+       
Sbjct  242  LLDYIRYFILFESD----------GKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLR  291

Query  293  ---QEGARKGGVLWHTQGSGKSLSMVFLAGKLVLNENLQNPTIVMLTDRNDLDDQLFDTF  349
               + G++K+GV+WHTQGSGKS+SM   AGKL+ + +++NPTIV++TDRNDLD+QL+ TF
Sbjct  292  SNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTF  351

Query  350  AGCQQLLRQDPQQAGDREQVRQLLNT-NSGGIIFTTVQKFSPADGETLYPQISPRPNIIV  408
               ++LL+Q+PQQA++R+Q+R++L + +SGGIIFTTVQKF+P DGE   P ++ R NI+V
Sbjct  352  CQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVV  411

Query  409  LADEAHRSQYGFTAKQVNVLDAEGNVIGKRTKYGFAKYIRQALPNATFVGFTGTPVEQTD  468
            ++DEAHRSQYG++A     LD +G       KYG+AK +R+ALPNA+F+GFTGTPV   D
Sbjct  412  ISDEAHRSQYGLSA----TLDKDGA-----YKYGYAKHMRDALPNASFMGFTGTPVSSED  462

Query  469  KNTPAIFGEYIDIYDISQAVKDGATVPIYYESRLVQVDLDAAGRQlldeldedlsfedls  528
            K+T A+FG+Y+ IYDI +AV DGATVPIYYESRL ++DL+    + L    +DL  ++ +
Sbjct  463  KDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET  522

Query  529  ttqkakakq-tkLEAIVGSTKRIRQIAQDIVTHFEARQQVNKGKAMIVTMSRQIAVNLYD  587
              +     + ++LE +VGS  RI+Q+A D+V HF AR+   +GKAMIV+MSR+I V LY+
Sbjct  523  DQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYN  582

Query  588  AIIQLRPDWHSEDLNLGKIKVVITTSAADEGNLVKHHTSKAQRQNLAQRLKDPENSLELA  647
            A++ LRP+WHSED++ G IK+++T SA+D  +L  H  +K  ++ L  R+KD +++L + 
Sbjct  583  ALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIV  642

Query  648  IVCDMWLTGFDAPCLHTMYIDKPLKSHNLMQAIARINRVYFEKTGGLIVDYLGLATELKK  707
            IV DMWLTGFDAPC HTMYIDKP+++HNLMQAIAR+NRV+ +K GGL+VDY+G+A ELK+
Sbjct  643  IVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQ  702

Query  708  ALSFYSQSGGKGDLTLNQEVAVGLLLAKLEIVEQIIS------GFTYQHYFEADTGEKLN  761
            AL  Y++S GKG+ T++   A ++LL KL++++ +++      GF Y   FE +     +
Sbjct  703  ALKTYTDSKGKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSA-FENNPQ---H  758

Query  762  ILKNATNYV-AAPNIKDRFLSEVIALSKAHSLAVPHPQAIAASETISFFQAIQASLRKLE  820
            +L +A+NY+ +  + K R++  V+AL+KA SL     +A +    ++F+ A++ ++ KL 
Sbjct  759  VLLDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLT  818

Query  821  GSGDSGGLSNQDIETAIRQVVDQALVSDAVINIFDEAGIKNPDISIISDEFMAEVRGMEH  880
             ++    +S+ + ++ + +++D+A+V+ +V ++F  AG+ +P+I+++SDEF+ EVR M +
Sbjct  819  TTDKK--FSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQ  876

Query  881  QNLAVELLQKLLKDEVKTRSRTNIVQSRKLSEMLEDALRRYRNQVISVTDILEELLELAK  940
            +NLAVELL+KLL+D + +R+  N+VQ +K S+ L   L RY N+ I  ++++EEL+++AK
Sbjct  877  RNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAK  936

Query  941  DTKAANARGEELGLEPYELAF  961
            + +AA AR++ LGL+P E+AF
Sbjct  937  EFQAAMARDDALGLNPDEIAF  957

172) Mzhil_1435 in NC_015676


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 456/1056 (44%), Positives = 711/1056 (68%), Gaps = 49/1056 (4%)

Query  16    ALHLLDELGYECIYGPEISPGGNLVERMDYSDVILRNRLQDAIEKINPSIPEKAREEAIE  75
             +L  +   G E + GP+I+P+G+   R+ + DV+LR  ++  +E +NP +P    +E I 
Sbjct  11    SLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIIS  70

Query  76    KLLQPSAQDLVFNNHEFHNHIKNGIDVAYESGNETYYDKVYPVDFNCLTNNDFLAVNQFT  135
             ++ +P + D+V +N  FH+ + +G+ V Y  ++    D    +DFN   NN F  VNQ +
Sbjct  71    RITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVA  130

Query  136   VLDGEHKRRPDLILFVNGLPLVVMELKRPDNYTDDSDLIDEAYDQLQTYKKEIPNLLRFN  195
             + +  + RRPD+I ++NGLP+ V+ELK P +   D   I  A++QLQTYK+EI++L+  N
Sbjct  131   ISGTKQLRRPDVICYINGLPIAVIELKSPSDVNAD---IWAAFNQLQTYKNEISDLFICN  187

Query  196   EILVISDGQDAKAGTLTSNSNFFAPWK--HENDNKFSTEPEITTLINNMCLPEVLIDIVQ  253
             E LVISDG +A+ G+LT++ + F PWK   ++D+K   E ++  ++N     E+L+D ++
Sbjct  188   EALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIR  247

Query  254   NFILFEDDNGVLLKKIARYHQYYAVNKAVHSTKVAVSPE----------GDKRCGVVWHT  303
              FILFE D   L+KKIA YHQ+ AV  AV++T VA +            G K+ GVVWHT
Sbjct  248   YFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHT  307

Query  304   TGAGKSMEMVFYTQKISRDTTLENPTVVVITDRNDLDDQLYDTFSRCITYLGQTPIQAET  363
              G+GKS+ M  Y+ K+ +++ ++NPT+VV+TDRNDLD+QLY TF +    L Q P QA  
Sbjct  308   QGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASN  367

Query  364   SKDLMDKLT-RKSGGIVFTTLQKFSP--DEDKYPLLSERKNIIVLADEAHRSQYGLGAKI  420
               +L + L+ R SGGI+FTT+QKF+P  +E+  P L+ R NI+V++DEAHRSQYGL+A +
Sbjct  368   RDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATL  427

Query  421   NRNTGEKSYGFAKYLRDALPNASFIGFTGTPIELSDKSTKAIFGDYIDIYDIEQSLHDQV  480
             +++ + K YG+AK +RDALPNASF+GFTGTP+   DK T+A+FGDY+ IYDI+++++D  
Sbjct  428   DKDGAYK-YGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGA  486

Query  481   TVPISYESRLANLKLLTNDLEKLDAGFNEITDGEESERIEKLKSKESSVEAILTTPENMD  540
             TVPI YESRLA+L L  ++LE L +  +++ ++EE+++ EK K+  S +E ++ +   + 
Sbjct  487   TVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIK  546

Query  541   KIANDIINHFESRSKAMDGKAMIVTMSRHMAAQLYESIIKYRPDWHDEDDAKGQIKVIIT  600
             ++A D+++HF +R+ +M+GKAMIV+MSR++  +LY++++  RP+WH ED  KG+IK+I+T
Sbjct  547   QVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMT  606

Query  601   GKASETE-LIDHIRPkqkqkqiqqRMKDPEDELKIVIVCDMWLTGFDVPCLTTMYFLKYL  659
             G AS+ E L  HI  KQ +K+++ R KD +D LKIVIV DMWLTGFD PC  TMY+ K +
Sbjct  607   GSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPM  666

Query  660   KGHNIIQAISRVNRVYLDKPGGLVVDYVGILYDLKHALKQYTESGGKGLLAEDQQVAVDY  719
             +GHN++QAI+RVNRV+ DKPGGLVVDY+GI  +LK+ALK YT+S GKG  + D + A   
Sbjct  667   RGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAV  726

Query  720   MQEKYEQINGML------HGFDYSRVFKVPAGEKLEIVREGADFILQKDILINQEVDQKI  773
             + EK + I+GM+       GFDYS  F     +  +++ ++A++IL         +D+  
Sbjct  727   LLEKLDVIHGMFAKTTTDPGFDYS-AF---ENNPQHVLLDAANYIL--------GLDD--  772

Query  774   RPKGDKDYTRKQFIKFTTELSKAFALASPRPETEAIRDELGYFQSVKSVLISLDRKKKGY  833
                      +K+++     L+KA +L S   E+ +++ EL+++ +VK  +I L    K +
Sbjct  773   --------GKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKF  824

Query  834   KSTKELKTAVRQLVRDTVKTGEIIDVFDFMNMKKEGIGILDEKFLNEVKRMPQknlaael  893
               + E ++ + +++ +++ +  + DVF +  + K  IG+L + FL+EV+ MPQ+NLA EL
Sbjct  825   SQS-EKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVEL  883

