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Homologs of int-phe gene of AF453441

492

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECO111_5079
( YP_003237359.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

0.0

100

2) ECO26_5300
( YP_003232178.1 )

integrase

NC_013361
(Escherichia coli 11368)

0.0

100

3) ECO103_3550
( YP_003223418.1 )

integrase

NC_013353
(Escherichia coli 12009)

0.0

100

4) ECO103_4929
( YP_003224745.1 )

integrase

NC_013353
(Escherichia coli 12009)

0.0

100

5) E2348C_3220
( YP_002330696.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

0.0

100

6) intB
( YP_003501106.1 )

Site-specific recombinase, phage integrase family protein

NC_013941
(Escherichia coli CB9615)

0.0

7) ECH74115_4272
( YP_002272448.1 )

site-specific recombinase, phage integrase family protein

NC_011353
(Escherichia coli EC4115)

0.0

8) Z4313
( NP_289539.1 )

pathogenicity island integrase

NC_002655
(Escherichia coli EDL933)

0.0

9) ECO55CA74_17295
( YP_006160577.1 )

Site-specific recombinase, phage integrase family protein

NC_017656
(Escherichia coli RM12579)

0.0

10) ECs3843
( NP_311870.1 )

integrase

NC_002695
(Escherichia coli Sakai)

0.0

11) ECSP_3940
( YP_003079757.1 )

pathogenicity island integrase

NC_013008
(Escherichia coli TW14359)

0.0

12) CDCO157_3594
( YP_006314460.1 )

integrase

NC_017906
(Escherichia coli Xuzhou21)

0.0

13) int
( YP_002400684.1 )

Prophage integrase

NC_011745
(Escherichia coli ED1a)

0.0

14) EC042_3174
( YP_006097466.1 )

integrase

NC_017626
(Escherichia coli 042)

0.0

15) c5216
( NP_757064.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

0.0

16) EC042_4610
( YP_006098876.1 )

integrase

NC_017626
(Escherichia coli 042)

0.0

17) O3M_04655
( YP_006768605.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

18) O3O_21040
( YP_006782711.1 )

Prophage integrase

NC_018661
(Escherichia coli 2009EL-2071)

0.0

19) O3K_04610
( YP_006777642.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

0.0

20) ECP_2962
( YP_670846.1 )

P4-type integrase

NC_008253
(Escherichia coli 536)

0.0

21) int
( YP_002404232.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

0.0

22) EcE24377A_3314
( YP_001464322.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

0.0

23) UMNK88_3667
( YP_006135366.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

0.0

24) EcolC_3878
( YP_001726809.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

0.0

25) APECO1_3534
( YP_854214.1 )

P4-like integrase

NC_008563
(Escherichia coli APEC O1)

0.0

26) CE10_4872
( YP_006146828.1 )

Prophage integrase

NC_017646
(Escherichia coli CE10)

0.0

27) int
( YP_002392871.1 )

Prophage integrase

NC_011742
(Escherichia coli S88)

0.0

28) ROD_50201
( YP_003368377.1 )

integrase

NC_013716
(Citrobacter rodentium ICC168)

0.0

29) int
( YP_002410463.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

0.0

30) ECO111_3718
( YP_003236059.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

0.0

31) ECO26_4069
( YP_003230994.1 )

integrase

NC_013361
(Escherichia coli 11368)

0.0

32) int
( YP_002409310.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

0.0

33) c3556
( NP_755431.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

0.0

34) ECED1_3430
( YP_002399303.1 )

integrase

NC_011745
(Escherichia coli ED1a)

0.0

35) EcolC_0747
( YP_001723746.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

0.0

36) ECABU_c32560
( YP_006107255.1 )

site-specific recombinase

NC_017631
(Escherichia coli ABU 83972)

0.0

37) int
( YP_859807.1 )

Int ( P4-type integrase)

NC_008563
(Escherichia coli APEC O1)

0.0

38) CE10_3417
( YP_006145430.1 )

integrase

NC_017646
(Escherichia coli CE10)

0.0

39) i14_3273
( YP_006155358.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

0.0

40) i02_3273
( YP_006150439.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

0.0

41) int
( YP_006141472.1 )

Integrase

NC_017644
(Escherichia coli NA114)

0.0

42) ECS88_4720
( YP_002394207.1 )

integrase

NC_011742
(Escherichia coli S88)

0.0

43) ECUMN_3322
( YP_002414004.1 )

integrase

NC_011751
(Escherichia coli UMN026)

0.0

44) O3M_22875
( YP_006772189.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

45) O3K_22970
( YP_006781250.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

0.0

46) int
( YP_002405550.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

0.0

47) SFxv_3245
( YP_005728584.1 )

Site-specific recombinase, phage integrase family protein

NC_017328
(Shigella flexneri 2002017)

0.0

48) S4822
( NP_838459.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

0.0

49) SF2964
( NP_708738.1 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

0.0

50) ETEC_4481
( YP_006118020.1 )

KpLE2 phage-like element; predicted integrase

NC_017633
(Escherichia coli ETEC H10407)

0.0

51) ETEC_3157
( YP_006116702.1 )

phage integrase

NC_017633
(Escherichia coli ETEC H10407)

0.0

52) S70_06120
( YP_006215787.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

2e-169

53) S70_13465
( YP_006217222.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

2e-169

54) EAE_09085
( YP_004592016.1 )

prothage integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

3e-158

55) YpsIP31758_0809
( YP_001399793.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-157

56) SbBS512_E4662
( YP_001882825.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

1e-150

57) SSON53_18230
( YP_005458150.1 )

P4-type integrase

NC_016822
(Shigella sonnei 53G)

1e-150

58) SBO_4322
( YP_410566.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

3e-150

59) EcSMS35_4753
( YP_001746674.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

5e-149

60) D782_3965
( YP_007342049.1 )

Integrase

NC_020063
(Enterobacteriaceae bacterium FGI 57)

6e-149

61) APECO78_02320
( YP_007379647.1 )

phage integrase family site specific recombinase

NC_020163
(Escherichia coli APEC O78)

2e-148

62) CE10_5017
( YP_006146968.1 )

phage integrase family site specific recombinase

NC_017646
(Escherichia coli CE10)

2e-148

63) CFSAN001992_11535
( YP_007472047.1 )

phage integrase family site-specific recombinase

NC_020307
(Salmonella enterica CFSAN001992)

9e-148

64) EKO11_4021
( YP_005279654.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

4e-147

65) KO11_23100
( YP_006166928.1 )

site-specific recombinase, phage integrase family protein

NC_017660
(Escherichia coli KO11FL)

4e-147

66) LY180_22530
( YP_008567507.1 )

integrase

NC_022364
(Escherichia coli LY180)

4e-147

67) ECW_m4652
( YP_006127166.1 )

putative P4-type integrase

NC_017635
(Escherichia coli W)

4e-147

68) WFL_22655
( YP_006175953.1 )

site-specific recombinase, phage integrase family protein

NC_017664
(Escherichia coli W)

4e-147

69) i14_4873a
( YP_006156926.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

2e-146

70) i02_4873a
( YP_006152007.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

2e-146

71) ECP_4521
( YP_672358.1 )

prophage P4 integrase

NC_008253
(Escherichia coli 536)

5e-146

72) ECABU_c48360
( YP_006108746.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

5e-146

73) UM146_21610
( YP_006113162.1 )

prophage P4 integrase

NC_017632
(Escherichia coli UM146)

5e-146

74) Ser39006_0951
( YP_008521333.1 )

protein of unknown function DUF4102

NC_022268
(Serratia sp. ATCC 39006)

6e-146

75) intB
( YP_543812.1 )

prophage P4 integrase

NC_007946
(Escherichia coli UTI89)

1e-145

76) H650_18245
( YP_008109403.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

4e-145

77) ECA2879
( YP_050970.1 )

integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

1e-144

78) EKO11_4043
( YP_005279675.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

1e-144

79) KO11_22995
( YP_006166907.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

1e-144

80) LY180_22420
( YP_008567485.1 )

integrase

NC_022364
(Escherichia coli LY180)

1e-144

81) WFL_22550
( YP_006175932.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

1e-144

82) EBL_c34780
( YP_006321045.1 )

prophage P4 integrase

NC_017910
(Escherichia blattae DSM 4481)

3e-144

83) EAM_3037
( YP_003540101.1 )

integrase

NC_013971
(Erwinia amylovora ATCC 49946)

6e-144

84) intB
( YP_003529741.1 )

integrase

NC_013961
(Erwinia amylovora CFBP1430)

6e-144

85) PAGR_g3659
( YP_005994368.1 )

integrase

NC_017554
(Pantoea ananatis PA13)

7e-144

86) YPK_3676
( YP_001722396.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

8e-144

87) ECENHK_02620
( YP_006577041.1 )

phage integrase family site-specific recombinase

NC_018405
(Enterobacter cloacae ENHKU01)

1e-143

88) H650_18115
( YP_008109377.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

2e-143

89) YpAngola_A4051
( YP_001608341.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

2e-143

90) Dd586_0394
( YP_003331995.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

2e-143

91) Entcl_3878
( YP_003943402.1 )

integrase family protein

NC_014618
(Enterobacter cloacae SCF1)

2e-143

92) intB
( NP_992037.1 )

integrase

NC_005810
(Yersinia pestis 91001)

3e-143

93) A1122_08715
( YP_005521414.1 )

integrase

NC_017168
(Yersinia pestis A1122)

3e-143

94) YPA_2939
( YP_652846.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

3e-143

95) intB
( YP_002348329.1 )

integrase

NC_003143
(Yersinia pestis CO92)

3e-143

96) intB
( YP_005506227.1 )

integrase

NC_017154
(Yersinia pestis D106004)

3e-143

97) intB
( YP_005510085.1 )

integrase

NC_017160
(Yersinia pestis D182038)

3e-143

98) intB
( NP_668085.1 )

integrase

NC_004088
(Yersinia pestis KIM)

3e-143

99) YPN_0651
( YP_646583.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

3e-143

100) intB
( YP_003569204.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

3e-143

101) A225_0566
( YP_006496338.1 )

integrase

NC_018106
(Klebsiella oxytoca E718)

5e-143

102) YPDSF_3248
( YP_001164578.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-142

103) intB
( YP_004950346.1 )

prophage P4 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

2e-142

104) Ent638_0463
( YP_001175202.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

3e-142

105) intB
( YP_005625501.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

3e-142

106) SbBS512_E4814
( YP_001882951.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

7e-142

107) EC042_4741
( YP_006098991.1 )

integrase

NC_017626
(Escherichia coli 042)

9e-142

108) KPN2242_01530
( YP_005952795.1 )

site-specific recombinase, phage integrase family protein

NC_017540
(Klebsiella pneumoniae KCTC 2242)

1e-141

109) CFSAN002050_05850
( YP_008259116.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

5e-141

110) KPK_4978
( YP_002240755.1 )

phage integrase family site-specific recombinase

NC_011283
(Klebsiella pneumoniae 342)

6e-141

111) int
( YP_002389727.1 )

Prophage integrase

NC_011741
(Escherichia coli IAI1)

2e-139

112) Ser39006_3432
( YP_008523814.1 )

integrase family protein

NC_022268
(Serratia sp. ATCC 39006)

3e-139

113) ECO103_5061
( YP_003224874.1 )

integrase

NC_013353
(Escherichia coli 12009)

4e-139

114) KOX_09480
( YP_005017861.1 )

phage integrase family protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

6e-139

115) intB
( YP_002405686.1 )

integrase; KpLE2 phage-like element

NC_011748
(Escherichia coli 55989)

1e-138

116) YpsIP31758_3540
( YP_001402494.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-138

117) ECO55CA74_24440
( YP_006161977.1 )

Prophage integrase

NC_017656
(Escherichia coli RM12579)

2e-138

118) intB
( YP_002400869.1 )

putative integrase; KpLE2 phage-like element

NC_011745
(Escherichia coli ED1a)

3e-138

119) ETAC_14745
( YP_007630430.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

4e-138

120) EcDH1_3727
( YP_006093621.1 )

integrase family protein

NC_017625
(Escherichia coli DH1)

4e-138

121) intB
( YP_006131525.1 )

site-specific recombinase

NC_017638
(Escherichia coli DH1)

4e-138

122) ETEC_4611
( YP_006118149.1 )

putative phage integrase

NC_017633
(Escherichia coli ETEC H10407)

4e-138

123) intB
( YP_002410602.1 )

putative integrase; KpLE2 phage-like element

NC_011750
(Escherichia coli IAI39)

4e-138

124) intB
( YP_001733029.1 )

KpLE2 phage-like element; integrase

NC_010473
(Escherichia coli K-12)

4e-138

125) intB
( YP_492408.1 )

integrase

NC_007779
(Escherichia coli K-12)

4e-138

126) intB
( YP_002415396.1 )

putative integrase; KpLE2 phage-like element

NC_011751
(Escherichia coli UMN026)

4e-138

127) intB
( YP_003001820.1 )

intB

NC_012892
(Escherichia coli BL21(DE3))

5e-138

128) intB
( YP_003056695.1 )

integrase

NC_012971
(Escherichia coli BL21(DE3))

5e-138

129) ECBD_3766
( YP_003037938.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

5e-138

130) intB
( YP_006171360.1 )

Prophage P4 integrase (Int(P4))

NC_017663
(Escherichia coli P12b)

5e-138

131) intB
( YP_003047305.1 )

putative integrase

NC_012967
(Escherichia coli REL606)

5e-138

132) ETAF_2789
( YP_005700383.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

6e-138

133) SARI_03082
( YP_001572064.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

6e-138

134) W5S_1543
( YP_006282507.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

7e-138

135) CKO_03532
( YP_001455048.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

1e-136

136) Pecwa_1669
( YP_003259066.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-136

137) SPC_4619
( YP_002640109.1 )

integrase

NC_012125
(Salmonella enterica RKS4594)

9e-136

138) SFV_4227
( YP_691515.1 )

P4-type integrase

NC_008258
(Shigella flexneri 8401)

1e-134

139) SFxv_4606
( YP_005729812.1 )

putative P4-type integrase

NC_017328
(Shigella flexneri 2002017)

4e-134

140) S4839
( NP_839619.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

4e-134

141) SF4224
( NP_709936.2 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

4e-134

142) MU9_135
( YP_007503554.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

7e-134

143) ybl123
( YP_003000524.1 )

ybl123

NC_012892
(Escherichia coli BL21(DE3))

6e-133

144) intB
( YP_410419.1 )

prophage P4 integrase

NC_007613
(Shigella boydii Sb227)

6e-133

145) CFSAN002050_22445
( YP_008262355.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

5e-132

146) intB
( YP_002153152.1 )

prophage integrase

NC_010554
(Proteus mirabilis HI4320)

7e-132

147) SARI_03312
( YP_001572286.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-131

148) Ent638_2887
( YP_001177603.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

3e-130

149) MU9_117
( YP_007503536.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

3e-130

150) intB
( YP_005802313.1 )

protein intB

NC_017390
(Erwinia pyrifoliae DSM 12163)

1e-128

151) EpC_14570
( YP_002648472.1 )

phage integrase family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

1e-128

152) Rahaq_1192
( YP_004211942.1 )

integrase family protein

NC_015061
(Rahnella sp. Y9602)

1e-125

153) plu4477
( NP_931643.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

5e-123

154) Dd586_0881
( YP_003332472.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

4e-122

155) Dda3937_03406
( YP_003881783.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

9e-122

156) PC1_0871
( YP_003016457.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

4e-121

157) PAU_03981
( YP_003042810.1 )

p4 integrase-like protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-120

158) Pecwa_0718
( YP_003258145.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

6e-120

159) ECOK1_4788
( YP_006103840.1 )

site-specific recombinase, phage integrase family

NC_017628
(Escherichia coli IHE3034)

1e-119

160) Dd703_3541
( YP_002989121.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

2e-118

161) Dd1591_3702
( YP_003005986.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

3e-118

162) SNSL254_A4836
( YP_002043726.1 )

integrase

NC_011080
(Salmonella enterica SL254)

3e-118

163) intB
( YP_003713602.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-118

164) intB
( YP_003469249.1 )

KpLE2 phage-like element; P4-like integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-117

165) KPHS_05400
( YP_005224840.1 )

putative P4-type integrase

NC_016845
(Klebsiella pneumoniae HS11286)

1e-117

166) N559_4601
( YP_008427480.1 )

P4-type integrase

NC_022082
(Klebsiella pneumoniae JM45)

1e-117

167) SEEB0189_19950
( YP_008310270.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

1e-117

168) SN31241_8570
( YP_008358775.1 )

Integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

8e-118

169) SSPA3984
( YP_002144818.1 )

integrase

NC_011147
(Salmonella enterica AKU12601)

8e-118

170) int
( YP_153333.1 )

integrase

NC_006511
(Salmonella enterica ATCC 9150)

8e-118

171) intA_4
( YP_008574436.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

3e-117

172) ECO26_5435
( YP_003232308.1 )

integrase

NC_013361
(Escherichia coli 11368)

4e-117

173) ENC_43890
( YP_007847599.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

1e-116

174) STBHUCCB_9400
( YP_005216516.1 )

CP4-like integrase

NC_016832
(Salmonella enterica P-stx-12)

2e-116

175) t05065
( YP_006892430.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

2e-116

176) TY21A_04490
( YP_007925220.1 )

Prophage integrase

NC_021176
(Salmonella enterica Ty21a)

2e-116

177) intB
( YP_003468561.1 )

prophage like-integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

2e-116

178) ECABU_c49370
( YP_006108845.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

3e-116

179) int
( YP_002398227.1 )

Prophage integrase

NC_011745
(Escherichia coli ED1a)

3e-116

180) W5S_1599
( YP_006282563.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

3e-116

181) STY4821
( NP_458899.1 )

integrase

NC_003198
(Salmonella enterica CT18)

5e-116

182) t4518
( NP_808103.1 )

integrase

NC_004631
(Salmonella enterica Ty2)

5e-116

183) TY21A_22985
( YP_007928753.1 )

integrase

NC_021176
(Salmonella enterica Ty21a)

5e-116

184) c5371
( NP_757219.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

6e-116

185) i14_4891
( YP_006156950.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

6e-116

186) i02_4891
( YP_006152031.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

6e-116

187) W5S_0472
( YP_006281470.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

1e-115

188) A79E_1796
( YP_006635603.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

1e-115

189) Pecwa_1586
( YP_003258984.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

1e-115

190) Y11_15011
( YP_006005000.1 )

integrase

NC_017564
(Yersinia enterocolitica Y11)

1e-115

191) A464_4477
( YP_008325069.1 )

Integrase

NC_021870
(Salmonella bongori N268-08)

2e-115

192) Pecwa_0447
( YP_003257894.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-115

193) Dd703_2459
( YP_002988063.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

2e-115

194) ETAE_3092
( YP_003297134.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

2e-115

195) Dd586_2635
( YP_003334184.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

2e-115

196) intB
( YP_049780.1 )

phage integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

3e-115

197) intB
( YP_003712791.1 )

KpLE2 phage-like element; P4-like integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-115

198) intB
( YP_050980.1 )

integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

6e-115

199) Pecwa_1766
( YP_003259159.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

6e-115

200) W5S_0459
( YP_006281457.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

2e-114

201) intB
( YP_003714347.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-113

202) Dd703_3034
( YP_002988630.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

9e-114

203) ECO111_2624
( YP_003235033.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

2e-113

204) SeAg_B2068
( YP_002146918.1 )

integrase

NC_011149
(Salmonella enterica SL483)

2e-113

205) E2348C_2119
( YP_002329631.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

3e-113

206) SG1638
( YP_455318.1 )

phage integrase

NC_007712
(Sodalis glossinidius morsitans)

3e-113

207) Dd586_1478
( YP_003333051.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

5e-113

208) CFSAN002050_16945
( YP_008261284.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

7e-113

209) SPAB_01138
( YP_001587388.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-112

210) SG1996
( YP_002226930.1 )

phage integrase

NC_011274
(Salmonella enterica 287/91)

3e-112

211) SPUCDC_0925
( YP_008480613.1 )

phage integrase

NC_022221
(Salmonella enterica CDC1983-67)

6e-112

212) SEN1970
( YP_002244067.1 )

phage integrase

NC_011294
(Salmonella enterica P125109)

6e-112

213) SPUL_0925
( YP_005212155.1 )

phage integrase

NC_016831
(Salmonella enterica RKS5078)

6e-112

214) I137_04205
( YP_008380372.1 )

integrase

NC_021984
(Salmonella enterica S06004)

6e-112

215) SeD_A2305
( YP_002216062.1 )

integrase

NC_011205
(Salmonella enterica CT_02021853)

1e-111

216) KPK_1811
( YP_002237656.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

1e-111

217) A79E_4509
( YP_006638268.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

2e-111

218) int
( YP_002917504.1 )

integrase

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

2e-111

219) int
( YP_002398182.1 )

integrase

NC_011745
(Escherichia coli ED1a)

2e-111

220) Dda3937_00080
( YP_003883684.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

2e-111

221) Pecwa_3419
( YP_003260764.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-111

222) PC1_0858
( YP_003016445.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

3e-111

223) M621_16100
( YP_008160007.1 )

integrase

NC_021659
(Serratia plymuthica S13)

3e-111

224) A79E_1748
( YP_006635556.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

1e-110

225) CKO_00953
( YP_001452539.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

1e-110

226) ST548_p7750
( YP_007386848.1 )

Integrase

NC_020181
(Enterobacter aerogenes EA1509E)

1e-110

227) A79E_1743
( YP_006635553.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

1e-110

228) KPR_3398
( YP_007992374.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

1e-110

229) Dd1591_1514
( YP_003003849.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

2e-110

230) SBO_4174
( YP_410429.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

2e-110

231) EbC_39600
( YP_003743338.1 )

integrase

NC_014306
(Erwinia billingiae Eb661)

3e-110

232) plu4460
( NP_931626.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

5e-110

233) KOX_24355
( YP_005020825.1 )

integrase family protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

6e-110

234) int
( NP_458759.1 )

bacteriophage integrase

NC_003198
(Salmonella enterica CT18)

1e-109

235) STBHUCCB_46270
( YP_005220043.1 )

Bacteriophage integrase

NC_016832
(Salmonella enterica P-stx-12)

1e-109

236) int
( NP_807963.1 )

bacteriophage integrase

NC_004631
(Salmonella enterica Ty2)

1e-109

237) W5S_1636
( YP_006282600.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

1e-109

238) Pecwa_1693
( YP_003259087.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

1e-109

239) int
( YP_002920242.1 )

integrase

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

2e-109

240) int
( YP_002381990.1 )

phage integrase

NC_011740
(Escherichia fergusonii ATCC 35469)

2e-109

241) TY21A_22260
( YP_007928610.1 )

bacteriophage integrase

NC_021176
(Salmonella enterica Ty21a)

2e-109

242) LHK_01737
( YP_002795731.1 )

CP4 integrase protein

NC_012559
(Laribacter hongkongensis HLHK9)

3e-109

243) int
( YP_002412985.1 )

integrase

NC_011751
(Escherichia coli UMN026)

1e-108

244) KPHS_34600
( YP_005227760.1 )

integrase

NC_016845
(Klebsiella pneumoniae HS11286)

1e-108

245) SeAg_B4773
( YP_002149406.2 )

integrase

NC_011149
(Salmonella enterica SL483)

1e-108

246) SBO_1221
( YP_407678.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

1e-108

247) SbBS512_E0979
( YP_001879655.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

2e-108

248) CKO_00917
( YP_001452503.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

3e-108

249) ST548_p7779
( YP_007386819.1 )

Integrase

NC_020181
(Enterobacter aerogenes EA1509E)

3e-108

250) A79E_1712
( YP_006635522.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

3e-108

251) Rahaq2_2006
( YP_005200009.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

4e-108

252) PPS_0628
( YP_004700093.1 )

phage integrase family protein

NC_015733
(Pseudomonas putida S16)

1e-107

253) ROD_20671
( YP_003365620.1 )

integrase

NC_013716
(Citrobacter rodentium ICC168)

1e-107

254) int2
( NP_993013.1 )

integrase

NC_005810
(Yersinia pestis 91001)

7e-108

255) YPA_1295
( YP_651207.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

7e-108

256) int
( YP_002346908.1 )

integrase

NC_003143
(Yersinia pestis CO92)

7e-108

257) int
( YP_005504895.1 )

integrase

NC_017154
(Yersinia pestis D106004)

7e-108

258) int
( YP_005508939.1 )

integrase

NC_017160
(Yersinia pestis D182038)

7e-108

259) y2393
( NP_669700.1 )

prophage integrase

NC_004088
(Yersinia pestis KIM)

7e-108

260) YPDSF_1208
( YP_001162577.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

7e-108

261) Dd1591_3717
( YP_003005999.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

9e-108

262) KPK_1842
( YP_002237686.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

1e-107

263) YpAngola_A2104
( YP_001606561.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

3e-107

264) Dd703_3412
( YP_002988996.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

4e-107

265) W5S_1679
( YP_006282643.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

6e-107

266) Dd1591_3537
( YP_003005827.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

7e-107

267) int
( YP_004730693.1 )

bacteriophage integrase

NC_015761
(Salmonella bongori NCTC 12419)

7e-107

268) O3M_09700
( YP_006769591.1 )

integrase

NC_018650
(Escherichia coli 2009EL-2050)

8e-107

269) O3O_15890
( YP_006783716.1 )

integrase

NC_018661
(Escherichia coli 2009EL-2071)

8e-107

270) O3K_09735
( YP_006778644.1 )

integrase

NC_018658
(Escherichia coli 2011C-3493)

8e-107

271) int
( YP_002403247.1 )

integrase

NC_011748
(Escherichia coli 55989)

8e-107

272) ECNA114_2039
( YP_006139140.1 )

prophage P4 integrase

NC_017644
(Escherichia coli NA114)

9e-107

273) PC1_0501
( YP_003016092.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

9e-107

274) ETA_03770
( YP_001906331.1 )

P4-type integrase

NC_010694
(Erwinia tasmaniensis Et1/99)

1e-106

275) CE10_2255
( YP_006144319.1 )

integrase

NC_017646
(Escherichia coli CE10)

2e-106

276) int
( YP_002407094.1 )

integrase

NC_011750
(Escherichia coli IAI39)

2e-106

277) NRG857_09860
( YP_006120327.1 )

integrase

NC_017634
(Escherichia coli NRG 857C)

2e-106

278) Dda3937_01301
( YP_003881181.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

3e-106

279) KPN2242_15195
( YP_005955494.1 )

integrase

NC_017540
(Klebsiella pneumoniae KCTC 2242)

3e-106

280) Dd703_3554
( YP_002989134.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

4e-106

281) Entas_3110
( YP_004829618.1 )

integrase family protein

NC_015968
(Enterobacter asburiae LF7a)

5e-106

282) Dda3937_02713
( YP_003881328.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

2e-105

283) ECP_1962
( YP_669862.1 )

bacteriophage integrase

NC_008253
(Escherichia coli 536)

3e-105

284) ECABU_c22620
( YP_006106313.1 )

P4-like integrase

NC_017631
(Escherichia coli ABU 83972)

3e-105

285) c2449
( NP_754341.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

3e-105

286) i14_2259
( YP_006154368.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

3e-105

287) i02_2259
( YP_006149449.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

3e-105

288) ECOK1_2168
( YP_006101333.1 )

integrase/recombinase, phage integrase family

NC_017628
(Escherichia coli IHE3034)

3e-105

289) intA_3
( YP_008571925.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

3e-105

290) UM146_07190
( YP_006110343.1 )

bacteriophage integrase

NC_017632
(Escherichia coli UM146)

3e-105

291) UTI89_C2204
( YP_541203.1 )

prophage P4 integrase

NC_007946
(Escherichia coli UTI89)

3e-105

292) Pecwa_1727
( YP_003259121.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-105

293) Rahaq2_2650
( YP_005200640.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

3e-104

294) intB
( YP_008115659.1 )

putative prophage P4 integrase

NC_021505
(Pseudomonas putida NBRC 14164)

1e-103

295) Rahaq2_1748
( YP_005199761.1 )

Integrase

NC_016818
(Rahnella aquatilis CIP 78.65)

8e-104

296) PputW619_4935
( YP_001751780.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

1e-102

297) intB
( YP_008111337.1 )

putative prophage P4 integrase

NC_021505
(Pseudomonas putida NBRC 14164)

2e-102

298) Pfl01_3064
( YP_348793.1 )

Phage integrase

NC_007492
(Pseudomonas fluorescens Pf0-1)

3e-102

299) KPK_1799
( YP_002237646.1 )

integrase

NC_011283
(Klebsiella pneumoniae 342)

1e-101

300) L483_01150
( YP_008092085.1 )

integrase

NC_021491
(Pseudomonas putida H8234)

2e-101

301) PCC21_004050
( YP_006645061.1 )

integrase

NC_018525
(Pectobacterium carotovorum PCC21)

8e-97

302) int
( YP_001338304.1 )

putative phage integrase

NC_009648
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

5e-96

303) SBOV45841
( YP_008508356.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

2e-95

304) UMNK88_5213
( YP_006136842.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

1e-93

305) Q7S_09690
( YP_005401739.1 )

integrase family protein

NC_017047
(Rahnella aquatilis HX2)

2e-93

306) BJAB0715_03144
( YP_008218292.1 )

Integrase

NC_021733
(Acinetobacter baumannii BJAB0715)

3e-89

307) PSF113_0326
( YP_005205757.1 )

integrase

NC_016830
(Pseudomonas fluorescens F113)

2e-86

308) EC042_2207
( YP_006096513.1 )

integrase

NC_017626
(Escherichia coli 042)

4e-85

309) ETEC_2075
( YP_006115641.1 )

integrase

NC_017633
(Escherichia coli ETEC H10407)

5e-85

310) O3M_00580
( YP_006767801.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

2e-84

311) O3O_25120
( YP_006781906.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

2e-84

312) O3K_00550
( YP_006776846.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

2e-84

313) ybl160
( YP_003001213.1 )

ybl160

NC_012892
(Escherichia coli BL21(DE3))

2e-84

314) ECD_03516
( YP_003056085.1 )

hypothetical protein

NC_012971
(Escherichia coli BL21(DE3))

2e-84

315) intC
( NP_756353.1 )

prophage integrase

NC_004431
(Escherichia coli CFT073)

2e-84

316) ECBD_0066
( YP_003034330.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

2e-84

317) ECB_03516
( YP_003046695.1 )

Int

NC_012967
(Escherichia coli REL606)

2e-84

318) CE10_4227
( YP_006146216.1 )

putative prophage integrase

NC_017646
(Escherichia coli CE10)

3e-84

319) ECIAI39_4188
( YP_002410064.1 )

putative prophage integrase

NC_011750
(Escherichia coli IAI39)

3e-84

320) ECSF_1824
( YP_003349814.1 )

phage integrase

NC_013654
(Escherichia coli SE15)

3e-84

321) ECABU_c41260
( YP_006108090.1 )

putative phage integrase

NC_017631
(Escherichia coli ABU 83972)

3e-84

322) intC
( YP_006156223.1 )

putative prophage integrase

NC_017652
(Escherichia coli clone D i14)

3e-84

323) intC
( YP_006151304.1 )

putative prophage integrase

NC_017651
(Escherichia coli clone D i2)

3e-84

324) SSON_3744
( YP_312525.1 )

integrase

NC_007384
(Shigella sonnei Ss046)

4e-84

325) intC
( YP_691185.1 )

integrase

NC_008258
(Shigella flexneri 8401)

8e-84

326) ECABU_c22350
( YP_006106291.1 )

site-specific recombinase

NC_017631
(Escherichia coli ABU 83972)

1e-83

327) LF82_294
( YP_002556846.1 )

Prophage P4 integrase

NC_011993
(Escherichia coli LF82)

1e-83

328) ETEC_3899
( YP_006117440.1 )

integrase

NC_017633
(Escherichia coli ETEC H10407)

1e-83

329) intL
( NP_290239.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_002655
(Escherichia coli EDL933)

3e-83

330) ECO55CA74_21080
( YP_006161321.1 )

putative integrase for prophage 933L and the LEE pathogenicity island

NC_017656
(Escherichia coli RM12579)

3e-83

331) ECs4534
( NP_312561.1 )

integrase

NC_002695
(Escherichia coli Sakai)

3e-83

332) intL
( YP_003080451.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_013008
(Escherichia coli TW14359)

3e-83

333) CDCO157_4272
( YP_006315138.1 )

putative integrase

NC_017906
(Escherichia coli Xuzhou21)

3e-83

334) ECP_3765
( YP_671637.1 )

phage integrase

NC_008253
(Escherichia coli 536)

4e-83

335) ECP_1936
( YP_669837.1 )

P4-like integrase

NC_008253
(Escherichia coli 536)

7e-83

336) c2418
( NP_754310.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

7e-83

337) i14_2235
( YP_006154344.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

7e-83

338) i02_2235
( YP_006149425.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

7e-83

339) intL
( YP_003501848.1 )

CP4-like integrase

NC_013941
(Escherichia coli CB9615)

2e-82

340) ECH74115_5032
( YP_002273139.1 )

integrase

NC_011353
(Escherichia coli EC4115)

2e-82

341) SFxv_4026
( YP_005729297.1 )

Sai integrase

NC_017328
(Shigella flexneri 2002017)

3e-82

342) S4835
( NP_839238.1 )

integrase

NC_004741
(Shigella flexneri 2457T)

3e-82

343) SF3698
( NP_709437.1 )

integrase

NC_004337
(Shigella flexneri 301)

3e-82

344) Q7A_2891
( YP_006297314.1 )

integrase

NC_017857
(Methylophaga sp. JAM1)

5e-80

345) intB
( NP_900321.1 )

prophage CP4-like integrase

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-78

346) ETAF_0751
( YP_005698365.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

2e-78

347) M621_05660
( YP_008157963.1 )

integrase

NC_021659
(Serratia plymuthica S13)

3e-78

348) YPK_3149
( YP_001721873.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

4e-78

349) Dd586_2842
( YP_003334387.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

1e-77

350) EcHS_A0329
( YP_001457101.1 )

site-specific recombinase, phage integrase

NC_009800
(Escherichia coli HS)

1e-77

351) SMWW4_v1c00920
( YP_007403919.1 )

phage integrase

NC_020211
(Serratia marcescens WW4)

1e-77

352) APECO1_1051
( YP_853069.1 )

phage integrase

NC_008563
(Escherichia coli APEC O1)

2e-77

353) intA_2
( YP_008571903.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

2e-77

354) UM146_07320
( YP_006110367.1 )

putative phage integrase

NC_017632
(Escherichia coli UM146)

2e-77

355) UTI89_C2177
( YP_541179.1 )

integrase

NC_007946
(Escherichia coli UTI89)

2e-77

356) GM21_1254
( YP_003021073.1 )

integrase family protein

NC_012918
(Geobacter sp. M21)

2e-77

357) int
( YP_008137204.1 )

integrase Int

NC_021591
(Serratia odorifera 4Rx13)

4e-77

358) AHML_14825
( YP_008044080.1 )

phage integrase

NC_021290
(Aeromonas hydrophila ML09-119)

1e-76

359) ETAC_13020
( YP_007630085.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

1e-76

360) Dda3937_00938
( YP_003884289.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

9e-77

361) ECNA114_2439
( YP_006139547.1 )

putative phage integrase

NC_017644
(Escherichia coli NA114)

2e-76

362) ECSF_2224
( YP_003350214.1 )

putative phage integrase

NC_013654
(Escherichia coli SE15)

2e-76

363) A3UG_04555
( YP_006476358.1 )

prophage CPS-53 integrase

NC_018079
(Enterobacter cloacae SDM)

3e-76

364) PAU_01003
( YP_003039840.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-76

365) ECSE_0264
( YP_002291539.1 )

putative phage integrase

NC_011415
(Escherichia coli SE11)

4e-76

366) GBP346_A1152
( YP_002895874.1 )

site-specific recombinase, phage integrase family

NC_012695
(Burkholderia pseudomallei MSHR346)

5e-76

367) intB
( YP_007493033.1 )

putative prophage P4 integrase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

7e-76

368) intB
( YP_001143574.1 )

phage integrase

NC_009348
(Aeromonas salmonicida A449)

1e-75

369) SSON53_21650
( YP_005458822.1 )

hypothetical protein

NC_016822
(Shigella sonnei 53G)

1e-75

370) O3K_20180
( YP_006780702.1 )

prophage CPS-53 integrase

NC_018658
(Escherichia coli 2011C-3493)

1e-75

371) EC55989_0268
( YP_002401394.1 )

prophage CPS-53 integrase

NC_011748
(Escherichia coli 55989)

1e-75

372) ETAC_11945
( YP_007629870.1 )

putative phage integrase

NC_020796
(Edwardsiella tarda C07-087)

9e-76

373) SEEB0189_04710
( YP_008307295.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

3e-75

374) SEEH1578_21245
( YP_008248300.1 )

integrase

NC_021810
(Salmonella enterica 41578)

4e-75

375) EcSMS35_0299
( YP_001742404.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

4e-75

376) CFSAN002069_19870
( YP_008252715.1 )

integrase

NC_021812
(Salmonella enterica CFSAN002069)

5e-75

377) SeHA_C2638
( YP_002046450.1 )

integrase

NC_011083
(Salmonella enterica SL476)

5e-75

378) int
( YP_003713510.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

6e-75

379) SeSA_A0666
( YP_002113632.1 )

integrase

NC_011094
(Salmonella enterica CVM19633)

6e-75

380) int4
( NP_994857.1 )

integrase

NC_005810
(Yersinia pestis 91001)

1e-74

381) A1122_00590
( YP_005519823.1 )

integrase

NC_017168
(Yersinia pestis A1122)

1e-74

382) YpAngola_A3853
( YP_001608158.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

1e-74

383) int
( YP_002345935.1 )

integrase

NC_003143
(Yersinia pestis CO92)

1e-74

384) int
( YP_005504005.1 )

integrase

NC_017154
(Yersinia pestis D106004)

1e-74

385) int
( YP_005507871.1 )

integrase

NC_017160
(Yersinia pestis D182038)

1e-74

386) YPC_0922
( YP_005622895.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

1e-74

387) y3271
( NP_670570.1 )

integrase

NC_004088
(Yersinia pestis KIM)

1e-74

388) YPN_3086
( YP_649013.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

1e-74

389) int
( YP_003567008.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

1e-74

390) SMWW4_v1c08950
( YP_007404718.1 )

putative site specific integrase

NC_020211
(Serratia marcescens WW4)

8e-75

391) Gbem_3253
( YP_002140046.1 )

bacteriophage P4-type integrase

NC_011146
(Geobacter bemidjiensis Bem)

2e-74

392) YPDSF_0629
( YP_001162011.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-74

393) YpsIP31758_0884
( YP_001399868.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

3e-74

394) int
( YP_071664.1 )

phage integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

3e-74

395) YPTS_3293
( YP_001873705.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

3e-74

396) YPK_0925
( YP_001719679.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-74

397) ETEC_0316
( YP_006113905.1 )

prophage integrase

NC_017633
(Escherichia coli ETEC H10407)

3e-74

398) ECABU_c03450
( YP_006104480.1 )

DNA integration/recombination/invertion protein

NC_017631
(Escherichia coli ABU 83972)

4e-74

399) NAL212_1009
( YP_004294089.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

6e-74

400) PC1_2870
( YP_003018435.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

1e-73

401) W5S_3565
( YP_006284507.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

8e-74

402) amb0488
( YP_419851.1 )

integrase

NC_007626
(Magnetospirillum magneticum AMB-1)

9e-74

403) YE105_C3845
( YP_004300042.1 )

putative phage integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

1e-73

404) Pecwa_1403
( YP_003258809.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-73

405) Pcar_1823
( YP_006717564.1 )

integrase, bacteriophage P4-type

NC_007498
(Pelobacter carbinolicus DSM 2380)

2e-73

406) xerC4
( NP_994679.1 )

phage integrase

NC_005810
(Yersinia pestis 91001)

2e-73

407) A1122_05665
( YP_005520819.1 )

putative phage integrase

NC_017168
(Yersinia pestis A1122)

2e-73

408) YpAngola_A4153
( YP_001608430.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

2e-73

409) YPA_4123
( YP_654029.1 )

putative phage integrase

NC_008150
(Yersinia pestis Antiqua)

2e-73

410) YPO4033
( YP_002348896.1 )

phage integrase

NC_003143
(Yersinia pestis CO92)

2e-73

411) YPD4_3547
( YP_005506754.1 )

putative phage integrase

NC_017154
(Yersinia pestis D106004)

2e-73

412) YPD8_3553
( YP_005510614.1 )

putative phage integrase

NC_017160
(Yersinia pestis D182038)

2e-73

413) YPC_4545
( YP_005626217.1 )

putative phage integrase

NC_017265
(Yersinia pestis Harbin 35)

2e-73

414) y4052
( NP_671345.1 )

integrase

NC_004088
(Yersinia pestis KIM)

2e-73

415) YPN_3680
( YP_649607.1 )

phage integrase

NC_008149
(Yersinia pestis Nepal516)

2e-73

416) YPDSF_3775
( YP_001165093.1 )

phage integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-73

417) YE105_C2844
( YP_004299043.1 )

Integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-73

418) Pecwa_1377
( YP_003258785.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

6e-73

419) YPTB3886
( YP_072362.1 )

integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

1e-72

420) YPTS_4103
( YP_001874506.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-72

421) Gbem_2993
( YP_002139792.1 )

bacteriophage P4-type integrase

NC_011146
(Geobacter bemidjiensis Bem)

5e-72

422) int
( YP_002399202.1 )

Integrase from prophage

NC_011745
(Escherichia coli ED1a)

6e-72

423) SN31241_7100
( YP_008358628.1 )

CP4-like integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-71

424) SeHA_C4738
( YP_002048369.1 )

integrase

NC_011083
(Salmonella enterica SL476)

2e-71

425) SMD_1781
( YP_006184502.1 )

integrase

NC_017671
(Stenotrophomonas maltophilia D457)

2e-71

426) Tbd_0943
( YP_314701.1 )

integrase prophage protein

NC_007404
(Thiobacillus denitrificans ATCC 25259)

2e-71

427) Selin_1494
( YP_004112783.1 )

integrase family protein

NC_014836
(Desulfurispirillum indicum S5)

3e-71

428) EcE24377A_3377
( YP_001464377.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

1e-70

429) MADE_1010570
( YP_004427250.1 )

integrase

NC_011138
(Alteromonas macleodii Deep ecotype)

1e-70

430) EcSMS35_3112
( YP_001745129.1 )

site-specific recombinase, phage integrase family protein

NC_010498
(Escherichia coli SMS-3-5)

9e-71

431) SeSA_A0374
( YP_002113350.1 )

site-specific recombinase, phage integrase family protein

NC_011094
(Salmonella enterica CVM19633)

1e-70

432) intB
( YP_001242175.1 )

P4-like integrase

NC_009485
(Bradyrhizobium sp. BTAi1)

3e-70

433) Dret_1610
( YP_003198472.1 )

integrase family protein

NC_013223
(Desulfohalobium retbaense DSM 5692)

3e-70

434) RSc0968
( NP_519089.1 )

cp4-like integrase

NC_003295
(Ralstonia solanacearum GMI1000)

6e-70

435) Rfer_1354
( YP_522619.1 )

phage integrase

NC_007908
(Rhodoferax ferrireducens T118)

2e-69

436) Ppro_2300
( YP_901965.1 )

phage integrase family protein

NC_008609
(Pelobacter propionicus DSM 2379)

2e-69

437) Fraau_1988
( YP_005378057.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

2e-69

438) AMBLS11_09695
( YP_006824971.1 )

prophage CP4-like integrase

NC_018692
(Alteromonas macleodii Black Sea 11)

7e-69

439) PSPTO_5344
( NP_795075.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

8e-69

440) YPK_0061
( YP_001718828.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

8e-69

441) Despr_0274
( YP_004193749.1 )

integrase family protein

NC_014972
(Desulfobulbus propionicus DSM 2032)

1e-68

442) SU5_02989
( YP_006088602.1 )

Phage integrase, Phage P4-associated

NC_017623
(Salmonella enterica B182)

2e-68

443) Dsui_1791
( YP_005028016.1 )

Integrase

NC_016616
(Dechlorosoma suillum PS)

4e-68

444) CSSP291_04405
( YP_007439767.1 )

putative integrase

NC_020260
(Cronobacter sakazakii Sp291)

4e-68

445) ECL_03688
( YP_003614171.1 )

putative integrase

NC_014121
(Enterobacter cloacae ATCC 13047)

4e-68

446) ELI_09990
( YP_458887.1 )

symbiosis island integrase

NC_007722
(Erythrobacter litoralis HTCC2594)

1e-67

447) EAE_06555
( YP_004591514.1 )

hypothetical protein

NC_015663
(Enterobacter aerogenes KCTC 2190)

1e-67

448) EAE_24695
( YP_004595111.1 )

putative integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

8e-68

449) GBP346_A3075
( YP_002897757.1 )

integrase

NC_012695
(Burkholderia pseudomallei MSHR346)

6e-67

450) P12B_c3788
( YP_006170775.1 )

Sai integrase-like protein

NC_017663
(Escherichia coli P12b)

6e-67

451) Xaut_3444
( YP_001418330.1 )

integrase family protein

NC_009720
(Xanthobacter autotrophicus Py2)

6e-67

452) Fraau_3064
( YP_005379074.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

7e-67

453) Galf_2041
( YP_003847811.1 )

integrase family protein

NC_014394
(Gallionella capsiferriformans ES-2)

1e-66

454) EKO11_0064
( YP_005275792.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

1e-66

455) KO11_04405
( YP_006163219.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

1e-66

456) LY180_18845
( YP_008566814.1 )

integrase

NC_022364
(Escherichia coli LY180)

1e-66

457) ECW_m3936
( YP_006126516.1 )

putative integrase

NC_017635
(Escherichia coli W)

1e-66

458) WFL_19235
( YP_006175275.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

1e-66

459) Lcho_2977
( YP_001792004.1 )

integrase family protein

NC_010524
(Leptothrix cholodnii SP-6)

1e-66

460) XALc_1804
( YP_003376288.1 )

phage-related integrase

NC_013722
(Xanthomonas albilineans GPE PC73)

8e-66

461) C380_06330
( YP_006853614.1 )

phage integrase

NC_018708
(Acidovorax sp. KKS102)

8e-66

462) plu0125
( NP_927495.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

8e-66

463) Mesau_02378
( YP_007304184.1 )

Integrase

NC_019973
(Mesorhizobium australicum WSM2073)

9e-66

464) Mesci_2349
( YP_004141546.1 )

integrase family protein

NC_014923
(Mesorhizobium ciceri WSM1271)

9e-66

465) Mesop_2493
( YP_004611061.1 )

integrase family protein

NC_015675
(Mesorhizobium opportunistum WSM2075)

9e-66

466) RSc1871
( NP_519992.1 )

integrase prophage protein

NC_003295
(Ralstonia solanacearum GMI1000)

9e-65

467) Nmul_A2184
( YP_412868.1 )

Phage integrase

NC_007614
(Nitrosospira multiformis ATCC 25196)

2e-64

468) RCFBP_11461
( YP_003745377.1 )

prophage integrase

NC_014307
(Ralstonia solanacearum CFBP2957)

2e-64

469) Mpe_A1087
( YP_001020283.1 )

prophage CP4-like integrase

NC_008825
(Methylibium petroleiphilum PM1)

4e-64

470) M301_2114
( YP_003675060.1 )

integrase family protein

NC_014207
(Methylotenera versatilis 301)

9e-64

471) Tbd_2005
( YP_315763.1 )

cp4-like integrase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

2e-63

472) RD1_2228
( YP_682505.1 )

CP4-like integrase

NC_008209
(Roseobacter denitrificans OCh 114)

2e-63

473) Neut_2505
( YP_748674.1 )

phage integrase family protein

NC_008344
(Nitrosomonas eutropha C91)

2e-63

474) AvCA_40500
( YP_007894968.1 )

Phage integrase

NC_021149
(Azotobacter vinelandii CA)

3e-63

475) AvCA6_40500
( YP_007900017.1 )

Phage integrase

NC_021150
(Azotobacter vinelandii CA6)

3e-63

476) Avin_40500
( YP_002801161.1 )

phage integrase

NC_012560
(Azotobacter vinelandii DJ)

3e-63

477) Nit79A3_1833
( YP_004695037.1 )

integrase

NC_015731
(Nitrosomonas sp. Is79A3)

3e-63

478) Varpa_2722
( YP_004155031.1 )

integrase family protein

NC_014931
(Variovorax paradoxus EPS)

4e-63

479) DVU1527
( YP_010746.1 )

phage integrase site specific recombinase

NC_002937
(Desulfovibrio vulgaris Hildenborough)

8e-63

480) Deval_1767
( YP_005702556.1 )

integrase family protein

NC_017310
(Desulfovibrio vulgaris RCH1)

8e-63

481) XCV2217
( YP_363948.1 )

phage-related integrase

NC_007508
(Xanthomonas campestris 85-10)

1e-62

482) PAU_01009
( YP_003039846.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-62

483) NCGM2_0360
( YP_005978635.1 )

site-specific recombinase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

3e-62

484) NAL212_2545
( YP_004295511.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

2e-61

485) Fraau_2605
( YP_005378631.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

8e-60

486) SLG_25940
( YP_004835726.1 )

putative integrase

NC_015976
(Sphingobium sp. SYK-6)

1e-59

487) XALc_1632
( YP_003376121.1 )

phage-related integrase

NC_013722
(Xanthomonas albilineans GPE PC73)

3e-59

488) int
( YP_007495002.1 )

Integrase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

8e-59

489) XBJ1_1315
( YP_003467235.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment)

NC_013892
(Xenorhabdus bovienii SS-2004)

6e-57

490) LFML04_0012
( YP_006765226.1 )

phage integrase family protein

NC_018649
(Leptospirillum ferriphilum ML-04)

2e-56

491) MCA0676
( YP_113189.1 )

phage integrase site specific recombinase

NC_002977
(Methylococcus capsulatus Bath)

1e-46

492) A1S_2908
( YP_001085916.1 )

integrase

NC_009085
(Acinetobacter baumannii ATCC 17978)

3e-46

• Sequence Alignments

1) ECO103_3550 in NC_013353


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  690 bits (2609),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

2) ECO103_4929 in NC_013353


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  690 bits (2609),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

3) ECO111_5079 in NC_013364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  690 bits (2609),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

4) E2348C_3220 in NC_011601


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  690 bits (2609),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

5) ECO26_5300 in NC_013361


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  690 bits (2609),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/421 (100%), Positives = 421/421 (100%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

6) ECH74115_4272 in NC_011353


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

7) Z4313 in NC_002655


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

8) ECs3843 in NC_002695


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

9) ECSP_3940 in NC_013008


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

10) intB in NC_013941


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

11) ECO55CA74_17295 in NC_017656


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

12) CDCO157_3594 in NC_017906


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  688 bits (2601),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLAL VYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

13) int in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  682 bits (2579),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/420 (99%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSN  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS+
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRDKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR++ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

14) EC042_3174 in NC_017626


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  682 bits (2578),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 412/421 (98%), Positives = 419/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTRDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT+DVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

15) c5216 in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2574),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/420 (99%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

16) EC042_4610 in NC_017626


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

17) ECP_2962 in NC_008253


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2575),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSRMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGS+MRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

18) int in NC_011748


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

19) EcE24377A_3314 in NC_009801


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2575),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLIHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLL+HPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

20) O3M_04655 in NC_018650


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

21) O3O_21040 in NC_018661


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

22) O3K_04610 in NC_018658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

23) UMNK88_3667 in NC_017641


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

24) EcolC_3878 in NC_010468


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  680 bits (2570),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 413/420 (99%), Positives = 416/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLRTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVTLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAV LNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRGMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALR MGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

25) APECO1_3534 in NC_008563


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  679 bits (2569),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/420 (98%), Positives = 417/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

26) CE10_4872 in NC_017646


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  679 bits (2569),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/420 (98%), Positives = 417/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

27) int in NC_011742


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  679 bits (2569),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/420 (98%), Positives = 417/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

28) ROD_50201 in NC_013716


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTIKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTT+KRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLNANREKCISPFDYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL+ANRE+ ISPF+YAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

29) int in NC_011750


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 417/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWRADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQW+ADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

30) int in NC_011750


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  676 bits (2556),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/421 (98%), Positives = 417/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI+SYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPISKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVP+SKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

31) ECO111_3718 in NC_013364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  676 bits (2556),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/421 (98%), Positives = 418/421 (99%), Gaps = 2/421 (0%)

Query  1    MALTDAKIRAAKPSDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKP+DKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKR--ARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  118
            LSEARTKR  ARKLISEG+DPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  119  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  178
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  179  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  238
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  239  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  298
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  299  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  358
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  359  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  418
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  419  Q  419
            Q
Sbjct  421  Q  421

32) ECO26_4069 in NC_013361


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  676 bits (2557),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 409/421 (98%), Positives = 419/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANVNNPLR  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYA++NNPL+
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

33) c3556 in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  672 bits (2539),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 408/421 (97%), Positives = 415/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI SYKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAER PLPGVKFSHRGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

34) ECED1_3430 in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  670 bits (2532),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 416/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKHTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAK TDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

35) EcolC_0747 in NC_010468


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2530),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 416/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGLPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKG PVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

36) ECABU_c32560 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

37) int in NC_008563


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

38) i14_3273 in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

39) i02_3273 in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

40) int in NC_017644


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

41) CE10_3417 in NC_017646


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

42) ECS88_4720 in NC_011742


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  669 bits (2528),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/421 (97%), Positives = 416/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

43) ECUMN_3322 in NC_011751


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  665 bits (2514),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 406/421 (97%), Positives = 415/421 (99%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTL+TPDLLIPVRAAE KQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAELEPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW  300
            ELRYARWSEIDIDNAMWTIPAE EPLPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTT++VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  ISPFEYAK+NNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

44) int in NC_011748


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

45) O3M_22875 in NC_018650


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

46) O3K_22970 in NC_018658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

47) SFxv_3245 in NC_017328


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

48) S4822 in NC_004741


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

49) SF2964 in NC_004337


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/420 (98%), Positives = 418/420 (99%), Gaps = 0/420 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEG+DPCEQKR KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPAL+LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300
            ELRYARWSEIDIDN+MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD  360
            AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ+VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

50) ETEC_4481 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/396 (97%), Positives = 393/396 (99%), Gaps = 0/396 (0%)

Query  1    MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGIDPCEQK  60
            MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEG+DPCEQK
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   RVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  120
            R KKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALN  180
            LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  240
            LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  LPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENTVNK  300
            LPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTWAGENGLIFTGAHDPRKPISENTVNK
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  360
            ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDANREQCISPFEYAKINNPLRR  396
            EERRLMLQWWADFLDANRE+ ISPFEYAKINNPL++
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

51) ETEC_3157 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  634 bits (2396),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/395 (98%), Positives = 392/395 (99%), Gaps = 0/395 (0%)

Query  1    MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  60
            MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLSTPDL  120
            RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTL+TPDL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  180
            LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  240
            LSRLPELLSRI++YKGQPVT+LAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  LPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  300
            LPGVKFS RGSKMRTPHLVPLS+Q VAILAELQTWAGENGLIFTGAHDPRKPISENTVNK
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  360
            ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDANREQCISPFEYAKINNPLK  395
            EERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

52) S70_06120 in NC_017731


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  588 bits (2221),  Expect = 2e-169, Method: Compositional matrix adjust.
 Identities = 329/421 (79%), Positives = 396/421 (95%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHSNGSKYWRLRYRHLGKEKTLALGLYPDVS  60
            MALTDAKIRAAKP  K+YKLTDGAG+ LLVH+NGS+YWRLRYR LGKEKTLALG+YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARLKRDEARKLIADGIDPCEQKRVAKAASDANLSFETIARQWHASNKKWSESHSEKV  120
            LSEAR KRDEARKLI++G+DPCEQKR  K  +D +LSFE IAR+WHASNK+W++SHS+KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQSGI  180
            LKSLE+HVFP+IG RDITTL+TPDLLIP+RAAE+K+IYEIA+RLQQRI+AVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IGYNPAIDTAGAVTTVQRQHRPALNLDRLPELITRIDAYKGQPVTRLAVMLNLLVFIRSS  240
            I YNPA+D AGA+TTV+RQHRPAL+L RLPEL++RI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDFDKALWTIPAQRKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEIWAW  300
            ELRYARWSEID+D+A+WTIPA+R P+PGVKFSHRG+KMRTPHLVPLS Q ++IL E+ +W
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  TGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGLWSKD  360
            +GE+ LI+TGAH+P KP+SENTVNKALRVMGYDT  ++CGHGFR+MACS+L+ESGLWS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDANREQTISPFDFAKLNNPMN  420
            AVERQMSHQERN+VRAAYIHKAEH+++RRLM+QWWAD+LDANRE+ ISPF++AK+NNP++
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  H  421
            +
Sbjct  421  Q  421

53) S70_13465 in NC_017731


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  588 bits (2221),  Expect = 2e-169, Method: Compositional matrix adjust.
 Identities = 330/421 (79%), Positives = 395/421 (94%), Gaps = 0/421 (0%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHTNGSKYWRLRYRHLGKEKTLALGLYPDVS  60
            MALTDAKIRAAKP  K+YKLTDGAG+ LLVH NGS+YWRLRYR LGKEKTLALG+YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARLKRDEARKLIADGIDPCEQKRVAKAASDANLSFETIARQWHASNKKWSESHSEKV  120
            LSEAR KRDEARKLI++G+DPCEQKR  K  +D +LSFE IAR+WHASNK+W++SHS+KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQSGI  180
            LKSLE+HVFP+IG RDITTL+TPDLLIP+RAAE+K+IYEIA+RLQQRI+AVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IGYNPAIDTAGAVTTVQRQHRPALNLDRLPELIARIDAYKGQPVTRLAVMLNLLVFIRSS  240
            I YNPA+D AGA+TTV+RQHRPAL+L RLPEL++RI++YKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDFDKALWTIPAERKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEIWAW  300
            ELRYARWSEID+D+A+WTIPAER P+PGVKFSHRG+KMRTPHLVPLS Q ++IL E+ +W
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  TGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGLWSKD  360
            +GE+ LI+TGAH+P KP+SENTVNKALRVMGYDT  ++CGHGFR+MACS+L+ESGLWS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDANREQTISPFDFAKLNNPMN  420
            AVERQMSHQERN+VRAAYIHKAEH+++RRLM+QWWAD+LDANRE+ ISPF++AK+NNP++
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  H  421
            +
Sbjct  421  Q  421

54) EAE_09085 in NC_015663


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  551 bits (2079),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 321/417 (77%), Positives = 380/417 (92%), Gaps = 0/417 (0%)

Query  1    MALTDAKIRAAKPDEKPYKLADSGNMFLLVHPNGSRYWRLRYRFLGKEKTLALGVYPEVS  60
            MALTDAKIRAAKP +K+YKL+D++ MFLLVHPNGSRYWRLRYR+LGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEAREKRDTARKLIAEGTDPCEHKRIKKSVPETAQTFEGIARQWHKSNKKWSDSHSEKI  120
            LSEAR KRD ARKLI+EG DPCE+KR KK VP+   +FE IAR+WH SNK+W++SHS+K+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGSRDITTLRTPDLLVPVkaaeakeiyeiaaRLQQRITAIMRYAAQSGI  180
            LKSLETHVFPFIG+RDITTL TPDLL+PV+AAEAK+IYEIA+RLQQRI+A+MRYA QSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  ITYNPAVDMAGALTTVKRQHRPALALNRISELLERLDAYRGQPLTRLATKLTLLIFIRSS  240
            I YNPA+DMAGALTTVKRQHRPAL L+R++ELL R+++Y+GQP+T+LA  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFKKAMWTIPPERKPIEGVKYSHRGSKMRTEHLVPLSTQALDILQQIHTI  300
            ELR+ARWSEID+ +AMWTIP+ER P+ GVK+SHRGSKMRT HLVPLS Q + IL +++T 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGEYELIFTGDHNPWKPMSENTVNNALRLMGYDTKIDVCGHGFRAMACSSLIESGLWSRD  360
            +GE  LIFTG H+P+KP+SENTVN+ALR+MGYDT  DVCGHGFRAMACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDANEEKTVSPFDFAKLHS  417
            AVERQMSHQERNGVRAAYIHKAE L+ERRLMLQWWADFLDAN E+ +SPF++AK+++
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

55) YpsIP31758_0809 in NC_009708


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  549 bits (2072),  Expect = 1e-157, Method: Compositional matrix adjust.
 Identities = 313/414 (76%), Positives = 363/414 (88%), Gaps = 0/414 (0%)

Query  1    MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALS  60
            MALTD K+R+AK  DK+YKLTD+ GM LLVHPNGS+YWRLRYR LGKE+TLALGVYP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARAKRDAARKLIAEGSDPSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKV  120
            LSEAR+KRD ARKLI+EG DP E KRAKK +PD   +FE IARRWHA+NKQW++ HS KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQCGI  180
            LK+LE  +FP  G RDI++L TPDLLIP+R AE   + E+++RL QR +A+MRYAVQ GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS  240
            I YNPA DM GALTTVKR HRPAL+L+R+PELLSRI +YKGQP+T+LAVMLNL+VFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLS  300
            ELRYARWSEID + A+WTIPAEREP+PGVKFSHRGSKMRT HLVPLS+Q +A+L EL+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  GGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRD  360
            +GE+GLIF G HDPRKPISENT+NKALR+MGY+T  +VCGHGFRAMACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDTNREIAVSPFDFAK  414
            AVERQMSHQERNGVRAAYIHKAE L+ERRLMLQWWADFLD+NRE  +SPF++AK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

56) SbBS512_E4662 in NC_010658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  525 bits (1982),  Expect = 1e-150, Method: Compositional matrix adjust.
 Identities = 319/326 (98%), Positives = 323/326 (99%), Gaps = 0/326 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRATEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRA+EAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENVMNAS  326
            AGENGLIFTGAHDPRKPISEN +N +
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKA  326

57) SSON53_18230 in NC_016822


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  525 bits (1981),  Expect = 1e-150, Method: Compositional matrix adjust.
 Identities = 319/326 (98%), Positives = 323/326 (99%), Gaps = 0/326 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSNKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHS+KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENVMNAS  326
            AGENGLIFTGAHDPRKPISEN +N +
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKA  326

58) SBO_4322 in NC_007613


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  524 bits (1976),  Expect = 3e-150, Method: Compositional matrix adjust.
 Identities = 318/326 (98%), Positives = 322/326 (99%), Gaps = 0/326 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDG+GMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120
            LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQ VTQLAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW  300
            ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ VAIL+ELQTW
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  AGENGLIFTGAHDPRKPISENVMNAS  326
            AGENGLIFTGAHDPRKPISEN +N +
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKA  326

59) EcSMS35_4753 in NC_010498


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  520 bits (1962),  Expect = 5e-149, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 365/421 (87%), Gaps = 0/421 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+RAAKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L+LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+FISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

60) D782_3965 in NC_020063


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  520 bits (1961),  Expect = 6e-149, Method: Compositional matrix adjust.
 Identities = 281/416 (68%), Positives = 358/416 (87%), Gaps = 0/416 (0%)

Query  1    MALTDIKVRTAKPMDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFDGKQKMLALGVYPDVS  60
            MALTD K+R+AKP DK YKLTDG GM LLVHPNGS+YWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARTRREEARKLVANGIDPGDKKKNDKVEQEDARTFEQLAIEWHATNKKWSEEHSRRV  120
            L++ART+R+EARKL+++G+DP ++K+  KV  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNITELKTRDLLAPIKVVELSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+IT L+T DLL P++  E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIGSYTGRPLTRLAVELTLLVFIRSS  240
            + YNPA +M GA+++ +RQHRPAL+L R PELL RIGSY G+P+T+LAV L LLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILEQIKTF  300
            ELR+ARWSEID++ +MWTIPAERE++ GVK S+RGSKMRTPHLVPLS+Q + IL +++T 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQVEVCGHGFRTMACSSLIESGLWSRD  360
            +G++ LIF G H+PRKP+SENTVNK+LRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERLMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKLG  416
            AVER MSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ +SPF++AK+ 
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

61) APECO78_02320 in NC_020163


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  518 bits (1956),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 285/421 (68%), Positives = 364/421 (87%), Gaps = 0/421 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+RAAKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV  120
            L++AR +RDEAR+L+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A+ L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

62) CE10_5017 in NC_017646


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  518 bits (1956),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 285/421 (68%), Positives = 364/421 (87%), Gaps = 0/421 (0%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+RAAKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV  120
            L++AR +RDEAR+L+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A+ L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  Q  421
            Q
Sbjct  421  Q  421

63) CFSAN001992_11535 in NC_020307


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  516 bits (1946),  Expect = 9e-148, Method: Compositional matrix adjust.
 Identities = 285/415 (69%), Positives = 362/415 (88%), Gaps = 1/415 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARSRRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLYRIDHYSGRPLTRFAVELMLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T++AV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKIKS  300
            SELR+ARW+E+D++ AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
              G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREIGVSPFDFGK  415
            DAVERQMSHQER++VRAAYIHKAEHL ERRLMLQWWAD+LDANRE  +SPF+++K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

64) KO11_23100 in NC_017660


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  514 bits (1938),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 364/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHSAR  120
            L +AR +RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQ+ +A++R+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI  Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKIKS  300
            SELR+ARWSE+D+D AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENT+NKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKINSSF  420
            DAVERQMSHQER++VRAAYIHKAEHL ER LMLQWWAD+LDANR   I+PF+YAKIN+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  R  421
            +
Sbjct  420  K  420

65) EKO11_4021 in NC_016902


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  514 bits (1938),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 364/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHSAR  120
            L +AR +RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQ+ +A++R+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI  Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKIKS  300
            SELR+ARWSE+D+D AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENT+NKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKINSSF  420
            DAVERQMSHQER++VRAAYIHKAEHL ER LMLQWWAD+LDANR   I+PF+YAKIN+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  R  421
            +
Sbjct  420  K  420

66) LY180_22530 in NC_022364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  514 bits (1938),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 364/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHSAR  120
            L +AR +RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQ+ +A++R+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI  Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKIKS  300
            SELR+ARWSE+D+D AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENT+NKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKINSSF  420
            DAVERQMSHQER++VRAAYIHKAEHL ER LMLQWWAD+LDANR   I+PF+YAKIN+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  R  421
            +
Sbjct  420  K  420

67) ECW_m4652 in NC_017635


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  514 bits (1938),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 364/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHSAR  120
            L +AR +RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQ+ +A++R+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI  Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKIKS  300
            SELR+ARWSE+D+D AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENT+NKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKINSSF  420
            DAVERQMSHQER++VRAAYIHKAEHL ER LMLQWWAD+LDANR   I+PF+YAKIN+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  R  421
            +
Sbjct  420  K  420

68) WFL_22655 in NC_017664


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  514 bits (1938),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 286/421 (68%), Positives = 364/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEVITFEVVAREWHASNQKWSASHSAR  120
            L +AR +RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQ+ +A++R+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI  Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKIKS  300
            SELR+ARWSE+D+D AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENT+NKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDANRMAAITPFDYAKINSSF  420
            DAVERQMSHQER++VRAAYIHKAEHL ER LMLQWWAD+LDANR   I+PF+YAKIN+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  R  421
            +
Sbjct  420  K  420

69) i14_4873a in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  512 bits (1930),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 281/421 (67%), Positives = 363/421 (87%), Gaps = 0/421 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHSTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANVNNPLR  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYA++NNPL+
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

70) i02_4873a in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  512 bits (1930),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 281/421 (67%), Positives = 363/421 (87%), Gaps = 0/421 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHSTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYANVNNPLR  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYA++NNPL+
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

Query  421  R  421
            +
Sbjct  421  Q  421

71) ECP_4521 in NC_008253


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  510 bits (1924),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 282/420 (68%), Positives = 362/420 (87%), Gaps = 0/420 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKP+DK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  W ++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS+Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGAHDLIFIGNHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPFEYAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

72) ECABU_c48360 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  510 bits (1923),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 281/420 (67%), Positives = 362/420 (87%), Gaps = 0/420 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKP+DK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  W ++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS+Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPF+YAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

73) UM146_21610 in NC_017632


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  510 bits (1923),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 281/420 (67%), Positives = 362/420 (87%), Gaps = 0/420 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKP+DK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GVDP ++K+  KV      +F ++A  W ++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS+Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPF+YAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

74) Ser39006_0951 in NC_022268


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  510 bits (1923),  Expect = 6e-146, Method: Compositional matrix adjust.
 Identities = 276/415 (67%), Positives = 356/415 (86%), Gaps = 1/415 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVHPNGSKYWRFRFRFGGKQHLMAFGVYPEVS  60
            MALTD+K+R+AKP +K Y L DG GMFLLVHPNGS+YWR+R+R+ GK+  +A+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKREAARKLVAAGIDPREQKRAVQEEQAKAVFTFEFVAREWHATNKKWSEEHSRR  120
            L++AR KR+ ARKL++ G+DP EQKRA +   +   ++FE +AR WHA+NK+W++ HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFSAIGKRNVAELKTRDLLAPIKTVEQSGRLEVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F+ IG+R+++ L+T DLL P+++ E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTRLSVELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R PELL RI+SY G+P+T+L+V L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIEGVKHSHRGSKMRTPHLVPLSRQALVILKQIQQ  300
            SELR+ARWSEID++ +MWTIP+EREP+ GVK SHRGSKMRTPHLVPLS+Q + IL ++Q 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  VSGDHELIFIGDHNPRKPMSENTVNNALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G++ LIF G H+PRKP+SENTVN+ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDANREKGVSPFDFGK  415
            DAVERQMSH ERN+VRAAYIHKAEHL+ERRLMLQWWADFLDANRE+ +SPF+++K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

75) intB in NC_007946


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  509 bits (1919),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 280/420 (67%), Positives = 361/420 (86%), Gaps = 0/420 (0%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD K+R+AKP+DK YKLTDG+GM LLVHPNGS+YWRL+YR  GK+K LALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVRRDEARKLLANGVAPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV  120
            L++AR +RDEARKL+++GV P ++K+  KV      +F ++A  W ++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL++I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF  300
            ELR+ARWSEID++ ++WTIP+EREP+PGVK SHRGSKMRT HLVPLS+Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
             G ++LIF G HD++KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK  420
            AVERQMSH ERN+VRAAYIHKAEHLEERRLMLQWWADFLDANRE+ ISPF+YAKINNPLK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

76) H650_18245 in NC_021500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  507 bits (1913),  Expect = 4e-145, Method: Compositional matrix adjust.
 Identities = 280/418 (67%), Positives = 357/418 (86%), Gaps = 1/418 (0%)

Query  1    MALTDTKVRSAKPEVKEYSLVDGDGMFLLIHPNGSIYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTD+K+R+AKP  K Y L DG GMFLL+HPNGS YWR+R+R+ GK+  +A+GVYPE S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKREEARKLVAAGVDPREHKRAVKEEQAKEVITFESVARDWHASNQKWSESHSGR  120
            L++AR KR+EARKL++ GVDP E+KRA K     + ++FE +AR WHASN++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFDAIGKRNIAELKTRDLLIPIKAVEMSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLLIP++A E     E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI++Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFEIAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSSQALTILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHLVPLS Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLDVNREKGISPFDFGKKNG  418
            DAVERQMSHQERN+VRAAYIHKAEHL ERRLM+QWWAD+LD NRE+ ISPF+++K N 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

77) ECA2879 in NC_004547


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  506 bits (1907),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 279/415 (68%), Positives = 351/415 (85%), Gaps = 1/415 (0%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTD K+R+AKP +K+YKLTDG GMFLLVH NGS+YWRLRYR  GKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQKRDEARKLISAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHAER  120
            LSEAR KRDEARKLIS GVDP E+K+A K    D + +FE +AR WH+ NK+W++SH+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHASNKQWAQSHSDK  119

Query  121  ILKSLSDNIFPAIGGTHVANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQNG  180
            +LKSL  ++FP IG  +++ L+T DLL P+++ E     E+A RL+QR++A+M YAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAIMPGKVEHRPALELDRLPELLGRIDGYKGREFTKWVINLSLLIFIRS  240
            +I YNPA DMAGA+   K +HRPAL+L RLPELL+RI++YKG+  T+  + L+LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWPEIDFERSLWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKIRE  300
            SELR+ARW+EID++ ++WTIP+EREP+PGVKFS+RGSKM+TPHLVPLS+Q + IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  VSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  L+F G H +RKP+SE TVNKAL+ MGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERAISAFDFAK  415
            DAVERQMSHQERNGVRAAYIHKAEHL+ERRLMLQWWADFLDANRER IS+F++AK
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

78) KO11_22995 in NC_017660


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  506 bits (1907),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 275/417 (66%), Positives = 353/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK+S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKIN  417
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRER I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

79) EKO11_4043 in NC_016902


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  506 bits (1907),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 275/417 (66%), Positives = 353/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK+S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKIN  417
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRER I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

80) LY180_22420 in NC_022364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  506 bits (1907),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 275/417 (66%), Positives = 353/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK+S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKIN  417
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRER I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

81) WFL_22550 in NC_017664


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  506 bits (1907),  Expect = 1e-144, Method: Compositional matrix adjust.
 Identities = 275/417 (66%), Positives = 353/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK+S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERAITPFDYAKIN  417
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRER I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

82) EBL_c34780 in NC_017910


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  504 bits (1901),  Expect = 3e-144, Method: Compositional matrix adjust.
 Identities = 285/421 (68%), Positives = 365/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSTSHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFASVGKRNIKDIGTRDLLVPIKAVEKSGRLEVAARLQQRTTAIMRFAVQNG  180
            VLKSLE ++F+ +G+R+I  + T DLL+P++A E     E+A+RLQQR +A+MR+AVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAIATAKRKHRAALDLNRIPELLHRIDNYTGRPLTRLAVDLTLLVFIRS  240
            +I YNPA ++AGA++T KR+HR+ALDL+R+PELL RI++Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKIKS  300
            SELR+ARW+E+D++ AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKKEVCGHGFRTMACSSLIESGLWSR  360
              G+  LIF G HDPRKP+SENTVNKALRVMGYDT ++VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKGVSPFDFGNNGNVL  420
            DAVERQMSHQER++VRAAYIHKAEHL ERRLMLQWWAD+LDANRE+ +SPF++++  N L
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  K  421
            K
Sbjct  420  K  420

83) EAM_3037 in NC_013971


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  503 bits (1898),  Expect = 6e-144, Method: Compositional matrix adjust.
 Identities = 284/420 (68%), Positives = 363/420 (87%), Gaps = 0/420 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R+AKPTDK YKLTDG GM LLVHPNGSRYWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEELAVEWHATNKKWSEEHSRRV  120
            L++AR++RDEARKL+++++DP ++K+  KV  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFIRSS  240
            + YNPA +M GA+++ +RQHRPAL+L R PELL RI+SY G+P+T LAV L LLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQIKTF  300
            ELR+ARWSEID++ +MW IPAERE++ GVK S+RGSKMRTPHLVPLS+Q +AIL +++T 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGLWSRD  360
            +G++ LIF G H+PRKP+SENTVNK+LRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKINTSIK  420
            AV RQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ +SPF++AKIN ++K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

84) intB in NC_013961


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  503 bits (1898),  Expect = 6e-144, Method: Compositional matrix adjust.
 Identities = 284/420 (68%), Positives = 363/420 (87%), Gaps = 0/420 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R+AKPTDK YKLTDG GM LLVHPNGSRYWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEELAVEWHATNKKWSEEHSRRV  120
            L++AR++RDEARKL+++++DP ++K+  KV  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFIRSS  240
            + YNPA +M GA+++ +RQHRPAL+L R PELL RI+SY G+P+T LAV L LLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQIKTF  300
            ELR+ARWSEID++ +MW IPAERE++ GVK S+RGSKMRTPHLVPLS+Q +AIL +++T 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGLWSRD  360
            +G++ LIF G H+PRKP+SENTVNK+LRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKAVSPFDFAKINTSIK  420
            AV RQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ +SPF++AKIN ++K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

85) PAGR_g3659 in NC_017554


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  503 bits (1897),  Expect = 7e-144, Method: Compositional matrix adjust.
 Identities = 287/417 (69%), Positives = 362/417 (87%), Gaps = 1/417 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAAKVEQEQEAITFEVVAREWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFDAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSRQAVAILEKIKS  300
            SELR+ARW+E+D++ AMWTIP+EREPL GVK S+RGSKM+TPHLVPLS+Q VAIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGVRTMACSSLIESGLWSR  360
              G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHG R+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDANRVKGISPFDFSKNN  417
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLMLQWWAD+LDANR + ISPF+++K N
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

86) YPK_3676 in NC_010465


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  503 bits (1896),  Expect = 8e-144, Method: Compositional matrix adjust.
 Identities = 293/421 (70%), Positives = 366/421 (87%), Gaps = 1/421 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARKL+++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHLVPLS+Q +AIL+ +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLDANRQQAISPFDYAKVNNLF  420
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD LDANR++ ISPF+YAK+NN +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  K  421
            K
Sbjct  420  K  420

87) ECENHK_02620 in NC_018405


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  502 bits (1893),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 284/415 (69%), Positives = 362/415 (88%), Gaps = 1/415 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFASIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGERELLEGVKHSQRGSKMRTPHLIPLSRQALTILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+ERE L GVK S+RGSKMRTPHL+PLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
              G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKVVSPFDFAQ  415
            DAVERQMSHQER++VRAAYIHKAEHL ERRLMLQWWAD+LDANRE+ +SPF++A+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

88) H650_18115 in NC_021500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1890),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 285/415 (69%), Positives = 364/415 (88%), Gaps = 1/415 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPTENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAIIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F++IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFAHWSEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSQQALAILEKIKS  300
            SELR+A+WSE+D++ AMWTIP+EREPL GVK S+RGSKM+TPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRDLIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
              G+ +LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREIGVSPFDFGK  415
            DAVERQMSHQER++VRAAYIHKAEHL ERRLMLQWWAD+LDANRE  +SPF+++K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

89) YpAngola_A4051 in NC_010159


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1890),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVSTGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

90) Dd586_0394 in NC_013592


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1891),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 282/416 (68%), Positives = 360/416 (87%), Gaps = 0/416 (0%)

Query  1    MALTDIKVRIAKPSDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R AKP+DK YKLTDG GM LLVHPNGS+YWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGTDPGDKKKSDKVEQSEALTFKEVAIEWHSTNKKWSQEHSHRV  120
            L++AR++RDEARKL+++G DP ++K++ KV     L+F ++A  WH++NK+W+Q HS++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEQSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASSNRQHRPALDLKHTPELLRRIDNYTGRPLTRLAVELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPALDL + PELL RI++Y G+P+T+LAV L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFDTALWTIPPEREPIDGVKHSHRGSKMRTPHLVPLSRQALATLKQIQQF  300
            ELR+ARWSEID+D A+WTIP+EREP+ GVK SHRGSKMRTPHLVPLS+Q +A L ++Q  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SCDHELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
            + ++ LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKVVSAFDFGKVS  416
            AVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ +S+F+++K++
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

91) Entcl_3878 in NC_014618


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1891),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 276/415 (67%), Positives = 355/415 (86%), Gaps = 1/415 (0%)

Query  1    MALTDIKVRSAKPQEKEYTLVDGDGMFLLIHPNGSKYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTD K+R+AKP +K Y L DG GMFLL+HPNGS+YWR+R+R+ GK+  +A+GVYPE S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKREEARKLVAAGIDPREHKRAVKEQQAKENITFESVAREWHAANKKWSEEHSRR  120
            L++AR KR+EARKL++ G+DP E+KRA K   +  +++FE +AR WHA+NK+W++ HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRYAVQSG  180
            VLKSLE ++FP IG+R I +++T DLL+P++  EA    E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRVHRPALELKRLPELLHRIDSYTGRPLTRLAVELTLLIFIRS  240
            +I YNPA +MAGA+++ +R HRPAL+L RLPELL RI+SY G+P+T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFERAMWTIPAEREAIEDVKHSQRGSKMRTPHLVPLSRQALAILKQVHK  300
            SELR+ARWSEID++ AMWTIPAERE++ +VK S+RGSKMRTPHLVPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  LSGERDFVFIGDHNPLKPMSENTVNKALRVMGYDTKVDVCGHGFRAMACSSLIESGLWSR  360
             +GE +++F G H+P KP+SENTVNKALRVMGYDT  DVCGHGFRAMACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADLLDVNREREVSPYDFGK  415
            DAVERQMSH ERN+VRAAYIHKAEHL+ERRLMLQWWAD+LD NRER +SP++++K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

92) A1122_08715 in NC_017168


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

93) YPA_2939 in NC_008150


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

94) intB in NC_005810


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1888),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  72
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  73   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  132
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  133  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  192
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  193  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  252
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  253  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  312
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  313  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  372
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  373  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  431
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

95) intB in NC_003143


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

96) intB in NC_017154


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

97) intB in NC_017160


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

98) intB in NC_004088


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1888),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  72
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  73   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  132
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  133  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  192
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  193  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  252
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  253  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  312
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  313  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  372
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  373  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  431
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

99) YPN_0651 in NC_008149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

100) intB in NC_014029


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  501 bits (1889),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 287/419 (69%), Positives = 363/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

101) A225_0566 in NC_018106


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  500 bits (1886),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 275/420 (66%), Positives = 355/420 (85%), Gaps = 1/420 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPNGSKYWRFRFRFGGKQHLMAFGVYPEIS  60
            MALTD+K+R+AKP +K Y L DG GM LLV PNGS+YWR+R+R+ GK+  +A+GVYPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARKKREEARKLVAAGIDPREHKRALKEEQAKEIITFEKVAREWLATNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W A+N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTCNIAELGTRDLLAPIKAVEVSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG  +I+ L T DLL P++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASGNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWANFLDANREKSISPFDFAKINNPM  420
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWA+FLDANRE+ ISPF++AKINNP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

102) YPDSF_3248 in NC_009381


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  498 bits (1879),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 286/419 (69%), Positives = 362/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRHRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLR R+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

103) intB in NC_016514


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  498 bits (1877),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 278/416 (67%), Positives = 362/416 (88%), Gaps = 0/416 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R+AKPTDK YKLTDG GM LLVHPNGS+YWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrddarKLLANSIDPGDKKKNDKVEQEEARTFEQLAIEWHATNKKWTEEHSRRV  120
            L++AR++RD+ARKL+++++DP ++K+  KV  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMAGAVASSNRQHRPALELRRTPELLQRIDSYTGRPLTRLAIELTLLVFIRSS  240
            + YNPA +MAGA+++ +RQHRPAL+L R PELL RI+SY G+P+T+LA+ L LLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWTIPAEREAIEGIKHSQRGSKMHTPHLVPLSRQALAILKQVHKL  300
            ELR+ARWSEID++ +MWTIPAERE++ G+K S+RGSKM+TPHLVPLS+Q +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGLWSRD  360
            +G+ +++F G HD RKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDANREKAVSPFDFAKLS  416
            AVERQMSH ERN+VRAAYIHKAEHL+ERRLMLQWWADFLDANRE+ +SPF++AK++
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

104) Ent638_0463 in NC_009436


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  498 bits (1877),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 284/416 (69%), Positives = 359/416 (87%), Gaps = 0/416 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDSNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R+AKPTDK YKLTD+ GM LLVHPNGSRYWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEARTFEQLAVEWHATNKKWSEEHSRRV  120
            L++AR++RDEARKL+++++DP ++K+  KV  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+A+RLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDSYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+SY G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWTIPPEREPIPGVKHSHRGSKMRTPHLVPLSKQALEILRQIKHF  300
            ELR+ARWSEID++ +MWTIP+EREP+PGVK SHRGSKMRTPHLVPLSKQ + IL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGEYELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKD  360
             GE  LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKIN  416
            AVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ I+PF+YAKIN
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

105) intB in NC_017265


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  497 bits (1876),  Expect = 3e-142, Method: Compositional matrix adjust.
 Identities = 286/419 (69%), Positives = 362/419 (87%), Gaps = 1/419 (0%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWYASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR W ASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L T DLL P++A E     ++ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHL+PLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLNTS  419
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLM+QWWAD+LDANRE+ +SPF++AK+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

106) SbBS512_E4814 in NC_010658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  496 bits (1872),  Expect = 7e-142, Method: Compositional matrix adjust.
 Identities = 271/417 (65%), Positives = 351/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEEHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG+++I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+ Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RG+KMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPSKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDP KP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKIN  417
            DAVERQMSH ERN+VRAAYIHKAEHL+ER+LMLQWWADFLDANRE+ I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

107) EC042_4741 in NC_017626


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  496 bits (1870),  Expect = 9e-142, Method: Compositional matrix adjust.
 Identities = 270/415 (66%), Positives = 352/415 (85%), Gaps = 1/415 (0%)

Query  1    MALTDIKVRSAKPQEKEYTLADGDGMFLLIHPNGSKYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTD K+R+AKP +K Y L+DG GMFLL+HPNGS+YWR+R+R+ GK+  +A+GVYPE S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKREEARKLVAAGIDPREHKRAVKEEQTKEAITFESVAREWHAVNKKWTEEHSRR  120
            L++AR KR+EARKL++ G+DP E+KRA K     + ++FE +AR WHA NK+W++ HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRCAVQSG  180
            VLKSLE ++FP IG+R I +++T DLL+P++  EA    E+ASRLQQR +A+MR AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRVHRPALELKRLPELLQRIDSYSGRPLTRLAVELTLLIFIRS  240
            +I YNPA +MAGA+++ +R HRPAL+L RLPELL RI+SY G+P+T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWPEIDFERAMWTIPAEREAIEGVKHSERGSKMRTPHLVPLSRQALAILKQVHK  300
            SELR+ARW+EID++ AMWTIPAERE++ GVK S+RGSKMRTPHLVPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  LSGERDFVFVGDHNPCKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGLWSR  360
             +GE +++F G H+P KP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  NAVERQMSHMERNSVRAAYIHKAQHLDERKMMLQWWADFLDVNRVKGVSPFDFAK  415
            +AVERQMSH ERN+VRAAYIHKA+HL+ER++MLQWWADFLD NR + +SPF++AK
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

108) KPN2242_01530 in NC_017540


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  495 bits (1867),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 285/421 (68%), Positives = 362/421 (86%), Gaps = 5/421 (1%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANDVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL++++VDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAVIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTTIMRYAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +++MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYTGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVNFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKIKS  300
            SELR+ARWSE++++ AMWTIP+EREPL GVK S+RGSKMRTPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRK----NTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  356
              G+  LIF G HDPRK    NTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  357  DAVERQMSHQERNTVRAAYIHKAEHLGERRLMLQWWADYLDANKMAAITPFDYAKINSPF  416
            DAVERQMSHQERN VRAAYIHKAEHL ERRLMLQWWAD+LDAN+   I+PF+YAKIN+P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  417  R  417
            +
Sbjct  420  K  420

109) CFSAN002050_05850 in NC_021818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  494 bits (1861),  Expect = 5e-141, Method: Compositional matrix adjust.
 Identities = 271/418 (65%), Positives = 356/418 (86%), Gaps = 1/418 (0%)

Query  1    MALTDTKVRSAKPEDNANPLSDGDGLFLLVHANGSKYWRFRFRFGGKQHVMAFGVYPEVS  60
            MALTD+K+R+AKP D+A  L+DG G+FLLVH+NGS+YWR+R+R+ GK+  +A+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVAAGIDPRAHKRAVKEEQAKEIITFEKVARDWLATNQKWSEDHAER  120
            L++AR KR+EARKL++ G+DP  +KRA K     ++ +FE +AR W A+N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNVFPAIGTRNIAELSTRDLLLPIKAVETSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE +VFP IG R+I+ L+T DLL+P++A E+    E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASGNRKHRPALALKRIPELLQKIDGYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +R+HRPAL L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPDVKHSHRGSKMHTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+P+VK SHRGSKM+TPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGKHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              G + LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMERNSVRAAYIHKAEFIDERKLMLQWWADFLDANREKGITPFDYAKINQ  418
            DAVERQMSH ERN+VRAAYIHKAE ++ER+LMLQWWADFLDANRE+ I+PF+YAKIN+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

110) KPK_4978 in NC_011283


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  493 bits (1859),  Expect = 6e-141, Method: Compositional matrix adjust.
 Identities = 294/422 (70%), Positives = 368/422 (88%), Gaps = 1/422 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRlltqlaveltllvFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+ +TQLAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGERELLDGVKHSQRGSKMRTPHLVPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
              G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDANREKIFSPFDYAKINNPL  420
            DAVERQMSHQER++VRAAYIHKAEHL ERRLMLQWWAD+LDANRE+++SPF+YAKINNPL
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  SQ  422
             Q
Sbjct  420  KQ  421

111) int in NC_011741


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  488 bits (1841),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 282/414 (69%), Positives = 355/414 (86%), Gaps = 1/414 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTD K+R++KP+DK++KLTDG GM LL++PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHSER  120
            L+EAR KRDEA+KL+S+G+DP E+K+A K+     L+FE +AR WH A +++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH-ASNKQWAQSHSDK  119

Query  121  VLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQNG  180
            VLKS+E  +F  IG R I+ LNT DLL P++A EA    E+ASRLQQR +AVMRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFIRS  240
            +I YNPA +MAGA++  KR HRPAL + R++ELL RI+S+KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKDIRE  300
            SELR+ARWSEID+DNAMWTIP+EREPLPGVK SHRGSKM+TPHLVPLS+Q + +L +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGECELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKWSR  360
             +GE  L+F G HD RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESG WSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLNALKDRFISPFDFT  414
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLMLQWWAD+L+A ++RFISPF+++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

112) Ser39006_3432 in NC_022268


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  488 bits (1839),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 274/414 (67%), Positives = 350/414 (85%), Gaps = 0/414 (0%)

Query  1    MALTDLKVKSAKPSSKPIKLTDGFGMHLLVHTNGSKYWRFQYRFAGKQKMLALGVYPSVS  60
            MALTD K+++AKP+ K+ KLTDG GM LLVH NGS+YWR++YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARERRDNARKLIANGIDPSEKKKADKIEESGALTFETVARSWHSSNKTWSEGHRTLI  120
            L+EAR +RD+ARKLI++G+DP E+K+A K+     L+FE +AR WH+SNK W+++H   +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LNSLTTHVFPIIGQRNVTDLKTRDLLVPVKKAEQTGHLELASRLQQRITAIMRYAVHNAL  180
            L+SL THVFP+IG+R++T L+T DLL+PV+ AE     E+ASRLQQRI+A+MRYAV++++
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAYDLAGAIATVKSVHRPALSLERIAELMERIEAYKGKGLTQLAVRLCLLTFIRSS  240
            I  NPA D+AGA++TVK  HRPAL L R++EL+ RI +YKG+ +TQLAV L LL FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEFDFKNALWTIPAEREPLKNIKFSHRGSKMKSPHLVPLSKQSLAILKEIKAI  300
            ELR+ARWSE+D+ NA+WTIPAEREPL  +KFSHRGSKM++PHLVPLSKQ +AIL E+++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGAHKFVFTGFSYADKPISENTINKALRAMGYNTQKDVCCHGFRTMACSALIESGLWSRD  360
            +G + ++FTG   + KPISENT+NKALR MGY+T +DVC HGFR+MACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERSSVRAAYIHKAEHLDERRLMLQWWANFLDANSNCMIRPFEFAK  414
            AVERQMSHQER++VRAAYIHKAEHL+ERRLMLQWWA+FLDAN +  I PFE+AK
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

113) ECO103_5061 in NC_013353


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  487 bits (1837),  Expect = 4e-139, Method: Compositional matrix adjust.
 Identities = 276/414 (67%), Positives = 356/414 (86%), Gaps = 0/414 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTD K+R+AKPTDK YKLTDG GM LLVHPNGS+YWRL+YR+ GK+K LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrddarKLLANGIDPGDKKKNDKIEQEEARTFEQLAIEWHATNKKWSEEHSRRV  120
            L++AR++RD+ARKL+++G+DP ++K+  K+  +   +FE++A  WHA+NK+W++ HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFPAIGKRNIADLKTRDLLAPIKAVELSGRLEVASRLQQRTTAIMRYAVQSGL  180
            LKSLE ++FP IG+R+I+ L+T DLL P++A E     E+ASRLQQR +A+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMVGAVASNNRQHRPALQLKLIPELLRRIDSYTGRPLTRLAVELTLLVFIRSS  240
            + YNPA +M GA+++ +RQHRPAL+L  +PELL RI+SY G+P+T+LAV L LLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSHQALAILKDVYKL  300
            ELR+ARWSEID++ +MWTIPAERE++ GVK S+RGSKMRTPHLVPLS Q +AIL ++   
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD  360
            +G+ +++F G HD RKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERSSVRAAYIHKAEHLDERRLMLQWWADFLDANRESEVSPYDFGK  414
            AVERQMSH ER++VRAAYIHKAEHL+ERRLMLQWWADFLDANRE  +SP++++K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

114) KOX_09480 in NC_016612


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  487 bits (1835),  Expect = 6e-139, Method: Compositional matrix adjust.
 Identities = 279/416 (68%), Positives = 359/416 (87%), Gaps = 0/416 (0%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGSGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPEIk  60
            MALTD K+R+AKPTDK YKLTDG+GM LLVHPNGS+YWRL+YR+ GK+K LALGVYPE+ 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   ladararrdearkllaNGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV  120
            L++AR++RDEARKL+++GVDP ++K+  KV      +F ++A  WH++NK+W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLEDNLFAALGERNITELKTRDLLAPIKAVEMSGRLEVAARLQQRTSAIMRYAVQSGL  180
            LKSLE ++F+ +G+R+IT L+T DLL P++A E     E+A+RLQQR SA+MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFIRSS  240
            I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQIKQF  300
            ELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVPLSKQ +AIL +++  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  CGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKD  360
             GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHMERNSVRAAYIHKAEHLDERKFMLQWWADFLDVNREKGITPFDYAKIN  416
            AVERQMSH ERN+VRAAYIHKAEHL+ER++MLQWWADFLD NRE+ I+PF+YAKIN
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

115) intB in NC_011748


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  485 bits (1830),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 265/396 (67%), Positives = 342/396 (87%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A  L+LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFCGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH ERN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDANREKFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLDANRE+FISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

116) YpsIP31758_3540 in NC_009708


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  485 bits (1827),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 279/405 (69%), Positives = 352/405 (87%), Gaps = 1/405 (0%)

Query  1    MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEIS  60
            MAL+D K+R+AKP +KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG+YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR  120
            L++AR++RDEARK +++GVDP E K+A KV  + + ++FE +AR WHASN+QW+++HS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+IT L T DLL P++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA +MAGA++T KR+HR+AL+L+R++ELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKS  300
            SELR+ARWSE+D++ AMWTIP+EREPL GVK SHRGSKMRTPHLVPLS+Q +AIL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  DVCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFGGKQA  405
            DAVERQMSHQERN+VRAAYIHKAEHL+ER+LM+QWWADF+++++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

117) ECO55CA74_24440 in NC_017656


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  485 bits (1827),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 280/416 (68%), Positives = 356/416 (86%), Gaps = 1/416 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTD K+R++KP+DK++KLTDG GM LL++PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFESVARDWHKACKRKWSDSHSER  120
            L+EAR KRDEA+KL+S+G+DP E+K+A K+     L+FE +AR WH A +++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH-ASNKQWAQSHSDK  119

Query  121  VLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQNG  180
            VLKS+E  +F  IG+R I+ LNT DLL P++A EA    E+ASRLQQR +AVMRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLARIDSFKGRkltklavkltllIFIRS  240
            +I YNPA +MAGA++  KR HRPAL + R++ELL+RI+S+KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTKIKE  300
            SELR+ARWSEID++NAMWTIP+EREPLPGVK SHRGSKMRTPHLVPLS Q +A+L+ ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGDHELVFIGDHNFRKPMSENTVNKALRAMGYDTTVEVCGHGFRAMACSALIESGLWSK  360
             +G++ L+F G H+ RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQVSPFDFKKT  416
            DAVERQMSHQERN+VRAAYIHKAEHL+ER+LMLQWWAD+LD  R R +SPF++ K 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

118) intB in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1825),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 341/396 (87%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEAR+L+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLAKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH ERN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

119) ETAC_14745 in NC_020796


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 280/416 (68%), Positives = 354/416 (86%), Gaps = 1/416 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLVNPNGSKYWRLQYRFNGKQKILALGVYPTVS  60
            MALTD K+R++KP+DK++KLTDG GM LLV+PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFESVARDWHTACKRKWSDSHSER  120
            L+EAR KRDEA+KL+S+G+DP E+K+A K+     L+FE +AR WH A +++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH-ASNKQWAQSHSDK  119

Query  121  VLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVAARLQQRTTAVMRYAVQNG  180
            VLKS+E  +F  IG R I+ LNT DLL P++A EA    E+A+RLQQR +AVMRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFIRS  240
            +I YNPA +MAGA++  KR HRPAL + R++ELL RI+S+KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAIRE  300
            SELR+ARWSEID+DNAMWTIP+EREPLPGVK SHRGSKM+TPHLVPLS+Q + +L  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTAEVCGHGFRAMACSALIESGLWSK  360
             +GE +L+F G HD RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHIDERKLMLQWWADYLDLLRIRQVSPFDFKRI  416
            DAVERQMSHQERN+VRAAYIHKAEH++ER+LMLQWWAD+LD  R R +SPF++ +I
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

120) EcDH1_3727 in NC_017625


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

121) intB in NC_017638


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

122) ETEC_4611 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 341/396 (87%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEAR+L+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH ERN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