Query  894   lekllnDKIKAYSKKNIIRSSMFSEKLQQSVNSYRNKNITNIAVVEELIKLAHEIRNEEQ  953
             LEKLLND I A +++N+++   +S++L+  +  Y N+ I    V+EELI++A E++    
Sbjct  884   LEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMA  943

Query  954   REGNLGLSTEEIAFYDALVENGSAVEQLGDEQLKKIATELVEVIHKNAGVDWTarktvka  1013
             R++ LGL+ +EIAFYDAL EN SAV +LGDE LKK+A E+   ++K++ VDW  R +V+A
Sbjct  944   RDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRA  1003

Query  1014  klrlkvkkllkkykyPPDQQKAAVELILKQAHTSAE  1049
             +LR+ V+K L KYKYPPD+   AVELILKQA+  ++
Sbjct  1004  RLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSN  1039

173) BCAL0420 in NC_011000


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  648 bits (2450),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/1011 (42%), Positives = 659/1011 (66%), Gaps = 55/1011 (5%)

Query  52    RVQGINPSLPHSVSAEVALEASRPPHPTLVENNRWFHDLLINGAPVEYKDAATGETRGGR  111
             +++ +NP LP S+  E+    +RP  P +V +N+ FH+LL++G PVEYK         + 
Sbjct  52    QLETLNPHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDK--VIHDT  109

Query  112   ARLIDFDNPANNDFLVVRQLTVAGANGKTIRPDLVLYVNGLPLVVIELKDPANTSATLEV  171
             A L+DF++P NN F VV Q++++G++ +  RPD++ Y+NGLP+ VIELK P++ +A +  
Sbjct  110   ALLMDFNHPENNRFTVVNQVAISGTK-QLRRPDVICYINGLPIAVIELKSPSDVNADIWA  168

Query  172   AIDQLGRYKTVAPDLFVPSLLLVASDGLLTRVGSITSGLQRFTPWRPAHGG------EPT  225
             A++QL  YK   +DLF+ +  LV SDG  +R+GS+T++ +RF PW+           E  
Sbjct  169   AFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQ  228

Query  226   LEALIRELLNPSALLDYLLSCVAFEEDERGNIVKKVAGYHQFRAVRKARASVISAIKTS-  284
             LE ++  ++N   LLDY+   + FE D +  ++KK+A+YHQF+AVR A  + I A     
Sbjct  229   LENVVNGFFNRELLLDYIRYFILFESDGK-RLIKKIAAYHQFHAVREAVNATIVASTGKF  287

Query  285   -ARSDDVTAG--KGGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTIVIVTDRNDLDDQL  341
              +   ++ +G  K+GVVWHTQGSGKS++M   AG L++ AEM NPTIV+VTDRNDLD+QL
Sbjct  288   LPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQL  347

Query  342   FETFAMGRALLRQDPMQAEGREHLRQLLD-RASGGVVFTTIHKFT-----EAHGMISERA  395
             + TF  ++ LL+Q+P QA  R++LR++L  R SGG++FTT++KF+     +AH  ++ R 
Sbjct  348   YTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRD  407

Query  396   NIVVMADEAHRSQYGFVE----------GGARWMREALPNATFVGFTGTPLMAGDRVTQN  445
             NIVV++DEAHRSQYG+            G A+ MR+ALPNA+F+GFTGTP+ + D+ T+ 
Sbjct  408   NIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRA  467

Query  446   VFGEYADVYDVRQAVADGATVPIYYEPRIVKLTIDETGAKEAEAKIAQYATRDEYGQ-ET  504
             VFG+Y  +YD+++AV DGATVPIYYE+R+ KL +++       +++ +    +E +Q E 
Sbjct  468   VFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEK  527

Query  505   PENVRISLEELYGAPERLQRVAKFVVEHWEERRAAMEGKAMLVTMSRDIAARLYDEICKL  564
                 +  LE L G+  R+++VA  +V H   R A+M+GKAM+V+MSRDI  RLY+ +  L
Sbjct  528   TKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVAL  587

Query  565   RPAWHDEDDAQGAIKVVMTGGPNDSEHMMRHSRSKAQRKSLADRFKDPTDDFRLAVVVDM  624
             RP WH ED  +G IK++MTG+++D EH+  H  +K  +K L  RFKD  D +++ +V DM
Sbjct  588   RPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDM  647

Query  625   WLTGFDVPCAHTMYLDKPLAGHNLMQAIARVNRVYGEKPGGLIVDMIGLADPLADALATY  684
             WLTGFD PC HTMY+DKP+ GHNLMQAIARVNRV+ +KPGGL+VD IG+A+ L +AL TY
Sbjct  648   WLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTY  707

Query  685   ASATGETDKPVKELQDEAIPAMQSAFEQLRSFF------HDFNYAEALDAIPSRVLRVYL  738
             + + G  +  +     +A++ +   ++ +++ F       +F+Y+ A++  P +VL   L
Sbjct  708   TDSKGKGQTTIDA--RDAFAVLLEKLDVIHGMFAKTTTDPGFDYS-AFENNPQHVL---L  761

Query  739   GAIDHVLDVKHTVGDETGWQRFGGMVKRLATAFALAVPREETRDITPHLAFFQRVAAMIR  798
             +A + +L++      + G +R+ ++V  L  A +L    +E++ +  +LAF+  V   I 
Sbjct  762   DAANYILGL------DDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAII  815

Query  799   KRLTDERGPTESRSDGSPDIDAAVRQVIGGAVDAGEVIDLFAAAGLDAARLDILSDDFLE  858
             K  T ++  ++S      + ++ + ++++ A+ A  V D+FA AGLD + +++LSD+FLE
Sbjct  816   KLTTTDKKFSQS------EKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLE  869

Query  859   RVSALEQKNLALETLRKLLADQIKLSERSNLVQAQKFREALERAMLGYTNKQITTAQMIT  918
              V  + Q+NLA+E L KLL D I     +N+VQ +K+ + L   +L Y N+ I TAQ+I 
Sbjct  870   EVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIE  929

Query  919   QLLALAKWVREAKLHGQDLGLSDEEAAFYDALTENGSAKEAMKSDQLRLMARELAEMVKK  978
             +L+ +AK  + A  +++ LGL+ +E AFYDAL+EN SA   +  + L+ +A E++  ++K
Sbjct  930   ELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRK  989

Query  979   MPRLDWTQRESVRADLRRKVRRLLAMYGYPPDLSEEATQLVLRQAELSTEN  1029
                +DW  RESVRA LR  VR+ L  Y YPPD + +A +L+L+QAE+ +++
Sbjct  990   STTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

174) GLX_22380 in NC_016027


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/1050 (43%), Positives = 689/1050 (66%), Gaps = 28/1050 (2%)

Query  15    VREEAVELAALSWFDLVGWRTLPGDHLAPDGPIGARRDYRQCVLEPELRSALATLNPDAT  74
             + E+ +E  +L+WF   GW  L G ++APDG    R  +++  L P +R  L TLNP+  
Sbjct  2     LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  75    AAMVDTAVQAVLSVPSQELKENNRAFHTMLASGVPVEIVENGETRTVGLRLFDRQNLSAN  134
             A++ D  +  +    S ++  +N+AFH +L SGVPVE   ++        L D ++   N
Sbjct  62    ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  135   RWLVANQFVVQGEREIIRPDVTAFVNGLPLAVLELKSPVHEHATLESAWHQLQNYKAKAP  194
             R  V NQ  + G +++ RPDV  ++NGLP+AV+ELKSP + +A + +A +QLQ YK   +
Sbjct  122   RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  195   ELLRTNQVLVISDGLDARIGSLTAGLDRFGPWRTIEGDTLDDGSRPELEVLIRGVFAPER  254
             +L+  N+ LVISDG +ARIGSLTA+ +RF PW+TI  +        +LE ++ G F  E 
Sbjct  182   DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  255   FLDFIVDFVAFEVVDGVVKSKKLAGYHQFHAVRKALVSTEHAAAE----------gggrr  304
             +LD+I  F+ FE  DG    KK+A+YHQFHAVR A+ +T  A++            G+++
Sbjct  242   LLDYIRYFILFES-DGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKK  300

Query  305   ggVIWHTQGSGKSLTMLFFVRQLQLAKPLRNPTVVIVTDRNDLDDQLFGIFNHHISALRG  364
             +GV+WHTQGSGKS++M  +  +L     + NPT+V+VTDRNDLD+QL+  F +    L+ 
Sbjct  301   AGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQ  360

Query  365   TPRQANSAAEMRQLLAV-DIGGLVFTGIQKFR--GDEDGHPLLTDRRNVIVIADEAHRSQ  421
              P+QA++  ++R++LA  + GG++FT +QKF   ++E++HP L  R N++VI+DEAHRSQ
Sbjct  361   EPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQ  420

Query  422   YGLRKRFVVDRNGVRETVGFAEYLRQALPNATFVGFTGTPIEEKDRNTQAVFGDVIDTYD  481
             YGL     +D++G     G+A  +R+ALPNA+F+GFTGTP+   D++T+AVFGD +  YD
Sbjct  421   YGLSA--TLDKDGAY-KYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  482   MTQAVTDKATVPIHYTARLAKlrlelsenereeldalaeelsegdeaaVEHEKGKLGRFE  541
             + +AV D ATVPI Y +RLAKL L+  E E    +       E  +   E  KG  +R+E
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQK-EKTKGDWSRLE  536

Query  542   EVVGAPDRIHEVARDIVAHFEARREALGGGKGMIVTISRRVAVELYNRIAVLRPDWVSAD  601
              +VG+  RI +VA D+V HF AR  ++ G K+MIV++SR + V LYN +  LRP+W S D
Sbjct  537   KLVGSEPRIKQVAADLVKHFAARNATMNG-KAMIVAMSRDICVRLYNALVALRPEWHSED  595

Query  602   PRDDATGMLKVVITGKGNTDPELLQPHLRSKRQREELAERFKNPTSGFDLVIVRDMWLTG  661
                   G +K+++TG + +D E LQPH+ +K+ +  L  RFK+    + +VIVRDMWLTG
Sbjct  596   V---EKGEIKIIMTG-SASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTG  651

Query  662   FDAPSLHTLYIDKPMRGHGLMQAIARVNRVWGDKPGGLVVDYLGVGTELREALAQYTE-R  720
             FDAP  HT+YIDKPMRGH LMQAIARVNRV  DKPGGLVVDY+G++ EL++AL  YT+ +
Sbjct  652   FDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSK  711

Query  721   DRDQVRPDLDEAVRQTLLRLESAETLLEGVAWRRFFNASP--GERLTVLKQCLEHLLSTQ  778
             +++Q   D  +A    L +L+  + ++   +    F+ S+   +   VL +  + +L+ +
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAFENNPQHVLLDAANYILGLD  771

Query  779   Q-RDRFVETSLEMEIAYAISAGDERVAVRRDEIAIMAAIRTNLVKYTKGGVR-SRFDIER  836
             + + R+ +  L ++ A ++ +  +     + E+A+++A++  ++K T  + + S+ + + 
Sbjct  772   DGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNS  831

Query  837   DIRQLLSRAVMSDGILDVFQSAGLERPDLSILSDEFLAEARSSRQPSLAVETLRRLLEGE  896
              + ++L  A+++ G+ DVF  AGL++P++++LSDEFL E R   Q +LAVE L +LL++ 
Sbjct  832   LLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDG  891

Query  897   IKARTSSNLVEARKLTDRLDETLRRYHNRAVDSLQVIEELIALAKELSAAKSRGeelals  956
             I ART++N+V+ +K +DRL   L RY+NRA+++ QVIEELI +AKE+ AA +R++ L+L+
Sbjct  892   IHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLN  951

Query  957   eeelaFYDALAENGSARDLMAHDALRTLAQILTATIRSSVSIDWTRKESVRAKMRIEVRK  1016
              +E+AFYDALAEN SA   +++++L+ LA  +TA +R S ++DW  +ESVRA++RI VRK
Sbjct  952   PDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRK  1011

Query  1017  LLARYGYPPDLQRAAVDLVIKQAELIAGSW  1046
              L +Y YPPD    AV+L++KQAE+++ SW
Sbjct  1012  TLLKYKYPPDKALDAVELILKQAEVVSNSW  1041

175) Desaf_3450 in NC_016629


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/1012 (44%), Positives = 680/1012 (68%), Gaps = 49/1012 (4%)

Query  43    AIFLRQRIDDAAQHLSPQITAWARQQALKHLQKPEYSTLAQNNRWFHTLLTEGVEVEYRD  102
              +FLR  +    + L+P++ A   ++ + ++ +PE + +  +N+ FH LL  GV VEY+ 
Sbjct  42    DVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYK-  100

Query  103   PASGETRGDRARLIDFNHPRQNDLLVVRQLAVTGLSGKLIRPDLTVFLNGLPIAVIELKD  162
                +    D A L+DFNHP +N + VV Q+A++G + +L RPD+  ++NGLPIAVIELK 
Sbjct  101   -RDDKVIHDTALLMDFNHPENNRFTVVNQVAISG-TKQLRRPDVICYINGLPIAVIELKS  158

Query  163   PTNTGADLNMAIGQLRDKMQIAPDLFVPNLLLVVSDGLLTRVGSITSGISRFTPWR--SA  220
             P++  AD+  A+ QL+   +  +DLF+ N  LV+SDG  +R+GS+T++  RF PW+  S 
Sbjct  159   PSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISN  218

Query  221   EGGKP----TLEALIHELFEPSMLLDYLRTCITFEEDERGGIAKKIAGYHQFRAVRNTRA  276
             E++KP     LE +++ +F+  +LLDY+R  I FE D +  + KKIA+YHQF+AVR++  
Sbjct  219   EDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKR-LIKKIAAYHQFHAVREAVN  277

Query  277   SVLA-------HLKSPIGKGDGRGGVVWHTQGSGKSLTMLMLAGALVREPVMANPTIVMV  329
             + +         L+S I  G  ++GVVWHTQGSGKS++M   AG L++++ M NPTIV+V
Sbjct  278   ATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVV  337

Query  330   TDRNDLDDQLFGTFAAGRALLRQEPIQAESREHLKELLD-RAAGGVVFTTIHKFT-----  383
             TDRNDLD+QL+ TF  ++ LL+QEP QA +R++L+E+L  R +GG++FTT++KF+     
Sbjct  338   TDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGE  397

Query  384   DAHGVISERANVVVMADEAHRSQYGLIE----------GGARWMREALPNATFVGFTGTP  433
             +AH  ++ R N+VV++DEAHRSQYGL            G A+ MR+ALPNA+F+GFTGTP
Sbjct  398   QAHPALNLRDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTP  457

Query  434   LERDDKNTIHVFGEYSDVYDLRQAVEDGATKPLYYESRIVKLTVDGaraaaaeaeleqav  493
             +  +DK+T  VFG+Y  +YD+++AV+DGAT P+YYESR+ KL ++     A  +++++ V
Sbjct  458   VSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLV  517

Query  494   kaDASGE-EVADQIRIPLEALVGAQERVARLAAFIVEHWEKRRAAMEGKAMIVTMSRDIA  552
               + +++ E +   +  LE LVG++ R+ ++AA +V H   R A+M+GKAMIV+MSRDI 
Sbjct  518   EDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDIC  577

Query  553   ARLYEGIKAFRPDWHDPDDERGVMKVIITERGNDAEPLRSHVRPKAARKRLAERFKSPDD  612
              RLY+++ A+RP+WH  D E+G +K+I+T  ++D E L++H+  K ++KRL  RFK  +D
Sbjct  578   VRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLND  637

Query  613   DFRLVIVCNMWLTGFDCPPAHTMYLDKPLASHNLMQAIARVNRVYGDKPGGLIVdllgla  672
              +++VIV +MWLTGFD P  HTMY+DKP+ +HNLMQAIARVNRV+ DKPGGL+VD +G+A
Sbjct  638   PLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIA  697

Query  673   dqladalaTYTQAGGTGEAVKQVQDEAVPAMQTAFEKLRAFF------HGCAYEAALDTE  726
             ++L +AL TYT++ G G++  + +D A + +   ++ +++ F       G  Y +A++ +
Sbjct  698   NELKQALKTYTDSKGKGQTTIDARD-AFAVLLEKLDVIHGMFAKTTTDPGFDY-SAFENN  755

Query  727   PKEVLPIYLAAIDHVFAQQDGWKRLRALVKELSAAFALAVPRPETEKVVDHLAFFQRVTA  786
             P++VL   L A + +++ +DG KR   +V  L+ A +L     E+  +  +LAF+  V  
Sbjct  756   PQHVL---LDAANYILGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKV  812

Query  787   MIRKKLTDESGSAMKAHQRDVDAAVRQIIGGAVEADQVIDLFAAAGLDEARLDILSDEFL  846
              I  KLT    +  K  Q + ++ + +I++ A+ A  V D+FA AGLD + +++LSDEFL
Sbjct  813   AI-IKLT---TTDKKFSQSEKNSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFL  868

Query  847   QRVAALEQKNLALETLRKLLTDQIRITERMNIVQSKKFREALEDAMLRYTNKAITTAEMI  906
             + V  + Q+NLA+E L KLL D I+     N+VQ KK+ + L   +LRY N+AI TA++I
Sbjct  869   EEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVI  928

Query  907   SRLLDLAKDLRNAQRRGEDQGLSREEAAFYDALAENGSAREVMKSDTLRLMARELTEMIK  966
               L+++AK+++ A  R++  GL+ +E AFYDALAEN SA   +  +TL+ +A E+T  ++
Sbjct  929   EELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLR  988

Query  967   KMPKLDWTQRESVRAGLRRSVRRLLAKYGYPPDLAEDATQLVLRQAELSTTN  1018
             K   +DW  RESVRA LR  VR+ L KY YPPD A DA +L+L+QAE+ + +
Sbjct  989   KSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELILKQAEVVSNS  1040