123) intB in NC_011750


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 341/396 (87%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEAR+L+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH ERN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

124) intB in NC_010473


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

125) intB in NC_007779


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

126) intB in NC_011751


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 264/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDEARKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

127) intB in NC_012971


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1823),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 263/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDE+RKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

128) intB in NC_012892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1823),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 263/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDE+RKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

129) ECBD_3766 in NC_012947


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1823),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 263/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDE+RKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

130) intB in NC_012967


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1823),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 263/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDE+RKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

131) intB in NC_017663


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  484 bits (1823),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 263/396 (67%), Positives = 340/396 (86%), Gaps = 0/396 (0%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LLVHPNGS+YWRL+YR  GK+K LALGVYPE++L++AR +RDE+RKL+++GVDP ++K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL  120
            +  KV      +F ++A  WH++NK+W++ H+++VLKSLE ++F+ +G+R+I+ L+T DL
Sbjct  86   RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL  145

Query  121  LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE  180
            L P++A E     E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+
Sbjct  146  LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD  205

Query  181  LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP  240
            L R+PELL++I+SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID++ ++WTIP+EREP
Sbjct  206  LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP  265

Query  241  IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS  300
            +PGVK SHRGSKMRT HLVPLS Q +AIL +++   G ++LIF G HD++KP+SENTVN 
Sbjct  266  LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK  325

Query  301  ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL  360
            ALRVMGYDT  +VCGHGFR+MACS+L+ESGLWSRDAVERQMSH  RN+VRAAYIHKAEHL
Sbjct  326  ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL  385

Query  361  EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ  396
            EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct  386  EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ  421

132) ETAF_2789 in NC_017309


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  483 bits (1822),  Expect = 6e-138, Method: Compositional matrix adjust.
 Identities = 283/416 (69%), Positives = 355/416 (86%), Gaps = 1/416 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVS  60
            MALTD K+R++KP+DK++KLTDG GM LL++PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVFDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHSER  120
            L+EAR KRDEA+KL+ +G+DP E+K+A K+     L+FE +AR WH A +++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH-ASNKQWAQSHSDK  119

Query  121  VLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQNG  180
            VLKS+E  +F  IG+R I+ LNT DLL P++A EA    E+ASRLQQR +AVMRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFIRS  240
            +I YNPA +MAGA++  KR HRPAL + R++ELL RI+S+KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEIKE  300
            SELR+ARWSEID+DNAMWTIPAEREPLPGVK SHRGSKMRTPHLVPLS Q +A+L+E++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGDHELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGLWSK  360
             +G++ L+F G HD RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQVSPFDFKKT  416
            DAVERQMSHQERN+VRAAYIHKAEHL+ER+LMLQWWAD+LD  R R +SPF++ K 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

133) SARI_03082 in NC_010067


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  483 bits (1821),  Expect = 6e-138, Method: Compositional matrix adjust.
 Identities = 272/417 (66%), Positives = 353/417 (85%), Gaps = 1/417 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVKPNGSRYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GMFLLV PNGSRYWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADarkkreearrLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EAR+L++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVETSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E+    E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  VIDYNPAQERAGAVASSNRQHRPALELKRIPELLEKIDGYIGRPLTRWATELTLLIFIRS  240
            +I YNPA + AGA+++ +RQHRPAL+L R+PELL +I++Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELCFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SEL +ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK  360
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHMEHNSVRAAYIHKAEHLDERKLMLQWWADFLDANRDKGITPFDYAKIN  417
            DAVERQMSH E+N+VRAAYIHKAEHL+ER+LMLQWWADFLDANR++ I+PF+YAKIN
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

134) W5S_1543 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  483 bits (1821),  Expect = 7e-138, Method: Compositional matrix adjust.
 Identities = 279/418 (67%), Positives = 354/418 (85%), Gaps = 1/418 (0%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTD K+R+AKP +K+YKLTDG GMFLLVH NGS+YWRLRYR  GKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHAER  120
            LSEAR KRDEARKLI+ GVDP E+K+A K    D + +FE +AR WH+ NK+W++SH+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHASNKQWAQSHSDK  119

Query  121  ILKSLSDNIFPAIGSKHISDLKTRDLLRPIKSVERSGRLEVAKRLKQRVTAIMTYAVQNG  180
            +LKSL  ++FP IG+++I+ L+T DLL P+++ E     E+A RL+QR++A+M YAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFIRS  240
            +I YNPA DMAGA+   K +HRPAL L RLPELL+RI++YKG+  T+  + L+LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILTKIRE  300
            SELR+ARW+EID++ A+WTIP+EREP+PGVKFS+RGSKM+TPHLVPLS+Q + IL+ ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  VSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  L+F G H +RKP+SE TVNKAL+ MGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERGVSPFDFGKLTT  418
            DAVERQMSHQERNGVRAAYIHKAEHL+ERRLMLQWWADFLDANRER +SPF+++K+  
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

135) CKO_03532 in NC_009792


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  479 bits (1804),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 277/413 (68%), Positives = 351/413 (85%), Gaps = 1/413 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTD K+R++KP+DK++KLTDG GM LL++PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVSVGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHSER  120
            L+EAR KRDEA+KL+S G+DP E+K+A K+     L+FE +AR WH++ +++W++SHS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHAS-NKQWAQSHSDK  119

Query  121  VLKSMEDGLFTTIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQNG  180
            VLKS+E  +F  IG+R I+ LNT DLL P++A EA    E+ASRLQQR +AVMRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAIAVAKRIHRPALPFERFSELLERIDNFKGRkltklavkltllIFIRS  240
            +I YNPA +MAGA++  KR HRPAL + R++ELL RI+++KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAIRE  300
            SELR+ARWSEID++NAMWTIP+EREPLPGVK SHRGSKM+TPHLVPLS+Q + +L  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGEFDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKWSR  360
             +GE +L+F G HD RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESG WSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDETTKRRIAPFDF  413
            DAVERQMSHQERN+VRAAYIHKAEHL+ERRLMLQWWAD+LD    R I+PF++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

136) Pecwa_1669 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  478 bits (1800),  Expect = 3e-136, Method: Compositional matrix adjust.
 Identities = 278/417 (67%), Positives = 350/417 (84%), Gaps = 1/417 (0%)

Query  1    MALTDIKVRSTKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTD K+R++KP +K+YKLTDG GMFLLVH NGS+YWRLRYR  GKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDDAQTFEVVARAWHADNKKWSGSHAER  120
            LSEAR KRDEARKLI+ GVDP E+K+A K    D   +FE +AR WHA NK+W+ SH+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHASNKQWAQSHSDK  119

Query  121  ILKSLSDNIFPAIGGAHIANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQNG  180
            +LKSL  ++FP IG  +I+ L+T DLL P+++ E     E+A RL+QR++A+M YAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFIRS  240
            +I YNPA DMAGA+   K +HRPAL L RLPELL+RI++YKG+  T+  + L+LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKIRE  300
            SELR+ARW+EID++ A+WTIP+EREP+PGVKFS+RGSKM+TPHLVPLS+Q + IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  VSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSR  360
             +G+  L+F G H +RKP+SE TVNKAL+ MGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNGVRAAYIHKAEHLDERKLMLQWWADFLDANRERGVSPFDFGKVK  417
            DAVERQMSHQERNGVRAAYIHKAEHL+ER+LMLQWWADFLDANRER +SPF+++K++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

137) SPC_4619 in NC_012125


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  476 bits (1794),  Expect = 9e-136, Method: Compositional matrix adjust.
 Identities = 273/415 (66%), Positives = 349/415 (85%), Gaps = 1/415 (0%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVS  60
            MALTD K+R++KP+DK++KLTDG GM LL++PNGS+YWRL+YR+ GK+K LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDFHSER  120
            L+EAR KRDEA+KL+S+G+DP E+K+A K+     L+FE +AR WH A +++W++ HS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH-ASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFSSIGQRKIAELKTKDLLDPVKTVAASGRLEVAARLQQRTTVIMRYAVQNG  180
            VLKSLE ++F+ IG+R I+ L+T DLL PV++  A    E+A+RLQQR + +MRYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMSGAIAVAKRTHRPALPFDRFSELLERIESFKGRkltklavkltllIFIRS  240
            +I YNPA +M+GA++  KR HRPAL + R++ELL RI S+KG+ +T+LAV L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFVNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAIRE  300
            SELR+ARWSEID+ NAMWTIP+EREPLPGVK SHRGSKM+TPHLVPLS+Q + +L  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKWSR  360
             +GE +L+F G HD RKP+SENTVNKALR MGYDTT +VCGHGFRAMACSALIESG WSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDETTKRRIAPFDFDK  415
            DAVERQMSHQERN+VRAAYIHKAEHL+ER+LMLQWWAD+LD    R I+PF++ K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

138) SFV_4227 in NC_008258


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  472 bits (1778),  Expect = 1e-134, Method: Compositional matrix adjust.
 Identities = 270/394 (69%), Positives = 342/394 (87%), Gaps = 1/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS  300
            SELR+ARWSEID++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
            DAVERQMSHQER++VRAAYIHKAEHL ERRLM++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQ  393

139) SFxv_4606 in NC_017328


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  470 bits (1773),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 270/394 (69%), Positives = 342/394 (87%), Gaps = 1/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS  300
            SELR+ARWSEID++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
            DAVERQMSHQER++VRAAYIHKAEHL ERRLM++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQ  393

140) S4839 in NC_004741


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  470 bits (1773),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 270/394 (69%), Positives = 342/394 (87%), Gaps = 1/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS  300
            SELR+ARWSEID++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
            DAVERQMSHQER++VRAAYIHKAEHL ERRLM++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQ  393

141) SF4224 in NC_004337


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  470 bits (1773),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 270/394 (69%), Positives = 342/394 (87%), Gaps = 1/394 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS  300
            SELR+ARWSEID++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR  360
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS+LIESGLWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
            DAVERQMSHQER++VRAAYIHKAEHL ERRLM++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQ  393

142) MU9_135 in NC_020418


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  470 bits (1770),  Expect = 7e-134, Method: Compositional matrix adjust.
 Identities = 284/422 (68%), Positives = 365/422 (87%), Gaps = 1/422 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTDAK+RAAKP DK+YKLTDG GM L+VH NGS+YWRL+YR+ GK+K LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNKKWSEGHSHR  120
            L+EAR KRD ARKLI++G DP E+++  K   + ++ +FE +AR WHA+NK+W+++HS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNIFTAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL P++A E     E+A+RLQQR++A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFIRS  240
            +I YNPA DMAGA++T KR HR+AL+L RLPE+L RI+ YKG+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQIYQ  300
            SELR+ARW EID++NAMWTIPAERE++ GVK SHRGSKMRT HLVPLS+Q + IL ++  
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSK  360
             +G++ LIF G H+PRKP+SENTVN+ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHIDERRLMVQWWADYLDANLEQTISPFDFAKFNNPM  420
            DAVERQMSHQERN+VRAAYIHKAEH++ERRLM+QWWAD+LDAN E+ ISPF++AK+NNP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

Query  421  NH  422
            ++
Sbjct  420  KQ  421

143) ybl123 in NC_012892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  466 bits (1756),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 280/295 (95%), Positives = 291/295 (99%), Gaps = 0/295 (0%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMLMLVHPNSSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTDAKIRAAKPTDKAYKLTDGAGM++LVHPN+SRYWRLRYRILGKEKTLALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARAKRDEARKLISAGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWTQSHSDKV  120
            LSEAR+KRDEARKLIS G+DPCEQKRAKKVVPDLQLSFEHIARRWHASNKQW+QSHSDKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LKSLETHVFPFIGNRDITKLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180
            LKSLETHVFPFIGNRDIT LNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSS  240
            IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVT+LAVMLNLLVFIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRYARWSEIDIENAMWTIPAEREPLPGVNFSHRGSKMRTPHLVPLSKQAVPSLP  295
            ELRYARWSEIDI+NAMWTIPAEREPLPGV+FSHRGSKMRTPHLVPLSKQ V+ L+
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

144) intB in NC_007613


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  466 bits (1758),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 255/392 (66%), Positives = 331/392 (85%), Gaps = 1/392 (0%)

Query  1    MSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHK  60
            M LLV P GS+YWR+R+R+ GK+  +A+GVYP+VSL++AR KR+EARKL++ G+DP E+K
Sbjct  26   MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK  85

Query  61   RAVKEEQAKEIITFEKVAREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRD  120
            RA K     ++ +FE +AR W  +N++W++ H+++V KSLE ++FP IG+++I+ L T D
Sbjct  86   RAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPD  144

Query  121  LLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPAL  180
            LLIP++A E     E+ASRLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL
Sbjct  145  LLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL  204

Query  181  ELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPERE  240
            +L R+PELL +I+ Y G+P+T+ A  L LL+FIRSSELR+ARWSEID++ +MWTIP+ERE
Sbjct  205  DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAERE  264

Query  241  PIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVN  300
            P+PGVK S+RG+KMRTPHLVPLSKQ +AIL +++   GE+ LIF G HDP KP+SENTVN
Sbjct  265  PLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVN  324

Query  301  SALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEH  360
             ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+DAVERQMSH ERN+VRAAYIHKAEH
Sbjct  325  KALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEH  384

Query  361  LDERKLMLQWWADFLDANREKGITPFDYAKIN  392
            L+ER+LMLQWWADFLDANRE+ I+PF+YAKIN
Sbjct  385  LEERRLMLQWWADFLDANRERFISPFEYAKIN  416

145) CFSAN002050_22445 in NC_021818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  464 bits (1747),  Expect = 5e-132, Method: Compositional matrix adjust.
 Identities = 251/414 (61%), Positives = 340/414 (83%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWQLKYRFGGKEKKLAFGAYPTVT  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARKLREEARAVLSTGDDPGVKKQQEKQAKKSGNTFEEVARKWLAGNIRWTEAHAAKA  120
            L++AR  R+EAR ++S G DP  +K+  K       +FE++AR+W A+N +W+++H+ K 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGKIPVTDLKTADLLIPLRVAERKGNLETAARIQQRTTAIMRYAVQESL  180
            L+SLE HVFP+IG+  +T L+T+DLLIP+R AE K   E A+R+QQR +A+MRYAVQ ++
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLTGAIAPPPKNHYPALPLEKMPELLERLEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D++GA++   ++H PAL L ++PELL R+ +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWAEIDLDGAMWTIPAGREPIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW+EID+D AMWTIPA REP+PGV++S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWSKD  360
            +G++ L+F G HDPRKP+SENT+NKALRVMGYDT  DVCGHGFR+MACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDR  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LDA R++F++P+ Y +
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

146) intB in NC_010554


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  463 bits (1745),  Expect = 7e-132, Method: Compositional matrix adjust.
 Identities = 282/420 (68%), Positives = 360/420 (86%), Gaps = 1/420 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTDAK+RAAKP DK+YKLTDG GM L+VH NGS+YWRL+YR+ GK+K LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNQRWSEGHSHR  120
            L+EAR KRD ARKLI++G DP E+++  K   + ++ +FE +AR WHA+N++W+++HS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNIFVAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL P++A E     E+A+RLQQR++A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLERIDDYKGRPltklavkltllvFIRS  240
            +I YNPA DMAGA++T KR HR+AL+L RLPE+L RI+ YKG+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQIYQ  300
            SELR+ARW EID++NAMWTIPAERE++ GVK SHRGSKMRT HLVPLS+Q + IL ++  
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSK  360
             +G++ LIF G H+PRKP+SENTVN+ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADYLDASRGGEISPFSFAKISNEI  420
            DAVERQMSHQERN+VRAAYIHKAEH+EERRLM+QWWAD+LDA+R   ISPF +AKI+N +
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPL  419

147) SARI_03312 in NC_010067


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  461 bits (1738),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 249/414 (61%), Positives = 340/414 (83%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVT  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARKLREEARAVLSAGDDPGVKKQQEKQAKKSGNTFEEVARRWLAGNIRWTEHHAAKI  120
            L++AR  R+EAR ++S G DP  +K+  K       +FE++ARRW A+N +W++ H+ K+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGNIPVADLKTADLLIPLRVAEKKGNLETAARSQQRTTAIMRYAVQESL  180
            L+SLE HVFP+IGN  ++ L+T+DLLIP+R AE K   E A+R QQR +A+MRYAVQ ++
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLTGAIAPPPKNHYPALPLEQIPQLLERLEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D++GA++   ++H PAL L ++P+LL R+ +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWTEIDLDGAMWTIPTQRESIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW+EID+D AMWTIP++RE++PGV++S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESGRWSKD  360
            +G++ L+F G HDPRKP+SENT+NKALRVMGYDT  DVCGHGFR+MACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFVAPYRYDR  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LDA R++F++P+ Y +
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

148) Ent638_2887 in NC_009436


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  458 bits (1724),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 275/413 (67%), Positives = 347/413 (85%), Gaps = 0/413 (0%)

Query  1    MALTDVKVRNAKPADKPVKLTDGNGMHLLVQPSGSKYWRLQYRFSGKQKMLALGVYPEVS  60
            MALTD K+R AKP+DK+ KLTDG GM LLV+P+GS+YWRL+YR+ GK+K LALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSearrrreearQLIANNVDPGEKRKTKKIEEKGLLIFETVARDWHSSNRTWSDSHRKTV  120
            LSEAR +R+EAR+LI++ VDP E++++KK+     L FE +AR WH+SN+ W++SH   V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LSSLITHVFPVIGKRNITELKTRDLLVPLKKAEATGHLELAARLQQRITAIMRYAVHNAL  180
            L SL THVFP IG+R+IT L+T DLL+P++ AEA    E+A+RLQQRI+A+MRYAV++++
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  VDQNPAYDLTGAVTTAKSNHRPAlpleqlpellKRIGTYKGKGITQIAVQLTLLTFIRSS  240
            +  NPA D++GA+TT K +HRPAL L +LPELL RIG+YKG+ +TQ+AV L LL FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEVNFKNSLWTIPAERQVLDGVKYSGRGSKMKTPHLVPLSKQAVVLLKKLHAI  300
            ELR+ARWSE+++ N++WTIPAER+ L GVK+S RGSKM+TPHLVPLSKQ V +L  L++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGENELMFVGFSRDDKPISENTVNKALRTMGYDTKKDVCGHGFRTMACSALIESGLWSRD  360
            +GEN L+F G     KPISENTVNKALR MGYDT +DVCGHGFR+MACSALIESGLWSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVEKQMSHQERNSVRAAYIHKAEHLEERKLMLQWWANYLDTCKEEAITPFTYA  413
            AVE+QMSHQERN+VRAAYIHKAEHLEER+LMLQWWA++LD+ +E  I+PF YA
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

149) MU9_117 in NC_020418


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  458 bits (1724),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 277/415 (67%), Positives = 357/415 (87%), Gaps = 1/415 (0%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTDAK+RAAKP DK+YKLTDG GM L+VH NGS+YWRL+YR+ GK+K LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeFNTFEKVARDWHATNKKWSEGHSHR  120
            L+EAR KRD ARKLI++G DP E+++  K   + ++ +FE +AR WHA+NK+W+++HS++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNIFAAIDKRNIAELKTRDLLEPIKAVEMSGRLGVAARLQQRVTGIMRYAVQSG  180
            VLKSLE ++F+ I++R+I+ L+T DLL P++A E      +A+RLQQR++++MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFIRS  240
            +I YNPA DMAGA++T KR HR+AL+L RLPE+L RI+ YKG+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTPHLVPLSRQAIEILKQIYQ  300
            SELR+ARW EID++NAMWTIPAERE++ GVK SHRGSKMRTPHLVPLS+Q + IL ++  
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGLWSK  360
             +G++ LIF G H+PRKP+SENTVN+ALRVMGYDT  +VCGHGFR+MACS+LIESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADFLFENTHALITPYEFAK  415
            DAVERQMSHQERN+VRAAYIHKAEH+EERRLM+QWWADFL  N + +I+P+E+AK
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

150) intB in NC_017390


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  452 bits (1703),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 262/404 (65%), Positives = 338/404 (84%), Gaps = 0/404 (0%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGGKQKTLALGVYPAVS  60
            MALTD KIR +KP++KA KLTDG GM+LL+HPNGS+YWR++YR+ GK+KTLALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTFSFESVARQWHAGNKKWSEEYKGKI  120
            LS+AR +RDEA+KL++ G DP  +K+  K      +SFE +AR+WHA+NK+W++   +K+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVLQGI  180
            L++LET +FP IGNR+I+ L+T DLL+P++A E K + E+A RLQQR +A+MRYAV  GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFIRSS  240
            + YNPA +M+GA+TT KR HRPAL + R  E+L RI+SY+ + +T+LAV L LL FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREIQEI  300
            ELR+ARWSEID+ +++WTIP+ERE+LPG+K +HRG+KM+TPHLVPLS+Q +AIL E+Q  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESGKWSKD  360
            +G++ +IF G H + KP+SENTVNKALR MGYDT +DVCGHGFR+MACS+LIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLDANRE  404
            AVERQMSHQE N VRAAY H+AEHL+ERRLMLQWWADFLDANRE
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

151) EpC_14570 in NC_012214


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  452 bits (1703),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 262/404 (65%), Positives = 338/404 (84%), Gaps = 0/404 (0%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGGKQKTLALGVYPAVS  60
            MALTD KIR +KP++KA KLTDG GM+LL+HPNGS+YWR++YR+ GK+KTLALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTFSFESVARQWHAGNKKWSEEYKGKI  120
            LS+AR +RDEA+KL++ G DP  +K+  K      +SFE +AR+WHA+NK+W++   +K+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVLQGI  180
            L++LET +FP IGNR+I+ L+T DLL+P++A E K + E+A RLQQR +A+MRYAV  GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  LDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFIRSS  240
            + YNPA +M+GA+TT KR HRPAL + R  E+L RI+SY+ + +T+LAV L LL FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREIQEI  300
            ELR+ARWSEID+ +++WTIP+ERE+LPG+K +HRG+KM+TPHLVPLS+Q +AIL E+Q  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESGKWSKD  360
            +G++ +IF G H + KP+SENTVNKALR MGYDT +DVCGHGFR+MACS+LIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLDANRE  404
            AVERQMSHQE N VRAAY H+AEHL+ERRLMLQWWADFLDANRE
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

152) Rahaq_1192 in NC_015061


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  443 bits (1667),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 244/413 (60%), Positives = 331/413 (81%), Gaps = 6/413 (1%)

Query  1    MPLTDTGIRGSKPKDKPYKLSDSNGLYLLVHSNGSKYWRFRRTINGKDTTRALGMYPIMT  60
            M+LTD+ IR++KP DK+YKL+D+ G++LLVH+NGS+YWR+R  I GK+ T ALG+YP ++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARKARDEFLKSLSQGIDPLHAEKEKIA------SFEEIARQWHARKKTWSSLHSLNV  114
            L+EAR  RDE  K +S+G+DP +  + K        SFE+IAR+WHA +K W+  HS +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  115  MRAFETHLFPEIGSKAINRLTTQDLLAPLRAIEETGKHELASRLQQRTTSIMRYAVQSGL  174
            ++++ETH+FP IG++ I  L T DLL P+RA E     E+ASRLQQR +++MRYAVQSG+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  175  IKYNPAQELTGAIETHKSQHRPALPLERIPELLQKIDSYSGRNLTKIAVKLNLLIFIRSS  234
            I+YNPA +++GA+ T K QHRPAL L R+PELL +I+SY G+ +T++AV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  235  ELRFSRWTEINKEHRLWEIPANREELEKVRFSYRGSKMKMPHLIPLSNQALVLIEELEAL  294
            ELR++RW+EI+ ++ +W IPA+RE L  V+FS RGSKM+ PHL+PLS+Q + ++ EL++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  295  SGDEVLMFPGDHYQHKPMSENTINKALRTMGFDTKTEICGHGFRAMACSALIESGRWSRD  354
            +G++ L+F G H  +KP+SENT+NKALR MG+DT  ++CGHGFRAMACSALIESG WSRD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  355  AVERQMSHQERNSVRAAYIHKAEHMEERRPMLQWWADYLEACRGEFIPPYAFN  407
            AVERQMSHQERN+VRAAYIHKAEH+EERR MLQWWAD+L+A R  FI+P+ + 
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

153) plu4477 in NC_005126


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  434 bits (1633),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 240/415 (58%), Positives = 339/415 (82%), Gaps = 3/415 (0%)

Query  1    MALTDVVARTAKPREQAYKLADAHGLYLMISPGGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD   R+AKP ++AYKL+D+ G++L++ P GS+ W L+YR+ GKE  +A+G YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAKAREKRDEVRLLLADGINPAEKRGEGKKEAQDALITFEKVARDWHRNISQNRWSETHA  120
            L+ AR KRDE R L+++G++P E++  +KK   D  ++FE +AR WH   S+++W+++H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQK-RAKKVVPDLQLSFEHIARRWH--ASNKQWAQSHS  117

Query  121  GRVWRDMERNILPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAVQ  180
            ++V + +E +++P IG+R+I+ L+T DLL P++A E +   ++ASRL+QR++ +MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  NDLIERNPAQDLSGAIAPPKATHRPALKLDKLPDFLARIENYKGRTLTTLALKFTLCVFI  240
            +++I  NPA D++GA++  K  HRPAL L +LP++L+RI +YKG+ +T LA+ + L VFI
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RSSELRFARWTEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRTEHLVPLSRQALALLKEI  300
            RSSELR+ARW+EID+  AMWTIPAERE++PGVK S+RG+KMRT HLVPLS+Q +A+L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  301  QAISGGHELIFPGDRRPTKPMSENTVNNALRVMGYDTTTELCGHGFRTMACSALVESGQW  360
            Q+ +G + LIF G + P KP+SENTVN+ALRVMGYDTT ++CGHGFR+MACSAL+ESG W
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  SRDAVERQMSHQERDSVRAAYIHKAEHIEERRLMLQWWADYLDANREGYVVPYEF  415
            SRDAVERQMSHQER++VRAAYIHKAEH+EERRLMLQWWAD+LDANRE ++ P+E+
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

154) Dd586_0881 in NC_013592


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  431 bits (1622),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 249/414 (61%), Positives = 335/414 (81%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTAS  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP  S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARKLREEARAVLCAGADPGVKKQQDKQARKNGNTFETVSRQWVAANIRWTEAHAAKV  120
            L+ AR  R+EAR ++  G DP  +K+  K       +FE ++R+W A+N +W+++H+ KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGKTPLTDLKTADLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQEGL  180
            L+SLE HVFP+IG+  +T L+T+DLLIP+R AE K   E A+R+QQR + +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLCGAITTPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D+ GA+TT  ++H PAL L RLPELL RI +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW+EID+DNAMWT+PA+REP+ GV+ S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWSKD  360
            +G+ +L+F G HD+RKP+SENT+NKALR MGYDT  D+CGHGFR++ACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEK  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LDA +++FI+++ + K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

155) Dda3937_03406 in NC_014500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  429 bits (1617),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 251/414 (61%), Positives = 336/414 (82%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAAKV  120
            L++AR  R+EAR ++S G DP  +K+  K       +FE IAR+W A+N +W+++H+ KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQEGL  180
            L+SLE HVFP+IGN  +T L+T++LLIP+R AE K   E A+R+QQR + +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLCGAITPPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D+ GA+T   ++H PAL L RLPELL RI +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW+EID+DNAMWT+PA+REP+ GV+ S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWSKD  360
            +G+ +L+F G HD+RKP+SENT+NKALR MGYDT  D+CGHGFR++ACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDVCQHQFIPAYRFEK  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LD  +++FI+++ + K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

156) PC1_0871 in NC_012917


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  427 bits (1608),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 251/414 (61%), Positives = 336/414 (82%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LASARKLREEARTILSVGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAAKV  120
            L+ AR  R+EAR ++S G DP  +K+  K       +FE IAR+W A+N +W+++H+ KV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETATRIQQRTTVIMRYAVQEGL  180
            L+SLE HVFP+IGN  +T L+T++LLIP+R AE K   E A+R+QQR + +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLCGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D+ GA+T   ++H PAL L +LPELL RI +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWTEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW+EID+DNAMWT+PA+REP++GV+ S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNGELLFPGDHDARKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESGRWSKD  360
            +G+  L+F G HD+RKP+SENT+NKALR MGYDT  D+CGHGFR++ACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEK  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LDA +++FI+++ + K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

157) PAU_03981 in NC_012962


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  424 bits (1596),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 239/419 (58%), Positives = 330/419 (79%), Gaps = 2/419 (0%)

Query  1    MKLNARQIETAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   +I +AKP DKAYKL+DG+G++L + P GS+YWR++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   ISLadarakrdeakkLIASGVDPKATQKEAQAEVSGEFNFETIARKWHASNKRWGDYNRA  120
            +SL++AR+KRDEA+KLI+ GVDP   ++  +     +++FE IAR+WHASNK+W++ +  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRSLEQYIFPHIGKVDVRQLKTSHLLAPIRVVDDAGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+SLE  +FP IG+ D+  L+T++LL P+R  +     ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DIIDSNPAIDMAGALTMPKTKHYPALPSNCFPELLERINRYCGRKITRLAVVLTLLTFVR  240
            +II  NPA+DMAGALT  K +H PAL  + +PELL RI  Y G+ +T+LAV+L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEIDFDISVWQIPGQRNPIEGVRYSYRGMKMKSAHIVPLSNQAIDVLQQLK  300
            SSELR+ARW EID+D ++W IP++R+P+ GV++S RG KM+++H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  ELSGDNELLFPGDHDPNKVMSENTVNNALRVMGYDTKTEVCGHGFRAMACSALVESGLWS  360
              +G+N L+F G HDP K +SENTVN+ALRVMGYDT  +VCGHGFRAMACSAL+ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  KDAVERQMSHTERNGVRAAYIHTSEHLEERRLMIQWWADYLDQCKKEFIAPYVFSNKNS  419
            +DAVERQMSH ERNGVRAAYIH +EHLEERRLM+QWWAD+LD  +  FI+P+ +++ N+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

158) Pecwa_0718 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  423 bits (1594),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 251/414 (61%), Positives = 336/414 (82%), Gaps = 0/414 (0%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD+ IR AKP DK+YKL+D+ G++LL+ PNGS+ W+L+YR+ GKEK LA+G YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LASARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHTDKV  120
            L+ AR  R+EAR ++S G DP  +K+  K       +FE IAR+W A+N +W+++H+DKV
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQEGL  180
            L+SLE HVFP+IGN  +T L+T++LLIP+R AE K   E A+R+QQR + +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IASNPANDLYGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFIRSS  240
            I  NPA D+ GA+T   ++H PAL L +LPELL RI +Y G+ +T+LAV LNLL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWVEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLL  300
            ELR+ARW EID+DNAMWT+PA+REP++GV+ S+RG+KM+TPHLVPLSKQ V++L +L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  301  SGNGDLLFPGDHDALKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESGRWSKD  360
            +G+ +L+F G HD+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSALIESG WS+D
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  361  AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDACQHQFIPAYRFEK  414
            AVERQMSHQERN VRAAYIHKAEHL+ER  M+QWW+D+LDA +++FI+++ + K
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

159) ECOK1_4788 in NC_017628


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  422 bits (1589),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 226/422 (54%), Positives = 329/422 (78%), Gaps = 2/422 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP   ++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYITPYDYSKYKEI  420
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD NR+++I+P++Y+K ++ 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

Query  421  LK  422
            LK
Sbjct  419  LK  420

160) Dd703_3541 in NC_012880


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  419 bits (1576),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 244/418 (59%), Positives = 340/418 (82%), Gaps = 3/418 (0%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD   R+AKP +KAYKL+D+ G++LLV PNGS+ W L+YR+ GKE  +A+G YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDALNTFEKVARDWHRNISQNRWSQTHA  120
            L+ AR KRDE R L+SEG++P E++   K  ++  L +FE +AR WH   S+++W+Q+H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWH--ASNKQWAQSHS  117

Query  121  GRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAVQ  180
            ++V + +E +++P IG+R+I+ L+T DLL P++A E +   ++ASRL+QR++ +MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  NDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIECYkgraltrlalkltlCVFI  240
            +++I  NPA D++GA+++ K  HRPAL L +LP++L+RI  YKG+++T+LA+ L L VFI
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEI  300
            RSSELR+ARW+EID+  AMWTIP+ERE++PGVK S+RG+KMR+ HLVPLS+Q +A+L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  301  KAISGAHELVFPGDHRPIKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESGQW  360
            ++ +G + L+F G H P KP+SENT+N ALR MGYDTT +VCGHGFR+MACSAL+ESG W
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  SRDAVARQMSHQEHNGVRAAYIHKAEHLEERKLMLQWWADYLDANREEYVVPYEFKNI  418
            SRDAV RQMSHQE+NGVRAAYIHKAEHLEER+LMLQWWAD+LDANRE ++ P+E+ +I
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

161) Dd1591_3702 in NC_012912


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  418 bits (1572),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 247/418 (60%), Positives = 339/418 (82%), Gaps = 3/418 (0%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD   R+AKP +KAYKL+D+ G++LLV PNGS+ W L+YR+ GKE  +A+G YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDAQNTFEKVARDWHRNISQNRWSQTHA  120
            L+ AR KRDE R L+SEG++P E++   K    D Q +FE +AR WH   S+++W+Q+H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKV-VPDLQLSFEHIARRWH--ASNKQWAQSHS  117

Query  121  GRVWRDIERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAVQ  180
            ++V + +E +++P IG+R+I+ L+T DLL P++A E +   ++ASRL+QR++ +MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  NDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLAQIERYkgraltrlalkltlCVFI  240
            +++I  NPA D++GA+++ K  HRPAL L +LP++L++I  YKG+++T+LA+ L L VFI
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEI  300
            RSSELR+ARW+EID+  AMWTIP+ERE++PGVK S+RG+KMR+ HLVPLS+Q +A+L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  301  KAISGVHELIFPGDHRPTKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESGQW  360
            ++ +G + LIF G H P KP+SENT+N ALR MGYDTT +VCGHGFR+MACSAL+ESG W
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  SRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYLDANREEHVVPYEFKNI  418
            SRDAVERQMSHQERNGVRAAYIHKAEHLEER+LMLQWWAD+LDANRE  + P+E+ +I
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

162) SNSL254_A4836 in NC_011080


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  418 bits (1572),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 228/419 (55%), Positives = 326/419 (78%), Gaps = 2/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++AVMRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLEQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS Q +A+L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HDP K +SENTVN ALR MGYDT  DVCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEIKIIYITPYDFAKMNN  419
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +  +I+P+++AK+NN
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

163) intB in NC_014228


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  417 bits (1571),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 231/416 (56%), Positives = 333/416 (81%), Gaps = 2/416 (0%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   +I +AKP +K+YKL+DG+G++L + + GS+YWR++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VSLadarakrdeakkLIAQGSDPKAEKKGAQTESKGAPSFEQVAREWHASNKRWSEDHSN  120
            VSL++AR+KRDEA+KLI++G DP  +K++ +  +    SFE++AR WHASNK+W++ HS+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RILRSLEHYIFPHIGRLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            ++L+SLE  +FP IG  DI+TL T++LL P+++ +A    +IA RLQQR++++MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLTFVR  240
            +I+  NPA DM+GAL+TVK +H+PAL   RLPE+L+R++ Y+G+ +TQ+AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFKILQ  300
            SSELR+ARW E+D++NA+W IPA R P+ GVKFS+RG KM+T H+VPLS+Q V+++  LQ
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  GLSGECEVMFPHDHNPAKVMSESTVNNALRGMGYDTKTEVCGHGFRTMARGAMGESGLWN  360
              +GE  ++F   H+P K +SE+TVN+ALR MGYDT  +VCGHGFR+MA +A+ ESGLW+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDANREKYITPYDFAK  416
             DA+ERQ+SH ER+ VRAAYIH + HL+ER+LM+QWWAD+LDANRE++I+P+++AK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

164) intB in NC_013892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1565),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 235/423 (56%), Positives = 341/423 (81%), Gaps = 6/423 (1%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEVSSRGSKYWRMKYYRPTDKKEDRLAFGVYPT  60
            M L   +I +AKP +K+YKL+DG+G++L V + GS+YWR++Y      KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY--RILGKEKTLALGVYPE  58

Query  61   VSLadarakrdeakkLMAQGIDPKAEKKGTPTPAKVN-SFEQVARAWHASNKRWSDSHRQ  119
            VSL++AR+KRDEA+KL+++G+DP  +K++    + ++ SFE++AR WHASNK+W++SH +
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  120  KILRSLEQYIFPHIGARDITTLRTSQLLAPVKAIDEQDKHDIAQRLRQRITAIMRYAVQN  179
            K+L+SLE  +FP IG RDITTL T++LL PV+A + ++  +IA RL+QRI+A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  180  DILESNPANDMTGALTTAKSRHHPALPHECLPDFLNRLSAYRGRLLTKIAVELALLTFVR  239
            +I+  NPA DM+GALTT K +H+PAL    LP++L+R+++Y+G+ +T++AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  240  SSELRFARWQEIDLENSVWKIPATRQPIKGVRFSERGMKMKTDHIVPLSRQAVGLINALH  299
            SSELR+ARW EID++N++W IPA R+P+ GV+FS+RG KM+T H+VPLS+Q V+++  L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  300  ELSGNCDVMFPSDHNSAKVMSENTVNKALRAMGYDTQTEVCGHGFRTMARGAMGESGLWS  359
              +G+ +++F + H++ K +SENTVNKALR MGYDT  +VCGHGFR+MA +A+ ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  360  DDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDANREKPITPYDFAK---P  416
             DA+ERQ+SH ERN VRAAYIH + HL+ERRLM+QWWAD+LDANRE+ I+P+++AK   P
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

Query  417  LRD  419
            L++
Sbjct  419  LKQ  421

165) KPHS_05400 in NC_016845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1565),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 223/420 (54%), Positives = 326/420 (78%), Gaps = 2/420 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++ARTKRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLEQLK  300
            SSELR+ARW E+D+ +++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGKIVTPYEFAKIRKS  420
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+L +N  ++++P+E+AKI ++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

166) N559_4601 in NC_022082


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1565),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 223/420 (54%), Positives = 326/420 (78%), Gaps = 2/420 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++ARTKRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLEQLK  300
            SSELR+ARW E+D+ +++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGKIVTPYEFAKIRKS  420
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+L +N  ++++P+E+AKI ++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

167) SEEB0189_19950 in NC_021844


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1565),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 224/419 (54%), Positives = 328/419 (79%), Gaps = 2/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WH SNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  ++    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKLHS  419
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LDAN+ + IS+F+YAK+++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

168) SN31241_8570 in NC_021902


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 228/419 (55%), Positives = 326/419 (78%), Gaps = 2/419 (0%)

Query  5    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  64
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  65   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  124
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  125  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYAVQN  184
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++AVMRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  185  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  244
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  245  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLEQLK  304
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS Q +A+L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  305  QMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESGLWS  364
              +G++ L+F G HDP K +SENTVN ALR MGYDT  DVCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  365  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEIKIIYITPYDFAKMNN  423
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +  +I+P+++AK+NN
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

169) SSPA3984 in NC_011147


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 224/419 (54%), Positives = 328/419 (79%), Gaps = 2/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WH SNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  ++    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKLHS  419
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LDAN+ + IS+F+YAK+++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

170) int in NC_006511


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 224/419 (54%), Positives = 328/419 (79%), Gaps = 2/419 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WH SNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  ++    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKLHS  419
             DA+ERQ+SH ERN+VRAAYIH +EHL+ERRLM+QWWAD+LDAN+ + IS+F+YAK+++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

171) intA_4 in NC_022370


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  414 bits (1560),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 223/416 (54%), Positives = 324/416 (78%), Gaps = 2/416 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP +K+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKQAHAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++          +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRLLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKVRHYPALPSSRLPEFLSRLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SRLPE+LSR+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWNEFDFDKALWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMNLLGQLK  300
            SSELR+ARW+E+D+D+A+W +PA RE + GV++S RG KM+  H+VPLS+Q + +L++L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDRKLLFPGDHDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G+  L+F G HD+ K +SENTVN+ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYIDHNKIMYTTPFDFAK  416
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD++D N+  + +PF++AK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

172) ECO26_5435 in NC_013361


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  414 bits (1559),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 326/417 (79%), Gaps = 2/417 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPM  60
            M L   ++ +AKP +K+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RILRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            ++L+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFSEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR++E+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDAAKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADFLEANRNNSVTPYEFAKF  417
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWADFL+ANR+  ++P+E+AK+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

173) ENC_43890 in NC_021046


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  413 bits (1553),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 220/416 (53%), Positives = 324/416 (78%), Gaps = 2/416 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGEYTFETIGREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +     + +FE I+R WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK  300
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKKLLFPGDHDTTKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD  K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADYLDVNRDLHVTPYDFAN  416
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD NR+  ++P+++A+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

174) STBHUCCB_9400 in NC_016832


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  412 bits (1549),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 236/421 (57%), Positives = 321/421 (77%), Gaps = 8/421 (1%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTD K + AKP +K YKLTDG GMFL V P+GS+YW++ YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDY  120
            LS+AR +RDEAR+L+++G+DP  +K+A     K   D   SF  +A+ W +++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK----KVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  GDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRHAV  180
            +D V K LET VFP IG++D++ L+T DLL+PV+  EA    E+A R+QQ I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF  240
            Q  +IR NPA DM GA+   + +HRPAL+L  +P+LL++I+ YKG+ +T LA+ LNL++F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  HLVPL KQ + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSALI  360
            ++      + ++GLIFTG  D+ KP+SENT+NKALR MGYDT QD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLDAN +  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  D  421
             
Sbjct  413  A  413

175) TY21A_04490 in NC_021176


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  412 bits (1549),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 236/421 (57%), Positives = 321/421 (77%), Gaps = 8/421 (1%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTD K + AKP +K YKLTDG GMFL V P+GS+YW++ YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDY  120
            LS+AR +RDEAR+L+++G+DP  +K+A     K   D   SF  +A+ W +++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK----KVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  GDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRHAV  180
            +D V K LET VFP IG++D++ L+T DLL+PV+  EA    E+A R+QQ I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF  240
            Q  +IR NPA DM GA+   + +HRPAL+L  +P+LL++I+ YKG+ +T LA+ LNL++F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  HLVPL KQ + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSALI  360
            ++      + ++GLIFTG  D+ KP+SENT+NKALR MGYDT QD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLDAN +  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  D  421
             
Sbjct  413  A  413

176) t05065 in NC_004631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  412 bits (1549),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 236/421 (57%), Positives = 321/421 (77%), Gaps = 8/421 (1%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTD K + AKP +K YKLTDG GMFL V P+GS+YW++ YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDY  120
            LS+AR +RDEAR+L+++G+DP  +K+A     K   D   SF  +A+ W +++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK----KVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  GDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRHAV  180
            +D V K LET VFP IG++D++ L+T DLL+PV+  EA    E+A R+QQ I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF  240
            Q  +IR NPA DM GA+   + +HRPAL+L  +P+LL++I+ YKG+ +T LA+ LNL++F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHLVPLCKQAMKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  HLVPL KQ + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLACSALI  360
            ++      + ++GLIFTG  D+ KP+SENT+NKALR MGYDT QD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANSNDMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLDAN +  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  D  421
             
Sbjct  413  A  413

177) intB in NC_013892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  412 bits (1549),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 231/416 (56%), Positives = 335/416 (81%), Gaps = 2/416 (0%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWHMKYRRPTDKKEDRLAFGVYPI  60
            M L   +I +AKP +K+YKL+DG+G++L + + GS+YW+++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VSLadarakrdeakkLIAQGSDPKAEKRGTQLESKGAPSFEQVAREWHASNKRWSEDHSN  120
            VSL++AR+KRDEA+KLI++G DP  +KR+ ++ +    SFE++AR WHASNK+W++ HS+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RILRSLEHYIFPHIGKLDISTVRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            ++L+SLE  +FP IG+ DI+T+ T++LL P+++ +A    +IA RLQQR++++MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLTFVR  240
            +I+  NPA DM+GAL+TVK +H+PAL   RLPE+L+R++ Y+G+ +TQ+AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFKILQ  300
            SSELR+ARW E+D++NA+W IPA R P+ GVKFS+RG KM+T H+VPLS+Q V+++  LQ
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  GLSGECEVMFPHDHNPAKVMSESTVNNALRVMGYDTKTEVWGHGFRTMARGAMGESGLWN  360
              +GE  ++F   H+P K +SE+TVN+ALRVMGYDT  +V GHGFR+MA +A+ ESGLW+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERRLMVQWWADYLDANREKYITPYDFAK  416
             DA+ERQ+SH ER+ VRAAYIH + HL+ERRLM+QWWAD+LDANRE++I+P+++AK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

178) ECABU_c49370 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  411 bits (1546),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 223/357 (63%), Positives = 293/357 (83%), Gaps = 1/357 (0%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  120
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  121  VKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  180
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFIRS  240
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+ Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQIKQ  300
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVPLSKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  357
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGL
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

179) int in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  411 bits (1547),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 235/421 (56%), Positives = 323/421 (77%), Gaps = 8/421 (1%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTD K + AKP +K YKLTDG GMFL V P+GS+YW++ YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDY  120
            LS+AR +RDEAR+L+++G+DP  +K+A     K   D   SF  +A+ W +++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK----KVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  GDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRIQQYITAILRHAV  180
            +D V K LET VFP IG++D++ L+T DLL+PV+  EA    E+A R+QQ I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF  240
            Q  +IR NPA DM GA+   + +HRPAL+L  +P+LL++I+ YKG+ +T LA+ LNL++F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAMKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL KQ + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYNTKQDICGHGFRTLACSALI  360
            ++      + ++GLIFTG  D+ KP+SENT+NKALR MGY+T QD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDASRNGMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HLE+RRLMLQWWAD+LDA+R+  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  A  421
            A
Sbjct  413  A  413

180) W5S_1599 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  411 bits (1547),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 234/423 (56%), Positives = 326/423 (78%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKNAKPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFQGKQKVFSIGVYPAVS  60
            M+LTD+K++ AKP++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAAGIDPSAKKQADNKIVQERRNNTRAFKTVAKSWFATKTTWSEDY  120
            L++AR +RDEA+KL++ G+DP  +K+A +K+V + +    +F  +A+ W A++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL+P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKHQTEHRPAIELEEIPTLLERIEAYKGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI +YKG++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FVRSSELRFARWSEIDFKSALWVIPEERETIEGIKHSGRGAKMRRKHYVPLCNQALAILE  300
            F+RSSELR+ARWSEID+ +A+W IP ERE + G+K S RG+KMR  H VPL +Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDAN +  + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FGQ  423
            +++
Sbjct  412  YAK  414

181) STY4821 in NC_003198


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1544),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

182) TY21A_22985 in NC_021176


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1544),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

183) t4518 in NC_004631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1544),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK  300
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARV  417
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD  +   I+P+EYA++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

184) c5371 in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1542),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 222/357 (63%), Positives = 293/357 (83%), Gaps = 1/357 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  146
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  147  VKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  206
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  207  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFIRS  266
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+ Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  267  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQIKQ  326
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVP+SKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  327  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGL
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

185) i14_4891 in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1542),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 222/357 (63%), Positives = 293/357 (83%), Gaps = 1/357 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  146
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  147  VKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  206
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  207  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFIRS  266
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+ Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  267  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQIKQ  326
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVP+SKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  327  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGL
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

186) i02_4891 in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  410 bits (1542),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 222/357 (63%), Positives = 293/357 (83%), Gaps = 1/357 (0%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD+K+R+AKP +K Y L DG GM LLV P GS+YWR+R+R+ GK+  +A+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR  146
            L++AR KR+EARKL++ G+DP E+KRA K     ++ +FE +AR W  +N++W++ H+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWHASNKQWAQSHSDK  119

Query  147  VKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG  206
            V KSLE ++FP IG R+I+ L T DLLIP++A E     E+ASRLQQR +A+MRYAVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  207  LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFIRS  266
            +I YNPA +MAGA+++ +RQHRPAL+L R+PELL +I+ Y G+P+T+ A  L LL+FIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  267  SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQIKQ  326
            SELR+ARWSEID++ +MWTIP+EREP+PGVK S+RGSKMRTPHLVP+SKQ +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  327  FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              GE+ LIF G HDPRKP+SENTVN ALRVMGYDT  +VCGHGFR+MACS+LIESGL
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

187) W5S_0472 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  409 bits (1539),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 219/334 (66%), Positives = 283/334 (85%), Gaps = 0/334 (0%)

Query  32   TDKIEQSEALTFRDVAIEWHATNKKWSEEHSRRVLKSLEDNLFSAIGKRNIAELKTRDLL  91
            + K+     L+F ++A  WHA+NK+W++ HS +VLKSLE ++F+ IG+R+I+ L+T DLL
Sbjct  87   AKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLL  146

Query  92   APIKVVEQSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALEL  151
             P++  E     E+ASRLQQR +A+MRYAVQSG+I YNPA +MAGA+++ +RQHRPAL+L
Sbjct  147  IPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDL  206