176) SABB_01782 in NC_021670


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  609 bits (2302),  Expect = 1e-175, Method: Compositional matrix adjust.
 Identities = 356/740 (49%), Positives = 550/740 (75%), Gaps = 27/740 (3%)

Query  1     MVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKE  58
             M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +K+LL+Q P+QA  R +
Sbjct  316   MCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----AKDLLKQEPQQASNRDQ  370

Query  59    LKSLLSV-ESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNAKYDDK  117
             L+ +L+  ESGGI+FTT+QKF P + E + +AL  R N++V++DEAHR+QYG++A  D K
Sbjct  371   LREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-K  429

Query  118   GEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVK  177
             + + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+ +YD+ +AV DG+TV 
Sbjct  430   DGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVP  489

Query  178   IYYESRIIPLNLPQN-LD-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALA  235
             IYYESR+  L+L ++ L+ L    +D+ ED+E D K++ K+ WSR+E L G+ PR+  +A
Sbjct  490   IYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVA  549

Query  236   KDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSS  295
              D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS+D +KG IK++MTGS+
Sbjct  550   ADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSA  609

Query  296   SDPTSFQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGH  355
             SD   +Q HI  K+ ++ LE R KD+ND L++VIVRDMWLTGFD P  HTMYIDKPM+GH
Sbjct  610   SDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGH  669

Query  356   NLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLL  414
             NLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S +++QT+ID+  A  ++L 
Sbjct  670   NLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLE  729

Query  415   KYDVIQDMLYN------LDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTEL  468
             K DVI++M+ +      +DYS F+++ +      + D+ +Y++GL +D ++R++  V  L
Sbjct  730   KLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILGL-DDGKKRYFDVVLAL  784

Query  469   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  528
              KA +LC+T   A+ L+ E+AF+ AVK +++KL    K    + + +E ++ +++++ ++
Sbjct  785   NKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KFSQSEKNSLLSRILDNA  840

Query  529   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  588
             +V+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL++LL++ + +  + N 
Sbjct  841   IVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNV  900

Query  589   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  648
                K++S+ L   + +YN+R+IET++VIEELIQ+AK+++    R++ LGLN+DEIAFYDA
Sbjct  901   VQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDA  960

Query  649   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  708
             LA +E+A   +GD  L+ +A E+T  ++ +  VDW  R+S +A++R+ VR+ L KY YPP
Sbjct  961   LAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPP  1020

Query  709   DLQKMAVEQVVEQAELMASN  728
             D    AVE ++ QAE+++++
Sbjct  1021  DKALDAVELILKQAEVVSNS  1040

177) SAMSHR1132_00490 in NC_016941


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  606 bits (2288),  Expect = 2e-174, Method: Compositional matrix adjust.
 Identities = 357/751 (48%), Positives = 550/751 (74%), Gaps = 35/751 (4%)

Query  1    NLLENNLTFHENLINGIEVEDYDDEGSIV-EIVKIVDFEHPQNNNFLAVNQFTVVNGDYT  59
            +++ +N +FH+ L++G+ VE Y  ++ ++ +   ++DF+HP+NN F  VNQ ++      
Sbjct  79   DIVVSNKAFHHLLLSGVPVE-YKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQL  137

Query  60   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVVVTSDGIN  119
            +RPD++ +INGLPI VIELK++++   ++  +++QL+TYK  I++LF  NE +V SDG N
Sbjct  138  RRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYN  197

Query  120  TKVGSLTANYDRFMTWRSKDGETESSSSLASLDVLIHGMLNPETLLDLIRYFVLFQDNGK  179
            +++GSLTA+ +RF+ W++   E + +     L+ +++G +N E LLD IRYF+LF+ +GK
Sbjct  198  ARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGK  257

Query  180  GHISKILAAYHQYYAVNKAVDRALLASSGR----------GDGKGGVIWHTQGSGKSLTM  229
              I KI AAYHQ+ AV  AV+ +++AS+G+          G  K+GV+WHTQGSGKS++M
Sbjct  258  RLIKKI-AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISM  316

Query  230  VFFSGKLIQM--LNNPTLVVITDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKEL  287
              ++GKL+Q   +NNPT+VV+TDRNDLD QLY+TF +     +K+LL+Q P+QA  R +L
Sbjct  317  CCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----AKDLLKQEPQQASNRDQL  371

Query  288  KSLLSV-ESDGIVFTTMQKFEPEQNETTMASLTERKNVFVMADEAHRTQYGFNANYDDRG  346
            + +L+  ES+GI+FTT+QKF P + E + ++L  R N+ V++DEAHR+QYG++A  D ++
Sbjct  372  REMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KD  430

Query  347  EGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVCGNYIDVYDMTQAVADGSTVKI  406
             + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ V G+Y+ +YD+ +AV DG+TV I
Sbjct  431  GAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPI  490

Query  407  YYESRVIPLNLPQN-LD-LDEAYNDITEDQKEDVKQRLKSKWSRIEALAGAKPRVEALAK  464
            YYESR+  L+L ++ L+ L    +D+ ED+  D K++ K+ WSR+E L G+ PR+  +A 
Sbjct  491  YYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAA  550

Query  465  DIIQHFETRQQAMKAKGMIVTMSRRIDVDLYDEIIRLKPEWHLDDDDKGVIKVVMTGSSS  524
            D+++HF +R+ +M++K+MIV+MSR I V LY+ ++ L+PEWH +D +KG IK++MTGS+S
Sbjct  551  DLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSAS  610

Query  525  DPASFQRHIGPKKRHNLLEKHMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHN  584
            D   +Q HI  K+  + LE + KD+ND L++VIVRDMWLTGFD P  HTMYIDKPM+GHN
Sbjct  611  DKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHN  670

Query  585  LMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTTIDTDKAVELMLLK  643
            LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S +++QTTID+  A  ++L K
Sbjct  671  LMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLEK  730

Query  644  YDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIGLGEERQRFIKTVTELGK  697
             DVI++M+ +      +DYS F+++ +      + ++ +Y++GL++ ++R++  V  L K
Sbjct  731  LDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGKKRYFDVVLALNK  786

Query  698  AFALCATEPTAQELNDEIAFFKAVKAGLVKL  728
            A +LC+T   A+ L+ E+AF+ AVK +++KL
Sbjct  787  AWSLCSTLDEAKPLQKELAFLSAVKVAIIKL  817

178) GWCH70_1642 in NC_012793


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  605 bits (2284),  Expect = 5e-174, Method: Compositional matrix adjust.
 Identities = 423/1052 (41%), Positives = 681/1052 (65%), Gaps = 70/1052 (6%)

Query  1     MFTEEQLENVVIEYFQELGYNYLPASELKRDEKEVL------LFDR--LEAALVRLNPSL  52
             M++E++LE++ +  F   G + L ++++  D K+ L      +F R  +   L  LNP L
Sbjct  1     MLSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHL  60

Query  53    SLDVIREAIRKIRHFETNDVFTNNKVFHKYLTETVEVAEFVNGETVYHRVRLI-DWEVPE  111
             +  ++ E I +I + E+ D+  +NK FH  L   V V E+  ++ V H   L+ D + PE
Sbjct  61    PASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPV-EYKRDDKVIHDTALLMDFNHPE  119

Query  112   NNDFLVVNQLEVVEKGQKKIPDIVLYVNGIPLVVFELKSTSREEVDIEDAYKQLKNYMNV  171
             NN F VVNQ+ +    Q + PD++ Y+NG+P+ V+ELKS S  + DI  A++QL+ Y N 
Sbjct  120   NNRFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKN-  178

Query  172   HIPSLFYYNAFLVISDGVKARAGTITAPLDRFLAWKKIHIEDE-VVENRELETLMYGLFN  230
             +I+ LF  N  LVISDG +AR G++TA  +RFL+WK I  ED+  + +++LE ++ G+FN
Sbjct  179   EISDLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFN  238

Query  231   QKRFLDVIKNFTLFTNEAKIM----AAYHQYYGMKKAIESTI----------RAVGKDG-  275
             +  +LD I+ F LF +++K +    AAYHQ+ +++ A+++TI          R+  K G 
Sbjct  239   RELLLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGS  298

Query  276   -RAGVIWHTQGSGKSYSMVFLAGNLVKREELKNPTIVVITDRNDLDGQLFETFSGASEFL  334
              +AGV+WHTQGSGKS SM   AG+L+++ E++NPTIVV+TDRNDLDGQL+ TF  A ++L
Sbjct  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLL  358

Query  335   RQTPQQAETRSHIKELLENRQTGGIIFSTIQKF-----EEETGLLSDRENIIVMVDEAHR  389
             +Q PQQA  R +++E+L  R++GGIIF+T+QKF     E+    L+ R+NI+V+ DEAHR
Sbjct  359   KQEPQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHR  418

Query  390   SQYGVDPKYDIVTGEQKYGYAKYLREALPNATYIAFTGTPIETTDKSTTGLFGDVIDVYD  449
             SQYG+ +  D   G  KYGYAK +R+ALPNA++++FTGTP+ + DK T ++FGD + +YD
Sbjct  419   SQYGLSATLDK-DGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYD  477