Query  152  KHTPKLLQRIDNYTGRPLTRLAAELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPI  211
             + P LL RI++Y G+P+T+LA  L LL+FIRSSELR+ARWSEID++ +MWTIP+EREP+
Sbjct  207  SRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPL  266

Query  212  EGVKHSHRGSKMRTPHLVPLSRQALVILKQIQQFSGDHELIFIGDHDPRKPMSENTVNKA  271
             GVK SHRGSKMRTPHLVPLS+Q + IL ++Q  +G++ LIF G HDPRKP+SENTVNKA
Sbjct  267  PGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKA  326

Query  272  LRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLD  331
            LRVMGYDT  +VCGHGFR+MACS+LIESGLWSRDAVERQMSH ERN+VRAAYIHKAEHL+
Sbjct  327  LRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLE  386

Query  332  ERKLMLQWWADFLDANREKAVSAFDFGKVSNQLK  365
            ER+LMLQWWADFLDANRE+ +S+F+++K++N LK
Sbjct  387  ERRLMLQWWADFLDANRERFISPFEYAKINNPLK  420

188) A79E_1796 in NC_018522


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  409 bits (1540),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 235/421 (56%), Positives = 322/421 (77%), Gaps = 8/421 (1%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTD K + AKP +K YKLTDG GMFL V P+GS+YW++ YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKTKWSDDY  120
            LS+AR +RDEAR+L+++G+DP  +K+A     K   D   SF  +A+ W +++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK----KVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  GDAVWKRLETYVFPAIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRTQQYITAILRHAV  180
            +D V K LET VFP IG++D++ L+T DLL+PV+  EA    E+A R QQ I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLMIF  240
            Q  +IR NPA DM GA+   + +HRPAL+L  +P+LL++I+ YKG+ +T LA+ LNL++F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAIRILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL KQ + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYNTKQDICGHGFRTLACSALI  360
            ++      + ++GLIFTG  D+ KP+SENT+NKALR MGY+T QD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDASRNGMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HLE+RRLMLQWWAD+LDA+R+  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  A  421
            A
Sbjct  413  A  413

189) Pecwa_1586 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  409 bits (1539),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 232/423 (55%), Positives = 325/423 (77%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHPNGSKYWQLGYRFEGKQKVFSIGVYPAVS  60
            M+LTD+K++ AKP++K  KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAAGIDPSAKKQADNKIVQERRNNTRAFKTVAKSWFTTKTTWSEDY  120
            L++AR +RDEA+KL++ G+DP  +K+A +K+V + +    +F  +A+ W +++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL+P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEAYKGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI +YKG++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FVRSSELRFARWSEIDFKSALWVIPEQREAIKGIKHSGRGAKMRRKHYVPLCHQALAILE  300
            F+RSSELR+ARWSEID+ +A+W IP +RE++ G+K S RG+KMR  H VPL  Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDAN +  + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FAQ  423
            +A+
Sbjct  412  YAK  414

190) Y11_15011 in NC_017564


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  409 bits (1540),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 213/411 (52%), Positives = 323/411 (79%), Gaps = 1/411 (0%)

Query  1    MSLNGSKIRNLKPSAKPFKVSDSHGLYLLVNPSGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L ++KIR  KP+ K++K++D+ G++LLV+P+GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLVQNINPAQQRSAERTTSSPEKTFKHVALEWHKSNRTWSENHAARL  120
            L++AR +RD  RKL+ + ++P +Q+ A +  +  + +F H+A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEKKGSLEVAARTRQHMCSIMRHAVHQEL  180
            L S++ H+FP+IG+  ++ L+  +++  +++ E K   E+A+R +Q++ ++MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDNNPAANLDGIIAPPVKRHYPALPLEQLSELLTRIEDYQQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L +L+ELL+RI  Y+ G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSHQSITILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE++PGV++S RG+KMRTPH+VPLS Q ++IL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQELVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQ  360
             +G++ L+F G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLNACREAYIPPY  411
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+L+A RE +I+P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

191) A464_4477 in NC_021870


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  409 bits (1538),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 242/416 (59%), Positives = 331/416 (80%), Gaps = 3/416 (0%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYRFVNKEKKLALGPYPLLT  60
            MALTD  I  AKP +K+YKL+D+ G++LLV+PNGS+ W ++YR++ KEK LALG YP ++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARRMREEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVTSNVNWSAEHKKRV  120
            L++AR  R+EA+ L+  G+DP  +++A ++    + +FE +AR W +SN +W+  H  +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRYFELYVFPTNGSCDITKMKVKNLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGI  180
            L+ +E  VFP  G+ DIT ++  +LL+P++  E     ++ASRLQQR + VMRYAVQ+GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERIDDYKGRqltqlavklalllFIRSS  240
            I  NPA D++GA++T K +H+PALDL+ +P++L RI+ YKG+ +TQLAV L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWDEIDLRNAMWTIPAEREPIPGVKYSVRGAKMHSPHLVPLSRQAIELLHEVRQH  300
            ELR+ARW EID+ NAMWTIPAEREP+PGVK+S RG+KM++PHLVPLS+Q + +L E+  +
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL--Q  298

Query  301  CRPGTE-LVFPGDHNYRKPMSENTINKALRLMGYDTQKDVCGHGFRTMACSALVESGLWS  359
             ++G + L+F G H+ RKP+SENT+NKALR+MGYDT +DVCGHGFR+MACSAL+ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  360  SDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
             DAVERQMSHQER+ VRAAYIHKA+HLEERR M+QWWAD+LDANR R + P+ + K
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

192) Pecwa_0447 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1536),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 242/417 (59%), Positives = 338/417 (82%), Gaps = 3/417 (0%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD   R+AKP +KAYKL+D+ G++LLV PNGS+ W L+YR+ GKE  +A+G YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaLNTFAKVAQDWHRNISQNRWSETHA  120
            L+ AR KRDE R L+ EG++P E++   K  ++  L +F  +A+ WH   S+++W+++H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWH--ASNKQWAQSHS  117

Query  121  GRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAVQ  180
            ++V + +E +++P IG+R+I+ L+T DLL P++A E +   ++ASRL+QR++ +MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  NDLIERNPAQDLSGAIAAPKATHRPALKLNKLPDFLARIERHKGrtltrlalkltlCVFI  240
            +++I  NPA D++GA+++ K  HRPAL L++LP++L+RI   KG+ +T+LA+ L L VFI
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEI  300
            RSSELR+ARW+EID+  AMWTIPAERE++PGVK S+RG+KMR+ HLVPLS+Q +A+L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  301  KAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTIEVCGHGFRTMACSALVESGQW  360
            ++ +G + LIF G + P KP+SENTVN+ALR MGYDTT +VCGHGFR+MACSAL+ESG W
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  SRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDANREEYVVPYEFKR  417
            SRDAVERQMSHQERNGVRAAYIHKAEHL+ERRLMLQWWAD+LDANRE ++ P+E+ +
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

193) Dd703_2459 in NC_012880


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1536),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 232/423 (55%), Positives = 325/423 (77%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKNAKSSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFEGKQKVFSIGVYPAVS  60
            M+LTD+K++ AK+++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRAFKTVAKSWFATKTTWSEDY  120
            L++AR +RDEA+KL++ G+DP  +K+A +K + + +    +F  +A+ W A++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDISELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL+P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIESYKGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI SYKG++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FVRSSELRFARWSEIDFKSALWVIPEQREAIEGIKHSGRGAKMRRKHYVPLCDQALAILE  300
            F+RSSELR+ARWSEID+ +A+W IP +RE++ G+K S RG+KMR  H VPL  Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDEGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDAN +  + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FSQ  423
            +++
Sbjct  412  YAK  414

194) ETAE_3092 in NC_013508


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 222/417 (54%), Positives = 323/417 (78%), Gaps = 2/417 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHDSNKRWSEDHRS  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR WH SNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSYLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T+ LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLDAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLDQLK  300
            SSELR+ARW E+D+D+++W IPA RE + GV++S RG KM+  H+VPLS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDSCHKHQIAPYEFARI  417
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+LD+ + + I+P+E+A+I
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

195) Dd586_2635 in NC_013592


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 217/419 (52%), Positives = 328/419 (79%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRNLKPSVKPFKVSDSHGLYLLVNPGGSRLWYLKYRINKKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLVQNINPAQQRSAERATALPEETFKSVALSWHKSNKAWSENHAVRL  120
            L++AR +RD  RKL+ + ++P +Q+ A +  +  + +F  +A  WH SNK W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLPVSELKPRHFIDllkgiekkglleVAARSRQHMCNIMRHAVHQEL  180
            L S++ H+FP+IG+  ++ L+  +++  +++ E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDNNPAANLDGIIAPPVKRHYPALPLERLSELLTRIGDYKQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L RL+ELL+RIG YK G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFAHWSEIDFKNNIWTIPANREAIPGVRYSGRGAKMRTPHIVPLSSQSITILKQIRE  300
            SELR+A+WSEID+ N +WTIPA+RE++PGV++S RG+KMRTPH+VPLS Q ++IL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQELVFPGDHNPYKPMCENTINKALRLMGYDTKSDICGHGFRAMACSALMESGLWAQ  360
             +G++ L+F G H+P KP+ ENT+NKALR+MGYDT  D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQQHET  419
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD+NRE +++P+ YA+ ++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

196) intB in NC_004547


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1534),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 233/423 (56%), Positives = 322/423 (77%), Gaps = 9/423 (2%)

Query  1    MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVS  60
            M+LTD+K++ AK+ +K YKLTDG GM LLVHPNGS+YWRL YR+  K++ LALGVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRAFKTVAKSWFSTKTTWSEDY  120
            L++AR +RDEA+KL++ G+DP  +K+A +K + + +    +F  +A+ W +++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDIAELDTGDLLAPIKKIEKLGYLEIAMRVKQYTTAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYQGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI +Y+G++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FVRSSELRFARWSEIDFKSALWVIPEQRQAIEGIKHSGRGAKMRRKHYVPLCDQALAILE  300
            F+RSSELR+ARWSEID+ +A+W IP +R+++ G+K S RG+KMR  H VPL  Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANRNGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDANR+  + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FAQ  423
            +A+
Sbjct  412  YAK  414

197) intB in NC_014228


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  408 bits (1535),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 229/416 (56%), Positives = 331/416 (80%), Gaps = 2/416 (0%)

Query  1    MKLNARQIEAAEPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   +I AA P +K+YKL+DG+G++L + + GS+YWR++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VSLadarakrdeakkLIAQGADPKAEKKGAQAESKGAPSFEQVAREWHASNKRWSEDHSN  120
            VSL++AR+KRDEA+KLI++G DP  +K++ +  +    SFE++AR WHASNK+W++ HS+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RILRSLEHYIFPHIGKLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYAVQN  180
            ++L+SLE  +FP IG+ DI+TL T++LL P+++ +A    +IA RLQQR++++MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DILESNPANDMSGALSTVKAKHHPALPHERLPEFLTHLSHYRGRLITQIAVELTLLTFVR  240
            +I+  NPA DM+GAL+TVK +H+PAL   RLPE+L++++ Y+G+ +TQ+AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWEELDLENAVWKIPATRKPIEGVKCSERGMKMKTGHIVPLSRQAVSLFKTLQ  300
            SSELR+ARW E+D++NA+W IPA R P+ GVK S+RG KM+T H+VPLS+Q V+++  LQ
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  DLSGECEVMFPHNHNLAKVMSESTVNNALRGMGYDTKTDVCGHGFRTMARGAMGESGLWN  360
              +GE  ++F   H+  K +SE+TVN+ALR MGYDT  DVCGHGFR+MA +A+ ESGLW+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDANREKYITPYDFAK  416
             DA+ERQ+SH ER+ VRAAYIH + HL+ER+LM+QWWAD+LDANRE++I+P+++AK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

198) intB in NC_004547


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  407 bits (1531),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 233/423 (56%), Positives = 323/423 (77%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHTNGSKYWQLGYRFEGKQKVFSIGVYPAVS  60
            M+LTD+K++ AKP++K  KLTDG G++LLVH NGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARQRRDEAKKLLAAGVDPSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSEDY  120
            L++AR +RDEA+KL++ GVDP  +KRA +K V + +    +F  +A+ W A++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL+P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYKGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI +YKG++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FIRSSELRFARWSEIDFKSGLWVIPEQREAIKGIKHSDRGAKMRRKHYVPLCEQALVILG  300
            FIRSSELR+ARWSEID+ +++W IP +RE++ G+K S+RG+KMR  H VPL  Q + IL+
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANGSGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDAN    + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FAQ  423
            +A+
Sbjct  412  YAK  414

199) Pecwa_1766 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  407 bits (1531),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 230/423 (55%), Positives = 325/423 (77%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHPNGSKYWQLGYRFEGKQKVFSIGVYPAVS  60
            M+LTD+K++ AKP++K  KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDDAKKLLAAGIDPSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSEDY  120
            L++AR +RD+A+KL++ G+DP  +KRA +K V + +    +F  +A+ W A++  W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQL---SFEHIARRWHASNKQWAQSH  116

Query  121  QRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV  180
               V   LET +FP IGN+DI+ L+T DLL+P++  E     EIA R++Q  +A+MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIDGYQGRSRLTQLAIKLNLLI  240
            Q  +IR+NPA D+ GA+   + +HRPA++L  +P LL RI++Y+G++ +TQLA+ LNLL+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP-VTQLAVMLNLLV  235

Query  241  FVRSSELRFARWSEIDFKSALWVIPEQREAIKGIKHSGRGAKMHRKHYVPLCDQALAILE  300
            F+RSSELR+ARWSEID+ +A+W IP +RE++ G+K S RG+KM+  H VPL  Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL  360
            EL+  +    G++G+I+TG  D+ KP+SENT+NKALR MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANSNGMVRPFE  420
            IESG+W+ D VE QMSH E+N VRAAY HKA HLE+RRLMLQWWADFLDAN +  + PFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FSN  423
            +++
Sbjct  412  YAK  414

200) W5S_0459 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  405 bits (1523),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 243/418 (59%), Positives = 339/418 (82%), Gaps = 3/418 (0%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLVS  60
            MALTD   R+AKP +KAYKL+D+ G++LLV PNGS+ W L+YR+ GKE  +A+G YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaLNTFEKVAQDWHRNISQNRWSETHA  120
            L+ AR KRDE R L+ EG++P E++   K  ++  L +FE +A+ WH   S+++W+++H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL-SFEHIARRWH--ASNKQWAQSHS  117

Query  121  GRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKVVEQNGHLDLASRLRQRVTDIMRYAVQ  180
            ++V + +E +++P IG+R+I+ L+T DLL P++  E +   ++ASRL+QR++ +MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  NDLIERNPAQDLSGAIAAPKATHRPALKLNTLPDFLARIERHkgraltrlalkltlCVFI  240
            +++I  NPA D++GA+++ K  HRPAL L+ LP++L+RI   KG+++T+LA+ L L VFI
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEI  300
            RSSELR+ARW+EID+  AMWTIPAERE++PGVK S+RG+KMR+ HLVPLS+Q +A+L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  301  KAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTTEVCGHGFRTMACSALVESGQW  360
            ++ +G + LIF G + P KP+SENTVN+ALR MGYDTT +VCGHGFR+MACSAL+ESG W
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  SRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDANREEYVVPYEFKNV  418
            SRDAVERQMSHQERNGVRAAYIHKAEHL+ERRLMLQWWAD+LDANRE ++ P+E+ ++
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

201) intB in NC_014228


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  403 bits (1515),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 224/418 (54%), Positives = 331/418 (80%), Gaps = 2/418 (0%)

Query  1    MKLNARQIETAKPKEKNYKLADGGGLYLEVTSRGSKYWRMKYRRPTDKKEDRLAFGVYPT  60
            M L   +I +AKP +K YKL+DG+G++L V + GS+YWR++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VSladarakrdeakkllaQGINPKAEQKEAQSESEGVFTFEHIAREWRASNKRWSEDHSG  120
            VSL++AR+KRDEA+KL+++G++P  +++  +  ++  ++FEHIAR W+ASNK+W++ HS+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RIMRSLEQYIFPHIGALDVRTLRTSHLLTPIKSVDINGKHDVAQRLQQRVTAIMRYAVQN  180
            ++++SLE  +FP IG  D+ TL T++LL P+++ + +   ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GILEYSPANDMAGALTIVKSKHHAALPHECLPEFLTRLSCYRGRLITRIAVELTLLTFVR  240
            GI+ Y+PA DMAGALT VK +H++AL    LPE+L+R++ Y+G+ +T++AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSEMRFARWEEIDLERAVWCVPATRKLIEGVKHSQRGMKMKTEHIVPLSRQAVLLIEKLH  300
            SSE+R+ARW EID++ A+W +PA R  + GVK S+RG KM+T H+VPLS+Q V ++  L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  GLSGDSEVMFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGLRTMARGAMGESGLWS  360
              +G++ ++F G HDP+K +SENTVN+ALR MGYDT  +VCGHG+R+MA +A+ ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDANREKHITPYDFAKTS  418
             DA+ERQ+SH ERN VRAAYIH + HL+ERRLM+QWWAD+LDANRE+ I+P+++AK +
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

202) Dd703_3034 in NC_012880


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  403 bits (1516),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 330/417 (80%), Gaps = 1/417 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSHGLYLTVSASGAKLWYFRYRLGGKESRLAFGPYPQTTLA  61
            LTD+K+R+AKP  K+YKLTD+ G++L V ++G++ W +RYR+ GKE  LA+G YP+ +L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   EAREKRDVARKLLASGISPSQLRKANNPAVEESRTFQYVAQAWHTSSLKLWSEAHADKIL  121
            EAR KRD ARKL++ G+ P + ++A++   +   +F+ +A+ WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPTIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI+ ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL ++ +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQALS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTVNKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENTVNKALRV+GYDT  ++CGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYARSHSA  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+ +++
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

203) ECO111_2624 in NC_013364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  402 bits (1511),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 241/426 (57%), Positives = 328/426 (77%), Gaps = 16/426 (3%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ A+P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAQGVDP----NAKKLADEKALQEKRDKTCSFRVVARSWFATKTKW  116
            L++AR +RDEA+KL+++GVDP     AKK+  +  L        SF  +AR W A++ +W
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--------SFEHIARRWHASNKQW  112

Query  117  SEDYADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPIKNAETLGYLEIAMRIKQYITAIL  176
            ++  +D V K LET VFP IG+ +++ L+T DLL+P++ AE+    EIA R++Q I+A++
Sbjct  113  AQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVM  172

Query  177  RHAVQQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLN  236
            R AVQ  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LN
Sbjct  173  RYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLN  232

Query  237  LLIFIRSSELRYARWSEIDFNSKLWVIPEKREAIERVKYSTRGAKMKRQHFVPLCRQALK  296
            LL+FIRSSELRYARWSEID+++ +W IP  RE++  VK+S RG+KM+  H+VPL +Q + 
Sbjct  233  LLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVA  292

Query  297  ILKEIRQLTYEEGNEAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLAC  356
            IL E++      + E GLIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++AC
Sbjct  293  ILAELQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMAC  348

Query  357  SALIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDANRDGMVR  416
            SALIESGLWS DAVE QMSH+E N+VRAAY HKA HLE+RRLMLQWWAD+LDANR+  + 
Sbjct  349  SALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFIS  408

Query  417  PFEFAQ  422
            PFE+A+
Sbjct  409  PFEYAK  414

204) SeAg_B2068 in NC_011149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  402 bits (1512),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 238/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ A+P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAQGIDPNAKKQADEKALQEKRDKTRSFRVVARSWFATKTKWSEDY  120
            L++AR +RDEA+KL+++G+DP  +K+A  K + + +    SF  +AR W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+ +++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCQQAITILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q ++IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNDAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++      + + GLIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDANRDEMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLDANR+  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

205) E2348C_2119 in NC_011601


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  401 bits (1510),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 238/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNARPAEKAVKLTDGFGLYLLLHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ A+P++KA KLTDG G++LL+HPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKKLLAQGIDPNAKKQADEKALQEKRDKTRSFRVVARSWFATKTKWSEDY  120
            L++AR +RDEA+KL+++G+DP  +K+A  K + + +    SF  +AR W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+ +++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRYARWSEIDFNSKLWVIPEKREVIERVKYSTRGAKMKRQHFVPLCRQALKILKE  300
            IRSSELRYARWSEID+++ +W IP  RE +  VK+S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNDAGLIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++      + + GLIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTW----AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSKDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDANRDGMVRPFEF  420
            ESGLWS+DAVE QMSH+E N+VRAAY HKA HLE+RRLMLQWWAD+LDANR+  + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

206) SG1638 in NC_007712


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  401 bits (1509),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 227/416 (55%), Positives = 328/416 (79%), Gaps = 2/416 (0%)

Query  1    MKLNPRQVQTAKAKEKSYKLSDGGGMYLEVTPRGSKYWRMKYHRPSDRKEDKLSFGVYPA  60
            M L   ++++AK+ +K+YKL+DG+GM+L V P GS+YWR++Y+  +  KE  L++GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   ITlaearakrdeakkllakGLDPKKVQKKEHAENNGEFTFESIARKWHSNNRRWENVTRN  120
            ++L+EAR+KRDEA+KL++ G+DP   ++      + +++FE IAR+WH++N++W +   +
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  LILNSLEKYVFPIIGKNDIRQLKTRHLLAVVRAVEENGKHEVAQRIQQRITSIMRYAVQN  180
             +L+SLE  VFP+IG+ DI  L+T +LL  VRA E +   E+A R+QQRI+++MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  EIIETNPALDMAGALIPPKSVHHPALAPIMLPQFFARLTSYKGRKITRIAVELNLLTFVR  240
             II  NPALDMAGAL   K  H+PAL    LP++++R+ SYKG+ +T++AV LNLL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWKEIDFEHALWEIPAKREPIAGVRYSERGMKMKSSHLVPLSKQAIELLKQLK  300
            SSELR+ARW EID+++A+W IPA REP++GV++S+RG KM+++HLVPLSKQ + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  VQRGDEAHIFPGDHDIKGVMSENTVNKALRVMGYDTKTEICGHGFRTMARGAMGESGLWA  360
               G+++ IF G HD +  +SENTVNKALRVMGYDT  ++CGHGFR+MA +A+ ESGLW+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDVIELQMSHIERNGVKAAYLHTTKHLEERRLMMQWWADYLDANREHYISPYDFAK  416
             D +E QMSH ERNGV+AAY+H + HLEERRLM+QWWAD+LDANRE++ISP+++AK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

207) Dd586_1478 in NC_013592


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  400 bits (1506),  Expect = 5e-113, Method: Compositional matrix adjust.
 Identities = 221/417 (53%), Positives = 327/417 (79%), Gaps = 1/417 (0%)

Query  1    MSINDSKIRNLKPSTKPYKVSDSHGLYLLINPGGSRLWYLKYRINRKESRLGLGTYPDVS  60
            M++ D+KIR  KP+ K+YK++D+ G++LL++P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDSIRKLLAQNINPAHQQAAEKAPRSPEKSFRDVALDWHKSNRTWSESHATRL  120
            L++AR +RD  RKL+++ ++P +Q+ A K     + SF ++A  WH SN+ W++SH+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHLFPVIGHLPVTELKPRHFISLLRGIEKKGLLEVAARTRQHLCNIMRHAVHQEL  180
            L S++ H+FP IG+  +T L+  +++  +R+ E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAANLDGIIASPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G +++  ++H PAL L +LPELL+RI  Y+ G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNHIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQAIAILRQIQE  300
            SELR+ARWSEID+ N +WTIPA R ++PGV++S RG+KMRTPH+VPLS+Q +AIL ++Q 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESSLWAQ  360
             +G++ LIF GAH+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ES+LW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMNRENYVAPYVYAQVT  417
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD NRE +++P+ YA++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

208) CFSAN002050_16945 in NC_021818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  400 bits (1505),  Expect = 7e-113, Method: Compositional matrix adjust.
 Identities = 225/419 (54%), Positives = 325/419 (78%), Gaps = 1/419 (0%)

Query  1    MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVS  60
            M+L+DAKIR+ KP+DK++KLTD+ G++LLV+P GSR W L+YR+  KE  +ALG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKKWSADYAERI  120
            LS+AR +RD  RKL+++ ++P +Q+ + K  +  +  FE +A  WH +NK+W+   ++++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMKNHIFPAIGHLPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGL  180
            L S+  H+FP IG+  +T L+T ++   ++  E K + E+ASR +Q++  +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  TESNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRS  240
               NPA ++ G  +   ++H PAL L RLPEL+ RIG Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSRQAIAILKQIKE  300
            SELR+ARWSEID+ N +WTIPA RE +  V+FS RG+KMRTPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRTMACSALVESELWSR  360
             +G+  L+F G H+P KP+SENT+N+ALR+MGYDT  DVCGHGFR+MACSAL+ES LWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYARRHKA  419
            DAVERQMSHQERN+VRAAYIH+AEHL+ R+ M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

209) SPAB_01138 in NC_010102


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  399 bits (1501),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 226/419 (54%), Positives = 324/419 (78%), Gaps = 1/419 (0%)

Query  1    MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVS  60
            M+L+DAKIR+ KP+DK++KLTD+ G++LLV+P GSR W L+YR+  KE  +ALG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQRDGIRKLLAQNINPAQQRMTEKAAASPEKCFEAVAVAWHKTNKKWSADYAERI  120
            LS+AR +RD  RKL+++ ++P +Q+ + K  +  +  FE +A  WH +NK+W+   ++++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMKNHIFPAIGHMPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGL  180
            L S+  H+FP IG+  +T L+T ++   ++  E K + E+ASR +Q++  +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  TENNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRS  240
               NPA ++ G  +   ++H PAL L RLPEL+ RIG Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRHKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSWQSIAILKQIQE  300
            SELR+ARWSEID+ + +WTIPA RE +  V+FS RG+KMRTPH+VPLS Q +AIL ++Q 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKADVCGHGFRAMACSALVESELWSR  360
             +G+  L+F G H+P KP+SENT+N+ALR+MGYDT  DVCGHGFRAMACSAL+ES LWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHRAEHLDARKAMMQWWSDYLDVSREGYVAPYIYARRHKA  419
            DAVERQMSHQERN+VRAAYIH+AEHL+ R+ M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

210) SG1996 in NC_011274


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  398 bits (1498),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 238/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  23   MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  82
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  83   LADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  142
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  143  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  202
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  203  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  262
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  263  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  322
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  323  LRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  382
            L+  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  383  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  442
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  443  AQ  444
            A+
Sbjct  413  AK  414

211) SEN1970 in NC_011294


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  397 bits (1493),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 237/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKRLLTQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  120
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

212) SPUCDC_0925 in NC_022221


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  397 bits (1493),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 237/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  120
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

213) SPUL_0925 in NC_016831


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  397 bits (1493),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 237/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  120
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

214) I137_04205 in NC_021984


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  397 bits (1493),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 237/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  19   MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  78
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  79   LADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  138
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  139  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  198
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  199  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  258
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  259  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  318
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  319  IRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  378
            ++  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  379  ESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  438
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  439  AQ  440
            A+
Sbjct  413  AK  414

215) SeD_A2305 in NC_011205


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  396 bits (1489),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 237/422 (57%), Positives = 330/422 (79%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVS  60
            M+LTD+K++ ++P++KA KLTDG G++LLVHPNGS+YW+L YR+ GK+K +++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQRRDEAKRLLAQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDY  120
            L++AR +RDEA++L+++G+DP  +K+A  KV+ + +    SF  +A+ W A++ +W++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAK-KVVPDLQ---LSFEHIARRWHASNKQWAQSH  116

Query  121  ADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAV  180
            +D V K LET VFP IG+R+++ L+T DLL+PV+ AE+    EIA R++Q I+A++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKLMRHNPAYDMEGAVQKPETEHRPAleleeipllleRIDAYKGRGLTTLAIKLNLLIF  240
            Q  ++R NPA DM GA+     +HRPAL+L  +P LL RI++YKG+ +T LA+ LNLL+F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKE  300
            IRSSELR+ARWSEID+ + +W IP +RE++  VK S RG+KM+  H+VPL +Q + IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  IRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALI  360
            ++  + E+G    LIFTG  D+ KP+SENT+NKALR MGYDTTQD+CGHGFR++ACSALI
Sbjct  297  LQTWAGENG----LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDAVELQMSHKESNSVRAAYPHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEF  420
            ESGLWS DAVE QMSH+E N+VRAAY HKA HL++RRLMLQWWADFLD NR   + PFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

216) KPK_1811 in NC_011283


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  396 bits (1488),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 224/412 (55%), Positives = 324/412 (79%), Gaps = 1/412 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYILVKPGGSRHWYLKYRINGKESRLGLGAYPNVS  60
            M+LTDAKIR+ KP+DK++K++D+ G+++LV P GSR W L+YRI GKE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LTDARQQRDDIRKLLAQKINPAQQRLTEKAARSPEKAFKAVALNWHKSNKTWSEDHANRV  120
            L++AR +RD+ RKL+++ ++P +Q+ + K     + +F  +A  WH SNK W++ H+++V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LGRMNNHIFPIIGHLTVTELKVQHFINLLKGVENKGLLEIASRTRQYISSIMRHALHQGL  180
            L  ++ H+FP+IG+  +T L+  +++  +++ E K + EIASR +Q IS++MR A++ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAADLKGVTVPPIKRHYPAlplerlpellkrIDDYKQGRELTQLAIMLSLHVFIRS  240
            I  NPA D+ G      ++H PAL L RLPELL RI+ YK G+ +TQLA+ML+L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWPEINFRNRLWTIPATRETIPNVRNSGRGAKMRAQHIVPLSQQAIDILKQIRE  300
            SELR+ARW+EI++ N +WTIPA RE +P V+ S RG+KMR+ H+VPLS+Q + IL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGDQVLIFPSIRDPYKPMSENTINKALRLMDYDTKEDVCGHGFRAMACSALIESGLWSE  360
             +G++ LIF + +DP KP+SENT+NKALR+M+YDT +DVCGHGFRAMACSALIESGLWS 
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAIERQMSHQERNSVRAAYIHKAEHLEARKAMMQWWSDYIDECREKYVPPYN  412
            DA+ERQMSHQERN+VRAAYIHKAEHLE R+ M+QWW+D++D  RE++++P++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

217) A79E_4509 in NC_018522


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 241/416 (58%), Positives = 329/416 (80%), Gaps = 3/416 (0%)

Query  1    MALTDLAIRHARPLGKAYRLSDCHGLYIQVNPSGSKLWYLKFRFGNKENRMALGPYPLIS  60
            MALTD  IR A+P +KAY+L+D  G+++ V+P+GS+ W L++R+  KE+ +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LALAREKQADIRRLILEGINPAekrreekrggePLYTFESVAREWVSSNVNWSAEHKKRV  120
            L+ AR K+ + R+LI EG++P E++R  K   +   +FE +AR W +SN +W+  H  +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRYFELYVFPTNGSWDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGI  180
            L+ +E  VFP  G++DIT ++  DLL+P++  E     ++ASRLQQR + VMRYAVQ+GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIRSS  240
            I  NPA D++GA++T K +H+PALDL+ +P++L R++ +KG+ +TQLAV L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWDEIDLHNAMWTIPAEREPIPGVKYSARGAKMRSPHLVPLSHQAIELLREVRQH  300
            ELR+ARW EID++NAMWTIPAEREP+PGVK+S RG+KMR+PHLVPLS Q + +L E+  +
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL--Q  298

Query  301  CRPGTE-LVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWS  359
             ++G + L+F G H+ RKP+SENT+NKALRVMGYDT +DVCGHGFR+MACSAL+ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  360  SDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
             DAVERQMSHQER+ VRAAYIHKA+HLEERR M+QWWAD+LDANR R + P+ + K
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

218) int in NC_012731


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  395 bits (1487),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 241/416 (58%), Positives = 329/416 (80%), Gaps = 3/416 (0%)

Query  1    MALTDLAIRHARPLGKAYRLSDCHGLYIQVNPSGSKLWYLKFRFGNKENRMALGPYPLIS  60
            MALTD  IR A+P +KAY+L+D  G+++ V+P+GS+ W L++R+  KE+ +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LALAREKQADIRRLILEGINPAekrreekrggePLYTFESVAREWVSSNVNWSAEHKKRV  120
            L+ AR K+ + R+LI EG++P E++R  K   +   +FE +AR W +SN +W+  H  +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRYFELYVFPTNGSWDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGI  180
            L+ +E  VFP  G++DIT ++  DLL+P++  E     ++ASRLQQR + VMRYAVQ+GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIRSS  240
            I  NPA D++GA++T K +H+PALDL+ +P++L R++ +KG+ +TQLAV L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWDEIDLHNAMWTIPAEREPIPGVKYSARGAKMRSPHLVPLSHQAIELLREVRQH  300
            ELR+ARW EID++NAMWTIPAEREP+PGVK+S RG+KMR+PHLVPLS Q + +L E+  +
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL--Q  298

Query  301  CRPGTE-LVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWS  359
             ++G + L+F G H+ RKP+SENT+NKALRVMGYDT +DVCGHGFR+MACSAL+ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  360  SDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  415
             DAVERQMSHQER+ VRAAYIHKA+HLEERR M+QWWAD+LDANR R + P+ + K
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

219) int in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 231/415 (56%), Positives = 323/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGL  180
            L SL+ H+FP IGN  ++ L+  +++  ++  E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR +H+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

220) Dda3937_00080 in NC_014500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 222/415 (54%), Positives = 324/415 (79%), Gaps = 1/415 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGTYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAHQRAAEKASRSPEKSFRDVALDWHKSNRTWSENHATRL  120
            L++AR +RD  RKL+++ ++P +Q+ A K     + SF ++A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNYLFPVIGHLPVTELKPRHFIDLLRGIEKKGLLEVASRTRQHLCNIMRHAVHQEL  180
            L S++  +FP IG+  +T L+  +++  +R+ E K + E+ASR +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAANLDGIIATPVKRHYPAlpleqlpellTRIEDYRQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++T  ++H PAL L +LPELL+RI  Y+ G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNNIWTIPATRKAIPGVRYSGRGAKMRTPHIVPLSRQTIAILRQIQE  300
            SELR+ARWSEID+ N +WTIPA R ++PGV++S RG+KMRTPH+VPLS+Q +AIL ++Q 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISRHQVLIFPGAHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQ  360
             + ++ LIF GAH+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAQYLDARKAMMQWWSDYLDMNREGYVAPYVYAR  415
            DAVERQMSHQERN+VRAAYIHKA+ L+ R+ M+QWW+D+LD NRE +++P+ YA+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

221) Pecwa_3419 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 220/413 (54%), Positives = 326/413 (79%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGGKENRLAFGPYPQTTla  61
            LTD+K+R+AKP  K+YKLTD+ G++L V  +G++ W +RYR+ GKE+ LA+G YP+ +L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGISPSQLRKSNNPAVDESRTFQYVATAWHTSSLKLWSDAHADKIL  121
            EAR KRD ARKL++ G+ P + +++++   D   +F+ +A  WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  ICLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI+ ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLVKMENYKGRELTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL ++ +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVKGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAIS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENT+NKALRV+GYDT  ++CGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

222) PC1_0858 in NC_012917


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  394 bits (1483),  Expect = 3e-111, Method: Compositional matrix adjust.
 Identities = 216/413 (53%), Positives = 326/413 (79%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSSAKLWYFRYRFGGKENRLAFGPYPQITla  61
            LTD+K+R+AKP  K+YKLTD+ G++L V  ++++ W +RYR+ GKE+ LA+G YP+++L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGISPSQLRKSNNPAVDESHTFQYVTMAWHSSCLKLWSEAHADKIL  121
            EAR KRD ARKL++ G+ P + +++++   D   +F+ ++  WH+S  K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPAIGAMDIVQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI  ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVATQHHPALPLKRLPELLGKMENYKGRMLTRMALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL+++ +YKG+ +T++A+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAIS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSNYLDVNRDGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+++LD NR+ +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

223) M621_16100 in NC_021659


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  394 bits (1483),  Expect = 3e-111, Method: Compositional matrix adjust.
 Identities = 214/415 (52%), Positives = 323/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLNDTKIRSLKPSAKPFKISDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR+ KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAQQRSAERATALLEETFKSVALSWHKSNRTWSENHATRL  120
            L++AR +RD  RKL+++ ++P +Q+ A +  + L+ +F  +A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLPVSELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAVHQEL  180
            L S++ H+FP+IG+  ++ L+  +++  +++ E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IKHNPAANLDGIIAPPVKRHYPAlpleqlpellTRIKDYKQGRELTRLAVSLTLHLFIRS  240
            I+ NPA ++ G ++   ++H PAL L +LPELL+RI  YK G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRIPHIVPLSCQSIAILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE++PGV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQ  360
             +G++ L+F G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKEYAPPYICGK  415
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD  R  + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

224) A79E_1748 in NC_018522


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  393 bits (1477),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 228/418 (55%), Positives = 327/418 (79%), Gaps = 1/418 (0%)

Query  1    MSLTDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSHLWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KPTDK++K++D+ G++LLV P GS+ W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMPEKMFKTVALAWHSSNKKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+SNK+W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGHLSVSELKPRHFIDLLKGIEVKGLLEVASRTRQHLSNIMRYAVHQGL  180
            L SL+ H+FP IG+  ++ L+  +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDSNPAANLDGVTTPPVRHHYPAlqlerlpellerIDGYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  T   R+H PAL+L RLPELL RI++Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREAIAGVRYSGRGAKMRTAHIVPLSEQAIAILKQIKE  300
            SELR+ARWSEID+ N +WTIPA RE+++GV++S RG+KMRT+H+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGVYELVFPGDHNPYKPMCENTVNKALRLMGYNTKQDICGHGFRTMACSALMESGLWSQ  360
             +G   L+F G H+P KP+ ENTVNKALR+MGY+T QD+CGHGFR+MACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHLEARKAMMQWWSDYLDVCRKTYVPPYIQGQINQ  418
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+LD  R  +++P+  ++IN+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

225) CKO_00953 in NC_009792


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1475),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 229/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGL  180
            L S++ H+FP IGN  ++ L+  +++  ++  E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+LD  R  ++SP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

226) ST548_p7750 in NC_020181


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1476),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 229/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGVRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGL  180
            L S++ H+FP IGN  ++ L+  +++  ++  E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+LD  R  ++SP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

227) A79E_1743 in NC_018522


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1475),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 229/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGL  180
            L S++ H+FP IGN  ++ L+  +++  ++  E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+LD  R  ++SP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

228) KPR_3398 in NC_021232


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1475),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 229/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGL  180
            L S++ H+FP IGN  ++ L+  +++  ++  E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEAYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLDICRKAYVSPY  411
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+LD  R  ++SP+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

229) Dd1591_1514 in NC_012912


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1474),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 223/419 (54%), Positives = 329/419 (79%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRNLKPSAKPYKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K+YK++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAQQRAAEKAPRSPEKSFRDVALDWHKSNRTWSESHATRL  120
            L++AR +RD  RKL+++ ++P +Q+ A K     + SF ++A  WH SN+ W++SH+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHLFPVIGHLPVTELKARHFIDllkgiekkglleVAARTRQHLCNIMRYAVHQEL  180
            L S++ H+FP IG+  +T L++ +++  +++ E K + E+A+R +Q++  +MRYAV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAANLDGIIAPPVKRHYpalpleklpellaRIEDYKQGRELTRMAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L +LPELL+RI  YK G+ +T++AV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSITILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE++PGV++S RG+KMRTPH+VPLS+Q ++IL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWSQ  360
             +G++ LIF G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARQAMMQWWSDYLDMNRESYVAPYVYAQQHKT  419
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD NRE +++P+ YA+ ++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

230) SBO_4174 in NC_007613


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  392 bits (1475),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 223/420 (54%), Positives = 329/420 (79%), Gaps = 2/420 (0%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   ++ +AKP DK+YK++DG+G++L V ++GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTlaqarakrdqakkllaqGIDPKAEQKEAQAENSGAYSFETIAREWHASNKRWSEDHRS  120
            V+L++AR+KRD+A+KL+++G+DP  +++  +       SFE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +VL+ LE  +FP IG+ DI  L+T++LL P++  +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR  240
            + I  NPA DMAGAL+T K +H PAL  SR+PE+L+R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVQLSRQAMILLNQLK  300
            SSELR+ARW E+D+D+++W +PA RE + GV++S RG KM+  H+V LS+Q + +L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G++ L+F G HD+ K +SENTVN ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  EDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLQANKGKTITPYDFAKINKS  420
             DA+ERQ+SH ERN VRAAYIH +EHL+ERRLM+QWWAD+L+AN+ + I+P+++AKIN++
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

231) EbC_39600 in NC_014306


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  391 bits (1472),  Expect = 3e-110, Method: Compositional matrix adjust.
 Identities = 225/416 (55%), Positives = 324/416 (78%), Gaps = 2/416 (0%)

Query  1    MKLNARLVDTAKPKEKTYKMADGGGLYLEVTTKGSKYWRMKYRRPADKKEDRLAFGVWPT  60
            M L    + +AKP +K+YK++DG+G++L V  +GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTLaearakrdeakkMLGQGIDPkaeqkeaqaeNAGAYTFETIAREWHASNKRWSDDHRS  120
            V+L+EAR+KRDEA+K++++G+DP  +++  +       +FE IAR WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RIMRYLELYIFPHIGLADVRRLKTSQLLAPIKSVDASGRHDVAQRLQQRVTAIMRYAVQN  180
            ++++ LE  +FP IG  D+  L+T++LL P+++ +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIESNPAVDMAGALSTVKARHYPALPFSGFPEFLERLAAYRGRIMTRIAVELSLLTFVR  240
            + I  NPA+DMAGAL+TVK +H PAL +S +PE+L R+++Y+G+ +T++AV L+LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFARWDEFDFERALWRVPAQRKEIEGVRYSHRGMKMKEEHLVPLSSQVLALLEKLK  300
            SSELR+ARW E+D++ A+W +PA+R  + GV++SHRG KM+  HLVPLS QV+A+L  L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  QLSGDNERLFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWS  360
              +G+N  +F G HDP+K +SENTVN+ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYIHTSEHLDERCLMVQWWADYLSINRECYISPFDYAK  416
             DA+ERQ+SH ERN VRAAYIH +EHL+ER LM+QWWAD+L  NRE +ISPF+YAK
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

232) plu4460 in NC_005126


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  391 bits (1469),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 228/416 (55%), Positives = 325/416 (79%), Gaps = 2/416 (0%)

Query  1    MKLNARQIEAAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   +I AAKP DKAYKL+DG+G++L + P GS+YWR++YR     KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   ISLADARAKRNEAKKLIANGIDPKATQKETQAEASGEFNFETIARKWHSSNKRWGDYNRA  120
            +SL++AR+KR+EA+KLI++G+DP   ++  +  +  +++FE IAR+WH+SNK+W++ +  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLRSLEQYIFPHIGKIDIRQLKTRELLVPIkavddadkvdvakRLQQCVTAIMRYAVQC  180
            +VL+SLE  +FP IG+ DI  L+T +LL+P++A +  +  ++A RLQQ ++A+MRYAVQ 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GIIESNPALDMAGALSTTKTEHHpalppsrlpellerTALFKGREVTRIAIEFGLLTFVR  240
            GII  NPALDMAGAL+T K +H+PAL  SRLPELL R + +KG+ VT++A+ + LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  ASKLRFVRWDEFDFDNAIWEIPGKREAIENVKFSERGMKMKTPHIVPLSSQAMALLEKLK  300
            +S LR+ RW E+D+DNA+W IP+ RE++  VKFS+RG KM+TPH+VPLS Q +A+L  L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  EYSGDNRCLFPGDRDPNKVMSENTVNKALRVMGYDIKTEICYHGFRTMARGAMGESGIWA  360
              +G+N  +F G +DP K +SENTVNKALRVMGYD   ++C HGFR+MA +A+ ESG+W+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDVIERQLSHLERNNVKAAYLHTSHHLDECRLMLQWWADYLDANRQGFISPYDYAQ  416
             D +ERQ+SH ERN V+AAY+H ++HL+E RLMLQWWAD+LDANR+ FISP++YA+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

233) KOX_24355 in NC_016612


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  390 bits (1467),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 212/415 (52%), Positives = 321/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAHNINPAQQRSAERSTSSPDKTFKYVALDWHKSNRTWSENHASRL  120
            L++AR +RD  RKL+++ ++P +Q+ A +  +  + +F  +A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAIHQEL  180
            L S++ H+FP IG+  ++ L+  +++  +++ E K + E+A+R +Q++  +MR A++  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IENNPAANLEGIISPPVKRHYPALQLERLPELLARIEDYKQGREltrlavlltlhlFIRS  240
            I  NPA ++ G ++   ++H PAL+L RLPELL+RI  YK G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFKNRIWTIPATREAISGVRYSGRGAKMRTPHIVPLSRQSIAILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHRVLIFPGDHNPYKPMCENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLWAQ  360
             +G+  LIF G H+P KP+ ENTVNKALR+M YDT +++CGHG+RAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDSRKAMMQWWSDYLDMCRKAYAPPYICGK  415
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD  R  + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

234) int in NC_003198


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTla  61
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

235) STBHUCCB_46270 in NC_016832


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTla  61
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

236) int in NC_004631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 227/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTla  61
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

237) W5S_1636 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  389 bits (1464),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 221/419 (53%), Positives = 327/419 (79%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLVQNINPAQQRSAERSTSSPEETFKSVALSWHKSNRAWSENHAARL  120
            L++AR +RD  RKL+ + ++P +Q+ A +  +  + +F  +A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVAARTRQHMCNIMRHAVHQEL  180
            L S++ H+FP+IG+  +T L+T +++  +++ E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEHNPAANLDGIVAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L RLPELL+ I  YK G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPLSRQSVAILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE++PGV++S RG+KMRTPH+VPLS+Q VAIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQELIFPGDHNRYKPMCENTVNKALRVMGYDTKDEICGHGFRAMACSALMESGLWAQ  360
             +G++ LIF G H+  KP+ ENTVNKALRVMGYDT +++CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREEYVAPYIYAQQHKT  419
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD+NRE +++P+ YA+ ++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

238) Pecwa_1693 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  389 bits (1463),  Expect = 1e-109, Method: Compositional matrix adjust.
 Identities = 218/419 (53%), Positives = 331/419 (79%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRKLKPSAKSFKVSDSHGLYLLVNSSGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+++GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAQQRSAERTTSSPEKTFKHVALEWHKSNRSWSENHAARL  120
            L++AR +RD  RKL+++ ++P +Q+ A +  +  + +F H+A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLPVTELKTRHFIDllkgiekkglleVTARTRQHMCNIMRHAVHQEL  180
            L S++ H+FP+IG+  +T L+T +++  +++ E K + E+++R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IENNPAANLDGIIAPPVKRHYpalplerlpellaSIEDYKQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L RLPELL+ I  YK G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEINFRNKIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSRQSIAILKQIRD  300
            SELR+ARWSEI++ N +WTIPA RE++PGV++S RG+KMRTPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEVCGHGFRTMACSALMESGVWPQ  360
             +G++ LIF G H+P KP+ ENTVNKALR+MGYDT ++VCGHGFR+MACSAL+ESG+W++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDTNREGYIAPYIYAQQHKT  419
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD+NRE +I+P+ YA+ ++ 
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

239) int in NC_012731


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  388 bits (1460),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 229/415 (56%), Positives = 324/415 (79%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQGL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIEGYHQGRELTRLAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSERGAKMRMPHIVPLSEQAIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S+RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELVFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N L+F G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

240) int in NC_011740


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  388 bits (1461),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 226/418 (55%), Positives = 321/418 (77%), Gaps = 4/418 (0%)

Query  25   VLSPKQIENAKPKTNDYKLTDGGSLYLLVRKTGGKYWRMNYRFDGKQVTLALGVYPDVSL  84
             L+  +I  AKP  + YKLTDG++++LLV+  G++YWR+ YR+ GK+ TLALGVYP+VSL
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  85   ATARKRRDEARQLLADGRDPREAKKPKKEDP-ISPTFESVAREWHSGTMGHPEWKEITRK  143
            + AR +RDEAR+L+++G DP E K++KK  P +  +FE +AR WH++     +W +    
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNK---QWAQSHSD  118