Query  450   MTQAVQDGATVKIYYESRLAKVKLDEKKMNEIDQEYWNMQVNEGVDDYIVEQSQKS---L  506
             + +AV+DGATV IYYESRLAK+ L++  ++ +       QV++ V+D   +Q +K+    
Sbjct  478   IQDAVDDGATVPIYYESRLAKLDLNHEELEALSS-----QVDDLVEDEETDQKEKTKGDW  532

Query  507   SRMEQIIGDKDRIREVVADIISHYEERENLVAGKAMIVAYSRKTAFAMYKEIMRQRPDW-  565
             SR+E+++G   RI++V AD++ H+  R+  + GKAMIVA SR     +Y+ ++  RP+W 
Sbjct  533   SRLEKLVGSEPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWH  592

Query  566   -----KEKVKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVNHPFKIVIVVDMWLTGF  620
                  K  +KI+MT +  D E+L   + NKQT+K+ E  FKD+N+P+KIVIV DMWLTGF
Sbjct  593   SEDVEKGEIKIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  621   DVPALDTMYIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKRDLMEALKTYTKRDQ  680
             D P  +TMYIDKPM++HNLMQAIARVNRV+ +K GGL+VDYIG+  +L +ALKTYT   +
Sbjct  653   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTD-SK  711

Query  681   DKVQENEQARD---IALNILEVLRNMF------HEFDYSAFFGDSDKKRYEVIRDGAEFV  731
             +K Q   +ARD   + L+ L+V++ MF        FDYSAF    +++  +V+ D+A+++
Sbjct  712   GKGQTTIDARDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF----ENNPQHVLLDAANYI  767

Query  732   QQTEKRKSLFMTETKKLKDVYKICTGL-LSKEQKEEISYFIAVRSFIMKSSRKGAP-DLK  789
                +  K  +      L+    +C+ L  +K  + E++++ AV+  I+K +  +      
Sbjct  768   LGLDDGKKRYFDVVLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQS  827

Query  790   EVNERISKMLEEAILE---DEVMVLTQASSSESFDLLNEENIKKLRALPQKNIAANILMR  846
             E N  +S++L++AI+    D+V  L+    ++ ++LL++E +  +R +PQ+N+A ++L +
Sbjct  828   EKNSLLSRILDNAIVATGVDDVFALAGLDKPN-IGLLSDEFLEEVREMPQRNLAVELLEK  886

Query  847   VLKEKLQDVKKKNMTVSQTFSKRFEKILEKYNNRNDYTDVYevfeelikfkeeleAAIQA  906
             +L++ ++   ++N+   + +S R+  +L +YNNR    +  +V+EELI+   E++AA+  
Sbjct  887   LLNDGIHARTNNNVVQEKKYSDRLRAVLLRYNNRA--IETAQVIEELIQMAKEFQAAMAR  944

Query  907   GKQLGLTDEEKAFFDVLGSDPDIKKLMEDEILIKIAKELAKTVKENRTHDWDKKEQAQAR  966
             +  LGL  +E AF+D L+ +    + + DE L K+A E++  ++ + T DW+ +E  +AR
Sbjct  945   DDALGLNPDEIAFYDALAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004

Query  967   MRLQIKKVLRKYDYPPNKQPKAVEDVLMQAKL  998
             +R+ ++K L KY YPP+K   AVE +L QA +
Sbjct  1005  LRILVRKTLLKYKYPPDKALDAVELILKQAEV  1036

179) HMPREF0389_01038 in NC_016630


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  601 bits (2270),  Expect = 6e-173, Method: Compositional matrix adjust.
 Identities = 429/1045 (42%), Positives = 691/1045 (67%), Gaps = 71/1045 (6%)

Query  22    GYEYVYGPDIERDFYSPL---YEDVLVDSLYR-----LNRGLPDNAIQDALYKLRNFENG  73
             G E + GPDI  D  +PL   ++DV++ +++R     LN  LP + +++ + ++   E+ 
Sbjct  19    GWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESP  78

Query  74    ELVQKNAIFMDYLQNGIPVRYFVSGEERSSIIYLVDYKNVENNSFIVANQWTFIENSN-K  132
             ++V  N  F + L +G+PV Y   +        L+D+++ ENN F V NQ ++    + +
Sbjct  79    DIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLR  138

Query  133   RPDVILFLNGLPVVLVELKSPSREETDASEAYRQLRNYMHEIPSMFIYNAICVMSDQLIS  192
             RPDVI ++NGLP+ ++ELKSPS  ++D   A+ QL+ Y +EI+ +FI N   V+SD   +
Sbjct  139   RPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNA  198

Query  193   KAGTITSGEDRFMEWKTKDGNYENTQYA-QFDTFFEGMFQKERLLDIIKNFICFSNEGIN  251
             + G++T++E+RF+ WKT   + ++     Q++   +G F++E LLD I+ FI F ++G  
Sbjct  199   RIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKR  258

Query  252   TFKILAGYHQYFAVRKAIEST-----------KHAIITDGK-GGVFWHTQGSGKSLSMVF  299
              +K +A+YHQ+ AVR A+++T           +  I  ++K +GV WHTQGSGKS+SM  
Sbjct  259   LIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCC  318

Query  300   YA-HLLQEA-LESPTIVVLTDRNDLDDQLYSQFAKCKDFLRQEPLQAESRENLKTLLAGR  357
             YA  LLQ+A +++PTIVV+TDRNDLD+QLY+ F + KD+L+QEP QA +R++L+ +LA+R
Sbjct  319   YAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAAR  378

Query  358   KANGIIFTTMQKF-----EESNEPLSERRNIIVMADEAHRGQYGLTEKIKITKNEDGDEV  412
              + GIIFTT+QKF     E+++ +L+ R NI+V++DEAHR+QYGL+  +      D D  
Sbjct  379   ESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATL------DKDGA  432

Query  413   AKRIIGTARIIRNTLPNATYIGFTGTPISAKDRSTREVFGDYIDIYDMTQAVEDGATRPV  472
              K   G A+ +R++LPNA+++GFTGTP+S+ D+ TR VFGDY+ IYD+ +AV+DGAT P+
Sbjct  433   YK--YGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPI  490

Query  473   YYESRVIKLNLDETTLKLIDAEYDLMALNADDEVIEKSKRELGQMEAVLGNDNTINSLVC  532
             YYESR+ KL+L++  L  + ++ D +  + + +  EK+K + +++E ++G++  I+ +  
Sbjct  491   YYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAA  550

Query  533   DIIDHYENNRENLLTGKAMIVAYSRPIAMKIYKKILKLRPAW-TEKVE-----VVMTSGN  586
             D++ H+   R+  + GKAMIVA SR I +++Y+ ++ LRP W +E VE     ++MT++ 
Sbjct  551   DLVKHF-AARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSA  609

Query  587   NDPEEWRQIIGNKHHKNELAKKFKDNSSLMKIAIVVDMWLTGFDVPSLATMYVYKPMSGH  646
             +D E+ +  I NK+ K+ L  +FKD +  +KI IV DMWLTGFD P   TMY+ KPM GH
Sbjct  610   SDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGH  669

Query  647   NLMQAIARVNRVFQDKEGGLVVDYVGIATALKQAMNDYTLRDKKNYGDTDV-AKVAYPKF  705
             NLMQAIARVNRVF+DK GGLVVDY+GIA  LKQA++ YT  D K  G+T + A+ A++ +
Sbjct  670   NLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYT--DSKGKGQTTIDARDAFAVL  727

Query  706   LEKLSVCRDKF------HGYDYTKFINGTDLERAKTISGAVNFIMDREKVDDKDSFVKEA  759
             LEKL V ++ F       G+DY+ F N  +      + +A N+I++ +  D+K  +    
Sbjct  728   LEKLDVIHGMFAKTTTDPGFDYSAFENNPQ----HVLLDAANYILGLD--DGKKRYFDVV  781

Query  760   LMLHQALSLCSSLVD-KDSRFEAAFFEAVRVLVLRLTNTGVDKKISLPEMNARINELLKQ  818
             L L++A SLCS+L + K  + E AF+ AV+V +++LT T  DKK+S +E N+ ++ +L +
Sbjct  782   LALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTT--DKKFSQSEKNSLLSRILDN  839

Query  819   SIKSDGVINLFSDI---KEEFSLFDPKFLQEVANMKEKNLAVELLKKLIAEQVSVYRRTN  875
             +I + GV ++F+     K +++L+   FL+EV +M ++NLAVELL KL+ + +      N
Sbjct  840   AIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNN  899

Query  876   IVKSEKFSEIMQRSLNAYLNGMLTNEEVIEEMLRLAKQIAAAHQEGDKLGLTADELAFYD  935
             +V+  K+S+ ++  L  Y N  +   +VIEE++++AK++ AA   +D LGL +DE+AFYD
Sbjct  900   VVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYD  959