Query  144  KILREMENHLFPAIGSKPIDTLKTRDLMPMLVEMTEKGIGATTSRVKTTMTSIFRYAVQR  203
            K+L+ +E H+FP IG++ I TL+T DL+  +     K I   +SR++  ++++ RYAVQ 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  204  GIVDYNPAHDLKGAITAPKVRHrpalplerlpellaKTRSYTGRPLTRLAVLFSLHTFVR  263
            GI+ YNPA D+ GA+T+ K +HRPAL L RLPELL++  SY G+P+T+LAV+++L  F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  264  SSELRHARWEEIDIENGLWTIPGQREEIAGVKFSDRGAKMGAAHYVPLSSQAIGVLEDIR  323
            SSELR ARW EIDI+N++WTIP++RE ++GVKFS+RG+KM ++H VPLS Q +++L +++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  324  KISGEYLLVFPGDSNPYKPMSENTVNKALRTMGYDTQTDVCLHGFRAMACSALTESGLWS  383
              +GE  L+F G  +P KP+SENTVNKALR MGYDT  DVC HGFRAMACSAL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  384  RDAVERQMSHQERNEVRAAYVHLAQHMQERRRMMQWWSNYLELNKDEFHAPYDLSGIN  441
            RDAVERQMSHQERN VRAAY+H A+H++ERR M+QWW+++L+ N++ F +P++ + IN
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

241) TY21A_22260 in NC_021176


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  388 bits (1460),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 321/417 (77%), Gaps = 1/417 (0%)

Query  2    LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTla  61
            LTD+KIRAAKP  K+YKLTD+ G++L V  +GS+ W +RYR+ GKE+ LA+G YP+V+L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL  121
            EAR KRD ARKL+  GV P   ++A K   D   +F+ IA  WH+S  K W++ H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT  301
            LR ARW E+++   +WT+PA RE++  V+FS+RG+KM+  HLVPLS Q VA+L +++  +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA  361
            GE+ ++F+GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ES+LWS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGMRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYARRHKA  418
            +ERQMSH+ERNG+RAAY+HKAEHLE R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

242) LHK_01737 in NC_012559


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  388 bits (1460),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 232/438 (53%), Positives = 324/438 (74%), Gaps = 20/438 (4%)

Query  6    PLTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYRINGKQKTLAIGVYCQFAL  65
            +LT+  I+  KP DK+YK +DG+G++LL++PNGS+YWR+ YRI GK+KTLA+GVY +   
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPE---  58

Query  66   VDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYVAR  125
                         +SL++AR   D AR +++ G+DP E K+ AKK   +L   SF  +AR
Sbjct  59   -------------VSLSEARTKRDEARKLISEGVDPCEQKR-AKKVVPDLQL-SFEHIAR  103

Query  126  EWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDVTS  185
             WHA   ++W  SH+ +VL  LE  +FP IG+  ++ + T ++L+++R  EAK+I +++S
Sbjct  104  RWHAS-NKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIAS  162

Query  186  RLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAKLR  245
            RL+Q +  + RYAVQ+G I +NP+ D+ GAL T +  HRPAL L+RLPELL RI++ K +
Sbjct  163  RLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQ  222

Query  246  PLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRTPH  305
            P+T+ A+ L LL F+RSSELR+ARW EID+D A+W IP+ERE+LPGVKFS RG+KMRTPH
Sbjct  223  PVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPH  282

Query  306  LVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCGHG  365
            LVPL +Q +A++ E+++ +G   L+F+G HDP KP+SE+TVN AL+ MGYDT  +VCGHG
Sbjct  283  LVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHG  342

Query  366  FRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLDAQ  425
            FRAMACSAL ESG  S +A+ERQMSHQER++VRAAY HKAE L ERR M+ WWADFLDA+
Sbjct  343  FRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDAN  402

Query  426  REGTYIEPLEFKRGESNV  443
            RE  +I P+E+ + ++ +
Sbjct  403  RE-RFISPFEYAKINNPL  419

243) int in NC_011751


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  386 bits (1450),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 230/415 (56%), Positives = 323/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMSENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+SENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

244) KPHS_34600 in NC_016845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  386 bits (1450),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 230/415 (56%), Positives = 323/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMSENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+SENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

245) SeAg_B4773 in NC_011149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 220/419 (53%), Positives = 325/419 (78%), Gaps = 2/419 (0%)

Query  1    MKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPT  60
            M L   +I +AKP +KAYK++DG+G++L V P+GS+YWR++YR  +  KE  LA+GVYP 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   ITlaearakrdaakkllSQGIDPKVEQKGAQAEIEGAYLFETIARQWHASNLTWSEDHSH  120
            ++L+EAR+KRD A+KL+S+G+DP  ++++ +   +    FE IAR+WHASN  W++ HS+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGVQN  180
            +VL +LE  +FP IG+ D  TL T++LL P++A ++    ++A RL QR++A+MR++VQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIR  240
            +++  NPA DMAGAL +VK  H+PAL   R+PE+L R++ YKG+ +T+LAV L LL FIR
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLH  300
            SSE+R+ARWSE++++ + WTIP+ R P+PGVK S+RG KM+T H+VPLSKQ   I+  L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  ALSGKGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWN  360
            + +G   +IF + HDP+K +SENTVN ALRVMGYDT  +VCGHGFR+MA +AL ES LW+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSITPYDFARVHG  419
             DA+ERQ+SH ER+ V+++Y+H +E LEERRLMLQWWAD++DAN++  I+P+++A+++ 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

246) SBO_1221 in NC_007613


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 219/419 (53%), Positives = 319/419 (77%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRFSGKESRVSLGAYPLVS  60
            M+L D+KIR  KP+ K+ KL+D+ G++LLV+  GSR W L+YR+ GKE  ++LG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVALAWHKTNKKWSPDYAARI  120
            L+EAR +RD+ RKL+++ ++P +Q+ + K  +  +  F  +A  WH +NK+W+   + ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEVASRTRQQLCNIMRYAVQQGF  180
            L S+E H+FP IG+  +TTL+T ++   +R  E K + E+ASR +Q++  +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  TENNLAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLFIRS  240
               N A ++ G  +   ++H PAL L RLPEL+ RIG Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRGAKMRTPYIVPLSRQAIAILKQIKE  300
            SELR+ARW+EID+ N +WTIPA RE++  V+FS RG+KMRTP +VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHLELVFPGDHNPYKPMSENTVNRALRLMGYDTKTDVCGHGFRTMACSALVETELWSR  360
             +G+  L+F G H+P KP+SENTVN+ALR+MGYDT  DVCGHGFR+MACSAL+E+ LWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DTVERQMSHQERNSVRAAYIHRAEHLDARTAMMQWWSDYLDVSREGYVAPYIYARRHKA  419
            D+VERQMSHQERN+VRAAYIH+AEHL+ R  M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

247) SbBS512_E0979 in NC_010658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  385 bits (1447),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 221/419 (53%), Positives = 321/419 (77%), Gaps = 1/419 (0%)

Query  1    MFLNDSKIRKLKPSSRPVKLSDAHGLYLLVNPGGSRIWYLKYRFNGKESRVSLGAYPLVS  60
            M L D+KIR  KP+ ++ KL+D+ G++LLV+P GSR W L+YR+ GKE  ++LG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVALAWHKTNKKWSADYAARI  120
            L+EAR +RD  RKL+++ ++P +Q+ A K     +  F  +A  WH +NK+W+   + ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEVASRTRQQLSNIMRYAVQQGL  180
            L S+E H+FP +G+  +++L+T D+   +R  E K + E+ASR +Q++S +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  TDSNPAQHLEGVTASPVKNHYPAlplerlpelldrIGDYRQGRELTRLAVVLTLHLFIRS  240
               NPA ++ G  ++  ++H PAL L RLPELL RIG Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRGAKIRTPHIVPLSCQAIAILKQIQE  300
            SELR+ARWSEID+ + +WTIPA RE++  V+FS RG+K+RTPH+VPLS Q +AIL ++Q 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  LSGHLDLVFPGDHNPYKPMSENTTNRALRLMGYDTKTEICGHGLRAMACSALVESDLWSR  360
             +G+ +L+F G H+P KP+SENT N+ALR+MGYDT  ++CGHG+RAMACSAL+ES+LWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DTVERQMSHQERNSVRAAYVHKAEHLEARKAMMQWWSDYLDVCREGYVAPYIYARQHEA  419
            D+VERQMSHQERN+VRAAY+HKAEHLE R+ M+QWW+D+LD  RE +++P+ YA+ +++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

248) CKO_00917 in NC_009792


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  385 bits (1446),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 229/415 (56%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

249) ST548_p7779 in NC_020181


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  385 bits (1446),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 229/415 (56%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

250) A79E_1712 in NC_018522


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  385 bits (1446),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 229/415 (56%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

251) Rahaq2_2006 in NC_016818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  384 bits (1445),  Expect = 4e-108, Method: Compositional matrix adjust.
 Identities = 218/415 (53%), Positives = 321/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLNDTKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRIDRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAYARQQRDSIRKLLAQNINPAQQRSAERTPSTPEKTFKHVALEWHNSNRTWSENHATRL  120
            L+ AR +RD  RKL+++ ++P +Q+ A +  +  + +F H+A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPIIGHLQVTELNTRHFIDLLKRIEKKGLLEVAARTRQHMCNIMRHAVHQEL  180
            L S++ H+FP+IG+ ++T LNT +++  ++  E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IENNPAANLEGIIAPPVKRHYPAlplerlpelliriKDYQQGRELTRLAVSLTLHLFIRS  240
            I  NPA ++ G ++   ++H PAL L RLPELL RI  Y+ G+ +T+LAV L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNRIWTIPATREAIPGVLYSGRGAKMRTPHIVPLSRQSIAILKQIRE  300
            SELR+ARWSEID+ N +WTIPA RE++PGV +S RG+KMRTPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLWAQ  360
             +G++ L+F G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYAPPYICGK  415
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD  R  + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

252) PPS_0628 in NC_015733


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1440),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 226/417 (55%), Positives = 320/417 (77%), Gaps = 4/417 (0%)

Query  6    VPLTDPKCDAAKPREKDYKLFDGKGLYLLVKPSGVKTWRMKYTKPDGRDGLATFGNYPAL  65
            ++LTD+K  AAKP +K YKL DG G++LLV P+G + WR++Y +  G++   ++G YP +
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEV  59

Query  66   GLKaarerraqalellaaGKDPIEQARLDKQEAANARANTFRLLAQEWHAACARKWTPGH  125
            +L  AR +R +A  L++ G DP EQ R  K         +F  +A+ WHA+  ++W+ +H
Sbjct  60   SLSEARTKRDEARKLISEGVDPCEQKRAKK--VVPDLQLSFEHIARRWHAS-NKQWAQSH  116

Query  126  AATVWRRIESHLLPTLGDRPVAELKTRDLLVPLKAAEKRDTLDTAARLRQYMTGILRMAV  185
            +  V + +E+H++P +G+R ++ L+T DLL+P++AAE ++  + A+RL+Q +++++R AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  186  QHGHLDFNPAIDLQGATATRKTAHRPALPFDRLPELLQRIDADSGRGLTKLAVQLTLLVF  245
            Q G + +NPA+D+ GA +T K  HRPAL + RLPELL RI++  G+ +T+LAV L LLVF
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  246  IRSSELRFARWGEIDMGRLMWEIPGERAPIEGVKNSHRGSKMSTPHLVPLSRQSVSVLER  305
            IRSSELR+ARW+EID++  MW IP+ER P+ GVK SHRGSKM TPHLVPLS+Q V++L  
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  306  IRDLTGRFDLVFAGDHHHWKPMSENTVNKALRRMGYDTKSEVCGHGFRTMACSALVESGL  365
            ++  +G  +L+F+G H+ +KP+SENTVNKALR MGYDT  +VCGHGFR+MACSAL+ESGL
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  366  WSKDAVERQMSHQERNTVRAAYIHKAEHIQERRLMVQWWADYLDANRVEAITPYDFA  422
            WS+DAVERQMSHQERN VRAAYIHKAEH++ERRLM+QWWAD+LDANR   I+P+++A
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

253) ROD_20671 in NC_013716


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1439),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 223/419 (54%), Positives = 319/419 (77%), Gaps = 1/419 (0%)

Query  1    MSLNDSKIRNFKSPSRPVKLSDSHGLYLLVKPGGSRIWYLKYRFNGKESRVSLGAYPLVS  60
            M+L D+KIR  K+  ++ KL+D+ G++LLV P GSR W L+YR+ GKE  ++LG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARLQRDGIRKLLAQNISPAQQRVaakaaaSPEKCFEAVALAWHKTNKKWSADYAERI  120
            L+EAR +RD  RKL+++ + P +Q+ A K  +  +  FE +A  WH +NK+W+   ++++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMKNHIFPAIGHMPVTLLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQQGF  180
            L S+  H+FP IG+  +T L+T ++   ++  E K + E+ASR +Q++  +MRYAVQ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IENNPAQHLEGVTAPPVKNHYPAlplerlpellerIGDYQQGRQLTRLAVVLTLHLFIRS  240
            I  NPA ++ G  +   ++H PAL L RLPELL RIG Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNKIWTIPATRETIEKVRFSGRGAKMHTPHIVPLSRQAIAILKQINE  300
            SELR+ARWSEID+ N +WTIPA RE +  V+FS RG+KM+TPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKTDVCGHGFRAMACSALVESELWSR  360
             +G+  L+F G H+P KP+SENT+N+ALR+MGYDT  DVCGHGFRAMACSAL+ES LWSR
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHRAEHLDARKDMMQWWSDYLDVSREGYVAPYIYARRHKA  419
            DAVERQMSHQERN+VRAAYIH+AEHL+ R+ M+QWW+D+LD +RE +++P+ YA+ +++
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNP  418

254) YPA_1295 in NC_008150


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

255) int2 in NC_005810


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

256) int in NC_003143


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

257) int in NC_017154


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

258) int in NC_017160


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

259) y2393 in NC_004088


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

260) YPDSF_1208 in NC_009381


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1441),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 322/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

261) Dd1591_3717 in NC_012912


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  383 bits (1440),  Expect = 9e-108, Method: Compositional matrix adjust.
 Identities = 223/418 (54%), Positives = 326/418 (78%), Gaps = 2/418 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   ++ +AKP +K+YK++DG+G++L + P GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            V+L+EAR+KRDEA+KL+ +G+DP  +++  +       +FE IAR+WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +V++ LE  +FP IG  DI  L+T++LL P++A +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            + I  NPA DM+GALTT K +H PAL   RL E+LSR+++Y+G+ +T++AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELR+A+W E+D+D+A W +PA+RE++ GV++S RG KM+  H+VPLS+Q VA+L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
            + +G+N  +F G HDP K +SENTVN+ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDANREWYVTAYDFGKLT  418
             DA+ERQ+SH ERN VRAAY H +E L+ERRLM+QWWAD+LDANRE+++++++++K+ 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKIN  416

262) KPK_1842 in NC_011283


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  382 bits (1437),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 224/411 (55%), Positives = 320/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLSDAKIRTLKPTDKPFKVADSHGLYLLIKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+L+DAKIR+ KPTDK++K++D+ G++LL+ P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGACTPEKLFKTVALAWHKSNTKWSKNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH SN +W+++ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHVFPVIGHLSVSELKPRHFIDllkgiekkglleVASRTRQHLSNIMRYAVHQGV  180
            L SL+ HVFP IG+  ++ L+  +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDSNPAANLDGVTTPPVRRHYPAlplerlpelieriDGYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  T   R+H PAL L RLPEL+ RI++Y +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNRVWTIPGTREAIEGVRYSGRGAKMRTPHIVPLSEQAIAILKRIRD  300
            SELR+ARWSEID+ N +WTIP+ RE++ GV++S RG+KMRTPH+VPLS Q +AIL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGDGELVFPGDHNPYKPMCENTVNKALRLMGYDTKKDICGHGFRAMACSALMESGLWSQ  360
             +G+  L+F G H+P KP+ ENTVNKALR+MGYDT +D+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHLDARKAMMQWWSDYLDTCREAYVPPY  411
            DAVERQMSHQERN VR AYIHKAEHL+ R+ M+QWW+D+LD+ RE +++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

263) YpAngola_A2104 in NC_010159


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  381 bits (1434),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 321/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS  60
            M+LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRGMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALR MGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQE+N VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

264) Dd703_3412 in NC_012880


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  381 bits (1432),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 222/413 (54%), Positives = 330/413 (80%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKENRLAFGPYPQTTla  61
            LTD+K+R+AKP  K+YKLTD+ G++L V P+G++ W +RYR+ GKE+ LA+G YP+ +L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGISPSQLRKTNNLAADESRTFQYLAQTWHTSSLKLWSEAHADKIL  121
            EAR KRD ARKL++ G+ P + ++++++ +D   +F+ +A+ WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPAIGAMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI+ ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVATQHHPAlplkrlpellekMENYKGRMLTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL ++ +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHLWSVPAQREAVDGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAIS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

265) W5S_1679 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1430),  Expect = 6e-107, Method: Compositional matrix adjust.
 Identities = 216/422 (52%), Positives = 310/422 (74%), Gaps = 8/422 (1%)

Query  1    MSLTDTKVKKAKPLEKEYKLTDGFGMHLLIHPNGSKYWRLSYRFAQKQKLLALGVYPAIS  60
            M+LTD+K++ AKP +K YKLTDG GM LL+HPNGS+YWRL YR+  K+K LALGVYP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LTDARERRDEARKLIANGIDPGARKKSGREQQGTHDESRSFAVMARAWAETKTKWSEDYK  120
            L++AR +RDEARKLI++G+DP  +K   R ++   D   SF  +AR W  ++ +W++   
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQK---RAKKVVPDLQLSFEHIARRWHASNKQWAQSHS  117

Query  121  VKVWRRIENYLLPDLGNRDVSELDTSDLLIPLRKVEKLGYLDIAMRLKQYTTSIMRYAVQ  180
             KV + +E  ++P +GNRD++ L+T+DLLIP+R  E     +IA RL+Q  +++MRYAVQ
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  QKIISYNPAYDLQGTIEKGETAHRPSIEIYEIPDLLQKLDNYRGRGlltelairltllVF  240
              II YNPA D+ G++      HRP++++  +P+LL ++++Y+G+ +     +   L VF
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLL-VF  236

Query  241  VRSSELRFARWSEIDFKKSLWVIPEQRKEVKGVKHSGRGAKMKRKHFVPLCRQAVEILKE  300
            +RSSELR+ARWSEID+ +++W IP +R  + GVK S RG+KM+  H+VPL +Q V IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  301  VKQITYGEKAGDGFIFTGFYDSDSAMSSGTINKALQRMGYDTKTDLCGHGFRTLACSALT  360
            ++  +    + +G+IFTG  D+  ++S  T+NKAL+ MGYDT  D+CGHGFR++ACSAL 
Sbjct  297  LQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  361  ESGLWSEDTVELQMSHKEKNTVRSAYTHKVSHLDQRKLMLQWWADFLDANRNGVVSPFEF  420
            ESGLWS D+VE QMSH+E+N VR+AY HK  HL++R+LMLQWWADFLDANR+  +SPFE+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEY  412

Query  421  AQ  422
            A+
Sbjct  413  AK  414

266) Dd1591_3537 in NC_012912


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1429),  Expect = 7e-107, Method: Compositional matrix adjust.
 Identities = 224/413 (55%), Positives = 327/413 (80%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKPLTKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKESRLAFGPYPQTTla  61
            LTD+K+R+AKP  K+YKLTD+ G++L V P+G++ W +RYR+ GKE  LA+G YP+ +L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGISPSQLRKANNPAVDESRTFQYVAQAWHTSSLKLWSDAHADKIL  121
            EAR KRD ARKL++ G+ P + ++A++   D   +F+ +A+ WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPTIGAMDISQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI+ ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTLVVTQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I SYKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQALS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENT+NKALRV+GYDT  ++CGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

267) int in NC_015761


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1428),  Expect = 7e-107, Method: Compositional matrix adjust.
 Identities = 223/413 (54%), Positives = 312/413 (76%), Gaps = 0/413 (0%)

Query  6    MSLTDTAIRKLRPTDKPFKLGDSAGLYLLIKPNGSKLWYMKYRIDGKEKKLAFGPYPDVS  65
            M+LTD+ IR  +PTDK++KL D+AG++LL+ PNGS+ W ++YRI GKEK LA+G YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  66   LLTARQLRDAARIKMREGVDPSVDKKIAQQKKKNGQTFRQIAINWHADHRRWSEHYATTI  125
            L  AR  RD AR  + EGVDP  +K+  +       +F +IA  WHA +++W++  +  +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  126  RRRLEMYIFPDIGDRYIDQIVTEDLLFTLRKVENKGFLEITARLKNYVTEIMRYAVKKQL  185
             + LE  +FP IG+R I  + T DLL+ +R  E K + EI++RL++ ++ +MRYAV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  186  IRSNPALDLDGEFTPPETQHYPAlpleklpellSRTDNYSGRLLTRYALKLSLLFFVRSS  245
            IR NPALD+ G +T    QH PAL L +LPELLSR ++Y G+ +T+ A+ L+LL F+RSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  246  ELRFARWSEIDWQQKLWIIPEEREQIENVRFSHRGTKMKTQHIVPLSDQAMAILKQTEAL  305
            ELR+ARWSEID ++ +W IP ERE +  V+FSHRG+KM+T H+VPLS Q +AIL + ++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  306  SGHLAFIFPGEYDQDKCMSDNTISKALRVMGYDTRKEICGHGFRAMACSALSESGLWSKE  365
            +G+ ++IF G  D  K +S+NT++KALRVMGYDT +++CGHGFRAMACSAL ESGLWS++
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  366  AIEKQMSHQERNSVRAAYIHKAEYLEERINMMQWWADYLDANTKRHVSPYQFA  418
            A+E+QMSHQERN+VRAAYIHKAE LEER  M+QWWAD+LDAN  R +SP+++A
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

268) int in NC_011748


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MFLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYQAIS  60
            M LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG Y  +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

269) O3M_09700 in NC_018650


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MFLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYQAIS  60
            M LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG Y  +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

270) O3O_15890 in NC_018661


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MFLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYQAIS  60
            M LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG Y  +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

271) O3K_09735 in NC_018658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1428),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MFLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYQAIS  60
            M LTDAKIR+ KP+DK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG Y  +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

272) ECNA114_2039 in NC_017644


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1427),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISGKESRIALGTYPAIS  60
            M+LT AKIR+ KP+DK++K++D+ G++L V P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

273) PC1_0501 in NC_012917


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  380 bits (1427),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 220/413 (54%), Positives = 328/413 (80%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKHLAKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKENRLAFGPYPQITla  61
            LTD+K+R+AK   K+YKLTD+ G++L V P+G++ W +RYR+ GKE+ LA+G YP+++L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGLSPSQLRKSNNPAVEESRTFQYVAMTWHTSSLKLWSEAHADKIL  121
            EAR KRD ARKL++ G+ P + +++++   +   +F+ +A  WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  TCLKRYVFPAIGSMDIAQVETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG+ DI+ ++T +L   V+A + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVVTQHHPAlplkrlpellekIENYKGRMLTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I +YKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQAYS  301
            LR+ARW E+++   +W++PA+RE++ GV+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GESVFVFPGAHTLNKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKDA  361
            GE+ ++F GAH   KP+SENT+NKALRV+GYDT  ++CGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

274) ETA_03770 in NC_010694


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  379 bits (1425),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 227/350 (65%), Positives = 297/350 (85%), Gaps = 1/350 (0%)

Query  1    MALSDVKVRSAKPEVKACKLTDGDGMVLLAHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KA KLTDG GM LL HPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAFKVEQEQEAITFEMVARDWQASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR W+ASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F+ IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELSRIPELLHRIDHYSGRPltrlaleltllVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+LSR+PELL RI+ Y G+P+T+LA+ L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELCFARWSEVDFETAMWTIPGEREPSEGVKHSQRGSKMRTPHLVPLSRQALGILEKIKS  300
            SEL +ARWSE+D++ AMWTIP+EREP  GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACS  350
             +G+  LIF G HDPRKP+SENTVNKALRVMGYDT  +VCGHGFR+MACS
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACS  349

275) int in NC_011750


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  379 bits (1423),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 226/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISGKESRIALGTYPAIS  60
            M+LT AKIR+ KP+DK++K++D+ G++L V P +SR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

276) CE10_2255 in NC_017646


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  379 bits (1423),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 226/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISGKESRIALGTYPAIS  60
            M+LT AKIR+ KP+DK++K++D+ G++L V P +SR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

277) NRG857_09860 in NC_017634


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  379 bits (1423),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 226/415 (55%), Positives = 320/415 (78%), Gaps = 1/415 (0%)

Query  1    MSLTSAKIRTLKPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISGKESRIALGTYPAIS  60
            M+LT AKIR+ KP+DK++K++D+ G++L V P +SR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHIFPVIGNLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQEL  180
            L SL+ H+FP IGN  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRS  240
            I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD  300
            SELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK  360
             +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  415
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

278) Dda3937_01301 in NC_014500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  378 bits (1420),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 219/419 (53%), Positives = 323/419 (78%), Gaps = 2/419 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   ++ +AKP +K+YK++DG+G++L + P GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTladarakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            V+L++AR+KRDEA+KL+ +G+DP  +++  +       +FE IAR+WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +V++ LE  +FP IG  DI  L+T++LL P++A +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            + I  NPA DM+GALTT K +H PAL   RL E+LSR+++Y+G+ +T++AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELR+A+W E+D+D+A W +PA+RE++ GV++S RG KM+  H+VPLS+Q VA+L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
            + +G+N  +F G HDP K +SENTVN+ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLEVLKREYITSYDFAKMSG  419
             DA+ERQ+SH ERN VRAAY H +E L+ERRLM+QWWAD+L+  +  +I+++++AK++ 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

279) KPN2242_15195 in NC_017540


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 215/418 (52%), Positives = 320/418 (77%), Gaps = 1/418 (0%)

Query  1    MSLNDSKIRNLKPSAKPFKVSDSNGLYLLIKPGGSRHWYLKYRINGKESRIALGAYPAVS  60
            M+L D+KIR  KP+ K++K++D+ G++LL+ P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRASERRACTPEKVFKTVALAWHKNNKKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+ + +     +  F  +A  WH +NK+W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGHLSVTELKPHHFIDllkgieekglleVASRTRQHLSNIMRHAVHQGF  180
            L S++ H+FP IG+  +T L+  +++  +++ E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDTNPAANLDGVTAPPMRHHYPALPLERLPELIEHIEAYHQGREltrlavlltlhlFIRS  240
            I  NPA ++ G  +   R+H PAL L RLPEL+ +I +Y +G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFINRIWTIPATREAIVGVRYSGRGAKMRTAHIVPLSQQAIAILKRIKE  300
            SELR+ARWSEID+ N +WTIPA RE++ GV++S RG+KMRT+H+VPLS+Q +AIL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGAYELVFPGDHNPYRPMCENAVNKALRLMGFDTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G H+P +P+ EN+VNKALR+MG+DT QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHLEARKAMMQWWSDYIDTCRVAYVPPFNTGRDKN  418
            DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D++D+ R  +++PF+ ++ +N
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

280) Dd703_3554 in NC_012880


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  377 bits (1419),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 224/416 (54%), Positives = 321/416 (78%), Gaps = 2/416 (0%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   ++ +AKP +K+YK++DG+G++L + P GS+YWR++YR  +  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILG--KEKTLALGVYPE  58

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAYTFETIARQWHASNKRWGDYHRA  120
            V+L+EAR+KRDEA+KL+ +G+DP  +++  +       +FE IAR+WHASNK+W++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  121  RVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYAVQN  180
            +V++ LE  +FP IG  DI  L+T++LL P++A +A    ++A RLQQR++A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  DYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR  240
            + I  NPA DM+GALTT K +H PAL   RL E+LSR+++Y+G+ +T++AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  SSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLK  300
            SSELR+A+W E+D+D+A W +PA+RE++ GV++S RG KM+  H+VPLS+Q VA+L +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  301  AISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWS  360
            + +G+N  +F G HDP K +SENTVN+ALR MGYDT  +VCGHGFR+MA +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  361  DDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDANRKETTAPYDYAN  416
             DA+ERQ+SH ERN VRAAY H +E L+ERRLM+QWWAD+LDANR    +P++YA+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

281) Entas_3110 in NC_015968


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  377 bits (1418),  Expect = 5e-106, Method: Compositional matrix adjust.
 Identities = 218/413 (53%), Positives = 312/413 (76%), Gaps = 4/413 (0%)

Query  5    ELSPKKVENAKPKETDYKLTDGGSLYLLVKKNGTKAWRMNYRFNGKQATLALGVFPDVSL  64
             L+  K+  AKP +  YKLTDG++++LLV  NG++ WR+ YR+ GK+ TLALGV+P+VSL
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  65   ALARKRRDEARQLLADGVDPRVSKRAAPTEPS-SATFQTIALEWHKGSIGHPSWKEITRI  123
            + AR +RDEAR+L+++GVDP   KRA    P    +F+ IA  WH    ++  W +    
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWH---ASNKQWAQSHSD  118

Query  124  KILREMENHIFPFIGNKPIDSLKTSDLLPLLVRMSDQGIGATTGRVKTTLASVFRYAIQR  183
            K+L+ +E H+FPFIGN+ I +L+T+DLL  +     + I   ++R++  +++V RYA+Q 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  184  GIVEYNPTHDLRGAIASPKIKHrpalplerlpelISKIDSYTGRPLTKLAVLFSLHTFVR  243
            GI+ YNP+ D+ GA+++ K +HRPAL L RLPEL+S+I+SY G+P+T+LAV+++L  F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  244  SSELRHARWEEINFETAMWTIPAQRKRIEGVKYSERGAKMGSIHYVPLSNEAIDVLEAIK  303
            SSELR ARW EI+++ AMWTIPA+R  + GVK+S+RG+KM + H VPLS++ + +L  ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  304  KISGEYELIFPGDSNPYKPMSENTVNKSLRIMGYDTQADICLHGFRAMACSALTESGLWS  363
              +GE  LIF G  +P KP+SENTVNK+LR+MGYDT  D+C HGFRAMACSAL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  364  RDAVERQMSHQERNEVRAAYVHLAQHMQERRRMMQWWSHYIISNCESYIAPYE  416
            RDAVERQMSHQERN VRAAY+H A+H++ERR M+QWW++++ +N E +I+P+E
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

282) Dda3937_02713 in NC_014500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1410),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 219/413 (54%), Positives = 325/413 (79%), Gaps = 1/413 (0%)

Query  2    LTDSKVRSAKPLAKSYKLTDSQGLYLTVSTSGAKLWYFRYRFGGKENRLAFGPYPQTTla  61
            LTD+K+R+AKP  K+YKLTD+ G++L V  +G++ W +RYR+ GKE+ LA+G YP+ +L+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   earekrdaarkllaSGISPSQLRKTNNPAVDESHTFQSVTMAWHTSSLKLWSDAHADKIL  121
            EAR KRD ARKL++ G+ P + +++++   D   +F+ ++  WH+S+ K W+++H+DK+L
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQSHSDKVL  121

Query  122  ICLKRYVFPAIGAMDIAQVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI  181
              L   VFP IG  DI+ ++T +L   V++ + K + ++A+R++Q+++ +MR AVQ G+I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  KYNPAYDLDGVVTPVATQHHPAlplkrlpellekIESYKGRMLTRLALELNLHVFLRSSE  241
            +YNPA D+ G +T V  QH+PAL L RLPELL +I SYKG+ +T+LA+ LNL VF+RSSE
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSE  241

Query  242  LRFARWDEFNLKAHIWSVPAQREAVNDVRFSERGAKMKDEHLVPLSRQAVALLKQIQAIS  301
            LR+ARW E+++   +W++PA+RE++ +V+FS+RG+KM+  HLVPLS+Q VA+L ++Q+ +
Sbjct  242  LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWA  301

Query  302  GKSVFVFPGAHTLNKPMSENTINKALRVIGYDTKSEVCGHGFRTMACSALNESGRWSKDA  361
            G + ++F GAH   KP+SENT+NKALRV+GYDT  +VCGHGFR+MACSAL ESG WS+DA
Sbjct  302  GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDA  361

Query  362  IERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLDVNREGYVAPYIYAR  414
            +ERQMSH+ERNGVRAAY+HKAEHLE R  M+QWW+D+LD NRE +++P+ YA+
Sbjct  362  VERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

283) ECP_1962 in NC_008253


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

284) ECABU_c22620 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

285) c2449 in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

286) i14_2259 in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

287) i02_2259 in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

288) ECOK1_2168 in NC_017628


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

289) intA_3 in NC_022370


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

290) UM146_07190 in NC_017632


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

291) UTI89_C2204 in NC_007946


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/411 (56%), Positives = 319/411 (78%), Gaps = 1/411 (0%)

Query  1    MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS  60
            M+L DAKIR+ KPTDK++K++D+ G++LLV P GSR W L+YRI GKE  +ALG YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV  120
            LS+AR +R+  RK+++  ++P +Q+ A +     +  F  +A  WH+S+K+W+Q+ +D+V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LARLNRHVFPTIGHLPVTELKSRHFiellkgieekglleVASRSRQHLSNIMRYAVHQGL  180
            L  L+ HVFP IG+  +T L++ +++  +++ E K + E+ASR +Q++S +MRYAV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IEINPAANLDGVTASPARRHYPTlplerlpellerIDSYHQGRELTRLAVLLTLHVFIRS  240
            I  NPA ++ G  ++  R+H P+L L RLPELL RI+SY +G+ +T+LAV+L L VFIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE  300
            SELRYARW+EI++ N +WTIPA RE+++GV++S RG+KMRTPH+VPLS QV++IL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ  360
             +G   L+F G HDP KP+SENT+NKALR MGY+T QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPY  411
            DAVERQMSHQERN VR AYIHKAEH+E R  M+QWW+D+LD   E  ++P+
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPF  410

292) Pecwa_1727 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 216/423 (52%), Positives = 308/423 (73%), Gaps = 9/423 (2%)

Query  1    MSLTDTKVKKAKPLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFAQKQKLLALGVYPAIS  60
            M+LTD+K++ AKP +K YKLTDG GM LLVHPNGS+YWRL YR+  K+K LALGVYP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LTDARERRDEARKLIANGIDPGAKKKASIREQPGAQDESRSFAVMARAWAETKTKCSEDY  120
            L++AR +RDEARKLI++G+DP  +K    R +    D   SF  +AR W  ++ + ++  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQK----RAKKVVPDLQLSFEHIARRWHASNKQWAQSH  116

Query  121  KVKVWRRIENYLLPDLGKRDVSELDTSDLLTPLRKVEKLGYLDIAMRLKQYTTSIMRYAV  180
              KV + +E  ++P +G+RD++ L+T+DLL P+R  E     +IA RL+Q  +++MRYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  181  QQKIISYNPAYDLAGTVEKGETAHRPSIEIYEIPDLLQKIDDYHGRGlltelairltllV  240
            Q  II YNPA D+AG++      HRP++++  +P+LL +I+ Y G+ +     +   L V
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLL-V  235

Query  241  FVRSSELRFARWNEIDFKKSLWVIPEQRKEVKGVKYSGRGAKMKRKHFVPLSRQAVEILK  300
            F+RSSELR+ARW+EID+ +++W IP +R  + GVK+S RG+KM+  H+VPLS+Q V IL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  301  EVKQITYGEKAGDGFIFTGFYDSDSAMSSGTINKALQRMGYDTKTDLCGHGFRTLACSAL  360
            E++  +    + +G+IFTG  D+  ++S  T+NKAL+ MGYDT  D+CGHGFR++ACSAL
Sbjct  296  ELQTWA----GENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  361  TESGLWSEDTVELQMSHKEKNTVRSAYTHKVSHLDQRKLMLQWWADFLDANRNGVVSPFE  420
             ESGLWS D+VE QMSH+E+N VR+AY HK  HL++R+LMLQWWADFLDANR+  +SPFE
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  421  FAQ  423
            +A+
Sbjct  412  YAK  414

293) Rahaq2_2650 in NC_016818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  371 bits (1395),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 214/417 (52%), Positives = 321/417 (77%), Gaps = 5/417 (1%)

Query  1    MSLNDSKIRNLKPSPKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVS  60
            M+L D+KIR  KP+ K++K++D+ G++LLV+P GSR W L+YRI  KE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAQQRSAERTPSTPEKTFKHVALEWHNSNRTWSENHASRL  120
            L++AR +RD  RKL+++ ++P +Q+ A +  +  + +F H+A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMDNHIFPVIGHLPVAELKPRHFIDLLKSIEKKGLLEVAARTRQHMYNIMRHAVHQEL  180
            L S++ H+FP IG+  ++ L+  +++  +++ E K + E+A+R +Q++  +MR AV+  +
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  TEHNPAANLDGIIAPPIKRHYPAlplerlpellirirDYQQGREltrlavlltlhlFIRS  240
               NPA ++ G ++   ++H PAL L RLPELL RI  Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFKNRIWTIPATRDSIPGVRYSGRGAKMRTPHIVPLSRQAITILKQI--  298
            SELR+ARWSEID+ N +WTIPA R+++PGV++S RG+KMRTPH+VPLS+Q ++IL ++  
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  299  WEISGHQELIFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSALMESGLW  358
            W  +G++ LIF G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL+ESGLW
Sbjct  300  W--AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  359  AQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYAPPYICGK  415
            ++DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD  R  + +P+  +K
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

294) intB in NC_021505


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  370 bits (1389),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 220/416 (53%), Positives = 310/416 (75%), Gaps = 4/416 (0%)

Query  7    PLSDLKCRTAKPRDRAYKLFDGGGMYLYVAPCGSKTWRLRYFKPNGKEGTLIIGKYPIVS  66
            +L+D K R+AKP D+AYKL DG+GM+L V P GS+ WRLRY +  GKE TL +G YP VS
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LAVARIKRDEAKALLLDNLDPMEEKQKAKIAAQRASLLFETVALEWHVEMSRRWTEGHAK  126
            L+ AR KRDEA+ L+ + +DP E+K+  K+ ++   L FE +A  WH   +++W+++H+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPD-LQLSFEHIARRWHAS-NKQWAQSHSD  118

Query  127  TVLSRLRAHVFPLIGQRPIAELDTHDLLEVTQRIKDRGTMDVALRVQNYLSTIMRGAKRA  186
             VL  L +HVFP+IG+R I+ L+T DLL   +    +   ++A R+Q+ +S++MR A ++
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  RQITQNPALDLAGSIQAPRTVHRPALSLNRLPELLDRIDNYTGRELTRLAVLLTLHVFVR  246
              I  NPALD+AG++ + +  HRPAL L+RLPELL RI++Y G+ +T+LAV+L L VF+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  SSELRFARWDEFDLQRAMWEIPDTRKPIEGVRYSTRGTKMSGDIQIVPLSPQVIEILERL  306
            SSELR+ARW E+D++ AMW IP  R P+ GV++S RG+KM    ++VPLS QV+ IL  L
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAEL  297

Query  307  RSLNRFSELVLPGDHRYWKPLSENTVNQVLRNMGYDTTKDVCGHGFRTMACSALLESGLW  366
            ++    + L++ G H  +KP+SENTVN+ LR MGYDTT+DVCGHGFR+MACSAL+ESGLW
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  367  TDAAIERQMSHQERNRVRAAYIHKAQFLEQRRLIMAWWSNYIDANRSGRITPHEFA  422
            +  A+ERQMSHQERN VRAAYIHKA+ LE+RRL++ WW++++DANR   I+P E+A
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

295) Rahaq2_1748 in NC_016818


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  370 bits (1390),  Expect = 8e-104, Method: Compositional matrix adjust.
 Identities = 211/415 (51%), Positives = 325/415 (79%), Gaps = 1/415 (0%)

Query  1    MSLNDSKIRNLKPSEKPFKISDSHGLYLLVNPGGSRLWYLKYRIDGKESRLGLGAYPDVS  60
            M+L D+KIR  KP++K++K++D+ G++LLV+P GSR W L+YRI GKE  L+LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQQRDGIRKLLAQNINPAQQRSAERATSSPEKTFKYVALDWHKSNRTWSENHASRL  120
            L++AR +RD  RKL+++ ++P +Q+ A +  +  + +F  +A  WH SN+ W+++H+ ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEVAARTRQHMCNIMRHAIHQDL  180
            L S++ H+FP IG+  ++ L+  +++  +++ E K + E+A+R +Q++  +MR A++ ++
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IKNNPAANLEGIIAPPVKRHYpalplerlpellarIEDYQQGREltrlavlltlhlFIRS  240
            I+ NPA ++ G ++   ++H PAL L RLPELL+RI  Y+ G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFACWSEIDFKNRIWTIPATREAIPGVRYSERGAKMRTPHIVPLSRQSIAILKQIRE  300
            SELR+A WSEID+ N +WTIPA RE++PGV++S+RG+KMRTPH+VPLS+Q +AIL +++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGHRVLIFPGDHNPYKPMCENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLWAQ  360
             +G+  LIF G H+P KP+ ENTVNKALR+M YDT +++CGHG+RAMACSAL+ESGLW++
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCPKQYVPPYICGK  415
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD    ++++P+  +K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

296) PputW619_4935 in NC_010501


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  366 bits (1375),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 214/417 (52%), Positives = 306/417 (74%), Gaps = 4/417 (0%)

Query  7    PLTDNACRTAKAREREYKLFDGDGLYLLVKPNGRKGWRLRYVKPDGREGLTSLGNYPVVG  66
            +LTD   R+AK+ ++ YKL DG G++LLV PNG + WRLRY +  G+E   +LG YP V+
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LADARHKRFELKQQLANGIDPIQSKQQAKVQAVINGRTFESVALDWYAGMVPKWAPGHAK  126
            L++AR KR E ++ +++G+DP + K+  KV + ++  +FE +A  W A+   +WA +H+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHAS-NKQWAQSHSD  118

Query  127  TVLSRLKTHVFPLLGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRL  186
             VL  L THVFP++G R I  L+T DL+ P+ A   +   ++A R+++ + ++MR A + 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  RLITANPAHDLDGSIKTPRVTHRPALPLSRLPELQARIDGYKGRPLTRLTVMLSLHVFVR  246
             +I  NPA D+ G++ T +  HRPAL LSRLPEL +RI++YKG+P+T+L+VML+L VF+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  SSELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQI  306
            SSELR+ARW+E+D+  ++W IP  R +L GV FS RG+KM    H+VPLS Q VA+L ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAEL  297

Query  307  HAITGKFELVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLW  366
            ++ +G   L+F+G   P+KP+SENTVN ALR MGYDT  D+CGHGFRAMACSAL+ESGLW
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  367  SETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAR  423
            S  A+ERQMSH+ERN VRAAY HKAE LEERR+++ WW+ FL+ANRE  ++P E+A+
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

297) intB in NC_021505


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  366 bits (1374),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 216/417 (52%), Positives = 304/417 (73%), Gaps = 4/417 (0%)

Query  7    PLTDTACRTAKPREREYKLFDGDGLYLLVQPNGRKGWRLRYVKPDGREGLTALGSYPVVG  66
            +LTD+  R+AKP ++ YKL DG G++LLV+PNG + WRLRY +  G+E   ALG YP V+
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LGDARRKRFEIKQQLANGIDPIQYKQQTKTQAVINGRTFESVALDWYASMVPKWAPGHAK  126
            L++AR KR E ++ +++G+DP + K+  K  + ++  +FE +A  W AS   +WA +H+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHAS-NKQWAQSHSD  118

Query  127  TVLSRLKTHVFPLIGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRL  186
             VL  L THVFP+IG R I  L+T DL+ P+ A   +   ++A R+++ + ++MR A + 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  RLITANPAHDLDGSIKTPRVTHRPALPLSRLPGLLACIEDYRGRPLTRLTVMLSLHVFVR  246
             +I  NPA D+ G++ T +  HRPAL LSRLP LL+ I  Y+G+P+T+L+VML+L VF+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  SSELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQI  306
            SSELR+ARW+E+D+  ++W IP  R +L GV FS RG+KM    H+VPLS Q VA+L ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAEL  297

Query  307  HAITGKFELVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLW  366
            ++ +G   L+F+G   P+KP+SENTVN ALR MGYDT  D+CGHGFRAMACSAL+ESGLW
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  367  SETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAK  423
            S  A+ERQMSH+ERN VRAAY HKAE LEERR+++ WW+ FL+ANRE  ++P E+AK
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

298) Pfl01_3064 in NC_007492


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  365 bits (1370),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 212/417 (51%), Positives = 310/417 (75%), Gaps = 4/417 (0%)

Query  7    PLTDAACRLARPTDRPYKLFDGDGLYLLIQPNGRKGWRLRYVKPDGREGLTSLGSYPVIG  66
            +LTDA  R A+PTD++YKL DG G++LL++PNG + WRLRY +  G+E   +LG YP ++
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LAEARQKRLDAKRMLADGIDPVESKRKAKTEDAVNGRTFESVALDWHKNMSARWTLDHSK  126
            L+EAR KR +A++++++G+DP E KR  K    ++  +FE +A  WH + + +W+  HS 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHAS-NKQWAQSHSD  118

Query  127  NVFNRLNNYVFPFIGARAIADLDTYDLMQPLEAIRKRGTIDVALRVQRYLQSIMREAKRL  186
            +V++ L+  VFPFIG R I+ L+T DL+ P+ A   +   ++A R+Q+ + ++MR A + 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  RLIPMNPAYDLQGLIKAPRVSHRPTLPLSRLPELLARIYAYKGRELTRLTLMLSLHVFVR  246
             +I  NPA D+ G + + +  HRP+L LSRLPELL+RI +YKG+ +T+L++ML+L VF+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  SSELRFARWCEFDLKRCVWEIPDTRPELEDVRHSTRGTKMAGDVHLVPLSPQVVAVLEQI  306
            SSELR+ARW E+D+   +W IP  R  L +V+ S RG+KM    HLVPLS QVVA+L ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAEL  297

Query  307  HTLTGAFDLVFAGDARAWKPMSENTVNKALRTMGYDTKTEICGHGFRSMACSALIESGLW  366
            +T +G  +L+F+G   ++KP+SENTVNKALR MGYDT  ++CGHGFR+MACSALIESGLW
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  367  SETAIERQMSHRERNSVRAAYIHKAEFIEERRLIMNWWSRYLAANLQEHVTPHEFAN  423
            S  A+ERQMSH+ERN+VRAAYIHKAE +EERRL+++WW+ +L AN +  ++P E+A+
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

299) KPK_1799 in NC_011283


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  363 bits (1362),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 224/415 (54%), Positives = 316/415 (77%), Gaps = 1/415 (0%)

Query  1    MSLNDSKIRKLKPSAKPFKISDSHGLYLLIKPGGSRHWYLKYRINGKESRIALGAYPAIS  60
            M+L D+KIR  KP+ K++K++D+ G++LL+ P GSR W L+YRI GKE  +ALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARHQREGIRKMLALNINPAQQRAVERGAYTPEKVFKIVALAWHKSNKKWSQNTADRL  120
            LS+AR +R+  RK+++  ++P +Q+   +     +  F  +A  WH SNK+W+Q+ +D++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LASLNNHVFPVIGHLSISELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQGL  180
            L SL+ HVFP IG+  I+ L+  +++  +++ E K + E+ASR +Q++S +MR AV+ G+
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDSNPAANLDGVTAPPVRRHYPAlplerlpellkrIEAYHQGREltrlavlltlhlFIRS  240
            I  NPA ++ G  +   R+H PAL L RLPELL RI +Y +G+ +T+LAV+L L +FIRS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRS  239

Query  241  SELRFARWSEIDFRNRTWTIPATREAIAGVRYSGRGAKMRTAHIVPLSEQAIAILKRIKD  300
            SELR+ARWSEID+ N  WTIPA RE+++GV++S RG+KMRT+H+VPLS Q +AIL  ++ 
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  ISGDGELVFPGDHNPYKPMCENTVNKALRLMGYDTKQDICGHGFRAMACSALMESGLWSQ  360
             +G+  L+F G H+P KP+ ENTVNKALR+MGYDT QD+CGHGFRAMACSAL+ESGLWS+
Sbjct  300  WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSR  359

Query  361  DAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLAMNRKVFISPYLFEK  415
            DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+L  NR  FISP+ + K
Sbjct  360  DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

300) L483_01150 in NC_021491


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 211/417 (51%), Positives = 306/417 (74%), Gaps = 4/417 (0%)

Query  7    PLTDNACRTAKAREREYKLFDGDGLYLLVKPNGRKGWRVRYLKPDGREGLTSLGNYPVVG  66
            +LTD   R+AK+ ++ YKL DG G++LLV PNG + WR+RY +  G+E   +LG YP V+
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LADARQKRFELKQQLANGIDPIQSKQQAKVQAVINGRTFESVALDWYAGMVPKWAPGHAK  126
            L++AR KR E ++ +++G+DP + K+  KV + ++  +FE +A  W A+   +WA +H+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHAS-NKQWAQSHSD  118

Query  127  TVLSRLKTHVFPLLGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRL  186
             VL  L THVFP++G R I  L+T DL+ P+ A   +   ++A R+++ + ++MR A + 
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  RLITTNPAHDLDGSIRAPRVTHRPALPLSRLPELQARIDVYKGRPLTRLTVMLSLHVFVR  246
             +I  NPA D+ G++ + +  HRPAL LSRLPEL +RI+ YKG+P+T+L+VML+L VF+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  SSELRFARWNEFDLNRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVGLLEQI  306
            SSELR+ARW+E+D++ ++W IP  R +L GV FS RG+KM    H+VPLS Q V++L ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAEL  297

Query  307  HAITGKFDLVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLW  366
            ++ +G  +L+F+G   P+KP+SENTVN ALR MGYDT  D+CGHGFRAMACSAL+ESGLW
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  367  LETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAK  423
               A+ERQMSH+ERN VRAAY HKAE LEERR+++ WW+ FL+ANRE  ++P E+AK
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

301) PCC21_004050 in NC_018525


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  346 bits (1301),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 214/419 (52%), Positives = 315/419 (76%), Gaps = 6/419 (1%)

Query  1    MKLNARQVETAKPKEKTYKMADGGDLYLEITTRGSKYWRMKYRRPIDKKEDRLAFGVWPT  60
            M L   ++ +AKP +K+YK++DG++++L +   GS+YWR++YR  I  KE  LA+GV P 
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPE  58

Query  61   VTladarakrdeakkllVQGIDPKAEQKEVQAESEGAYTFETVARQ----QQALGDYHRS  116
            V+L++AR+KRDEA+KL+ +G+DP  +++  +  ++   +FE +AR+    ++  ++ H  
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSD  118

Query  117  RVIRYLEMYISPEIGASDIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRITAIMRYAVQN  176
            +V++ LE  + P IG  DI  L+T++LL P++A +A    ++A RLQQRI+A+MRYAVQ+
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  177  DYIESNPAGDMAGALTTTKARHYPALPSVRFPEFLSRLAAYRGRLLTRCAVELMLLTFVR  236
            + I  NPA DMAGALTT K +H PAL   R+PE+LSR+++Y+G+ +T+ AV L LL F+R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  237  SSELRFAQWREFDFDSAEWRIPAQREEIEGVRYSYRGMKMKEEHVVPLSNQALAVLAKLH  296
            SSELR+A+W E+D+D+A W IPA+RE + GV++S RG KM+  H+VPLS+Q +A+LA L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  297  ALSGDNPRLFPSDHNPEKVMSENTVNSALRTMGYDTKTEVCGHGFRTIARGALGESGLWS  356
            + +G+N  +F + H+P K +SENTVN ALR MGYDT  +VCGHGFR++A +AL ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  357  DDAIERQLSHSERNNVRAAYIHTSEYLDERRLMVQWWADYLDIIQYEHITPYEYARVRN  415
             DA+ERQ+SH ERN VRAAYIH +E L+ERRLM+QWWAD+LD  +   I+P+EYA++ N
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINN  417

302) int in NC_009648


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  344 bits (1293),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 204/349 (59%), Positives = 277/349 (80%), Gaps = 3/349 (0%)

Query  2    REEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVTSNVNWSAEHKKRVLRYFELY  61
            R+EA+ L+  G+DP  +++A ++    + +FE +AR W +SN +W+  H  +VL+ +E  
Sbjct  68   RDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETH  127

Query  62   VFPTNGSCDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGIIDHNPAS  121
            VFP  G+ DIT ++  DLL+P++  E     ++ASRLQQR + VMRYAVQ+GII  NPA 
Sbjct  128  VFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPAL  187

Query  122  DLTGAVSTPKVRHHPALDLNLIPDFLERVDDFKGRkltqlavklalllFIRSSELRFARW  181
            D++GA++T K +H+PALDL+ +P++L R++ +KG+ +TQLAV L LL+FIRSSELR+ARW
Sbjct  188  DMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARW  247

Query  182  DEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHKVRQHCRPGTE-  240
             EID+ NAMWTIPAEREP+PGVK+S RG+KM++PHLVPLS+Q + +L  +  + ++G + 
Sbjct  248  SEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL--QTWAGENG  305

Query  241  LVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWSSDAVERQ  300
            L+F G H+ RKP+SENT+NKALRVMGYDT +DVCGHGFR+MACSAL+ESGLWS DAVERQ
Sbjct  306  LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQ  365

Query  301  MSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDANRFRHVVPYGFKK  349
            MSHQER+ VRAAYIHKA+HLEERR M+QWWAD+LDANR R + P+ + K
Sbjct  366  MSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

303) SBOV45841 in NC_022241


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  342 bits (1283),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 203/360 (57%), Positives = 282/360 (79%), Gaps = 3/360 (0%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYRFVNKEKKLALGPYPLLT  60
            MALTD  I  AKP +K+YKL+D+ G++LLV+PNGS+ W ++YR++ KEK LALG YP ++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARRMREEAQLLLISGIDPSAHRKAERLAITPEHTFESVAREWVISNVNWSAEHKKRV  120
            L++AR  R+EA+ L+  G+DP  +++A ++    + +FE +AR W  SN +W+  H  +V
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  121  LRYFELYVFPTNGSCDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQNGI  180
            L+ +E  VFP  G+ DIT ++  DLL+P++  E     ++ASRLQQR + VMRYAVQ+GI
Sbjct  121  LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI  180

Query  181  IDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLDRIDDYKGRqltqlavklalllFIRSS  240
            I  NPA D++GA++T K +H+PALDL+ +P++L RI+ YKG+ +TQLAV L LL+FIRSS
Sbjct  181  IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRFARWDEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHEVRQH  300
            ELR+ARW EID+ NAMWTIPAEREP+PGVK+S RG+KM++PHLVPLS+Q + +L E+  +
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL--Q  298

Query  301  CRPGTE-LVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGLWS  359
             ++G + L+F G H+ RKP+SENT+NKALRVMGYDT +DVCGHGFR+MACSAL+ESGLWS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

304) UMNK88_5213 in NC_017641


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  335 bits (1258),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 193/304 (64%), Positives = 259/304 (86%), Gaps = 1/304 (0%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D K+R+AKP  KAYKLTDG GM LLVHPNGS+YWRLRYR+ GKEK LALG YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR  120
            L++AR++RDEARKL+++GVDP E+K+A KV  + + ++FE +AR WHASN++W+ SHS +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHASNKQWAQSHSDK  119

Query  121  VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG  180
            VLKSLE ++F  IG+R+I+ L+T DLL+P++A E+    E+A+RLQQR +A+MR+AVQSG
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS  240
            +I YNPA ++AGA++T KRQHR+AL+L+R+PELL RI+ Y G+P+T+LAV L LLVFIRS
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRS  239

Query  241  SELHFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS  300
            SEL++ARWSE+D++ AMWTIP+ERE L GVK S+RGSKMRTPHLVPLS+Q ++IL  +++
Sbjct  240  SELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQT  299

Query  301  MSGN  304
             +G+
Sbjct  300  WAGE  303

305) Q7S_09690 in NC_017047


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  335 bits (1257),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 188/363 (52%), Positives = 279/363 (77%), Gaps = 1/363 (0%)

Query  1    MGAYPDVSLADARQQRDGIRKLLAQNINPAQLRSAEKATVLPGETFKAVALSWHKSNRSW  60
            +G YP+VSL++AR +RD  RKL+++ ++P + + A K       +F  +A  WH SN+ W
Sbjct  53   LGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQW  112

Query  61   SDNHAARLLASMNNHIFPIIGHLPATELKTRHFIDLLKGIEQKGLLEVAARTRQHMCNIM  120
            +++H+ ++L S++ H+FP+IG+   T L+T +++  +++ E K + E+A+R +Q++  +M
Sbjct  113  AQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVM  172

Query  121  RHAVHQELIEHNPAANLDGIIAPPVKRHYPAlpleqlpellTRIKDYKQGRELTRLAVSL  180
            R AV+  +I  NPA ++ G ++   ++H PAL L +LPELL+RI  YK G+ +T+LAV L
Sbjct  173  RYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYK-GQPVTQLAVML  231

Query  181  TLHLFIRSSELRFARWSEIDFKNRIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSGQSI  240
             L +FIRSSELR+ARWSEID+ N +WTIPA RE++PGV++S RG+KMRTPH+VPLS Q +
Sbjct  232  NLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVV  291

Query  241  AILKQIREISGHQVLVFPGDHNPYKPMCENTVNKALRLMGYDTKDEICGHGFRAMACSAL  300
            AIL +++  +G++ L+F G H+P KP+ ENTVNKALR+MGYDT +++CGHGFRAMACSAL
Sbjct  292  AILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  301  MESGLWAQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYLDMCRKAYVPPYI  360
            +ESGLW++DAVERQMSHQERN+VRAAYIHKAE L+ R+ M+QWW+D+LD  R  +++P+ 
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFE  411

Query  361  CGK  363
             +K
Sbjct  412  YAK  414

306) BJAB0715_03144 in NC_021733


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  322 bits (1206),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 298/418 (72%), Gaps = 5/418 (1%)

Query  21   IPLSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGKDGLMTLGNFPAL  80
            ++L+D+K  +AKP +K Y L DG G++L+++ +GS+ WR++Y R  GK+  ++LG +P +
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEV  59

Query  81   SLKAARDKRRELETLLANGIDPIEYSEIQKAKLDNKYNFESIAREWHTAYKNTGRWGTET  140
            SL  AR KR E   L+++G+DP E    +K   D + +FE IAR WH++ K+   W+   
Sbjct  60   SLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ---WAQSH  116

Query  141  AERALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRLTSIFAFAM  200
            +++ LK++E  VFP +G++ I +++  +L+  +++ E     E+  + +QR++++  +A+
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  201  SKGFIESNPAYGLQDIFILSKKTKHHpqlplerlpelqAKLASDTGHPLTRLCVEFALHT  260
              G+I  NPA ++ + +   K+ +H+P L L RLPEL ++++S  G+P+T+L V + L  
Sbjct  177  QSGIIRYNPALDMAGALTTVKR-QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  261  FARSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKAPHLIPLSNQALAIIK  320
            F RSSE+R+ARW E+D++NA+WTIP+ R+ + G K+SHRG+KM++PHL+PLS+Q +AI+ 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  321  EIFKYSGHTQNVFPKNGDPHGFMSESTINKTLRRLGYDTNIEVCGHGFRGMACAALIQSK  380
            E+   +G+   +F    DP+  +SE+T+NK+LR +GYDT  +VCGHGFR+MAC+ALI+S 
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  381  LFQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLDATKETSISPYDYT  438
            L  +DAVE+QMSHQERN VR AY HKAE LEER+ ML+WW+ +LDA +E  ISP++Y+
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYA  413

307) PSF113_0326 in NC_016830


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  312 bits (1168),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 180/344 (53%), Positives = 255/344 (75%), Gaps = 3/344 (0%)

Query  1    MLADGVDPIETKHQAKAEAVIKGRTFESVALDWHTEMSAKWAPGHSKTVMSRLKTHVFPL  60
            ++++GVDP E K+  K  + ++  +FE +A  WH+  + +WA +HS  V+  L THVFP+
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHAS-NKQWAQSHSDKVLKSLETHVFPF  131

Query  61   IGASAIVDLDTHDLMQPLEAIKKRGTIDVALRVQNYLQSIMREAKRLRLITANPAYDLEG  120
            IG   I  L+T DL+ P+ A   +   ++A R+Q+ + ++MR A +  +I  NPA D+ G
Sbjct  132  IGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAG  191

Query  121  LIKAPRVVHRPALPLSRLPELQERIDTYKGRALTRLTVMLSLHVFVRSSELRFARWSEFD  180
             + + +  HRPAL LSRLPEL  RI++YKG+++T+L+VML+L VF+RSSELR+ARWSE+D
Sbjct  192  ALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEID  251

Query  181  LKRGTWEIPDTRPALEGVPFSTRGTKMAGDIHLVPLSPQAVALLEQIHALTGKFDLVFAG  240
            +  + W IP  R +L GV FS RG+KM    HLVPLS Q VA+L ++++ +G  +L+F+G
Sbjct  252  IDNAMWTIPAEREPLPGVKFSHRGSKMRTP-HLVPLSKQVVAILAELQTWAGENGLIFTG  310

Query  241  DAKPWKPMSENTVNNALRTMGYDTKTDICGHGFRSMACSALIESGLWSETAIERQMSHKE  300
               P+KP+SENTVN+ALR MGYDT  D+CGHGFR+MACSALIESGLWS  A+ERQMSH+E
Sbjct  311  AHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQE  370

Query  301  RNNVRAAYIHKAEFIEERRLIMNWWSRYLEANREEHVTPHEFAN  344
            RN VRAAYIHKAE +EERRL+++WW+ +L+ANRE  ++P E+A+
Sbjct  371  RNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

308) EC042_2207 in NC_017626


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  307 bits (1151),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 185/342 (55%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

309) ETEC_2075 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  307 bits (1151),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 184/342 (54%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDTVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++D+VERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

310) ECD_03516 in NC_012971


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

311) ybl160 in NC_012892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

312) ECBD_0066 in NC_012947


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

313) ECB_03516 in NC_012967


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

314) intC in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1143),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

315) O3M_00580 in NC_018650


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

316) O3O_25120 in NC_018661


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

317) O3K_00550 in NC_018658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

318) ECIAI39_4188 in NC_011750


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1142),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

319) CE10_4227 in NC_017646


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  305 bits (1142),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 278/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

320) ECSF_1824 in NC_013654


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 181/311 (59%), Positives = 248/311 (80%), Gaps = 1/311 (0%)

Query  5    WHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKDLLEVASRT  64
            WH SN++W+Q+ +D++L SL+ H+FP IGN  ++ L+  +++  +++ E K++ E+ASR 
Sbjct  105  WHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRL  164

Query  65   RQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPAlplerlpellerIGAYHQGRE  124
            +Q++S +MR AV+  +I  NPA +++G  T   R+H PAL L RLPELL RIG+Y +G+ 
Sbjct  165  QQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY-KGQP  223

Query  125  LTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHI  184
            +T+ AV+L L VFIRSSELR+ARWSEID+ N +WTIPA REP+ GV++S RG+KMR PH+
Sbjct  224  VTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHL  283

Query  185  VPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGF  244
            VPLS Q +AIL +++  +G+N LIF G H+P KP+ ENTVNKALRVMGYDT +D+CGHGF
Sbjct  284  VPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGF  343

Query  245  RAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKTMMQWWSDYLEACR  304
            RAMACSAL+ESGLW++DAVERQMSHQERN VR AYIHKAEHLE R+ M+QWW+D+L+A R
Sbjct  344  RAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

Query  305  ESYAPPYTIGK  315
            E + +P+  +K
Sbjct  404  ERFISPFEYAK  414

321) ECABU_c41260 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +K+YKL+D++GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV++++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEKGFN  346
            +  + ++ L+F G +DPRKPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

322) intC in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +K+YKL+D++GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV++++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEKGFN  346
            +  + ++ L+F G +DPRKPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

323) intC in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +K+YKL+D++GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV++++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEKGFN  346
            +  + ++ L+F G +DPRKPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIGS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

324) SSON_3744 in NC_007384


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  304 bits (1140),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 277/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAGAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L+ AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

325) intC in NC_008258


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  303 bits (1137),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

326) ECABU_c22350 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  302 bits (1132),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 186/342 (55%), Positives = 263/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

327) LF82_294 in NC_011993


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  302 bits (1132),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 186/342 (55%), Positives = 263/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

328) ETEC_3899 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  302 bits (1133),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 277/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVKTAKPKEKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +K+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGNPGVAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARK+++ G +P   K+  K+  ++ L  +FE IAR WH S+  +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLACALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIALFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPITKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

329) intL in NC_002655


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  288
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

330) ECs4534 in NC_002695


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  288
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

331) intL in NC_013008


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  288
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

332) ECO55CA74_21080 in NC_017656


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  288
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

333) CDCO157_4272 in NC_017906


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  288
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

334) ECP_3765 in NC_008253


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  301 bits (1128),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 164/407 (41%), Positives = 277/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVKTVKPKDKPYKLADGSGMYLLINTNGSKYWRMKYRFAGKEKMLSLGVYPDVT  60
            MALTD K+++ KP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L+LGVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKRSEARKILAAGGDPGEVKKEEKIALQMSLKNTFEAIAREWHRSKADRWSLRYR  120
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE IAR WH +   +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWH-ASNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYLGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP++G+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFAHWEDINLEKKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL  288
            R+ ELR+A+W +I++++ +W IPAE              KM+ PH+VPLS QV++++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHYPLVFIGRNDPRKPISKESINQVIELIGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  + +  L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

335) GEM_3075 in NC_018513


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 186/404 (47%), Positives = 290/404 (72%), Gaps = 20/404 (4%)

Query  1    MSLTDTAVRNLKPSDKPYKLADGGGMYLHVTPNGGKYWRLAFRLHGKQKIYALGVYPQVS  60
            M+LTD+ +R  KP+DK+YKL+DG+GM+L V PNG++YWRL +R+ GK+K  ALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARQMRDEAKKLIKQGIDPVIERKQTVRRRSEEQATTFELIAREWHKTKRSAWTESHA  120
            L+EAR  RDEA+KLI +G+DP  +++   ++   +   +FE IAR WH +++  W++SH+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKR--AKKVVPDLQLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  KKIMNSLEADIFPRLGDRPIGSISAPDLLMALRVIEKRGALEIAGRVLQRCNAVFRYAVA  180
             K+++SLE+++FP +G+R I ++++PDLL+++R  E +   EIA+R+ QR +AV RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRIVANPAAELRGALKTPERKHHAALAHDELPEFLAKLAGYDGDPQTRLGLQLMVHTFV  240
            +G I  NPA ++ GAL T  R+H++AL    LPE+L+++++Y G+P T+L++ L +  F+
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRAASWAEFNLELSEWRIPAER------------MKMREEHIVPLSKQAVALLRQL  288
            R++ELR A W+E++++ + W IPAER             KMR  H+VPLSKQ VA+L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QAVGAGSDLVFPSGNGRRNKWISENTLLYALYRLGYHSR--ATGHGFRATASTILNEMGF  346
            Q+ ++ ++L+F ++++ R+  ISENT+  AL  +GY++     GHGFRA A + L E G+
Sbjct  298  QTWAGENGLIFTGAHDPRKP-ISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  -HPDWIERQLAHAERNKVRAAY-NRALYLAERRQMMQVWSDYLD  388
               D +ERQ++H ERN VRAAY ++A  L ERR M+Q W+D+LD
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

336) ECP_1936 in NC_008253


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  300 bits (1124),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 184/342 (54%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++  SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PA  L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

337) c2418 in NC_004431


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  300 bits (1124),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 184/342 (54%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++  SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PA  L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

338) i14_2235 in NC_017652


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  300 bits (1124),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 184/342 (54%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++  SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PA  L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

339) i02_2235 in NC_017651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  300 bits (1124),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 184/342 (54%), Positives = 261/342 (77%), Gaps = 1/342 (0%)

Query  1    MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++  SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDllkgieekglleVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++  +++ E K + E+ASR +Q++S +MR AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPApplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PA  L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV++S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK  342
             VR AYIHKAEHLE R+ M+QWW+D+L+A RE + +P+  +K
Sbjct  373  GVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

340) ECH74115_5032 in NC_011353


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  84
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  85   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  144
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  145  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  204
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  205  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  264
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  265  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  312
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  313  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  370
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  371  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  412
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

341) intL in NC_013941


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  84
            MALTD K+++AKP +++YKL+DG+GM+LL+++NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  85   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  144
            L++AR KR EARK+++ G DP E K+  K+  ++ L  +FE +AR WH ++ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  145  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  204
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  205  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  264
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  265  RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL  312
            R+ ELR+A+W +ID++  +W IPAE              KM+ PH+VP S QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  313  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  370
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  371  SAW----IEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYIDS  412
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

342) SFxv_4026 in NC_017328


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  298 bits (1116),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 165/410 (41%), Positives = 273/410 (67%), Gaps = 25/410 (6%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ D K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+L
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    D
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHSD  118

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
             ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  251  TQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQLE  298
            + ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  299  PISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFNS  356
              + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+  
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL--  356

Query  357  AW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  401
             W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  -WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

343) S4835 in NC_004741


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  298 bits (1116),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 165/410 (41%), Positives = 273/410 (67%), Gaps = 25/410 (6%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ D K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+L
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    D
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHSD  118

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
             ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  251  TQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQLE  298
            + ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  299  PISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFNS  356
              + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+  
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL--  356

Query  357  AW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  401
             W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  -WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

344) SF3698 in NC_004337


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  298 bits (1116),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 165/410 (41%), Positives = 273/410 (67%), Gaps = 25/410 (6%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ D K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+L
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    D
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHSD  118

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
             ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  251  TQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQLE  298
            + ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  299  PISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTILHEQGFNS  356
              + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L E G+  
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL--  356

Query  357  AW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDSLSSR  401
             W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+   R
Sbjct  357  -WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

345) Q7A_2891 in NC_017857


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  291 bits (1089),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 172/401 (43%), Positives = 271/401 (68%), Gaps = 17/401 (4%)

Query  2    LTDVKIKALKPKDKLYAVSDEKGLYIEVSTTGGKWWRFKFRFDGKQKRLSVGTYPDVGLK  61
            LTD KI+A KP DK Y ++D  G+++ V   G++ WR+++R+ GK+K L++G YP+V+L 
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   QAREQRDELRKQIANGVDPSDIRKAEKQLNAGQLSFEFVAREWHQKFRHRWSEKYALNTI  121
            +AR +RDE RK I++GVDP + ++A K +   QLSFE +AR WH   ++ W++  + + +
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVL  121

Query  122  SRLEREVFPFIGSKNINDIKAPELLAVLRRMESRGILETAHRVHQKCGQIFRYAVATGRA  181
              LE +VFPFIG+++I  +++P+LL  +R  E++ I E A R++Q+ + + RYAV +G  
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  182  ERDPSTDLKGALPPVKVKHHASIIEPKQIGGLLRAINGYSGSFVTLCALRLAPLVFVRPG  241
              +P+ D+ GAL  VK ++H + ++  ++  LL  I +Y G  VT  A+ L  LVF+R++
Sbjct  182  RYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  242  ELRHAEWTEFDLEKAEWRIPAEK------------MKMASVHIVPLSKQAIAVIETLKPL  289
            ELR A W+E+D+++A W IPAE+             KM + H+VPLSKQ +A++  L+  
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  290  TGSGKYLFPSIRTITRPMSENTVNGALRRLGY-TGDEMVGHGFRSMASTILNEQG-WNRD  347
            +G    +F + +   +P+SENTVN ALR +GY T +++ GHGFR+MA + L E G W+RD
Sbjct  301  AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD  360

Query  348  AIERQLAHSERDGVRAAYNY-AEYLSERKRMMQSWANYLDG  387
            A+ERQ++H ER+GVRAAY   AE L ER+ M+Q WA++LD+
Sbjct  361  AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

346) BURPS1710b_1290 in NC_007434


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  286 bits (1070),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 185/407 (46%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  1    MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  60
            M+LTD ++R AK++  +YKLTDG GMFLLV+PNG++YWRL YR+LGK+KTLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYA  120
            L+ AR KRDEAR  ++ G+DP E K+  +  +++    SFE +AR W  S++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  EKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIV  180
            +KVL+SLE +VFP IG R I+ +++P++L  VR  EA+ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCSRNPAADIDAQ-TVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMA  239
            +G    NPA D+ +  T +K+    QH + +  + +P+L+  I++Y+G+ VT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDV  287
            L F+R++E+  A WSE+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLRALNGQHRFVFYSVQG-RSHISNNTMLYALYRIGYKSR--MTGHGFRGLAATALRE  344
            LA+L++  G++ ++F + ++ R  IS+NT+  AL  +GY +   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LGF-GRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD  389
             G+ +RD VERQM+H ERN V AAY+H AE L ERR M+Q W+D LD
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

347) intB in NC_005085


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  286 bits (1070),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 186/408 (46%), Positives = 275/408 (68%), Gaps = 27/408 (6%)

Query  1    MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT  60
            M+LTD+ IR AKP +  K+ KL+DG+++FL V PNG++YWR+ YR+ GK+KTLA+GVYP 
Sbjct  1    MALTDAKIRAAKPTD--KAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPE  58

Query  61   TSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDD  120
             SL +AR KR+ ARKL++ G DP   K+ +K   +L +  SFE +AR W   +  +W++ 
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQS  115

Query  121  HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIRYA  180
            H+ ++L SL ++ FP +G+  ++ L +P +L  +R  E +   E A R+ QRISAV+RYA
Sbjct  116  HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA  175

Query  181  IQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLA---AEPLYIPTRIAMHLL  237
            +Q+G    NPA D++GA+ + K +HRPAL  + L E+  R++   ++P+   T++A+ L 
Sbjct  176  VQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPV---TQLAVMLN  232

Query  238  MLTFVRPGELRAARWEEFDEERAEWRIPAER------------MKMREPHLVPLSRQALE  285
            +L F+R++ELR ARW E+D + A W IPAER             KMR PHLVPLS+Q + 
Sbjct  233  LLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVA  292

Query  286  LLKELRPLTGKSALLFPAVTDLKKPMSENTLGYAMGRMGYKGT--ATPHGFRALASTVLN  343
            +L EL+  +G ++L+F +  D +KP+SENT+  A+  MGY  T     HGFRA+A + L 
Sbjct  293  ILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  344  EEGF-DPDIIEKQLAHAERNKVRAAY-HRAEYLEERRKMMQWWAEFLG  389
            E G+   D +E+Q++H ERN VRAAY H+AE LEERR M+QWWA+FL+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

348) ETAF_0751 in NC_017309


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  285 bits (1068),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 167/407 (42%), Positives = 274/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   ++ AAKP +KAYKL+DGAG++L V P+GSRYWR++YR+ GKEK +A+GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEGYT  120
            L++AR+ RDEA+K ++EG+DP   K+  K+V D+QL  +F+ +A  WH+++  +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDIFPYIGQQPVNEIKPLVLLHVLRRMESRGATEKAKKVRQRCSEVFRYAIV  180
              +L +++ ++FP+IG++ +  ++   LL  +R  E++   E A +++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEKLPDFFKALSSYTGSPLVVLAARLLILTGV  240
            +G   YNPA D+++A++    +H P L + +LP+++  ++SY G P+  LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQQL  288
            R++ELR A WSE+D+++A+W IPAER             KM+ PHLVPLS Q + I+ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVMSGQYPQVFPGRNDPRKTMSEASINQVFKRIGY--TGKVTGHGFRHTMSTILHEEGFN  346
            +  +G+   +F G +DPRK +SE ++N+ ++ +GY  T  V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYADYIDN  388
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW AD++D 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

349) M621_05660 in NC_021659


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  285 bits (1066),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 271/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD K+R+AKPTDK+YKLTDG GM L+VHPNGS+YWRL+YR+ GK+K LALG+YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKATVENTFKAIALEWHEYKRPNWSKGYA  120
            LSEAR +RDEA++ +++++DP EQK+  K    + ++ +F  IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R I+ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAETNPASELASALTPPKSVHYPHLLADDFPAFLQALATYSGSPITRLATKILMLTGV  240
            +G    NPA ++A+ALT  K  H P L    +P +L  +++Y G P+T+LA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRMAEWKEFDFEKRVWEVPVER------------MKMRRPHLVPLSDQVVSSLREI  288
            R+ ELR A W E+D+++ +W +P ER             KMR PHLVPLS QVV+ L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QVVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            Q  +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLDQRRVMLQWYADYMDN  388
              W    +E Q++H ++N +R++Y H A+ L++RR+MLQW AD++D 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

350) YPK_3149 in NC_010465


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  285 bits (1065),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD K+R+AKPTDK+YKLTDG GM L+VHPNGS+YWRL+YR+ GK+K LALG+YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKATVENTFKAIALEWHEYKRPNWSKGYA  120
            LSEAR +RDEA++ +++++DP EQK+  K    + ++ +F  IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R I+ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAESNPASELASALTPPKSVHYPHLLADELPAFLEALAAYSGSPITRLATKILMLTGV  240
            +G    NPA ++A+ALT  K  H P L    LP +L  +++Y G P+T+LA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRMAEWKEFDFDQRVWEVPVQR------------MKMRRPHLVPLSDQVVTALREI  288
            R+ ELR A W E+D+D+ +W +P +R             KMR PHLVPLS QVV+ L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            Q+ +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLEQRREMLQWYGEYVDG  388
              W    +E Q++H ++N +R++Y H A+ LE+RR MLQW ++++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

351) MYA_1732 in NC_017920


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  284 bits (1064),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 178/402 (45%), Positives = 268/402 (67%), Gaps = 20/402 (4%)

Query  1    MPLTDVAVRAAKPREKSYKLADGQGMYLEIMPNGSKYWRLKYRIDGKEKRMALRVYPAVT  60
            M+LTD  +RAAKP +K+YKL+DG GM+L + PNGS+YWRL+YRI GKEK +AL VYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LLAARKARDEIKDQLRAGLDPSHEKKRVKAQRSLDRENSFEPIAREWHQQKKGAWSERHA  120
            L  AR  RDE +  +  G+DP ++K+  K    L  + SFE IAR WH  +K  W++ H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNK-QWAQSHS  117

Query  121  DRIMKLLERELFPAIGARPIAEIMAPELLAVIRKIEARDAIELAHKTIQATSQIFRYAIA  180
            D+++K LE ++FP IG R I+ + +P+LL  +R  EA++  E+A +  Q  S + RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDSAPDLRGALKPRFVVHMRRVSEAELPELMRQISAYDGDFQTRLALQFMALTFV  240
            +G    ++A D+ GAL      H   +  + LPEL+ +I++Y G+  T+LA+ +  L F+
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTSELRFAEWTEID-EKKEWRIPPEK------------MKMRTPHIVPLSTQALEVIAKL  287
            R+SELR+A W+EID ++  W IP+E+             KMRTPH+VPLS Q + ++A L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  288  PELNGHSQFLFPSRSSSKKPMSENTILYALYRMGYHSR--MTGHGFRGLASTILNEHSF-  344
                G++ ++F +   ++KP+SENT+  AL  MGY++   + GHGFR++A + L E ++ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  345  NRDWIERQLAHSERDGVRAAYNH-AEYLPERRKMMQWWSNYL  385
            +RD +ERQ++H ER+GVRAAY H AE L ERR M+QWW+++L
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

352) Dd586_2842 in NC_013592


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  283 bits (1058),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 267/407 (66%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRSAKPMDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGVYPEIS  60
            MALTD K+R+AKP DK+YKLTDG GM L+VHPNGS+YWRL+YR+ GK+K LALGVYPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQVTNSIDPSEKKKVEKQARKVAVENTFKSVALEWHEYKRPNWSKGYA  120
            LSEAR +RDEA++ +++++DP E+K+  K    + +  +F  +A  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  EDLMEAFENDIFPDIGKRPIAEIEPLEALTTLRKLEKRGVLDKLRKVRQACKQVCTYAIV  180
            + ++ ++E ++FP IG+R I+ ++  + L  +R  E + + +   +++Q    V  YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAKTNPFAELASALTTAKSTHYPHLLADQLPAFLKALEAYSGSPITRLATRILMLTGV  240
            +G  + NP  ++A+ALTT K  H P L   +LP +L  + +Y G P+T+LA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRLAEWKEFDFDKRVWEVPVER------------MKMRRPHLVPLSDQVIEALREL  288
            R+ ELR A W E+D+D+ +W +P ER             KMR PHLVPLS QV+  L EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QMITGRYNLVFPGRNDITKPISEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEEGFN  346
            Q  +G   L+F G +D  KPISE ++N+ L+ +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQHLENRRGMLQWYADYLES  388
              W    +E Q++H ++N +R++Y H A+HLE+RR MLQW AD+L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

353) EcHS_A0329 in NC_009800


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 166/410 (41%), Positives = 277/410 (68%), Gaps = 25/410 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   ++ AAKP +KAYKL+DGAG++L V P+GSRYWR++YR+ GKEK +A+GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARALRDDAKKKLAEGIDPSLAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYA  120
            L++AR+ RD+A+K ++EG+DP   K+  K+V D+QL  +F+ +A  WH+++  +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYAIV  180
              ++ +++ ++FP+IG++ +  ++   LL  +R  E++   E A +++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV  240
            +G   YNPA D+++A++    +H P L +  LP+++  +++Y G P+  LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQQL  288
            R++ELR A WSE+D+++A+W IPAER             KM+ PHLVPLS Q + I+ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVMSGQYPLVFPGRNDPRKTMSEASINQVFKRIGY--TGRVTGHGFRHTMSTILHEEGFN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY  T  V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-ALYLEGRREMMQWYADYINANHN  391
              W    +E Q++H ++N++R++Y H A  LE RR M+QW AD+++AN++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

354) SMWW4_v1c00920 in NC_020211


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  283 bits (1058),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 268/407 (66%), Gaps = 25/407 (6%)

Query  1    MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVT  60
            M LTD +IR +KP +K+Y L DG G+ LL++ +GS+ WR+RYR  GK K +++G YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRGEARKQVANGIDPVAEKKAQKLARKLSVENSFEAISREWHTNKANRWTLAYR  120
            L++AR KR+EARK +++G+DP  +K+A+K+   L +  SFE I+R WH+++ ++W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  EEIMRTFEQDVFPYIGQRPIAEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + +++++E +VFP+IG+R I+ ++  +LL  +R  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTGV  240
            +G   YNPA D+A+AL+  K++H+P L    LP ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQEMRFATWEEIDFERGIWEIPAER------------MKMRRPHIVPLSTQAVELLKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS Q V +L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPITGHYPYIFIGRNNRRKPISKESVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGFD  346
            Q  +G+   IF G ++ RKPIS ++VN+ + ++GY       GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNGIRGTYNH-AQYLEKRRVMLQWYADFISG  388
              W    +E Q++H ++NG+R++Y H A+ LE RR+MLQW ADF+ +
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

355) APECO1_1051 in NC_008563


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 175/320 (55%), Positives = 244/320 (77%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIHKAEHLE R+ M+
Sbjct  373  GVRAAYIHKAEHLEERRLML  392

356) intA_2 in NC_022370


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 175/320 (55%), Positives = 244/320 (77%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIHKAEHLE R+ M+
Sbjct  373  GVRAAYIHKAEHLEERRLML  392

357) UM146_07320 in NC_017632


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 175/320 (55%), Positives = 244/320 (77%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIHKAEHLE R+ M+
Sbjct  373  GVRAAYIHKAEHLEERRLML  392

358) UTI89_C2177 in NC_007946


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 175/320 (55%), Positives = 244/320 (77%), Gaps = 1/320 (0%)

Query  1    MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG  60
            +++  ++P +Q+ A +     +  F ++A  WH SN++W+Q+ +D++L SL+ H+FP IG
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIG  133

Query  61   NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT  120
            N  ++ L+  +++   ++ E K + E+ASR +Q++S ++R AV+  +I  NPA +++G  
Sbjct  134  NRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGAL  193

Query  121  TPPVRRHYPAlplerlpellerIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF  180
            T   R+H PAL L RLPELL RIG+Y +G+ +T+ AV+L L VFIRSSELR+ARWSEID+
Sbjct  194  TTVKRQHRPALDLSRLPELLSRIGSY-KGQPVTQLAVMLNLLVFIRSSELRYARWSEIDI  252

Query  181  TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH  240
             N +WTIPA REP+ GV +S RG+KMR PH+VPLS Q +AIL +++  +G+N LIF G H
Sbjct  253  DNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAH  312

Query  241  NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN  300
            +P KP+ ENTVNKALRVMGYDT +D+CGHGFRAMACSAL+ESGLW++DAVERQMSHQERN
Sbjct  313  DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERN  372

Query  301  TVRMAYIHKAEHLEARKAMM  320
             VR AYIHKAEHLE R+ M+
Sbjct  373  GVRAAYIHKAEHLEERRLML  392

359) GM21_1254 in NC_012918


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  282 bits (1056),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 174/405 (43%), Positives = 271/405 (67%), Gaps = 18/405 (4%)

Query  1    MPLTDVKVRTAKPGEKQVKLSDGDGMYLLVTPNGGKCWRLKYRFGGKEKVLALGTYPEIS  60
            M+LTD K+R+AKP +K  KL+DG GM+LLV PNG++ WRL+YR+ GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVDARQRRHEARKLLANGVDPNEIKKAQKAATITETENSFEVVAREWHQKFSPSWSGVHS  120
            L +AR +R+EARKL+++GVDP E K+A+K   + + + SFE +AR WH   +  W+  HS
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKK--VVPDLQLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  DTTLRRLQADVFPAIGARPISEIKAPDALAMLRRIESRGALETAHRIRTICGQVFRYAVA  180
            D  L+ L+++VFP IG R I+ +++PD L  +R  E++   E A R++   + V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDCTADLKGALPPCKKSHLAAITDPKAVAPLLRAIDGYQGTIPVKSALQLAAMFF  240
            +G    + + D+ GAL   K+ H +A+  ++ ++ LL  I++Y+G    + A+ L  + F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRQAEWSEIDFENALWNIPASR------------MKMKEPHIVPLASHAIAILKE  288
            +R++ELR A WSEID++NA+W IPA R             KM+ PH+VPL+ + +AIL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  289  LQALTGRSRFLFPSGRSFTRPMSNNAINAALRRMGFD-KDEMTGHGFRAMARTILDEVLQ  347
            LQ+ +G + ++F +++   +P+S+N++N ALR MG+D  +++ GHGFRAMA + L E   
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  348  FRPDFIEHQLAHAVKDPNGRAY-NRTAHLAERRKMMQTWAEYLDD  391
               D +E+Q++H  ++    AY +++ HL ERR M+Q WA++LD 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

360) Bamb_0912 in NC_008390


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  281 bits (1053),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 176/406 (44%), Positives = 273/406 (68%), Gaps = 13/406 (3%)

Query  1    MPLTDTTIRNTKPVEKPIKLFDGGGLFLLVTPAGQRYWRLKYRAAGKEKLLALGVYPEVT  60
            M+LTD+ IR +KP +K+ KL DG+G+FLLV P G RYWRL+YR  GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARRKRDEARERLAAGIDPGEAKKAEKRTVRLNAENSFEAVAREWHAKYAPTWSENHA  120
            L+ AR KRDEAR  ++ G+DP E K+A K    L  + SFE +AR WHA     W+++H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  GRILRRLEVDAFPWISGKPIADLAPPDVLDALRRVEKRGALETAHRLHANISQVCRYAVA  180
            +++L+ LE + FP I+ + I+ L  PD+L ++R  E +   E A RL+  IS V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAQRDVTADLRGALPPVQQEHMAALTDPKQVAELLRAIDGYQGTFPVMCALRLAPLLF  240
            +G  + + + D+ GAL  V+++H +AL D  +++ELL  I++Y+G      A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  QRPGELRAAEWAELDLDAGTWEIPSDR-----MKRTKQGKASGGAHIVPLSSQAVAVLGE  295
             R++ELR A W+E+D+D + W IP++R     +K + +G     +H+VPLS Q VA+L+E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  296  LHALTGNGRFLFPSVRTKDRPMSDNTINGALLRLGYN-GDTMTGHGFRAMARTILDEVLG  354
            L++ +G+  ++F + +   +P+S+NT+N AL  +GY+  + + GHGFRAMA + L E  G
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-G  355

Query  355  L-PAAIIEAQLAHAVKDPLGRAY-NRTAHLPQRREMMQRWADYLDG  398
            L +   +E Q++H  ++ +  AY +++ HL +RR M+Q+WAD+LD+
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

361) int in NC_021591


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  281 bits (1052),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 270/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD K+R+AKPTDK+YKLTDG GM L+VHPNGS+YWRL+YR+ GK+K LALG+YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKAMVENTFKAIALEWHEYKRPNWSKGYA  120
            LSEAR +RDEA++ +++++DP EQK+  K      ++ +F  IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPD--LQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R I+ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAETNPASELASALTSPKSVHYPHLLADDFPAFLQALAAYSGSPITRLATKILMLTGV  240
            +G    NPA ++A+ALT+ K  H P L    +P +L  +++Y G P+T+LA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRMAEWKEFDFEKRVWEVPVER------------MKMRRPHLVPLSDQVVSSLREI  288
            R+ ELR A W E+D+++ +W +P ER             KMR PHLVPLS QVV+ L E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QVVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            Q  +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLEQRREMLQWYGDYVDN  388
              W    +E Q++H ++N +R++Y H A+ LE+RR MLQW +D++D 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

362) AHML_14825 in NC_021290


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  280 bits (1046),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 189/417 (46%), Positives = 288/417 (70%), Gaps = 20/417 (4%)

Query  1    MPLSDTAARQAKFTGKQQKLSDEKGLFLLITSSG-KYWRLKFRFGGKEKVLALGVYPEVS  59
            M+L+D+  R AK T+K  KL+D  G+FLL+ ++G +YWRL++R+ GKEK LALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  60   lkearvkreearrllaDGIDPSLARKQSKVASRLASENSFEVIAREWHQGQLARWSPGHA  119
            L EAR KR+EAR+L+++G+DP   ++  KV + L  + SFE IAR WH ++  +W+ +H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASN-KQWAQSHS  117

Query  120  QRVIESLEADAFPELGLVPVAELTAPIMLDALRKIEARGATETAGRVLQRISSVMRYAIQ  179
            ++V+ SLE++ FP +G   ++ L +P +L ++R  EA+   E A+R+ QRIS+VMRYA+Q
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  180  TGRVSYNPAQDLKGALRATKQEHRPALPRADLPEFYRRLAAEPLNPATRLAIHLLMLTMT  239
            +G + YNPA D+ GAL + K++HRPAL  + LPE+  R+++   +P T+LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  240  RPGEVRFARWDEFDMARAEWRIPAER------------MKMRAPHIVPLSRQALAVLEEL  287
            R++E+R+ARW E+D+  A W IPAER             KMR+PH+VPLS+Q +A+L EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  288  RLISGHCELLFPSERKLTDPMSENTLSYAMGRMGYKGI--ATPHGFRALASTILNEEGF-  344
            +  +G+  L+F + +    P+SENT++ A+  MGY        HGFRA+A + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  345  DPDVIERQLAHAERNKVRAAY-HRAEYLDDRRKLLQWLADFYESQQGGNIRPMNFDR  400
              D +ERQ++H ERN VRAAY H+AE L++RR +LQW ADF ++++   I P ++ +
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAK  414

363) ETAC_13020 in NC_020796


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  280 bits (1047),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 264/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLNARQVEASKAKDKPYKLADGGGLYLLVNPNGTKYWRLKYRVAGKEKLLAVGVYPNVT  60
            M L   ++ A+K+ DK+YKL+DG+G++LLV+PNG++YWRL+YR+ GKEK LA+GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARVKREDAKRVLAAGGDPGQEKQEEKRAKVMAVTNSFEKLAREWHEHKRPTWSKGYA  120
            L++AR KR++A+++++ G DP ++K+  K    + +  SFE +AR WH  ++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DDILEYLRKDIFPYIGKRAITDIKPMDMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            D +L  L  ++FP+IG+R IT ++  D+L  +R  E + + +   + +Q    +  YAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEHNPVVDLASALKTPKQKHFPHLMADQLGEFLRALADYSGSRVTQNATRLLMLTGV  240
            +G    NP +D+A+AL T K++H P L   +L E+L  ++ Y G  VTQ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTVELRAAEWAEVDLDLSLWQIPPER------------MKMRRPHIVPLSEQALAIMQEM  288
            R+ ELR A W+E+D+D ++W IP+ER             KMR PH+VPLS Q +AI+ E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  RRISGKGKYIFPGRNDAGKPMSEASINQVIKRIGYDGK--ATGHGFRHTMSTILHEQGYN  346
            +  +G    IF G +D+ KP+SE ++N+ ++ +GYD      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----VETQLAHADKNSIRGTYNH-AQYLDGRREMLQWYADYLDA  388
              W    VE Q++H ++N++R++Y H A+ L+ RR MLQW AD+LDA
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

364) Dda3937_00938 in NC_014500


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  280 bits (1047),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 268/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVDTAKPKDKPYKLSDGGGLYLLVNPNGSRYWRLKYRVDGKEKLLALGVYPAIS  60
            M L   ++ +AKP DK+YKL+DG+G++LLV+PNGSRYWRL+YR+ GKEK LALGVYP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARGKRDEAKRGIAGGIDPNVARREEKIAREAQIKNTFQDIALEWHASKIKKWSAGYA  120
            L++AR KRDEA++ I+ G+DP   +R  K+  + Q+  +F++IA  WHAS+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGATEKAKKVRQRCGEVFRYAIV  180
              ++ +++ +VFP+IGN+ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKlvllaarllilTGV  240
            +G   YNPA D+++A+      H P L+   LPE++  ++ Y G  +  LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRAANWQEIDTENARWEIPAER------------MKMRRPHCVPLSRQAIAILDEI  288
            R++ELR A W EID +NA W IPAER             KMR PH VPLS+Q +AIL E+
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  REMTGRYPLVFPGRNDPRNTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQGYN  346
            +  +G   L+F G +DPR+ +SE ++N+ ++ +GY     V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-AQYLDGRREMLQWYADYMES  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

365) ECNA114_2439 in NC_017644


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  278 bits (1042),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 166/408 (41%), Positives = 273/408 (67%), Gaps = 25/408 (6%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR+RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARTKRDEARSMLANGINPSEARKADKIALQFAHENSFESVAREWHSSKKATWSEGYA  120
            L++ARTKRDEAR ++++G++P E ++A K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            +G  +YN A D+A AL   K QH P L  S LPE+++ +++Y+G  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAEWAEFDLDNALWEIPKER------------MKKRRPHLVPLSTQAINILKKL  288
            R+ ELR A W+E+D+DNA+W IP ER             K R PHLVPLS Q + IL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGNYSLVFPGRNDVSKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHEHGFE  346
            Q  +G+ +L+F G +D  KP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYIKDRQVMMEWYASLLNTT  389
              W    +E Q++H ++N++R++Y H A+ + +R++M++W A +L++ 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDAN  402

366) ECSF_2224 in NC_013654


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  278 bits (1042),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 166/408 (41%), Positives = 273/408 (67%), Gaps = 25/408 (6%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR+RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARTKRDEARSMLANGINPSEARKADKIALQFAHENSFESVAREWHSSKKATWSEGYA  120
            L++ARTKRDEAR ++++G++P E ++A K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            +G  +YN A D+A AL   K QH P L  S LPE+++ +++Y+G  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAEWAEFDLDNALWEIPKER------------MKKRRPHLVPLSTQAINILKKL  288
            R+ ELR A W+E+D+DNA+W IP ER             K R PHLVPLS Q + IL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGNYSLVFPGRNDVSKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHEHGFE  346
            Q  +G+ +L+F G +D  KP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYIKDRQVMMEWYASLLNTT  389
              W    +E Q++H ++N++R++Y H A+ + +R++M++W A +L++ 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDAN  402

367) A3UG_04555 in NC_018079


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  278 bits (1040),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQVDAAKPKDNPYKLADGGGLYLLIKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   ++ AAKP D++YKL+DG+G++LL+ PNG++YWRL+YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIAREIQLNNTFKDIALEWHSSKLKKWSAGYA  120
            L++AR+KR+EA++ I+ G+DP E KR  K+  ++QL  +F +IA  WH+S+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKARKVRQRCGEVFRYAIV  180
              +L +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESNHFPFLTPKELPDFFNALSGYSGSELVVLAARLLIITGL  240
            +G   YNPA D+++A+     +H P L    LP++++ +++Y G  +  LA  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRGAFWDEINISKAVWEIPASR------------MKMRRPHVVPLSRQALTLIGQI  288
            R++ELR A W EI+I +A+W IPA R             KMR PH+VPLS+Q +++++++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QELTGNYPLVFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQGYN  346
            Q  +G+  L+F G +DPRK +SE ++N+ ++ +GY+    V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMEA  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD+++A
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

368) PAU_01003 in NC_012962


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  278 bits (1040),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 164/407 (41%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MKLNARQVESAKAKATDYKLADGSGLYLLVKKNGARYWRLKYRIAGKEKLLALGIYPNLS  60
            M L   ++ +AK+    YKL+DG+G++LLV  NG+RYWRL+YRI GKEK LALG+YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LANARAKRDEAKQHLANGVDPAEVKKTKQKEIIRQATNTFEAIAKEWHSYKLPNWSVGYA  120
            L++AR+KRDEA++ +++GVDP E K++K+  ++ +   +FE IA+ WH+ +  +W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKK--VVPDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  DDLLESFNKDIFPYIGKRIITDIKPLDMLETLRKMEQRGVLDKLKKIRQACSQVFKYAIV  180
            D +L S++ ++FP+IG+R IT ++  D+L  +R  E + + +   +++Q  S V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRSEYNPAAELSGALASPKVKHFPHLLADELPLFLQTLSQYKGSIITQIATKLLLLTGV  240
            +G   YNPA +++GAL++ K +H P L    LP +L  ++ YKG  +TQ+A  L LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAKWDELDLDRKIWEIPLER------------MKMRRTHIVPLSEQVLSLFKTL  288
            R+ ELR A+W E+D+D  +W IP ER             KMR  H+VPLS QV++++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EVITGRFEFIFHGRNDPNKPMSEAAINQVIKRIGYGSR--ATGHGFRHTMSTILHEQGYN  346
            +  +G   +IF G +DP KP+SE ++N+ ++ +GY++     GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