Query  936   ALTKPQ-AIKDFYENEELIAITKELADTLRKNKTIDWQKRESARAKMRMlikkllkkhkY  994
             AL+  + A++++  +E L  ++ E++  LRK+ T+DWQ RES RA++R+L++K L K KY
Sbjct  960   ALAENESAVREL-GDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKY  1018

Query  995   PPEGMDDAVQTVMKQCEL----WTD  1015
             PP+   DAV+ ++KQ E+    WT 
Sbjct  1019  PPDKALDAVELILKQAEVVSNSWTA  1043

180) Ethha_0476 in NC_014828


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  597 bits (2256),  Expect = 7e-172, Method: Compositional matrix adjust.
 Identities = 421/1051 (41%), Positives = 690/1051 (66%), Gaps = 61/1051 (5%)

Query  4     AEANFENAVMILLEELGYAKLYGPDVERDFHNPL-------YLDAL-TGQLPRINPMADR  55
             +E ++E+  +  +   G   L GPD+  D  NPL       +L ++   QL  +NP    
Sbjct  3     SEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPA  62

Query  56    QAVEEALHKLTHIEHGTLLQKNKRFMDWLQNGIEVTYQKGGETKNELVRLIDYEHPEYNM  115
                +E + ++T+ E   ++  NK F + L +G+ V Y++++   ++   L+D++HPE N 
Sbjct  63    SLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNR  122

Query  116   FCAINQWTITE-HETKRPDVAVFVNGLPLVVVELKTCMREDTDFSDGYRQIKNYMKEIPV  174
             F  +NQ +I+   + +RPDV  ++NGLP+ V+ELK+    ++D+  ++ Q++ Y +EI+ 
Sbjct  123   FTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISD  182

Query  175   LFQYNAFCIISDLIDSKVGTITSEFDRFVDWKTVNGDYEETQFAR-YDVLFRGMLEPRRF  233
             LF  N   +ISD  ++++G++T++ +RF+ WKT++ + +   + +  + +  G ++   +
Sbjct  183   LFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELL  242

Query  234   LDILRYFILFSQDIPEDHKILAGYHQYFAVRKAIEST-----------RHAVETDGK-GG  281
             LD +RYFILF  D     K +A+YHQ+ AVR A+++T           R  +  ++K +G
Sbjct  243   LDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAG  302

Query  282   VFWHTQGSGKSLSMVFYAA-LLQQA-LDSPTIIVITDRNDLDDQLYGQFSACKDFLRQTP  339
             V WHTQGSGKS+SM  YA+ LLQQA +++PTI+V+TDRNDLD+QLY  F   KD+L+Q P
Sbjct  303   VVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEP  362

Query  340   EHAQSREHLKELLAGRRANGIFFTTMQKF-----EEAHEPLSERRNIIVMADEAHRSQYG  394
             ++A +R++L+E+LA+R + GI+FTT+QKF     E+AH +L+ R NI+V++DEAHRSQYG
Sbjct  363   QQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYG  422

Query  395   LTERVKKDGTLVVGAARVIRDSLPDATFIGFTGTPISSKDRDTRAVFGDYIDIYDMTQAV  454
             L+  + KDG+   G A+ +RD+LP+A+F+GFTGTP+SS D+DTRAVFGDY+ IYD+ +AV
Sbjct  423   LSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAV  482

Query  455   EDGATRPVYYESRVMNLGLKEDVLRQIDTTYELLAQNANEQDIERSKKELGNLEAILSAP  514
             +DGAT P+YYESR+ +L+L+++ L  + +  + L ++ + ++ E++K + + LE ++++ 
Sbjct  483   DDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSE  542

Query  515   ETIDTLCRDIIAHYEQNREHLLTGKAMIVAYSRSIAIDIYHKLLELRPGWQK------KV  568
               I  +  D++ H+   R+  + GKAMIVA SR I + +Y+ L+ LRP W+        +
Sbjct  543   PRIKQVAADLVKHFA-ARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEI  601

Query  569   KVVMTSGNNDPEEWRNIIGNKSYKRELARKFKDNDDSLKIAIVVDMWLTGFDVPSLATMY  628
             K++MT++ +D E+ +  I NK  K+ L  +FKD +D+LKI IV DMWLTGFD P   TMY
Sbjct  602   KIIMTGSASDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMY  661

Query  629   VYKPMSGHNLMQAIARVNRVFRDKEGGLVVDYIGIARALKRAMNDYTVRDRSNYGNLDIA  688
             + KPM GHNLMQAIARVNRVF+DK GGLVVDYIGIA  LK+A++ YT         +D A
Sbjct  662   IDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTID-A  720

Query  689   KTALPKFEEKLRVCGELLY------GFDYSAFLLETSNDRQRADLIAGCINFVLGKNADT  742
             + A++ + EKL V   ++       GFDYSAF      + +  +++ +  N++LG + + 
Sbjct  721   RDAFAVLLEKLDVIHGMFAKTTTDPGFDYSAF------ENNPQHVLLDAANYILGLDDGK  774

Query  743   QKTFATEALLLKQARTLCQSLLN-REQRMESALFEAVRVALSRISGTQ-KLSLKEINDRI  800
             ++ F    L L++A++LC +L + +  + E A++ AV+VA+ +++ T+ K+S  E N  +
Sbjct  775   KRYFDV-VLALNKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLL  833

Query  801   NEMLQQSVHSEGVINLF---GEQSAEFSLFDPAFLEEISRMKQKNlaaellrkllaeQIS  857
             + +L++++ + GV ++F   G + ++++L+   FLEE+  M Q+NLA ELL KLL + I 
Sbjct  834   SRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIH  893

Query  858   AYQHTNLVQAEKFSDRMQKLMNAYRNGQITNAEVIEELQKMAADIAKAHQTGASLGLSPE  917
             A  + N+VQ  K+SDR++ ++  Y N  I  A+VIEEL +MA ++  A   + +LGL+P+
Sbjct  894   ARTNNNVVQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPD  953

Query  918   ELAFYDAITRPE-AVKDFYTNDQLLHMTKELADTLRRSRTVDWQKKESARAQMRVMVKRL  976
             E+AFYDA++  E AV+++  ++ L  ++ E++  LR+S TVDWQ +ES RA++R++V++ 
Sbjct  954   EIAFYDALAENESAVREL-GDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKT  1012

Query  977   LRKYKYPPDGMQDAIQTVLAQCEL----WTD  1003
             L KYKYPPD   DA++ +L Q E+    WT 
Sbjct  1013  LLKYKYPPDKALDAVELILKQAEVVSNSWTA  1043

181) Mpet_1680 in NC_014507


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  593 bits (2240),  Expect = 2e-170, Method: Compositional matrix adjust.
 Identities = 414/1032 (41%), Positives = 651/1032 (64%), Gaps = 65/1032 (6%)

Query  26    YGPEVDRDYHNPL---YEEQLLSS-----LETINPKLPQTAIEEAVYKLKNIGTGTLVQK  77
              GP++  D  NPL   +++ +L +     LET+NP LP + ++E + ++    +  +V  
Sbjct  24    HGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVS  83

Query  78    NFIFTDYLQNGIPVKYYDGKEERSAIVYLVDYQNPANNTFHVINQWTVVDEVE-KRPDIV  136
             N  F + L +G+PV Y  +         L+D+++P NN F V+NQ ++ +  + +RPD++
Sbjct  84    NKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENNRFTVVNQVAISGTKQLRRPDVI  143

Query  137   IFVNGLPLVVVELKSPSREETDVSEAYRQLRNYLHDIPSLFVYNAFCVMSDHATSKAGTI  196
              ++NGLP+ V+ELKSPS  ++D+  A+ QL+ Y ++I+ LF+ N   V+SD   ++ G++
Sbjct  144   CYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGSL  203

Query  197   TADEDRYMEWKTVDGSYENTQYA-AFDVLFEGIFEKERFLDILKNFICFSKETPEDKKIL  255
             TADE+R++ WKT+    ++      ++ + +G+F++E +LD ++ FI F  +     K +
Sbjct  204   TADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKKI  263

Query  256   GAYHQYFAVKKALQST------------KEATLTDGKGGVFWHTQGSGKSLSMVFYAKQL  303
             +AYHQ+ AV+ A+++T             +      K+GV WHTQGSGKS+SM  YA +L
Sbjct  264   AAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGKL  323

Query  304   --REVLDSPTIVVITDRNDLDGQLFGQFSACEDYLRQTPVQAESRADLKMLILNREVNGI  361
               +  +++PTIVV+TDRNDLDGQL+  F    D L+Q P QA +R +L+ ++  RE  GI
Sbjct  324   LQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGI  383

Query  362   IFTTMQKF-----EEYDAPLSKRRNIVVIADEAHRSQYGFEEKVHPKTGKIRIGSARKVR  416
             IFTT+QKF     E+ +++L+ R NIVVI+DEAHRSQYG+   ++ K G  + G A+ +R
Sbjct  384   IFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHMR  442