369) ECSE_0264 in NC_011415


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  278 bits (1039),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 164/406 (41%), Positives = 271/406 (67%), Gaps = 25/406 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   ++ AAKP +KAYKL+DGAG++L V P+GSRYWR++YR+ GKEK +A+GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEGYA  120
            L++AR+ RDEA+K ++EG+DP   K+  K+V D+QL  +F+ +A  WH+++  +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDIIEAFNKDIFPYIGQLPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYAIV  180
              ++ +++ ++FP+IG+  +  ++   LL  +R  E++   E A +++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVVELPDFFKALSGYTGSPLVVLAARLLILTGV  240
            +G   YNPA D+++A++    +H P L +  LP+++  +++Y G P+  LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGACWSEFDFEKAVWEIPAER------------MKMKRPHLVPLSTQALEIAQQL  288
            R++ELR A WSE+D+++A+W IPAER             KM+ PHLVPLS Q + I  +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVMSGQYPLVFPGRNDPRKTMSEASINQVFKRIGY--TGKVTGHGFRHTMSTILHEEGFN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY  T  V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-AQYLDGRLEMMQWYADYID  387
              W    +E Q++H ++N++R++Y H A+ L+ R  M+QW AD++D
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

370) GBP346_A1152 in NC_012695


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  277 bits (1038),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 184/407 (46%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  21   MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  80
            M+LTD ++R AK++  +YKLTDG GMFLLV+PNG++YWRL YR+LGK+KTLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  81   LATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYA  140
            L+ AR KRDEAR  ++ G+DP E K+  +  +++    SFE +AR W  S++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  141  EKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIV  200
            +KVL+SLE +VFP IG R I+ +++P++L  VR  EA+ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  201  TGRCSRNPAADIDAQ-TALKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMA  259
            +G    NPA D+ +  T++K+    QH + +  + +P+L+  I++Y+G+ VT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  260  LTCVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDV  307
            L  +R++E+  A WSE+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  308  LAQLRALNGQHRFVFYSVQG-RSHISNNTMLYALYRIGYKSR--MTGHGFRGLAATALRE  364
            LA+L++  G++ ++F + ++ R  IS+NT+  AL  +GY +   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  365  LGF-GRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD  409
             G+ +RD VERQM+H ERN V AAY+H AE L ERR M+Q W+D LD
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

371) intB in NC_020409


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  277 bits (1036),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 167/405 (42%), Positives = 264/405 (66%), Gaps = 19/405 (4%)

Query  1    MPLTDAKIKAAKPKSKEFTLNDGEGLSLVVNPKGRKWWRFRYQINGKRTMLSLGPYPYIS  60
            M+LTDAKI+AAKP  K + L DG G+ L+V+P+G + WR+RY+I GK   L+LG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LQEARLKRGDLKTLIAQGHDPSRKRKEDKRKASASEAFEAIAREWFGKQVGSGWSERHAK  120
            L EAR KR++ + LI++G DP  +++  K  +    +FE IAR W +      W++ H+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHAS--NKQWAQSHSD  118

Query  121  TTMERMKKNIFPFIGDRPISELGVEDMLGVVQRCEKRGAVETARRIRQIMSQVFRYAVAA  180
              +  +  ++FPFIG+R I+ L   D+L  V+  E +   E A R++Q +S V RYAV +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GRAERDPAADIKGALPPARKVKHHPSITDPKEIGPLLRAVDGFSGTLVVHCALRFAPLVF  240
            G    +PA D+ GAL   ++ +H+P++  ++ +  LL  ++++ G  V + A+ +  LVF
Sbjct  179  GIIRYNPALDMAGALTTVKR-QHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRNAEWGEVDLEGSEWRIPAEK------------MKGGSPHIVPLSTQAVEVLTE  288
            +R++ELR A W+E+D++ + W IPAE+             K  +PH+VPLS Q V +L+E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  289  LHPLTGPSGYVFPSVRTSARPMSENTINVSLRRIGYDKT-EMTGHGFRSMASTLLNEHG-  346
            L+  +G +G +F + + + +P+SENT+N +LR +GYD T ++ GHGFR+MA + L E G 
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  WHKDAIERQLAHTPKDKVRASYNY-AEHLPERKLMMQAWADYLDS  390
            W +DA+ERQ++H  ++ VRA+Y   AEHL ER+LM+Q WAD+LD+
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

372) intB in NC_009348


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  276 bits (1033),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 193/421 (46%), Positives = 284/421 (68%), Gaps = 22/421 (5%)

Query  1    MPLTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRHGGKEKKLALGVYPE  59
            M+LTD   R AK     ++ KL+D  G+FLLV+ +G +YW+L+YR  GKEK LALGVYPE
Sbjct  1    MALTDAKIRAAK--PTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPE  58

Query  60   VSLrearakrdearrVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPG  119
            VSL EAR+KRDEAR++I+EG+DP   ++  KV + L  + S+E +AR WH S+   W+ +
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASN-KQWAQS  115

Query  120  HATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYA  179
            H+ +V+ SLE +VFP +G   IT L +P +L ++R  E +   E A+R+ QR+SA+MRYA
Sbjct  116  HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA  175

Query  180  IQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLT  239
            +Q+G   YNPA D+ GAL + K++HRPAL  S LPE++ R+ +   +P T+LA+ L +L 
Sbjct  176  VQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  240  MTRPGEVRFARWDEFDMERAEWRIPAAR------------MKMRTEHLVPLSRQALAVLD  287
              R++E+R+ARW E+D++ A W IPA R             KMRT HLVPLS+Q +A+L 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  288  ELHQLTGHCELLFPSERKLTNPMSENTLSYAMGRMGYKGI--ATPHGFRALASTTLNEEG  345
            EL+  +G+  L+F + +   +P+SENT++ A+  MGY        HGFRA+A ++L E G
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  346  F-DPDVIERQLAHAERNKVRAAY-HRAEYLDDRRKLLQWLADFYDSQRGSNVLPVNFNRV  403
            +   D +ERQ++H ERN VRAAY H+AE L++RR +LQW ADF D++R   + P ++ ++
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

Query  404  G  404
             
Sbjct  416  N  416

373) SSON53_21650 in NC_016822


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  276 bits (1031),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 149/354 (43%), Positives = 242/354 (69%), Gaps = 17/354 (4%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH S+ + W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKGR--LTGHGFRHTMSTIL  340
            +  + ++ L+F G +DPRKPIS +++N+ + ++GY     + GHGFR    + L
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

374) EC55989_0268 in NC_011748


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  276 bits (1034),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAGKEKLLALGVYPEVT  60
            M L   +I +AKP +KAYKL+DG+G++LLV P+G++YWR++YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            L++AR+KR+EA++ I+ G+DP E KR  K+  + QL  +F +IA  WH+S+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
              +L +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            +G   YNPA D+++A+     +H P L    LP+++  ++SY G ++  +A  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGALWDEIDLNKAIWEIPASR------------MKMRRPHVVPLSKQALSLIGQI  288
            R++ELR A W EID+++A+W IPA R             KMR PH+VPLSKQ +++++++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KELTGNYPLMFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQGYN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY+    V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

375) O3K_20180 in NC_018658


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  276 bits (1034),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAGKEKLLALGVYPEVT  60
            M L   +I +AKP +KAYKL+DG+G++LLV P+G++YWR++YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            L++AR+KR+EA++ I+ G+DP E KR  K+  + QL  +F +IA  WH+S+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
              +L +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            +G   YNPA D+++A+     +H P L    LP+++  ++SY G ++  +A  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGALWDEIDLNKAIWEIPASR------------MKMRRPHVVPLSKQALSLIGQI  288
            R++ELR A W EID+++A+W IPA R             KMR PH+VPLSKQ +++++++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KELTGNYPLMFPGRNDPRKTMSEASINQVFKRIGYNGK--VTGHGFRHTMSTILHEQGYN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY+    V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

376) ETAC_11945 in NC_020796


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  276 bits (1034),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 268/407 (66%), Gaps = 25/407 (6%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRYRYRFAGKPKMISFGVYGDVS  60
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARAKRDEARSMLAKGINPSEARKAEKIALQFAHENSFESVAREWHGSKKATWSEGYA  120
            L++AR+KRDEAR +++ G++P E ++A K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPAFISALENYKGSLVTKYATQLLMLTGV  240
            +G  +YN A D+A AL   K QH P L  S LP ++S + +YKG  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAEWVEFDLENAIWEIPKER------------MKKRRPHLVPLSTQALSILRQL  288
            R+ ELR A W E+D++NA+W IP ER             K R PHLVPLS Q ++IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QVITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHEHGFE  346
            Q  +G+ +L+F G +D RKP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  STW----IEMQLAHVDKNSIRGTYNH-AQYILSRKKMMQWYSEFISN  388
              W    +E Q++H ++N++R++Y H A+ +  R+ M+QW ++F+  
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

377) SEEB0189_04710 in NC_021844


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  275 bits (1028),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 162/404 (41%), Positives = 261/404 (65%), Gaps = 25/404 (6%)

Query  1    MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  ++ +AKP DK+YKL+DG+G++LLV+PNG RYWRL+YR LGKEK LA+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARNKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSYR  120
            L+EAR KR++A++ ++ G DP  +++  K+    D + SFE I+R W      +W+ S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            + +L+++E +VFP+IG+R I  ++  +LL  +   EA+   E   +++QR + V +YAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            +G   YNPA D+A+A+T   ++H + L    LPE+L  + +Y G  + ++A+ L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWQEFDFERKVWNVPAER------------MKMRRPHMVPLSSQAIDLLNQL  288
            R++ELR A W E+D++  +W +PAER             KMR PH+VPLS Q + +L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPMTGAGTLLFPGRNNPKKPMSDMALTVLVRRIGYAGR--VTGHGFRHTMSTILHEQGFN  346
            +  +G   L+F G ++P+KP+S+ ++   +R +GY     V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEGRKEMMQWYGDF  385
              W    +E Q++H ++N++R++Y H A+ LE R+ M+QW +DF
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADF  398

378) SEEH1578_21245 in NC_021810


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  275 bits (1027),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 169/405 (42%), Positives = 272/405 (68%), Gaps = 25/405 (6%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR+RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  120
            L++AR+KRDEAR +++ G++P E ++A+K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            +G  +YN A D+A AL   K QH P L  S LPE+++ +++Y+G  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAEWAEFDLDNALWEIPKER------------MKKRRPHLVPLSTQAISILKKL  288
            R+ ELR A W+E+D+DNA+W IP ER             K R PHLVPLS Q ++IL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHELGFE  346
            Q  +G+ +L+F G +D RKP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-AQYLENRRKMMQIYSDML  386
              W    +E Q++H ++N++R++Y H A+ LE+RR M+Q  +D L
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

379) EcSMS35_0299 in NC_010498


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  274 bits (1026),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 165/403 (41%), Positives = 269/403 (67%), Gaps = 25/403 (6%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   ++ AAKP +KAYKL+DGAG++L V P+GSRYWR++YR+ GKEK +A+GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYA  120
            L++AR+ RDEA+K ++EG+DP   K+  K+V D+QL  +F+ +A  WH+++  +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDIIEAFNKDIFPYIGQLPVNDIKPLVLLNVLRRMESRGATEKAKKVRQRCSEVFRYAIV  180
              ++ +++ ++FP+IG+  +  ++   LL  +R  E++   E A +++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV  240
            +G   YNPA D+++A++    +H P L +  LP+++  +++Y G P+  LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQQL  288
            R++ELR A WSE+D+++A+W IPAER             KM+ PHLVPLS Q + I+ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVISGQYPLVFPGRNDPRKTMSEASMNQVFKRIGY--TGKVTGHGFRHTMSTILHEEGFN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY  T  V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-ALYLEGRREMMQWYAD  384
              W    +E Q++H ++N++R++Y H A  LE RR M+QW AD
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWAD  397

380) CFSAN002069_19870 in NC_021812


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  274 bits (1026),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 169/405 (42%), Positives = 272/405 (68%), Gaps = 25/405 (6%)

Query  17   MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  76
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR+RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  77   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  136
            L++AR+KRDEAR +++ G++P E ++A+K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  137  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  196
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  197  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  256
            +G  +YN A D+A AL   K QH P L  S LPE+++ +++Y+G  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  257  RTIELRAAEWAEFDLDNALWEIPKER------------MKKRRPHLVPLSTQAISILKKL  304
            R+ ELR A W+E+D+DNA+W IP ER             K R PHLVPLS Q ++IL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  305  QEITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHELGFE  362
            Q  +G+ +L+F G +D RKP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  363  SAW----IEMQLAHVDKNSIRGTYNH-AQYLENRRKMMQIYSDML  402
              W    +E Q++H ++N++R++Y H A+ LE+RR M+Q  +D L
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

381) SeHA_C2638 in NC_011083


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  274 bits (1026),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 169/405 (42%), Positives = 272/405 (68%), Gaps = 25/405 (6%)

Query  17   MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  76
            M L+D +I+ AKP DK+Y L DG G+ LL++  GS+ WR+RYR+ GK K +++GVY +VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  77   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  136
            L++AR+KRDEAR +++ G++P E ++A+K+  ++  + SFE +AR WH+S+K  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHS  117

Query  137  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  196
              VL+ +E ++FPFIG+R I  ++  +LL  ++  E +   E +S++++R + V+RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  197  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  256
            +G  +YN A D+A AL   K QH P L  S LPE+++ +++Y+G  VT+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  257  RTIELRAAEWAEFDLDNALWEIPKER------------MKKRRPHLVPLSTQAISILKKL  304
            R+ ELR A W+E+D+DNA+W IP ER             K R PHLVPLS Q ++IL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  305  QEITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYHGR--LTGHGFRHTMSTILHELGFE  362
            Q  +G+ +L+F G +D RKP+SE ++NK ++++GY+    + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  363  SAW----IEMQLAHVDKNSIRGTYNH-AQYLENRRKMMQIYSDML  402
              W    +E Q++H ++N++R++Y H A+ LE+RR M+Q  +D L
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

382) int in NC_014228


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  274 bits (1024),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 170/406 (42%), Positives = 268/406 (67%), Gaps = 25/406 (6%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDIS  60
            M LT  ++ +AKP +K+YKL+DG+G++LLV+PNG+RYWRL+YRI GKEK LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKGYA  120
            L+EARTKR+EAR+ +S+G DP E+K+A K    + +S  FE IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLS--FEHIARRWHASNK-QWAQSHS  117

Query  121  EDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            + +L  L  ++FP+IG+R +T ++ +++L  +R  E + + +   + +Q    +  YAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEFNPVTDLASALKTPKQKHFPHLLADQMNEFLIALAGYSGSEVTQSATRLLMLTGV  240
            +G   +NP  D+A+AL T K++H P L   ++ E+L  +++Y G  VTQ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRESEWTEFDFDKDIWQIPAER------------MKMRRPHIVPLSNQVKAILIKL  288
            R+ ELR + W+E+D+D+ +W IPAER             KMR PH+VPLS+QV AIL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  HSITGRGKYVFPGRNDAGKPMSEAAINQVIKRIGYDGR--ATGHGFRHTMSTILHEQGYN  346
            ++ +G    +F G +D+ KP+SE ++N+ ++ +GYD      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLEGRREMLQWYADHME  387
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD ++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

383) SeSA_A0666 in NC_011094


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  274 bits (1024),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTARQISTAKPTEKPYKLSDGGGLYLLVNPNGSRYWRMKYRYAGKEKLLSIGVYPDVT  60
            M LT  +I +AKPT+K+YKL+DG+G++LLV+PNGSRYWR++YR  GKEK L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARDKRTQAKRILAAGDDPSEVKQAEREAKNLAVNNSFELLALEWHEHKKPNWSSGYA  120
            L+EAR KR +A+++++ G DP E K+A +   +L +  SFE +A  WH  +K +W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  DDILEYLRKDIFPYIGKKAITDIKPMTMLSVLKKMEDRGVLDKLKKTRQACRQIFTYAII  180
            D +L  L  ++FP+IG++ IT ++   +L  ++  E + + +   + +Q    +  YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEFNPVTDLAGALKTPKQQHFPHLMPTQIGPFIHAVNTYSGSKVTRIATLLLMYTSV  240
            +G   +NP  D+AGAL T K+QH P L  +++  ++  + +Y G  VT++A +L +   +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRASEWTEFDLDNDLWQIPKER------------MKMRRPHLVPLSRQVKSHLLEL  288
            R+ ELR + W+E+D+DN +W IP ER             KMR PHLVPLS+QV + L EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KKITGWGKYVFPGRNDAHKPMSEASINQVIKRIGFAGK--VTGHGFRHTMSTILHEKGFN  346
            +  +G    +F G +D++KP+SE ++N+ ++ +G+     V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEAQLAHADRNTIRGTYNH-AQYLDGRREMLQWYADYLDE  388
              W    +E Q++H +RN +R++Y H A+ L+ RR MLQW AD+LD 
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

384) A1122_00590 in NC_017168


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

385) YpAngola_A3853 in NC_010159


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

386) YPC_0922 in NC_017265


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

387) int4 in NC_005810


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

388) int in NC_003143


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

389) int in NC_017154


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

390) int in NC_017160


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

391) y3271 in NC_004088


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

392) YPN_3086 in NC_008149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

393) int in NC_014029


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

394) SMWW4_v1c08950 in NC_020211


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  273 bits (1022),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 163/405 (41%), Positives = 258/405 (64%), Gaps = 25/405 (6%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D +IR AKP  KAY L DG G+ LL++PNGS+ WR+RYR  GK K ++LGVYP ++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARSRRDEARKLVVEGKNPSEVRKEQKLALQTESENAFEKIAREWHQLKSAKWSAGYA  120
            L++AR++RDEARKL+ EG +P E ++ +K+    + + +FE IAR WH   + +W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHA-SNKQWAQSHS  117

Query  121  SDIMEAFKNDIFPYVGARPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
              ++ ++  ++FP++G R +  ++  +LL  +R  E +   E   +++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEFNPAADLSSALEVHQSNHFPFLKANEIPDFLRALESYTGSRVVQIATKLLMITGV  240
            +G   +NPA D+++AL   + +H P L  + +P++L  + SY G  V Q+A  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAASWSEFDLDNAIWEIPAER------------MKMRRPHLVPLSTQALHLLNEL  288
            R+ ELR A WSE+D+DNA+W IPAER             KMR PHLVPLS Q + +L EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  VVMTGNYRYVFPGRNDPNKPMSEASINQVIKRIGYGGR--VTGHGFRHSLSTILHEQGYE  346
               +G+   +F G +DP KP+SE ++N+ ++ +GY+    V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNSIRGAYNH-AQYISQRGLMLQWYSDFI  386
              W    +E Q++H ++N++R+AY H A+ + +R LMLQW +DF+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

395) Gbem_3253 in NC_011146


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 178/406 (44%), Positives = 270/406 (67%), Gaps = 21/406 (5%)

Query  1    MALTDVKVRNAKPGEKQAKLSDGDGMYLLVTPQGGKCWRLKYRIAGKEKVLALGTYPEIS  60
            MALTD K+R AKP +K  KL+DG GM+LLV P+G++ WRL+YRI GKEK LALG YPE+S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARERKDAARKLIANGHDPGevkkaqkaaktaeaeNTFQAVTQEWHGRFKSQWSEKHA  120
            LSEAR ++D ARKLI++G DP E K+A+K     +   +F+ +++ WH+  + QW++ H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHAS-NKQWAQSHS  117

Query  121  EQILRRLELDVFPWLGTRPVGEIKAPELLAVLRRIEMRTL-ETAHRVRIACSQVFRYAVA  179
            +++L+ LE +VFP +G R +  +++P+LL  +R  E + + E A R++   S V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  180  TGRAERDPVADLKGALPPVKNNHFAALTDPKAVAPLLRAIDGFEGSFVVKCALKLAALTF  239
            +G    +P  D+ GAL  VK +H +AL  ++ ++ LL  I+++ G  V + A+ L  L F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  240  VRPGELRHAEWSEIDLEAARWEIPAER------------MKMKVAHLVPLSTQAVDILKE  287
            +R++ELR A WSEID++ A W IPAER             KM+ +HLVPLS Q V IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  288  LHPLTGSGTYVFPCHRSPLRCMSENAVNAALRRMGFEKS-EITGHGFRAMA-RTILDEVL  345
            L+  +G    +F   + P + +SEN+VN ALR MG++ + ++ GHGFRAMA  ++++  L
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  346  HVRPDFIEHQLAHAVKDPLGRAY-NRTSHLAERQKMMQTWADFLDG  390
              R D +E+Q++H  ++ +  AY +++ HL ER+ M+Q WADFLD+
Sbjct  357  WSR-DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

396) YPDSF_0629 in NC_009381


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 265/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWVEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

397) YpsIP31758_0884 in NC_009708


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1016),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LA+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

398) int in NC_006155


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1016),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LA+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

399) YPTS_3293 in NC_010634


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1016),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LA+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

400) YPK_0925 in NC_010465


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  272 bits (1016),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 266/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   ++ +AKP DKAYKL+DG+G++LLV+ NGSRYWRL+YR+ GKEK LA+GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            L+ AR KRDEA+K+++ G DP ++K+  K+    +   +FE I+R W      +W++S  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIARRWHASN-KQWAQSHS  117

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
              ++ ++E++VFP+IG R I  ++  +L+  +   E +   E   +++QR + V +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            +G   YNPA D+A+A++  KR+H P L ++ +PE+LS ++SY G  + +LA+ L +L   
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI  288
            R++ELR A W+E+D+DNA+W IPA R             KMR PH+VPL+ Q ++IL ++
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQGFN  346
            Q  +G   ++F G  +  KPISE T+N  +R +GY+      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

401) ETEC_0316 in NC_017633


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  271 bits (1015),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   +I +AKP +KAYKL+DG+G++LLV PNG++YWRL+YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            L++AR+KR++A++ I+ G+DP E KR  K+  + QL  +F +IA  WH+S+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
              +L +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            +G   YNPA D+++A+     +H P L    LP+++  ++SY G ++  +A  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGALWDEIDFNKALWEIPASR------------MKMRRPHIVPLSEQALSLIGKI  288
            R++ELR A W EID+++A+W IPA R             KMR PH+VPLS Q +++++ +
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  REITGNYPLMFPGRNDPRKTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQGYN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY     V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

402) ECABU_c03450 in NC_017631


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  271 bits (1014),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   +I +AKP +KAYKL+DG+G++LLV PNG++YWRL+YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            L++AR+KR++A++ I+ G+DP E KR  K+  + QL  +F +IA  WH+S+ K+W+ + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
              +L +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTTKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            +G   YNPA D+++A+     +H P L    LP+++  ++SY G ++  +A  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGALWDEIDFNKAIWEIPASR------------MKMRRPHIVPLSEQALSLIGKI  288
            R++ELR A W EID+++A+W IPA R             KMR PH+VPLS Q +++++ +
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  REITGNYPLMFPGRNDPRKTMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEQGYN  346
            +  +G+  L+F G +DPRK +SE ++N+ ++ +GY     V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

403) NAL212_1009 in NC_015222


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  271 bits (1012),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 171/403 (43%), Positives = 270/403 (67%), Gaps = 20/403 (4%)

Query  2    LTDTAIRNAKPRDKFYKVSDSGGLYLLVKATG-KYWRMDYRFVGKRKTLAIGVYPTVSLV  60
            LTD+ IR AKP DK YK++D++G++LLV + G +YWR+ YR++GK KTLA+GVYP VSL 
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  61   AARKKRDEARELLGKHIDPSLAKAINKRIVLTAAENTFKAVALEWHTKTSKSWAESTANN  120
             AR KRDEAR L++  +DP   K  +K  V+   + +F  +A  WH+ ++K WA+S +++
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKK--VVPDLQLSFEHIARRWHA-SNKQWAQSHSDK  119

Query  121  IKRYLEKDIFPWLGNRAIKDIGAPDLLAVLRKIESRGAHEKAQRCREYAGRVFRYAIATG  180
            + + LE ++FP +GNR I  + +PDLL  +R  E++   E A R ++  + V RYA+ +G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  181  RAERDPSGDLRGALTPVKVKHHASITEPKAIGALLRSIWGFNGSYITKCALQLAPLVFVR  240
                +P+ D+ GALT VK +H++++  ++ +  LL  I +++G  +T+ A+ L  LVF+R
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  241  PGELRQAEWQEIDFDKQEWRIAGNK------------MKMGEAHIIPLSPQVIEILQSIH  288
            ++ELR A W EID+D+  W I++++             KM  +H++PLS QV+ IL  ++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  289  PLTGDGQYIFPSIRSSARPMSENTINAALRRMGYE-KDEMTGHGFRSMASTLLHEHG-WP  346
              +G+   IF + + + +P+SENT+N ALR MGY+  +++ GHGFR+MA + L E G W+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  347  HEAIERQLAHAERNKVVAAYNY-AEHLPKRKEMMRWWADYLDE  388
            ++A+ERQ++H ERN V AAY   AEHL  R+ M++WWAD+LD 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

404) PC1_2870 in NC_012917


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  270 bits (1008),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKTLALGVYPEIT  60
            M+LTD K+R+AKP DKAYKLTDG GM L+VHPNGS+YWRL+YR+ GK+KTLALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWHEYKRPNWSKGYA  120
            LSEAR +RDEA++ I+ G DP EQK+  K + +  ++ +F  IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPD--LQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDLMEAFENDIFPDIGKRPVAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R ++ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAENNpaselasalpppkaTHYPHLLPDELPTFLRALSTYSGSKVTQLATRILMLTGV  240
            +G    NPA ++A+AL   K  H P L    LP +L  +++Y G  VTQLA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRQAEWKEFDFEKGLWEVPKER------------MKMRRPHLVPLSAQVIDALQQL  288
            R+ ELR A W E+D+++++W +P ER             KMR PHLVPLS QV+  L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            Q+ +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLEQRRGMLQWYGDFIDG  388
              W    +E Q++H ++N +R++Y H A+ LE+RR MLQW +DF+D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

405) W5S_3565 in NC_017845


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  270 bits (1010),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MKLNARQVDTAKPKDKPYKLADGGGLYLLVKPNGARYWRLKYRVAGKEKLLALGVYPDVT  60
            M L   ++ +AKP DK+YKL+DG+G++LLV PNG+RYWRL+YR+ GKEK LALGVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LadarakrdeakrGIAGGIDPSEAKRKEKAILEAQVNNTFQDIATEWHSSKLKKWSEGYA  120
            L++AR+KRDEA++ I+ G+DP E KR  K + + Q+  +F++IA  WH+S+ K+W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  SDIMEAFNKDVFPYIGKKPIAEIKPLELLNVLRRMEGRGATEKAKKVRQRCGEVFRYAIV  180
              ++ +++ +VFP+IG++ I+ ++  +LL  +R  E++   E A +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLTSAMQGHESSHYPFLAAPDLPAFFEALSSYSGSMLVVLAARLLIITGL  240
            +G   YNPA D+++A+      H P L  + LP ++  ++SY G  +  LA  L ++  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTGELRGATWKEIDSDTAVWEIPAER------------MKMRRPHIVPLSSQAQAIIARI  288
            R++ELR A W EID D A+W IPAER             KMR PH+VPLS Q  AI+A +
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  REMTGRYPHIFPGRNDPRKTMSEASINQVFKRIGYSGK--VTGHGFRHTMSTILHEQGYN  346
            +  +G    IF G +DPRK +SE ++N+ ++ +GY     V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDA  388
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++DA
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

406) amb0488 in NC_007626


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  270 bits (1009),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 260/383 (68%), Gaps = 16/383 (4%)

Query  23   GGGMFLLVTPQDQRYWRLKYRFGGKEKLLALGVYPDVTIKTARQLRDDAKKQLANGIDPS  82
            G+GMFLLV P++ RYWRL+YR+ GKEK LALGVYP+V++  AR  RD+A+K +++G+DP 
Sbjct  23   GAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPC  82

Query  83   DARKAKKSSQLLDGPDSFENVAREWFAKNVATWAETHSSKVLQRLESDVFPLIGTKPIGS  142
            + ++AKK    L+   SFE++AR W A N   WA++HS KVL+ LE++VFP+IG + I +
Sbjct  83   EQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHSDKVLKSLETHVFPFIGNRDITT  139

Query  143  ITAPMILAVARKIEARGANDTAHRAVQNAGQIMRYAVATGRAERDPTGDLRGALPPVRHK  202
            + +P +L   R  EA+   + A R  Q  + +MRYAV +G    +P+ D+ GAL  V+++
Sbjct  140  LNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQ  199

Query  203  HFAALTDPKLVGELLRAFDAFEGTVVVKAALQLAPLVFVRPGELRKAKWADIDLDAGSWA  262
            H +AL  ++L  ELL  ++++ G  V + A+ L  LVF+R++ELR A+W++ID+D + W+
Sbjct  200  HRPALDLSRL-PELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWT  258

Query  263  FHASK--------ARKGETI--EHLVPLSTQAVEILRDLHQYTGNRECLFPG-RDPRKPM  311
            + A +        +++G  +   HLVPLS Q V IL +L+  +G+   +F G +DPRKP+
Sbjct  259  IPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPI  318

Query  312  SEAAVNAALRRLGYDTKTEITGHGFRAMARTILAEQLGEDPHVIEQQLAHRVPDALGRAY  371
            SE +VN ALR +GYDT  ++ GHGFRAMA + L E      + +E+Q++H+  +++  AY
Sbjct  319  SENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAY  378

Query  372  -NRTKYIEQRRAMMQRWSDYLDT  393
             +++  +E+RR M+Q+W+D+LD+
Sbjct  379  IHKAEHLEERRLMLQWWADFLDA  401

407) YE105_C3845 in NC_015224


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1007),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 166/403 (42%), Positives = 262/403 (66%), Gaps = 25/403 (6%)

Query  1    MPLSDIQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLIS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDMARKQVADGTDPAEVKKADKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLENGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++N++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGRNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRRDMLQWYAD  384
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWAD  397

408) Pecwa_1403 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1004),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKTLALGVYPEIT  60
            M+LTD K+R+AKP DKAYKLTDG GM L+VHPNGS+YWRL+YR+ GK+KTLALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWHEYKRPNWSKGYS  120
            LSEAR +RDEA++ I+ G DP EQK+  K + +  ++ +F  IA  WH  ++ +W+++ S
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPD--LQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDLMEAFENDIFPDIGKRPVAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R ++ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAENNpaselasalpppkaTHYPHLLPDELPDFLRALSTYSGSKITQLATRILMLTGV  240
            +G    NPA ++A+AL   K  H P L    LP++L  +++Y G  +TQLA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRQAEWKEFDFEKGLWEVPKER------------MKMRRPHLVPLSDQVIDALQQL  288
            R+ ELR A W E+D+++++W +P ER             KMR PHLVPLS QV+  L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  RAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            ++ +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLEQRRGMLQWYGDFTDG  388
              W    +E Q++H ++N +R++Y H A+ LE+RR MLQW +DF D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

409) Pcar_1823 in NC_007498


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1005),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 165/405 (41%), Positives = 265/405 (66%), Gaps = 10/405 (2%)

Query  6    KPLSATKVKKAKPAEKQYTLFDGQGLFLLVTPTGSKLWRFKYRLNGKPKLMSFGAYPEVS  65
             +L+ +K++ AKP++K Y L DG G+FLLV P GS+ WR++YR+ GK K +++G YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  66   LEQAREKRTAARKQVANGIDPCVVRRAVKESQAAGEGSFEVVAREWHQKFSSTWSESHAK  125
            L +AR KR  ARK +++G+DPC  +RA K   +  + SFE +AR WH   +  W++SH+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRA-KKVVPDLQLSFEHIARRWHAS-NKQWAQSHSD  118

Query  126  TQLGRMERDLFPWLGDRPIVEITSPELLAVLRRIESRGALETAHRVKTICGQIFRYAIAT  185
              L  +E ++FP +G+R I  + +P+LL  +R  E++   E A R++   + + RYA+ +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  186  GRAERDPAADLKGALPPVQATHHAAMTKPGDLADLLRTIDAYEGSHVVRCALRFAPLVFV  245
            G    +PA D+ GAL  V+  H++A+   + L++LL  I++Y G  V + A+ +  LVF+
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALD-LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  246  RPGELRQAEWSEFDLDAGEWNIPVERMKLPKKTKIRRAGE---AHLVPLSKQAVEILRDL  302
            R++ELR A WSE+D+D + W IP ER  LP     +R++    +HLVPLSKQ V IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  303  QPLTGDGLYVFPSVRSAGRPMSDNTINAALRRLGY-SKDEATGHGFRATA-RTILDEVLQ  360
            Q  +G+   +F + + + +P+S+NT+N ALR +GY + ++  GHGFRA A  ++++  L 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  361  VRPDLIEHQLAHSVRDPLGRAY-NRTSFLPERREMMQLWADYLDG  404
             R D +E+Q++H  R+ +  AY +++  L ERR M+Q WAD+LD+
Sbjct  358  SR-DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

410) A1122_05665 in NC_017168


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

411) YpAngola_A4153 in NC_010159


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSEKSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

412) YPA_4123 in NC_008150


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

413) YPC_4545 in NC_017265


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1004),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITQLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

414) xerC4 in NC_005810


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

415) YPO4033 in NC_003143


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

416) YPD4_3547 in NC_017154


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

417) YPD8_3553 in NC_017160


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

418) y4052 in NC_004088


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

419) YPN_3680 in NC_008149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

420) YPDSF_3775 in NC_009381


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 166/405 (41%), Positives = 263/405 (65%), Gaps = 25/405 (6%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +IR AKP +KAY L+DG G+ LL++PNGS+ WR+RYR+ GK + ++LG Y  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            L+EAR+KRD ARK +++G DP E K+A K+   L  + SFE I+R WH A   +W+ +  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            + ++ ++E+++FP+IG+R I+ +   +LL  ++  E +   E + +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            +G   YNPA D+A+AL+T K+QH P L    +P ++  + +Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL  288
            R+ E+R+A W EID++ ++W IPAER             KMR PH+VPLS QV+A++ +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGYKGR--ATGHGFRHTMSTILHEQGYD  346
               +G+   IF G +D +KPIS +TVN+ + ++GY       GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI  386
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

421) YE105_C2844 in NC_015224


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  267 bits (1000),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 165/403 (41%), Positives = 259/403 (65%), Gaps = 25/403 (6%)

Query  1    MLLNDFKIRSAKPTDKAYTLNDGKGLSLIISPNGVKGWRFRYQFGGKAHMISFGVYGPVS  60
            M L D KIR+AKPTDKAY L DG G+ L++ PNG + WR+RY++ GK   +++GVY  VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARRQREEAKSALANGTNPSDARKAEKIALKYPAKNTFEDIAREWHTSKLATWTPEYA  120
            L++AR +R+EA+  +++G +P + ++A K+        +FE+IAR WH+S+   W+   +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DTVIRGFDNNVFPYIGKRPIDQIAPLELLAVLQRIEKRGALELTGKIRRRCGEVFRYAVV  180
            D V+++++ +VFP+IG+R I  +   +LL  ++  E +   E+++++++R + V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRATYNPAPDLASALNRPKNGHYPFLTESELPEFIQALDNYKGSKQTKYATQLLMLTGV  240
            +G   YNPA D+A+AL   K  H P L  S LPE++  +++YKG   T+ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRAAEWSEFDLDNALWEVPKER------------MKKRRPHLVPLSKQALAILEKL  288
            R+ ELR A WSE+D+DNA+W +P ER             K R PHLVPLSKQ +AIL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVLTGNYKLVFPGRNDAGKPMSEASINKVIKMLGYHGR--ATGHGFRHTMSTILHEKGYN  346
            +  +G+  L+F G +D+ KP+SE ++NK ++++GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNSIRGTYNH-AQYLEGRREMLQWYGD  384
              W    +E Q++H ++N++R++Y H A+ LE RR MLQW +D
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWAD  397

422) Pecwa_1377 in NC_013421


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  267 bits (999),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFAGKQKTLALGVYPEIT  60
            M+LTD K+R+AKP DKAYKLTDG GM L+VHPNGS+YWRL+YR+ GK+KTLALGVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWREYKRPNWSKGYA  120
            LSEAR +RDEA++ I+ G DP EQK+  K + +  ++ +F  IA  W+  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPD--LQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  EDLMEAFENDIFPDIGKRPIAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            + ++ ++E ++FP IG+R I+ ++  ++L ++R  E + + +   +++Q  + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAENNpaselasalpppkaTHYPYLLPDELPDFLRALSTYSGSKVTQLATRILMLTGV  240
            +G    NPA ++A+AL   K  H P L    LP++L  +++Y G  VTQLA  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRQAEWKEFDFEKRLWEVPKER------------MKMRRPHLVPLSDQVIDALQQL  288
            R+ ELR A W E+D+++ +W +P ER             KMR PHLVPLS QV+  L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  RAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQGYN  346
            ++ +G   L+F G +D  KP+SE ++N+ L+ +GY+      GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IELQLAHVDKNTIRGTYNH-AQYLEQRRSMLQWYGDFVDG  388
              W    +E Q++H ++N +R++Y H A+ LE+RR MLQW +DF+D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

423) Bcen_1752 in NC_008060


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 185/407 (46%), Positives = 275/407 (68%), Gaps = 25/407 (6%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFRGKQKTLALGVYPAVT  60
            M+LTD ++R AK++  +YKLTDG GMFLLV+PNG++YWRL YR+ GK+KTLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdarraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            L+ AR KRDEAR  I+ G+DP E  +   +        SFE +AR W  S++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCE--QKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  EKVLNSLEVDVFPKIGARPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            +KVL+SLE +VFP IG R I+ +++P++L  VR  EA+ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCSRNPAADIDAQ-TVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMA  239
            +G    NPA D+ +  T +K+    QH + +  + +P+L+  I++Y+G+ VT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDV  287
            L F+R++E+  A WSE+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLRALNGQHRFVFYSVQG-RSHISNNTMLYALYRMGYKSR--MTGHGFRGLAATALRE  344
            LA+L++  G++ ++F + ++ R  IS+NT+  AL  MGY +   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LGF-GRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD  389
             G+ +RD VERQM+H ERN V AAY+H AE L ERR M+Q W+D LD
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

424) Bcen2424_2364 in NC_008542


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 185/407 (46%), Positives = 275/407 (68%), Gaps = 25/407 (6%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFRGKQKTLALGVYPAVT  60
            M+LTD ++R AK++  +YKLTDG GMFLLV+PNG++YWRL YR+ GK+KTLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdarraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            L+ AR KRDEAR  I+ G+DP E  +   +        SFE +AR W  S++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCE--QKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  EKVLNSLEVDVFPKIGARPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            +KVL+SLE +VFP IG R I+ +++P++L  VR  EA+ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCSRNPAADIDAQ-TVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMA  239
            +G    NPA D+ +  T +K+    QH + +  + +P+L+  I++Y+G+ VT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDV  287
            L F+R++E+  A WSE+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLRALNGQHRFVFYSVQG-RSHISNNTMLYALYRMGYKSR--MTGHGFRGLAATALRE  344
            LA+L++  G++ ++F + ++ R  IS+NT+  AL  MGY +   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LGF-GRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD  389
             G+ +RD VERQM+H ERN V AAY+H AE L ERR M+Q W+D LD
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

425) Bamb_2421 in NC_008390


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  266 bits (995),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 183/407 (45%), Positives = 275/407 (68%), Gaps = 25/407 (6%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  60
            M+LTD ++R AK++  +YKLTDG GMFLLV+PNG++YWRL YR+LGK+KTLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdakraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            L+ AR KRDEAR  I+ G+DP E  +   +        SFE +AR W  S++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCE--QKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  EKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            +KVL+SLE +VFP IG R ++ +++P++L  VR  EA+ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCSRNPAADIDAQ-TVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMA  239
            +G    NPA D+ +  T +K+    QH + +  + +P+L+  I++Y+G+ VT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDV  287
            L F+R++E+  A WSE+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLRALNGQHRFVFYSVQG-RSHISNNTMLYTLYHMGYKSR--MTGHGFRGPTATALRE  344
            LA+L++  G++ ++F + ++ R  IS+NT+  +L  MGY +   + GHGFR+ + +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LGF-GRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQVWGDHLD  389
             G+ +RD VERQM+H ERN V AAY+H AE L ERR M+Q W+D LD
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

426) YPTB3886 in NC_006155


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 267/407 (66%), Gaps = 25/407 (6%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVGKEKMLSIGVYPDVS  60
            M+LTD K+++AKP DKAYKLTDG+GM+LLV PNGS+YWRL+YR++GKEK L++GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLRYR  120
            L++AR KRDEARK+++ G DP E K+A K+   L  + +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP++G R I+ ++  +LL  +R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP ++  +++Y G  +T+ A  + +   +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFEKRLWEIPSE------------VIKMKRPHIVPLSEQVVELFQSL  288
            R+ ELR+ARW +ID+++ +W IP+E              KM+ PH+VPLS QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGMYPLVFIGRNDRAKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AHYLEGRREMMQWYGDNLES  388
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW +D L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

427) YPTS_4103 in NC_010634


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 267/407 (66%), Gaps = 25/407 (6%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVGKEKMLSIGVYPDVS  60
            M+LTD K+++AKP DKAYKLTDG+GM+LLV PNGS+YWRL+YR++GKEK L++GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLRYR  120
            L++AR KRDEARK+++ G DP E K+A K+   L  + +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWH-ASNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYAIV  180
            D ++ ++E ++FP++G R I+ ++  +LL  +R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP ++  +++Y G  +T+ A  + +   +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDIDFEKRLWEIPSE------------VIKMKRPHIVPLSEQVVELFQSL  288
            R+ ELR+ARW +ID+++ +W IP+E              KM+ PH+VPLS QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGMYPLVFIGRNDRAKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AHYLEGRREMMQWYGDNLES  388
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW +D L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

428) Gbem_2993 in NC_011146


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  264 bits (987),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 164/409 (41%), Positives = 273/409 (67%), Gaps = 23/409 (5%)

Query  1    MPLTDIAVKSAKPKEKDYKLSDGDGMYLLVTAGGGKRWRLKYRFLGKEKLLALGTYPDIS  60
            M+LTD  +++AKP +K YKL+DG GM+LLV + G++ WRL+YR+LGKEK LALG YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSEARNKRHEARKQLGHGIDPGAERKALKEVQAQEAAEIKNSFKLVACEWHSKFSGTWSN  120
            LSEAR KR+EARK +++G+DP  +++A K V     ++++ SF  +A  WH+  +  W++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV-----PDLQLSFEHIARRWHAS-NKQWAQ  114

Query  121  GHAGTIMDRLTRDVFPWLGDKPICEVEPVDILGVLRRVESRGALETAHRIRTICGQVMRY  180
            +H++ ++  L  +VFP +G++ I  ++  D+L  +R  E++   E A R++   + VMRY
Sbjct  115  SHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRY  174

Query  181  AVATGRAKRDSAADLRGALPPANAKHHASMTDPKEVAELLRAIDGFKGTFHVKCALQLAP  240
            AV +G  + ++A D+ GAL   + +H++++  ++ ++ELL  I+++KG    + A+ L  
Sbjct  175  AVQSGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNL  233

Query  241  LLFVRPGELRQMEWAELDLDGRMWNI-------PGVKM-----KMGQPHIVPLAHQAAEI  288
            L+F+R++ELR   W+E+D+D  MW I       PGVK      KM  PH+VPL+ Q   I
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  289  LGQLKPLTGAGRYVFPCHRSPLRPMTNNAVNAALRRMGY-TSDEMTGHGFRAMA-RTILD  346
            L++L+  +G    +F   + P +P+++N+VN ALR MGY T++++ GHGFRAMA  ++++
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  347  EVLQVRPDFIEHQLAHAVKDPNGRAY-NRTAHLAERRKMMQTWADYLDG  394
              L  R D +E+Q++H  ++    AY +++ HL ERR M+Q WAD+LD+
Sbjct  354  SGLWSR-DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

429) int in NC_011745


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  264 bits (986),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 260/407 (64%), Gaps = 25/407 (6%)

Query  14   MLLSDLAIRRAKPKEKAYTLNDGNGLSLLIEPNGSKGWRLRYRFAGKPKMLSLGVYPEVS  73
            M L+D  IR AKP +KAY L DG G+ LL++PNGS+ WRLRYR+ GK K L+LGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  74   LSDARTARDEAKRLIAGGVNPSEVRKAQKREQANKCGNTFEVIAREWYEKRLDRWSPSYA  133
            LS+ART RDEA++LI+ GV+P E ++A+K     +   +FE IAR W      +W+ S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ--LSFEHIARRWHASN-KQWAQSHS  117

Query  134  EEMIETFEKDVFPYIGGRPIAEIKPMELLAVLSRLNDRGATEKLRKVRQRCGEVFRYAII  193
            + ++ ++E +VFP+IG R I+ ++  +LL  +   + +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  194  TGRAEYNPAPDLASAFAPHKKEHYAYLKVDELPEFFRVFNTYTGSQIVKLGMRLLILTGL  253
            +G   YNPA D+A+A++  K++H + L +  LPE++  + +Y G  + +L++ L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  254  RPGELRQAEWQEIDFDNRLWEVPKER------------MKMRRPHCVPLSEQAIAILEQL  301
            R++ELR A W EID+DN +W +P ER             KMR PH VPLS Q +AIL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  302  KHMTGQYPFIFPGRIQHSKPMSEMAMNVLIRRIGYAGR--VTGHGFRHTMSTILHEQGYN  359
            +  +G+  +IF G  +  KP+SE ++N  +R +GY     V GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  360  SAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMDS  401
              W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

430) SN31241_7100 in NC_021902


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 261/407 (65%), Gaps = 25/407 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  ++ +A+P +K YKL+D  G++LLV   G+RYWRL+YRI GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            L+EAR KRD+ARK+ISEG DP E+KR  K+   +    +F+ +A  WH  +   W++S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              VL +L+ ++FP++G+R +T +   ++L  +R  E +   E   +++Q  + + RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            +G    NPA +++++L++ K  H P L    LP +L +++ Y G PVT++A  L LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQTTDILLQL  288
            R+ ELR A WSEID+DNA+WTIP  R             KMR  H+VPLS+Q   IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KTFSGQYQLVFPGRCDINKPMSEASINMVLKRIGYDGR--ATGHGFRHTMSTILHEQGFN  346
            +T +G+  L+F G  D  KP+SE ++N  L+ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

431) SeHA_C4738 in NC_011083


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  262 bits (980),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 261/407 (65%), Gaps = 25/407 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  ++ +A+P +K YKL+D  G++LLV   G+RYWRL+YRI GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            L+EAR KRD+ARK+ISEG DP E+KR  K+   +    +F+ +A  WH  +   W++S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              VL +L+ ++FP++G+R +T +   ++L  +R  E +   E   +++Q  + + RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            +G    NPA +++++L++ K  H P L    LP +L +++ Y G PVT++A  L LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILLQL  288
            R+ ELR A WSEID+DNA+WTIP  R             KMR  H+VPLS+Q   IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQGFN  346
            +T +G+  L+F G  D  KP+SE ++N  L+ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A+ L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

432) SMD_1781 in NC_017671


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 179/417 (43%), Positives = 268/417 (65%), Gaps = 23/417 (5%)

Query  7    PLTDTAIRKAKPGPKPTKLRDGGGLYVQLNPDGSRWWRWDYRRPVTGKRNTLSLGTYPEV  66
            +LTD+ IR AKP  K+ KL DG+G+++ ++P+GSR WR  YR  + GK +TL+LG YPEV
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPEV  59

Query  67   SLADARGRQAEARRLLASGIDPGEHRkaakvagvekaaNSFEVVTREWLGKQK-WVESYR  125
            SL++AR ++ EAR+L++ G+DP E+++A KV    +   SFE ++R W + +K W +S  
Sbjct  60   SLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQWAQSHS  117

Query  126  CKVVAWMDNDVFPWIGGRPVAELAAPDFLRVARRIEERGAIESAHRIMQNCGQVMRYAVA  185
             KV+  ++ +VFP IG R ++ L +PD+L   R  E +   E A R+ Q  + VMRYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  186  TGRADRNPVADLRGALAPPMERHHAAITDPRELGGLLRAIDGYAGDASTRAALRLAPLVF  245
            +G    NP  D+ GAL+    +H++A+  +R L  LL  I++Y G++ T+ A+ L  LVF
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  246  VRPGELRHAEWSEIDFDAGEWNIPAHK------------MKMREPHLVPLSSQAVAILRD  293
            +R++ELR A WSEID+D + W IPA++             KMR PHLVPLS Q VAIL +
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  294  LQPLTGHRQYVFPGGRSPKRPLSDNALTAALRRMGFD-KETMTAHGFRATARTLLDEVLG  352
            LQ  +G+   +F G++ P++P+S+N++  ALR MG+D  + + +HGFRA A + L E   
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  353  WRPDLIEHQLAHAVRDPNGRAY-NRTSHLPERRKMMQAWADYLDALRADTGNVIVPF  408
            W  D +E+Q++H  R+    AY +++ HL ERR M+Q WAD+LDA R      I PF
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR---ERFISPF  410