Query  417   DSLPNATYIGFTGTPVSLADRNTREIFGDYIDIYDMTQSVEDNATVPIYYESRVVALKLD  476
             D+LPNA+++GFTGTPVS  D++TR +FGDY+ IYD+ ++V+D ATVPIYYESR+  L L+
Sbjct  443   DALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLN  502

Query  477   ESILHEIDDEYDRVAEEAEEYIVEKSKHELGRLESILGAPETITTLCEDIIKHYETYRQY  536
             +  L+ +  + D + E+ E    EK+K + +RLE ++G+   I  +  D++KH+ + R+ 
Sbjct  503   HEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAA-RNA  561

Query  537   EQTGKAMIVAYSRPIAMKVYRRILELRPEW------KEKLGVVMTSDNNDPEDWREVIGN  590
                GKAMIVA SR I +++Y  ++ LRPEW      K  + ++MT+  +D E+ +  I N
Sbjct  562   TMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIYN  621

Query  591   KKHKENMAGKFKDNNDPLKIAIVVDMWLTGFDVPSLSTMYVYKPMTGHNLMQAIARVNRV  650
             K+ K  + ++FKD NDPLKI IV DMWLTGFD P   TMY+ KPM GHNLMQAIARVNRV
Sbjct  622   KQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRV  681

Query  651   YKDKQGGLIVDYVGIAGALRKAMKDYTGRDRKNYGNPDI-GKTAYPKFREKLEVCRDLF-  708
             +KDK GGL+VDY+GIA  L++A+K YT  D K  G+  I ++ A++ + EKL+V +++F 
Sbjct  682   FKDKPGGLVVDYIGIANELKQALKTYT--DSKGKGQTTIDARDAFAVLLEKLDVIHGMFA  739

Query  709   -----HGFDYSVFETGTDLERAKLITGGVNYISHPSKEEKRNAFVRESLLLRHAMSLCRS  763
                   GFDYS FE   +     ++ ++ NYI       KR  +    L L  A SLC +
Sbjct  740   KTTTDPGFDYSAFENNPQ----HVLLDAANYILGLDDGKKR--YFDVVLALNKAWSLCST  793

Query  764   LLDQNERF--EAAYFEAVRTLLTRIEGKGK-LSLREINNRINELLKQSIRSEGVINLFSD  820
             L D+   +  E A++ AV+  + ++   +K +S  E N+ ++ +L ++I + GV ++F+ 
Sbjct  794   L-DEAKPLQKELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDVFAL  852

Query  821   V---KEKYSLFDPAFLSEIARMKEKNLAVELLKKLLMEQIRVYSRTNVVKSAKFSELLAE  877
                 K + +L+   FL E+  M ++NLAVELL KLL + I+  +  NVV+  K+S+ L  
Sbjct  853   AGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDRLRA  912

Query  878   AMNSYINGMLTNEQVIEELLKIAKDMAEAHKEGEELGLNPEEMAFYDALTKPE-AVKDFY  936
              +  Y N  +   QVIEEL+++AK+   A   ++ LGLNP+E+AFYDAL+  E AV+++ 
Sbjct  913   VLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVREL-  971

Query  937   ENDELVAITKELTELLRKNKTIDWQKKETARAGMRRLVKRLLKQHKYPPEGMEDAVSTVL  996
              ++ L  ++ E+T  LRK+ T+DWQ +E+ RA +R LV++ L + KYPP+   DAV  +L
Sbjct  972   GDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPPDKALDAVELIL  1031

Query  997   AQCEM----WTD  1004
              Q E+    WT 
Sbjct  1032  KQAEVVSNSWTA  1043

182) SAT0131_02861 in NC_017347


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  587 bits (2216),  Expect = 8e-169, Method: Compositional matrix adjust.
 Identities = 350/740 (48%), Positives = 543/740 (74%), Gaps = 27/740 (3%)

Query  1     MVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKE  58
             M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +K+LL+Q P+QA  R +
Sbjct  316   MCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQ-----AKDLLKQEPQQASNRDQ  370

Query  59    LKSLLSV-ESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNakyddk  117
             L+ +L+  ESGGI+FTT+QKF P + E + +AL  R N++V++DEAHR+QYG++A  D  
Sbjct  371   LREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLDKD  430

Query  118   gggikygyakyLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVK  177
             G+         +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+ +YD+ +AV DG+TV 
Sbjct  431   GAYKYGYAKH-MRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVP  489

Query  178   IYYESRIIPLNLPQN-LD-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALA  235
             IYYESR+  L+L ++ L+ L    +D+ ED+E D K++ K+ WSR+E L G+ PR+  +A
Sbjct  490   IYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVA  549

Query  236   KDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSS  295
              D+++HF +R+ +M+GK+MIV+MSR I V LY+ ++ L+PEWHS+D +KG IK++MTGS+
Sbjct  550   ADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSA  609

Query  296   SDPTSFQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGH  355
             SD   +Q HI  K+ ++ LE R KD+ND L++VIVRDMWLTGFD P  HTMYIDKPM+GH
Sbjct  610   SDKEHLQPHIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGH  669

Query  356   NLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLL  414
             NLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S +++QT+ID+  A  ++L 
Sbjct  670   NLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGKGQTTIDARDAFAVLLE  729

Query  415   KYDVIQDMLYN------LDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTEL  468
             K DVI++M+ +      +DYS F+++ +      + D+ +Y++GL +D ++R++  V  L
Sbjct  730   KLDVIHGMFAKTTTDPGFDYSAFENNPQH----VLLDAANYILGL-DDGKKRYFDVVLAL  784

Query  469   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  528
              KA +LC+T   A+ L+ E+AF+ AVK +++KL    K    + + +E ++ +++++ ++
Sbjct  785   NKAWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KFSQSEKNSLLSRILDNA  840

Query  529   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  588
             +V+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL++LL++ + +  + N 
Sbjct  841   IVATGVDDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNV  900

Query  589   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  648
                K++S+ L   + +YN+R+IET++VIEELIQ+AK+++    R++ LGLN+DEIAFYDA
Sbjct  901   VQEKKYSDRLRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDA  960

Query  649   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  708
             LA +E+A   +GD  L+ +A E+T  ++ +  VDW  R+S +A++R+ VR+ L KY YPP
Sbjct  961   LAENESAVRELGDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILVRKTLLKYKYPP  1020

Query  709   DLQKMAVEQVVEQAELMASN  728
             D    AVE ++ QAE+++++
Sbjct  1021  DKALDAVELILKQAEVVSNS  1040

183) Desru_3588 in NC_015589


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  582 bits (2199),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 415/1001 (42%), Positives = 650/1001 (65%), Gaps = 70/1001 (6%)

Query  27    GPDVVRDYSDPL---YTDELL-PALRR----VNSKLPEVALSEAVYKLRNFEGGTVLQKN  78
             GPD+  D  +PL   + D +L P +R+    +N+ LP   + E + ++   E+  ++  N
Sbjct  25    GPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLPASLFDEIISRITRPESPDIVVSN  84

Query  79    VQFMDYLQNGVSVNYY--DKGEQRSALVQLVDFDNIKQNTFTVANQWTITENSE-KRPDV  135
               F + L +GV+V+Y   DK  + +AL  L+DF++  +N FTV NQ +I+   + +RPDV
Sbjct  85    KAFHHLLLSGVPVEYKRDDKVIHDTAL--LMDFNHPENNRFTVVNQVAISGTKQLRRPDV  142

Query  136   IVFLNGLPVVVFELKSPSREETDASEAYRQLRNYMKEIPSLFIYNAFLVMSDLATSKAGT  195
             I ++NGLP+ V+ELKSPS  ++D   A+ QL+ Y +EI+ LFI N  LV+SD   ++ G+
Sbjct  143   ICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEISDLFICNEALVISDGYNARIGS  202

Query  196   ITADEDRFMEWKTKDGSYENTQYA-QFDTFIEGMFEKGRLLDIIKNFICFSGDAKIL---  251
             +TADE+RF+ WKT     ++     Q++  ++G F++  LLD I+ FI F +D+K L   
Sbjct  203   LTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNRELLLDYIRYFILFESDGKRLIKK  262

Query  252   -GAYHQYFAVRKAITST------------AKATETDGRGGVFWHTQGSGKSLSMVFYA-H  297
              +AYHQ+ AVR A+ +T            ++      ++GV WHTQGSGKS+SM  YA  
Sbjct  263   IAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKAGVVWHTQGSGKSISMCCYAGK  322

Query  298   LLQEI-LNSPTIVVLTDRNDLDDQLFGQFAKCADFLRQTPQQAESRIHLKELLAGRQANG  356
             LLQ+  +N+PTIVV+TDRNDLD+QL+  F +  D+L+Q PQQA +R +L+E+LA+R++ G
Sbjct  323   LLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGG  382

Query  357   IIFTTMQKF-----EESSEALSDRRNIIVMADEAHRGQYGLEEKVDAKTGRVILGTARII  411
             IIFTT+QKF     E++  AL+ R NI+V++DEAHR+QYGL   +D K G    G A+ +
Sbjct  383   IIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQYGLSATLD-KDGAYKYGYAKHM  441

Query  412   RDSLPNATYIGFTGTPISSKDRSTIEVFGNYIDIYDMTQAVEDGATRPVYYESRVIHLKL  471
             RD+LPNA+++GFTGTP+SS D+ T  VFG+Y+ IYD+ +AV+DGAT P+YYESR+  L L
Sbjct  442   RDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDL  501

Query  472   DEDVLQLIDAEYDIMGENAEPYAIEKSKKELGQMESILGADQTITALCEDIVKHYEENRQ  531
             +++ L+ + ++ D + E+ E    EK+K + +++E ++G++  I  +  D+VKH+   R+
Sbjct  502   NHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFA-ARN  560

Query  532   YELTGKAMIVAYSRPIAMKIYHKILQMRPDW------TEKLGVVMTSGNNDPEEWREIIG  585
               + GKAMIVA SR I +++Y+ ++ +RP+W         + ++MT++ +D E+ +  I 
Sbjct  561   ATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEIKIIMTGSASDKEHLQPHIY  620

Query  586   NKRHKDEMAKKFKDNNSPLKIAIVVDMWLTGFDVPSLATMYVYKPMAGHNLMQAIARVNR  645
             NK+ K  +  +FKD N PLKI IV DMWLTGFD P   TMY+ KPM GHNLMQAIARVNR
Sbjct  621   NKQTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNR  680

Query  646   VYKNKEGGLVVDYVGIASALKQAMNDYTNRDKQNYGEQDI-AKTALPKFIEKLEVCRDLF  704
             V+K+K GGLVVDY+GIA+ LKQA++ YT+   +  G+  I A+ A++ ++EKL+V +++F
Sbjct  681   VFKDKPGGLVVDYIGIANELKQALKTYTDSKGK--GQTTIDARDAFAVLLEKLDVIHGMF  738

Query  705   ------HGFDYAGFMDAKATDLARAKAISGGVNFLSGIDKEKQRESFVKEAMLLRQALSL  758
                    GFDY++F      +      + ++ N++ G+D  K+R  +    + L +A SL
Sbjct  739   AKTTTDPGFDYSAF------ENNPQHVLLDAANYILGLDDGKKR--YFDVVLALNKAWSL  790

Query  759   CRSL--LKPEQRFEAAYFEAVRTLLTRITGEGKPLSLKEINARVNELLKASIQSEGVINL  816
             C +L   KP Q+ E A++ AV+  + ++T  +K +S  E N+ ++ +L  +I + GV ++
Sbjct  791   CSTLDEAKPLQK-ELAFLSAVKVAIIKLTTTDKKFSQSEKNSLLSRILDNAIVATGVDDV  849

Query  817   F--SDID-TGFSLFDPKFLEEIAKMKERNLAVEILKKLLAEQVSLYRRTNLVKSEKFSEM  873
             F  +++D   ++L+   FLEE+  M +RNLAVE+L KLL + +      N+V+  K+S+ 
Sbjct  850   FALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELLEKLLNDGIHARTNNNVVQEKKYSDR  909

Query  874   LSRAMKAYLNGMLSNEEVIAELMKMAKDMANAQAEGDALGLNDEELAFYDALTRPE-AVK  932
             L   +  Y N  +   +VI EL++MAK+   A A +DALGLN +E+AFYDAL+  E AV+
Sbjct  910   LRAVLLRYNNRAIETAQVIEELIQMAKEFQAAMARDDALGLNPDEIAFYDALAENESAVR  969

Query  933   DFYQNEELVAMTHELTDMLRKNRTIDWQKKESARAGMRRMV  973
             ++  +E L  ++ E+T  LRK+ T+DWQ +ES RA +R +V
Sbjct  970   EL-GDETLKKLAIEVTAQLRKSTTVDWQVRESVRARLRILV  1009

184) M493_07025 in NC_022080


> AJ627388|55|G54|49658900|CAF28526.1|Yersinia_pseudotuberculosis_32777|+|53441..56572|api52|-|hsdr-like 
Type I restriction 
enzyme
Length=1043

 Score =  405 bits (1525),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 300/744 (41%), Positives = 455/744 (62%), Gaps = 45/744 (6%)

Query  6    LGETEFEETTIERLKRLGYDYLHAQELFQRGE---RNSLHEVVLYGRLEAFLKKAYPAIP  62
            L+E ++E+ ++ ++   G + LH+ ++   G    R S+H+V L   +   L    P +P
Sbjct  2    LSEDDLEQLSLGWFAGQGWEVLHGPDIAPDGKNPLRISFHDVFLRPIFRKQLETLNPHLP  61

Query  63   EHEIKRLAQVLTAPDEVKLINRNMHFHKMLTKGLEFSYEVNDETYTPHVFPIDWEHPENN  122
               +  +   +T P+   ++  N  FH +L  G+   Y  +D       + +D +HPENN
Sbjct  62   ASLFDEIISRITRPESPDIVVSNKAFHHLLLSGVPVEYKRDDKVIHDTALLMDFNHPENN  121

Query  123  DFLVVNQLSIEGRMS-RRPDIVIYINGLPLIVFELKNPNNEQATVYDAYTQIQNYTYDIS  181
             F VVNQ++I G    RRPD++ YINGLP+ V+ELK+P++ +A +  A+ Q+Q Y  +IS
Sbjct  122  RFTVVNQVAISGTKQLRRPDVICYINGLPIAVIELKSPSDVNADIWAAFNQLQTYKNEIS  181

Query  182  QLFNYNAFVVISDNVETKHGMPFADYDFFASWKSIDGRNVDNNRANTMRTLIEGLFPKDR  241
            +LF  N  +VISD  +++ G   AD + F +WK+I   +      + +  +++G+F ++ 
Sbjct  182  DLFICNEALVISDGYNARIGSLTADEERFLPWKTISNEDDKPLLEHQLENVVNGFFNREL  241

Query  242  LLNYIRNFIVFLEEGSKITKVGAKYHQFFGVNFAVNEAI----------RATRPDGDRKI  291
            LL+YIR FI+F  +G ++ K  A YHQF +V  AVN +I          R+    G +K 
Sbjct  242  LLDYIRYFILFESDGKRLIKKIAAYHQFHAVREAVNATIVASTGKFLPLRSNIKPGSKKA  301

Query  292  GVMYHTTGSGKSLSMLFFVGILSRHPEMENPSIVIQVDRNDLDEQLHDTFVQGKSYIGH-  350
            GV+ HT GSGKS+SM  + G L +++EM+NP+IV+  DRNDLD QL  TF Q+K  + + 
Sbjct  302  GVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYTTFCQAKDLLKQE  361

Query  351  VHHAENTEQLRTLLRG-EAGQIIFSTIEKFRKKEGETRHPVLSERRNIVVIADEAHRTQa  409
             ++A N +QLR +L + E+G IIF+T++KF   +GE  HP L+ R NIVVI+DEAHR+Q 
Sbjct  362  PQQASNRDQLREMLAARESGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISDEAHRSQY  421

Query  410  gfaggf----------aaQLRYALPNASYIGFTGTPVDFVDNNTEEIFGHIIHRYDMAQA  459
            G+++ +          A ++R ALPNAS++GFTGTPV   D++T  +FG+ +  YD+ +A
Sbjct  422  GLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYVSIYDIQDA  481

Query  460  VEDKATLPIYYESRLIPLDLSAGDIDE-KYRKiieeaggddeesesYKRKWAALEKVVGT  518
            V+D AT+PIYYESRL  LDL+  +++    +      + + ++ E  K  W+ LEK+VG+
Sbjct  482  VDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEETDQKEKTKGDWSRLEKLVGS  541

Query  519  PKRLRRLAKDIVSHFNQVANPFQ-KAMIVCMSRRIAVDLYNYL--------REIPECPPV  569
              R++++A D+V HF       + KAMIV MSR I V LYN L         E  E   +
Sbjct  542  EPRIKQVAADLVKHFAARNATMNGKAMIVAMSRDICVRLYNALVALRPEWHSEDVEKGEI  601

Query  570  EVIMTGDVSKDPKEWREVQPGSKYAHIKSKKEQEEVKAKLRDPEDPLKFVIVVDMWLTGM  629
             +IMTG  S       ++QP     HI +K+ +  + A+++D +DPLK+VIV DMWLTG 
Sbjct  602  KIIMTGSASDKE----HLQP-----HIYNKQTKKRLEARFKDLNDPLKIVIVRDMWLTGF  652

Query  630  DAKPLSYLYIDKPMKGHNLMQAIARVNRVFPGKEGGVVVDYIGIATSLKEATHKYTQSGG  689
            DA     +YIDKPM+GHNLMQAIARVNRVF +K GG+VVDYIGIA  LK+A   YT+S G
Sbjct  653  DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKG  712

Query  690  TGSPTYDISEAVNIFMDHLEAVRG  713
             G  T D  +A  ++++ L+ ++G
Sbjct  713  KGQTTIDARDAFAVLLEKLDVIHG  736