433) Tbd_0943 in NC_007404


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 164/403 (41%), Positives = 260/403 (65%), Gaps = 20/403 (4%)

Query  2    LTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLA  61
            LTD K+R AKP  +  KL+D+ G+FL + P+G++ WRL YR  GK+K L+LG YP VSL+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   DARQRRDEAKKLLAHGVDPAENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDR  121
            +AR +RDEA+KL+++GVDP E+++A K   +     SFE +AR WHA  +  W+ +HSD+
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPD--LQLSFEHIARRWHAS-NKQWAQSHSDK  119

Query  122  IIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAVETAHRAMQNCGQVFRYSVATG  181
            +++ LE ++FP +G++ I+ +  P LL ++R  E +   E A R  Q  + V RY+V +G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  182  RAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFVR  241
                +P+ D+ GAL  V + H ++  D  ++  LL  I++Y G PV + A+ L  L+F+R
Sbjct  180  IIRYNPALDMAGALTTVKRQH-RPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  242  PGELRHAEWAHFDLGAAEW------------RYT--VSKTNTEHIVPLSRQAISVLEELQ  287
            ++ELR A W+++D++ A W            +++   SK  T H+VPLS+Q +++L ELQ
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  288  PLTGHKRYVFPANRGEGRPMSENTVNAALRSLGYD-KETLTGHGFRAMARTLLDEVLGFR  346
              +G++  +F + ++  +P+SENTVN ALR +GYD  + + GHGFRAMA + L E     
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  347  PDIIEHQLAHAVRDPLGRAY-NRTTHLPERRKMMQGWADYLDE  388
             D +E+Q++H  R+ +  AY +++ HL ERR M+Q WAD+LD 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

434) Selin_1494 in NC_014836


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  262 bits (978),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 171/406 (43%), Positives = 264/406 (66%), Gaps = 18/406 (4%)

Query  7    PLTVKQIDSAKPKDKQYRLYDGGGLVFTIKPNGGKYWIMRYRYEKKSHELHLGTYPEVPL  66
            +LT  +I +AKP DK Y+L DG+G+ + + PNG++YW +RYR   K   L LG YPEV+L
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  67   SKAREFREEVRVQVAAGIDPKRYREEAENQLLRQKEGSFESVARSWCEIQKPRWTERHGS  126
            S AR  R+E R  ++ G+DP    +   ++++ + + SFE +AR W   +K +W++ H+ 
Sbjct  62   SEARTKRDEARKLISEGVDP--CEQKRAKKVVPDLQLSFEHIARRWHASNK-QWAQSHSD  118

Query  127  DVINSLETNVFPYIGSRPIYELKPRELLDVVKVIDDRGASEIARRVLQRISAIYDYAFAH  186
             V++SLET+VFP+IG+R I  L+  +LL  V+  + +   EIA R+ QRISA+  YA   
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  187  GLVELNPTAGLVKGLKPQKKQNFAALSAEEVPELVRAIEGYHGHPItklalklclltaSR  246
            G++  NP+ ++  +L   K+Q+ +AL    +PEL+  I +Y G+P+T+LA+ L LL   R
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  247  TNEIRFASWQEFDLDNTLWCIPAER------------MKMRRDHRVPLSRQAVAVVEELI  294
            ++E+R+A W E+D+DN++W IPAER             KMR  H VPLS+Q VA++ EL 
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  295  QYSGKNKYLFPNQNKPHTPITENTMLYALYRMGFHKRSTV--HGFRTLFSTIANEKSDFS  352
              +G N  +F   + P+ PI+ENT+  AL  MG++    V  HGFR++  +   E +  S
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  353  ADAVERQLAHQEQNRIRAAY-HRADYLDERRELMQWWADYLDGQNN  397
             DAVERQ++HQE+N +RAAY H+A+ L+ERR ++QWWAD+LD++ +
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

435) EcE24377A_3377 in NC_009801


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  260 bits (970),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 260/407 (64%), Gaps = 25/407 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDIS  60
            MALT  ++ +A+P +K YKL+D  G++LLV   G+RYWRL+YRI GKEK LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYT  120
            L+EAR KRD+ARK+ISEG DP E+KR  K+   +    +F+ +A  WH  +   W++S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              VL +L+ ++FP++G+R +T +   ++L  +R  E +   E   +++Q  + + RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            +G    NPA +++++L++ K  H P L    LP +L +++ Y G PVT++A  L LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILLQL  288
            R+ ELR A WSEID+DNA+WTIP  R             KMR  H+VPLS+Q   IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQGFN  346
            +T +G+  L+F G  D  KP+SE ++N  L+ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

436) MADE_1010570 in NC_011138


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  260 bits (970),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 269/411 (66%), Gaps = 24/411 (5%)

Query  1    MPLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVS  60
            M+LTD +I+ A+++ K   LTD  G+ LLV  NGS+YWRL+YR+ GK+KTLA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIEL-FNTQARLWWNKQKGQWSEGH  119
            L +AR    EAR+ + +++DP   K+ KK    V++++L F+  AR +W+  + QW+++H
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKK---VVPDLQLSFEHIAR-RWHASNKQWAQSH  116

Query  120  AARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAV  179
            + ++   L+ + +  +G+R I  +   D++  V+  E++   ++A R+ Q I  V R+AV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  180  QTGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVH  239
            Q+G++  NPA +++G L   K  HR++L    LP++L  +++Y  +G+ +T+LA+ L + 
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY--KGQPVTQLAVMLNLL  234

Query  240  TFVRPGELAGARWDEFDLEEKLWRIPAHR------------MKMKSDHIVPLSRQALAVL  287
             F+R++EL  ARW E+D+++ +W IPA+R             KM++ H+VPLS+Q +A+L
Sbjct  235  VFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAIL  294

Query  288  ENTKPFSARFEFVFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSI  347
             + +  ++   ++F + +D  K +S+NT+  A+  MGYD           HGFRA A S 
Sbjct  295  AELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYD----TTQDVCGHGFRAMACSA  350

Query  348  LNETGF-NPDAIERQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDS  397
            L E+G+ + DA+ERQ+SH ERNGVRAAY H A  LEER+ M+QWW+D+LD+
Sbjct  351  LIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

437) EcSMS35_3112 in NC_010498


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  260 bits (971),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 260/407 (64%), Gaps = 25/407 (6%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  ++ +A+P +K YKL+D  G++LLV   G+RYWRL+YRI GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            L+EAR KRD+ARK+ISEG DP E+KR  K+   +    +F+ +A  WH  +   W++S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              VL +L+ ++FP++G+R +T +   ++L  +R  E +   E   +++Q  + + RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            +G    NPA +++++L++ K  H P L    LP +L +++ Y G PVT++A  L LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtielrSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILLQL  288
            R+ ELR A WSEID+DNA+WTIP  R             KMR  H+VPLS+Q   IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGRAT--GHGFRHTMSTILHEQGFN  346
            +T +G+  L+F G  D  KP+SE ++N  L+ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYIDS  388
              W    +E Q++H ++N++R++Y H A  L+ RR M+QW AD++D+
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

438) BCAL2961 in NC_011000


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  259 bits (969),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 178/405 (44%), Positives = 273/405 (68%), Gaps = 13/405 (3%)

Query  1    MPLTDTTIRNTKPAEKPVKLFDGGGLFLLVTPAGQRYWRLKYRAAGKEKLLALGVYPDVT  60
            M+LTD+ IR +KP++K+ KL DG+G+FLLV P G RYWRL+YR  GKEK LALGVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laaarrkrdeareklaaGIDPGEAKKAEKRTARLSAENSFEAVAREWHIKYAPTWSESHG  120
            L+ AR KRDEAR  ++ G+DP E K+A K  + L  + SFE +AR WH      W++SH+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  SRILRRLEVDAFPWIGSKPIAELAPPDVLEVLRRVEKRGALETAHRLHANVSQVCRYAVA  180
             ++L+ LE + FP IG++ I+ L  PD+L  +R  E +   E A RL+  +S V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAQRDVTADLRGALPPVQQEHMAAVTDPKQVAELLRSIDGYQGTFPVLCALRLFPLLF  240
            +G  + + + D+ GAL  V+++H +A+ D  +++ELL  I++Y+G      A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  QRPGELRAAEWSEFDLDASTWEIPSER-----MKRTKQGKASGGAHIVPLSAQAVAILRD  295
             R++ELR A WSE+D+D + W IP+ER     +K + +G     +H+VPLS Q VAIL +
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  296  LHALTGNSRFLFPSVRTKDRPMSDNTINGALRRLGYD-GDTMTGHGFRAMARTILDEVLG  354
            L++ +G++ ++F + +   +P+S+NT+N ALR +GYD  + + GHGFRAMA + L E  G
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-G  355

Query  355  V-PVAIVEAQLAHAVKDPLGRAY-NRTAHLPQRREMMQRWADYLD  397
            + +   VE Q++H  ++ +  AY +++ HL +RR M+Q+WAD+LD
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

439) SeSA_A0374 in NC_011094


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  259 bits (969),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 165/409 (41%), Positives = 263/409 (65%), Gaps = 27/409 (6%)

Query  1    MMLNARKVEAAKGKEKSYKLADGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPAVS  60
            M L   K+ AAK  +K+YKL+DG+G++L V+PNGSRYWR++YR+ GKEK L++GVYP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARQKREDAKKLLAAGNDPGEVkkakklalTSATEIVNPFKEVALEWHKMKSPKWSKG  120
            L++AR KR++A+KL++ G DP E    +K A     ++  +F ++A  WH   + +W+++
Sbjct  61   LSEARTKRDEARKLISEGVDPCE----QKRAKKVVPDLQLSFEHIARRWHA-SNKQWAQS  115

Query  121  YASDILEAFEKDIFPHIGQRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVFRYA  180
             +  +L ++E ++FP IG+R I+ ++  +LL  +R  EA+   E A +++QR + V RYA
Sbjct  116  HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA  175

Query  181  IVTGRAIYNPAPDLASAMQGHEAVHYPFLKATELPEFFTALNAYTGSPIVVLGAHLLILT  240
            + +G   YNPA D+A+A+      H P L  + LPE+++ + +Y G P+  L+  L +L 
Sbjct  176  VQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  241  GLRTGELRAAEWCEIDFDNALWEIPKER------------MKMRRAHLVPLSNQalalle  288
             +R++ELR A W EID+DNA+W IP ER             KMR +HLVPLS+Q +A+L 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  289  tlkeltGNYPLMFPGRNDPSKSMSEASINQVFKRIGYAGR--VTGHGFRHTMSTILHEKG  346
             L+  +G+  L+F G +DP K++SE ++N+ ++ +GY     V GHGFR    + L E G
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  347  FNSAW----IETQLAHLDKNSIRGIYNH-AQYLEGRREMMQWYANYLSE  390
            +   W    +E Q++H ++N++R+ Y H A+ LE RR M+QW A++L  
Sbjct  356  L---WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

440) intB in NC_009485


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  258 bits (965),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 269/411 (66%), Gaps = 29/411 (7%)

Query  1    MPLTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAVG  60
            M+LTD+K R AK   K+ KL+DG+G+ LL+ P+G++YWRL YR  GK++TLALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHEN---WKDARSP  117
            L EAR+ RD+A++ I+ ++DP   KR +K  + +    +FE +AR WH +   W +++S 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQWAQSHS-  117

Query  118  YYAAQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRF  177
                ++L+ LE++ FP IG R I++L+ P+LL  +R  E + + E A RL+Q ++ + R+
Sbjct  118  ---DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRY  174

Query  178  AIVTGRAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVT  237
            A+ +G  + +P++D+ +AL +T   Q++ A+ LS LP +L ++ SY G+  T+LA+ L  
Sbjct  175  AVQSGIIRYNPALDMAGAL-TTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  238  LTFLRTTELRAGKWNELENLDENSALWRIPAER------------MKMRLEHLVPLSRQA  285
            L F+R++ELR ++W+E   +D ++A+W IPAER             KMR  HLVPLS+Q 
Sbjct  234  LVFIRSSELRYARWSE---IDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQV  290

Query  286  VAALRELRTLSGGSPNIFPSPGKG-DCMSSNTMLYALYRMGYHGRATT--HGFRAVASTI  342
            VA L EL+T +G +  IF ++      +S NT+  AL  MGY+       HGFRA+A + 
Sbjct  291  VAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSA  350

Query  343  LNETNLFNRDWIERQLSHVERNEVRRAY-NAAEWMPDRRRMMQWWADHITA  392
            L E+ L +RD +ERQ+SH ERN VR AY + AE + +RR M+QWWAD + A
Sbjct  351  LIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

441) Dret_1610 in NC_013223


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  258 bits (965),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 169/402 (43%), Positives = 263/402 (66%), Gaps = 18/402 (4%)

Query  1    MALTVKAIQAAKPREKLYRLNDERGLYLEIPPKGAYRWRFRYRFHGKPKMVSLGRYPDIS  60
            MALT   I+AAKP +K Y+L D  G++L + P+G+  WR+RYR+ GK K ++LG YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKQAREKRDEMRALVASSIDPSNYLRQARHAAK-DDSFEAVAREWHKKFKSRWTEGHAAT  119
            L +AR KRDE R L++ ++DP +  R  +  +  + SFE +AR WH   + +W+++H+  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHAS-NKQWAQSHSDK  119

Query  120  VLTRLEQNAFPWIGSQPIDSVTPLDILPLLRRIEDRGAIELAHRVRGIISQVFRFAVANE  179
            VL  LE + FP IG++ I ++   D+L  +R  E +   E+A R++  IS V R+AV + 
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  180  RASRDPASDLRDALTPRQENHFAAITNPSEIPALLGAISEYQGHFVTRCALRLASLVFVR  239
                +PA D+ +ALT  + +H +A+ + S +P LL+ I+ Y+G+ VT+ A+ L  LVF+R
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  240  PGELRKAEWDEIDLAHQEWRLPPAK------------TKLRKTHIIPLAHQACAIFNEIH  287
            ++ELR A W EID+ +  W +P+ +            +K+R  H++PL+ Q  AI+ E++
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  288  PLTGTGRYVFPSARDKNKPMSENTINAALRQLGF-SKEKMTAHGFRSMASTRLNELG-WH  345
              +G    +F +A+D  KP+SENT+N ALR +G+ + + + +HGFR+MA + L E G W 
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  346  PDAIERQLGHTEKNGVRAAYNH-AEYLEERRKMMQAWADYLD  386
             DA+ERQ++H E+NGVRAAY H AE LEERR M+Q WAD+LD
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

442) Reut_A2365 in NC_007347


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  257 bits (962),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 175/410 (43%), Positives = 278/410 (68%), Gaps = 26/410 (6%)

Query  7    PLTDTKIRNAKPRERSYKLFDGGGLYLEVMTDGRKLWRFKYVRPSGSESRLGFGVYPAVS  66
            +LTD+KIR AKP +++YKL DG+G++L V  +G + WR++Y R  G E  L++GVYP VS
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRY-RILGKEKTLALGVYPEVS  60

Query  67   LAQARTQRETARGIVADGRDPGAVKQEERRAARIAAGN--SFEAVARDWHNTQKSSWNDV  124
            L++ART+R+ AR ++++G DP     E++RA ++ ++   SFE +AR WH ++K  W + 
Sbjct  61   LSEARTKRDEARKLISEGVDPC----EQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQS  115

Query  125  YAGKVLASLENDVFPVLGSTPIADIKAPAILDLLRKVEARGVRDTTKRILQRMRAVFQYG  184
             ++KVL SLE +VFP +G+  I+ +++P +L  +R  EA+ + + + R+ QR+ AV +Y+
Sbjct  116  HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA  175

Query  185  IIYGLCDRNPAADIDSAAALKSESVQHQARVSPLELPQLLRDIDAYEGDAVTRLALQFMT  244
            +  G+   NPA  +D A+AL +   QH++ +    LP+LL  I++Y G++VT+LA+ +  
Sbjct  176  VQSGIIRYNPA--LDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  245  LTFVRTTEMIQARWVEIDEAKAEWRIPADR------------MKMRDPHVVPLSTQALAV  292
            L F+R++E+  ARW EID  +A W IPA+R             KMR PH+VPLS Q +A+
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  293  LAELRAINGHRDLVFYSPRGKSGHISNNTMLYALYRMGYHSR--MTGHGFRGLASTALNE  350
            LAEL++  G+ +L+F ++++    IS+NT+  AL  MGY++   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  351  LGFRP-DVIERQLAHVERNKVRAAYNH-AQYLPERRQMMQSWADHVHALR  398
             G+++ D +ERQ++H ERN VRAAY H A+ L ERR M+Q WAD ++A R
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

443) RSc0968 in NC_003295


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  257 bits (961),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 184/403 (46%), Positives = 265/403 (66%), Gaps = 20/403 (4%)

Query  1    MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG  60
            M+LTD   R AKP DK+Y+L+DG GM+L V PNGS+YWRL+YRI GKEK LALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laqartarddarrliaaGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYA  120
            L++ART RD+AR+LI+ G DP + ++  K+        +FE +AR WH  +   W  + +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ--LSFEHIARRWHASNKQ-WAQSHS  117

Query  121  TKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVV  180
             KVL SLET++FP +G R IT + +P++L  +R  E+++  E  +RLQQR SAV RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV  240
            +G    NP  D+ GA+ T K QH + ++ + +P L+  I +Y G+ +T++A+ +  L F+
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTKELIGAQWSEIDFETEEWRIPAER------------MKMREPHFVPLSWQAIALLRAA  288
            R+ EL  A+WSEID++   W IPAER             KMR PH+VPLS Q +A+L   
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  EKMTGNRQYVFQSPKG-RTHISNNTILYALYRLGYHSR--MTGHGFRGLASTMLHEQGF-  344
            +  +G+   +F ++ + R  IS+NT+  AL  +GY++   + GHGFR++A + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  345  NPDVIERQLAHAERNKVRAAYNH-AQYLPERRRMMQHWADHLD  386
            + D +ERQ++H ERN VRAAY H A+ L ERR M+Q WAD LD
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

444) Bcep1808_0425 in NC_009256


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  257 bits (960),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 271/404 (68%), Gaps = 20/404 (4%)

Query  4    KPLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPAT  63
             +LTDAK R A+     + KL DG+G++L ++++GS+ WRL+YR+ GKE+ L++G YP  
Sbjct  1    MALTDAKIRAAK-PTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEV  59

Query  64   SLADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSASH  123
            SL++AR++RDEA++L++EG +P  ++   K    +  Q +FE +A  W  +++  W+ SH
Sbjct  60   SLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSH  116

Query  124  ANRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFRYAV  183
            +++V K L+ +VFP+IG+R I+++ +PDLL  VR  E+++ +E A +  Q  + V RYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  184  ATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFLALTF  243
             ++    +P+ D+ GAL +V  +H + ++ S LPELL  I+SY G+P T+LA+ +  L F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  244  VRTIELRQAEWTEIDLERREWRIPAEK------------MKMRRVHIVPLAEQAIALLSE  291
            +R+ ELR A W+EID++   W IPAE+             KMR  H+VPL+ Q +A+L+E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  292  LRALTGHRRWLFPNSRRPLQQMSENTILYALYRMGYRSR--MTGHGFRGLASTILNEKGF  349
            L++ +G+   +F  ++ P + +SENT+  AL  MGY +   + GHGFR++A + L E G+
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  350  -NSDWIERQLAHSEQDGVRAAYNH-AEYLSERHRMMQWWADYLD  391
             + D +ERQ++H E++GVRAAY H AE L ER+ M+QWWAD+LD
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

445) MYA_0364 in NC_017920


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  257 bits (959),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 271/404 (68%), Gaps = 20/404 (4%)

Query  4    KPLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPAT  63
             +LTDAK R A+     + KL DG+G++L ++++GS+ WRL+YR+ GKE+ L++G YP  
Sbjct  1    MALTDAKIRAAK-PTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEV  59

Query  64   SLADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSGSH  123
            SL++AR++RDEA++L++EG +P  ++   K    +  Q +FE +A  W  +++  W+ SH
Sbjct  60   SLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSH  116

Query  124  ANRVKKQLDREVFPLIGQRPISSIGAPDLLAVIRRIEGREAFETARKTLQTCGQVFRYAV  183
            +++V K L+ +VFP+IG+R I+++ +PDLL  +R  E+++ +E A +  Q  + V RYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  184  ATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIAAYEGEPETRLALRFLALTF  243
             ++    +P+ D+ GAL +V  +H + ++ S LPELL  I++Y G+P T+LA+ +  L F
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  244  VRTIELRQAEWTEIDLERREWRIPAEK------------MKMRRVHIVPLAEQTIALLAE  291
            +R+ ELR A W+EID++   W IPAE+             KMR  H+VPL+ Q +A+LAE
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  292  LRALTGHRRWLFPNSRRPLQQMSENTILYALYRMGYRSR--MTGHGFRGLASTILNEKGF  349
            L++ +G+   +F  ++ P + +SENT+  AL  MGY +   + GHGFR++A + L E G+
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  350  -NSDWIERQLAHSEQDGVRAAYNH-AEYLSERHRMMQWWADYLD  391
             + D +ERQ++H E++GVRAAY H AE L ER+ M+QWWAD+LD
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

446) Rfer_1354 in NC_007908


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 261/409 (64%), Gaps = 27/409 (6%)

Query  1    MSLTDTAIKKAKPGDKPVKLSDGKGLYLLVNPVGSKLWRWKYRFLGKEKVMSLGAYPDVS  60
            M+LTD+ I+ AKP DK+ KL+DG G++LLV+P GS+ WR +YR+LGKEK ++LG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQARDGMGAARKLLASGTDPMAQRATDKITKQASAENSFQSVALLWWDHWHGAK---SA  117
            L++AR   + ARKL++ G DP  Q+ + K+   +  + SF+ +A     +WH+++   + 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVV--PDLQLSFEHIA----RRWHASNKQWAQ  114

Query  118  RHADDVMRRLKADVFPAIGARPVSEIQAHELVGMVQTISKRGALDIAKRALQTSGQVFRY  177
             H+D V++ L ++VFP IG R ++ +++ +L+  V++   +   +IA R  Q  + V RY
Sbjct  115  SHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRY  174

Query  178  AVAHGLAQRNPASDIKPSDVLASRKAANYARISAKELPELLRHIEGYAGAAVTRLAMKLM  237
            AV  G+ + NPA D+  ++ L++ K  + + +    LPELL +I +Y G +VT+LA+ L 
Sbjct  175  AVQSGIIRYNPALDM--AGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLN  232

Query  238  ALTFVRTSELIGARWAEFDLEARRWDIPASR------------MKMKTPHIVPLSTQAVN  285
             L F+R+SEL  ARW+E+D++   W IPA R             KM+TPH+VPLS Q V 
Sbjct  233  LLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVA  292

Query  286  VLQTLQLVSGRGTLLFPGERDHEKSMSNNTILGALDRMGYKGR--MTGHGFRGVASTLLH  343
            +L  LQ  +G   L+F G +D  K++S+NT+  AL  MGY     + GHGFR++A + L 
Sbjct  293  ILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  344  EMGF-DHAHIELQLAHQERNEVSAAYNH-ATYLKQRTKMMQHWADYLDS  390
            E G+  +  +E Q++HQERN V AAY H A  L +R  M+Q WAD+LD+
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

447) Ppro_2300 in NC_008609


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  256 bits (955),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 271/411 (66%), Gaps = 24/411 (5%)

Query  7    PLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGTYPEISL  66
            +L+D ++R AKP +K   L DG+G++LL+ P G++ WRL+Y ++GKEK LALG YPE+SL
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  67   ADARQRREDARKQVANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNK--SESY  124
            ++AR +R++ARK +++G+DP E K+A+KV ++   + SFE IAR WH+    NK  ++S 
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHAS---NKQWAQSH  116

Query  125  RDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRIEGRGALETAHRTRSACSQVLRYAV  184
             DK+L ++E +VFP IG   +  L++P+LL ++R  E++   E A R +   S V+RYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  185  ATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKLAPLL  244
             +G    + A D+ GAL   K+ HR+AL  ++ ++ LL  I+ Y+G    + A+ L  L+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  245  FVRPGELRKAEWSEVDFKATEWRIPGDK------------MKMKNDHIVPLASQAVEILK  292
            F+R++ELR A WSE+D+  + W IP+++             KM+  H+VPL+ Q V IL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  293  ELYPLTGHSKFLFPSPRSPLRPMSDNAILSALRRMGFE-KDEMSGHGFRAMA-RTILDEV  350
            EL   +G++ ++F +++ P +P+S+N++  ALR MG++  +++ GHGFRAMA  ++++  
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  351  LHVRPDFIEHQLAHAVRDPNGRAY-NRTAHLAERKKMMQAWADYLDDLKTR  400
            L  R D +E+Q++H  R+    AY +++ HL ER+ M+Q WAD+LD  + R
Sbjct  356  LWSR-DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405

448) Fraau_1988 in NC_017033


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  255 bits (954),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 172/406 (43%), Positives = 272/406 (67%), Gaps = 20/406 (4%)

Query  1    MPLTDTAARKAAPRDKSYRLPDGGGMYLEVMPNGSRYWRLKYRFGGKEKRLALGVYPGIS  60
            M+LTD+  R A P DK+Y+L DG+GM+L V PNGSRYWRL+YR+ GKEK LALGVYP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   ladarkrredarrlladGIDPGAARKEAKQEATAEAGGAVTFEQVARQWLARQDV-AEVT  119
            L++AR +R++AR+L+++G+DP   ++  K  +  +    ++FE++AR+W A +   A+  
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ----LSFEHIARRWHASNKQWAQSH  116

Query  120  ANKNQWLLEEYLFPSIGQRPIADITPRELLAALRETEDKGLLETARRSKIKAGQVFRYAI  179
            ++K    LE  +FP IG+R I+ +   +LL ++R +E K + E A R + + + V RYA+
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  180  IEGLCEADPMASLRGALKTTRNRHHAAITDPVQIGGLMRAMDGFAGTFTVRCALLLSALL  239
              G+   +P   + GAL T + +H++A+ D  ++  L+  ++++ G    + A++L+ L+
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  240  FVRPGELRKAEWAEMDLDGAMWRIPGEK------------MKMGAPHLVPLSEQALAILR  287
            F+R++ELR A W+E+D+D AMW IP+E+             KM +PHLVPLS Q +AIL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  288  DLHGLTGHARYVFSGLRTDSRPMSENTVNTALRALGYDKA-TMTAHGFRSMAATRLNEMG  346
            +L+  +G+   +F+G +   +P+SENTVN ALR +GYD +  + +HGFR+MA + L E G
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  347  -WNADAIERQLAHAESNKVRDAYTSQAQYLPERQKMMQAWADYLDS  391
             W+ DA+ERQ++H E N VR AY  +A+ L ER+ M+Q WAD+LD+
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

449) BTI_1100 in NC_021173


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  255 bits (951),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 170/405 (42%), Positives = 268/405 (67%), Gaps = 13/405 (3%)

Query  1    MPLTDTAIKNAKPADKPMRLFDGGGLYLEIAPSGGKWWRLKYRFGGKEKRISLGVYPDVP  60
            M+LTD+ I+ AKP+DK+ +L DG+G++L + P+G++ WRL+YR+ GKEK ++LGVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKEARERHDKARALLDGGADPGeakkaekraarLSTENSFEAVAREWHAKYAPSWSASHG  120
            L EAR ++D AR L+  G DP E K+A K  + L  + SFE +AR WHA     W+ SH+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  ARLLRRLEVDAFPWIGGKPIAELAPPDVLDVLRRVEKRGALETAHRLHANVGQVCRYAVA  180
             ++L+ LE + FP IG + I+ L  PD+L  +R  E +   E A RL+  ++ V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAARDVTADLRGALPPVQQEHMAAITDPKQVAELLRAIDGYQGTLPVSCALRLAPLLF  240
            +G    + + D+ GAL  V+++H +A+ D  +++ELL  I++Y+G      A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  QRPGELRAAEWAEFDLDAGTWEIPSDR-----MKRTKQGKAAGGAHIVPLPLQAVAILRE  295
             R++ELR A W+E+D+D + W IP++R     +K + +G     +H+VPL+ Q VAIL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  296  LQLLTGNGRLLFPSVRTKDRPMSDNTVNAALRRLGYD-GDTMTGHGFRAMARTILDEVLG  354
            LQ  +G+  L+F + +   +P+S+NTVN ALR +GYD  + + GHGFRAMA + L E  G
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-G  355

Query  355  V-PAPIIEAQLAHTVKDPLGRAY-NRTAHLQQRREMMQKWADYLD  397
            + +   +E Q++H  ++ +  AY +++ HL++RR M+Q WAD+LD
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

450) AMBLS11_09695 in NC_018692


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  254 bits (947),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 165/409 (41%), Positives = 266/409 (66%), Gaps = 24/409 (5%)

Query  1    MPLTDRAIKAIKPADKDQWVSDKDGLRLLVKSNGNKFWRLKYRFAGKQKTLALGSYPETP  60
            M+LTD  I+A KP+DK   ++D  G+ LLV +NG+++WRL+YR+ GK+KTLALG YPE +
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSKARELTMQARLTVKSGVDPAAEKRE-KVREEQRLNEDLFMNVAMEWWEQQSGGWTENH  119
            LS AR    +AR  +  GVDP  +KR  KV  + +L+   F ++A  +W+  +  W+++H
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLS---FEHIAR-RWHASNKQWAQSH  116

Query  120  ARRVWLRLKDNSFTALGKRPISTIRPRDVIETVREIEKRGALDVAQRVLQDIGRVCRYAV  179
            + +V   L  + F  +G+R I+T+   D++  VR  E +   ++A R+ Q I+ V RYAV
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  180  QTERINFNPASELSDVLKSRKVEHRASLPREQLPAFVKALSTYEEKGRLLTKYAIQLLVL  239
            Q+  I +NPA ++++ L + K +HR++L   +LP ++  +++Y  KG+ +T+ A+ L +L
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSY--KGQPVTQLAVMLNLL  234

Query  240  TFVRPGELRGARWEEFNFDDNIWRIPADR------------MKMRSEHIVPLSQQALQVI  287
             F+R++ELR ARW E+++D+ +W IPA+R             KMR+ H+VPLS+Q + ++
Sbjct  235  VFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAIL  294

Query  288  ELIKPITQQYQLLFPSERDRNDPMSDNTMRRAIFKLGYDGTKPGKAKANPHGFRATASSI  347
              ++  + +  L+F + +D   P+S+NT+ +A+  +GYD T+        HGFRA A S 
Sbjct  295  AELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQ----DVCGHGFRAMACSA  350

Query  348  LNEQGF-NPDAIERQLSHMERNGVRAAYTHHARYLDERKEMMQWWADYV  395
            L E G+ + DA+ERQ+SH ERNGVRAAY H A  L+ER+ M+QWWAD++
Sbjct  351  LIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

451) PSPTO_5344 in NC_004578


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  254 bits (947),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 171/404 (43%), Positives = 264/404 (66%), Gaps = 19/404 (4%)

Query  1    MPLSDTTIRTAKPKDKLYRLTDANGLCLEIAPSGSKLWRYRYRFNGKAKMLALGAYPAVT  60
            M+L+D+ IR+AKP DK Y+LTD+ G+ L + P+GS+ WR RYR+ GK K LALG YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LLKARQLRDSARQLLVEGNDPGEHKKTAQQAQKVEGLTFETLAREWFAYNSPRWAESTTY  120
            L  AR  RD AR+L+ EG DP E+K++ +    ++ L+FE +AR W A ++ +WA+S + 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHA-SNKQWAQSHSD  118

Query  121  KAKLYMENDLIPGIGARPVKALTRPDLVDLVRKVEARGTLNAAGKIRQWLHQIFRYGLAK  180
            K    +E +++P IG R + +L  PDL+  VR  EA+   + A++++Q++  + RY++  
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GVVESNPATDLDVVAAPQKAPRHHPHVPFSELPELLEICDGSKINTLTRCAIHLLVLTAV  240
            G++  NPA D+    +  K  +H+P + +S LPELL   ++ K + +T+ A+ L +L  +
Sbjct  179  GIIRYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRNAPWSEFDLDAATWAIPKER------------MKARRPHVVPLPTQAVDILRQL  288
            R++ELR A WSE+D+D A W+IP ER             K R PH+VPL+ Q V IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QPITGRYPLVFAGQHNPSRPMSENTINKALRLLGYENRQT--GHGFRHLLSTELNGRGY-  345
            Q  +G   L+F+G H+P +P+SENT+NKALR++GY+  Q   GHGFR +  + L   G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  346  NKDWIERQLAHGDADGIRDTYNH-ASYLEQRRGMMQAWADSIDA  388
            ++D +ERQ++H + +G+R +Y H A  LE+RR M+Q WAD +DA
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

452) YPK_0061 in NC_010465


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  254 bits (947),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 265/407 (66%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQarekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHQLRADRWSLRYR  120
            L++AR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPLELLETLRKMEKRGALEKMRKVRQRCGEVYRYAII  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlataltppKKQHFPFLTAEELPYFLKNLAGYTGSVitktatkiilltaV  240
            +G   YNPA D+A ALT  K+QH P L    LP +L  +++Y G  +T+ A  + LL  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFTRWQDIDLEKGIWEIPAE------------VMKMKRPHVVPLSKQVIELFNSL  288
            R+ ELR++RW +ID+++++W IPAE              KM+ PH+VPLSKQV+ ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPLSGHYELVFIGRNDHRKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEKGYN  346
            +  +G+  L+F G +D RKPIS ++VN+ + ++GY     + GHGFR    + L E G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHIDKNAIRGTYNH-AQYMDGRREMMQWYADYLDA  388
              W    +E Q++H ++N++R++Y H A+ ++ RR M+QW AD+LDA
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

453) Despr_0274 in NC_014972


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  253 bits (945),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 175/403 (44%), Positives = 269/403 (67%), Gaps = 14/403 (3%)

Query  2    LVDTAIKNAKPKEQPYKLTDGKGLYLLVKSTG-KYFRFNYRFQDKQKTLALGVYPDVSla  60
            L D+ I+ AKP +++YKLTDG G++LLV + G +Y R+ YR+ +K+KTLALGVYP+VSL+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  61   garerlaearkliaDGIDPGEQRKMDKEAATNLNSVEAVAREWFLKNKHTWTDNHARDII  120
             AR +  EARKLI++G+DP EQ++  K  +    S E +AR W   NK+ W+++H+  ++
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVL  121

Query  121  TRLEANVFPWLGRTPIADVTAPMLLAVLRRIEDRGAIETAHRIKQMCGQVFRYAVATGRA  180
              LE++VFP +G   I+ + +P LL  +R  E +   E A R++Q  + V RYAV +G  
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  181  ERDPSADLRGALPPPPSKSMATITDPKGVSALLRAIRGYKGEIITRCALRLAPLTFVRPG  240
              +P+ D+ GAL     +  +++  ++ ++ LL  I +YKG+ +T+ A+ L  L F+R++
Sbjct  182  RYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRHAEWADIDLDRAEWKIPPEKRKL------KKALKAIPQNFHFVPLSRQALAVLRELQ  294
            ELR A W++ID+D A W IP+E+  L       ++ K      H+VPLS+Q +A+L ELQ
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTP--HLVPLSKQVVAILAELQ  298

Query  295  PLTGEGRYVFPSLRTGERPMSENTVNAALRRMGY-AKDEMTGHGFRAMASTLLHEQG-WP  352
              +GE   +F + +   +P+SENTVN ALR MGY + +++ GHGFRAMA + L E G W+
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  353  SDVIERQLAHKERNSVKAAYNY-AQHIPERRKMMQAWADYLDA  394
             D +ERQ++H+ERN+V+AAY   A+H+ ERR M+Q WAD+LDA
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

454) SU5_02989 in NC_017623


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  252 bits (941),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 255/381 (67%), Gaps = 25/381 (6%)

Query  2    GLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVSLAQARAKRDEARSMLAKGINPSEA  61
            G+ LL++  GS+ WR+RYR+ GK K +++GVY +VSL++AR+KRDEAR +++ G++P E 
Sbjct  25   GMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQ  84

Query  62   RKANKIALQFAHENSFESVAREWHSSKKTTWSEGYAKEVLNCMERDIFPFIGQRPIEQIE  121
            ++A+K+  ++  + SFE +AR WH+S+K  W+++ +  VL+ +E ++FPFIG+R I  ++
Sbjct  85   KRAKKVVPDL--QLSFEHIARRWHASNKQ-WAQSHSDKVLKSLETHVFPFIGNRDITTLN  141

Query  122  PLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVATGRAKYNFAPDLAIALNKPKTQHF  181
              +LL  ++  E +   E +S++++R + V+RYAV +G  +YN A D+A AL   K QH 
Sbjct  142  TPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHR  201

Query  182  PFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGVRTIELRAAEWAEFDLDNALWEIPK  241
            P L  S LPE+++ +++Y+G  VT+ A  L +L  +R+ ELR A W+E+D+DNA+W IP 
Sbjct  202  PALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPA  261

Query  242  ER------------MKKRRPHLVPLSTQAISILKKLQEITGNYSLVFPGRNDVRKPMSEA  289
            ER             K R PHLVPLS Q ++IL  LQ  +G+ +L+F G +D RKP+SE 
Sbjct  262  EREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISEN  321

Query  290  SINKVIKLLGYHGR--LTGHGFRHTMSTILHELGFESAW----IEMQLAHVDKNSIRGTY  343
            ++NK ++++GY+    + GHGFR    + L E G+   W    +E Q++H ++N++R++Y
Sbjct  322  TVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL---WSRDAVERQMSHQERNGVRAAY  378

Query  344  NH-AQYLENRRKMMQIYSDML  363
             H A+ LE+RR M+Q  +D L
Sbjct  379  IHKAEHLEERRLMLQWWADFL  399

455) Dsui_1791 in NC_016616


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  251 bits (938),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 177/414 (43%), Positives = 277/414 (67%), Gaps = 22/414 (5%)

Query  1    MALTELAIKASKPADKPYKVSDERGLFLLVNPNGSKYWRVKYRFLGKEKLLALGVYPEVS  60
            MALT+  I+A+KP+DK+YK++D  G+FLLV+PNGS+YWR++YR+LGKEK LALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKQarerrddarrllaNGVDPGFHKQATKMAMVANAANSFEAVAREWWAKKSVGWSASYS  120
            L +AR +RD+AR+L+++GVDP  +K+A K  +V++   SFE +AR W A +   W+ S S
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKK--VVPDLQLSFEHIARRWHASNK-QWAQSHS  117

Query  121  NKVIRLFERDVFPWVGARPIADITAPEMLAVVRRIEARGVIE-TAHLALRVSGQAFRYAV  179
            +KV++ +E +VFP +G R I+ + +P++L  VR  EA+ + E +++L  R+S+   RYAV
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISA-VMRYAV  176

Query  180  VTGRAERSPVGDLRGALPPVKVSHFAAITEPEKVGELLRAIDAFSGTFVVLCALKLAPLF  239
             +G    +P  D+ GAL  VK  H +A+ +  ++ ELL  I+++ G  V   A+ L  L 
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  240  FVRPGELRHARWRDFDLERGEWRYLV--------------TKTQTQHLVPLATQAIGILR  285
            F+R++ELR ARW ++D++ + W                  +K +T HLVPL+ Q ++IL 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  286  ELYALTGRGDFVFPG-RDRANPMSGATINAALRRMGYNTQTDITGHGFRAMARTILAEEL  344
            EL + +G  +++F G +D  +P+S  T+N ALR MGY+T  D+ GHGFRAMA + L E  
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  345  HVKPEVIEHQLAHRVPDNLGTAY-NRTKFLKERRVMMQEWANYLDNLKENVISP  397
                + +E+Q++H+  + + +AY +++  L ERR+M+Q WA++LD  +E  ISP
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISP  409

456) CSSP291_04405 in NC_020260


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  251 bits (937),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 268/409 (66%), Gaps = 25/409 (6%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDIS  60
            M+L   ++ +AKP DKAYKL+DG+G++L+V+ NGS+YWR++YR+ GKEK L++G YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKNYA  120
            L+EARTKRDEARK ++++ DP E K+A  +   L +  +FE IA  W  ++   W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYAIV  180
            D V +++  +VFPF+G++ +  ++  +LL  ++  E +   E+AS+++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmltgl  240
            +G   YNPA D+++AL    +QH P L  + LPE+L +++ Y G  VT LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtvELRMAEWSEIDFENHIWEIPKSR------------MKMRRPHIVPlsaqslaalrql  288
            R+ ELR A WSEID++N +W IP  R             KMR PH+VPLS Q +A L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  kqlTGTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKR--ATGHGFRHTMSTILHEEGFN  346
            +  +G   +IF+G +D  KP+SE ++N  ++ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKEMMQWYGDYLDGLR  390
              W    +E Q++H ++N++R++Y H A+ LE R+ M+QW +D+LD+ R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

457) ECL_03688 in NC_014121


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  251 bits (937),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 268/409 (66%), Gaps = 25/409 (6%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDIS  60
            M+L   ++ +AKP DKAYKL+DG+G++L+V+ NGS+YWR++YR+ GKEK L++G YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKNYA  120
            L+EARTKRDEARK ++++ DP E K+A  +   L +  +FE IA  W  ++   W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYAIV  180
            D V +++  +VFPF+G++ +  ++  +LL  ++  E +   E+AS+++QR S V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmltgl  240
            +G   YNPA D+++AL    +QH P L  + LPE+L +++ Y G  VT LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtvELRMAEWSEIDFENHIWEIPKSR------------MKMRRPHIVPlsaqslaalrql  288
            R+ ELR A WSEID++N +W IP  R             KMR PH+VPLS Q +A L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  kqlTGTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKR--ATGHGFRHTMSTILHEEGFN  346
            +  +G   +IF+G +D  KP+SE ++N  ++ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  TAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKEMMQWYGDYLDGLR  390
              W    +E Q++H ++N++R++Y H A+ LE R+ M+QW +D+LD+ R
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

458) ELI_09990 in NC_007722


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  250 bits (932),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 172/415 (42%), Positives = 273/415 (66%), Gaps = 29/415 (6%)

Query  1    MVLTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYRIDGREKKLAIGRYPEIG  60
            M LTD  IR AK+  KAYKL+D++G+FLLV+  G++ WR++YRI G+EK LA+G YPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearrrrdaareqlaqGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWA  120
            L+EAR +RD AR  +++G DP  +K+ +K  + L  + +F  +A     +R H +++ WA
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIA-----RRWHASNKQWA  113

Query  121  PATAKRCEYLLSVLNSS----IGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGS  176
             + + +   +L  L++     IG+  I+ ++ +D+L +VR  E+K   E A R  Q  ++
Sbjct  114  QSHSDK---VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISA  170

Query  177  VFRYAVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAM  236
            V RYAV ++ ++ +P+ D+ GAL      H  + LD +   ELL  I++Y GQP+T+LA+
Sbjct  171  VMRYAVQSGIIRYNPALDMAGALTTVKRQH-RPALDLSRLPELLSRIGSYKGQPVTQLAV  229

Query  237  QLAPHVFVRPGELRHAEWSEIDFDEALWTIPASK------------TKMRKDHLVPLSRQ  284
             L   VF+R++ELR A WSEID+D+A+WTIPA +            +KMR  HLVPLS+Q
Sbjct  230  MLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQ  289

Query  285  AIAILEMAHRLTGPDGYVFPSVRTRKRPMSDNTINAGLRRLGY-ATDEMTAHGFRAMAST  343
             +AIL   +  +G +G +F + +  ++P+S+NT+N +LR +GY +T+++ +HGFRAMA +
Sbjct  290  VVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACS  349

Query  344  LLNESGKWNPDAIEGALAHGDSDKVRAAY-HRGAHWKERVKMMKWWSDYLDQLRE  397
             L ESG W+ DA+E  ++H + + VRAAY H++ H  ER  M++WW+D+LD  RE
Sbjct  350  ALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

459) EAE_06555 in NC_015663


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  250 bits (932),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 261/405 (65%), Gaps = 25/405 (6%)

Query  1    MKLTARQVDTAKPKEKPYKLSDGGGLYLEVATSGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ +AKP +K+YKL+DG+G++L V  +GSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaeardkreaakkVLAAGNDPGEVKKAEKIAQKLGFENTFEAIAREWHQVRADRWSLRYR  120
            L+EAR KR+ A+K+++ G DP E K+A K+   L +  +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWH-ASNKQWAQSHS  117

Query  121  EEIIDTFEKDVFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            + ++ ++E +VFP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSIITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVALFESL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVVA++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFIGRNDRTKPISKESINQVIELLGYKGR--VTGHGFRHTMSTILHEEGFD  346
            +  +G   L+F G +D  KPIS +++N+ + ++GY     V GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGAYNH-AQYLDGRKEMMQWYADYI  386
              W    +E Q++H ++N++R+AY H A+ L+ R+ M+QW AD++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

460) EAE_24695 in NC_015663


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  250 bits (934),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MTLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGIYPDIS  60
            M+L   ++ +AKP DKAYKL+DG+G++L+V+ NGS+YWR++YR+ GKEK L++G+YP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEARTKRDEARKLLANDKDPGEVKKATLLAKKLSVTNTFEAIALEWYSAKVSGWSKSYA  120
            L+EARTKRDEARKL++++ DP E K+A  +   L +  +FE IA  W +++   W++S +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN-KQWAQSHS  117

Query  121  DYVKRAFKNNVFPYLGSQPVNEIKPLALLSVLQKMEKRGATELASKVRQRCNEVFRYAIV  180
            D V +++  +VFP++G++ +  ++   LL  ++  E +   E+AS+++QR + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNPAADLGSALQGHEKQHYPFLTAAELPDFLQKLSNYSGSlitllatrllmltgl  240
            +G   YNPA D+++AL    +QH P L  + LP++L ++++Y G  +T LA  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  rtVELRLAEWREIDFDNRIWEIPKTR------------MKMKRPHVVPlsaqslsalrql  288
            R+ ELR A W EID+DN +W IP  R             KM+ PH+VPLS Q ++ L +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KVLTGNYKLIFAGRNDVNIAMSEASINMVIKRIGYDKR--ATGHGFRHTMSTILHEQGFN  346
            +  +G+  LIF+G +D   ++SE ++N  ++ +GYD      GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNSIRGTYNH-AQYLEGRREMMQWYADFMDA  388
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW ADF+DA
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

461) GBP346_A3075 in NC_012695


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  247 bits (923),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 167/405 (42%), Positives = 258/405 (64%), Gaps = 13/405 (3%)

Query  1    MALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVS  60
            MALTD  IR AKP +K  KL D++G+FLLV P G++ W L+YR+ G+EK+LA+G YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LVEARKKRDAAREKLAANIDPGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHG  120
            L EAR KRD AR  ++  +DP E K+A K    L  + SFE IAR WHA     W++SH+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  NRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGALETAHRLRGNVGQVCRYAVA  180
            +++L+ LE + FP IG + ++ L  PD+L  +R  E +   E A RL+  ++ V RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF  240
            +G    + + D+ GAL     +H +A+  ++ L ELL  I+SY+G      A+ L  LVF
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  QRPGELRAAEWEEFDLDAATWEIPSAR-----MKRRKKDKASGGAHIVPLASQAISVLRE  295
             R++ELR A W E+D+D A W IP+ R     +K   ++     +H+VPL+ Q +++L E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  296  LHLLTGNGRYLFSGARSKTRPMSDNTVNAALRRLGYDSS-TMTGHGFRATARTIMAEQLG  354
            L+  +G+   +F+GA+   +P+S+NTVN ALR +GYD++  + GHGFRA A + + E  G
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-G  355

Query  355  I-PKEIIEAQLAHAVKDPLGRAY-DRTVYLAQRGEMMQKWANYLD  397
            + +++ +E Q++H  ++ +  AY +++  L +R  M+Q WA++LD
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

462) P12B_c3788 in NC_017663


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  247 bits (923),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 170/408 (42%), Positives = 264/408 (65%), Gaps = 25/408 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYKNTFEAIAREWHQLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLAGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVQLFGSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV +++ L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLNPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G N L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYADYITSN  389
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW AD++ +N
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDAN  402

463) Xaut_3444 in NC_009720


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  247 bits (923),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 172/413 (42%), Positives = 271/413 (66%), Gaps = 30/413 (7%)

Query  1    MPLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITS  60
            M+LTD+  R+AK  +K+YKL+DG+G++LLV+P+G+RYWRL YR+ GK+KTLALG YP  S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARKGRETAKEQLAARIDPSearraekraarLHSSRIFEVVAQEWFAAKLPGWVPSYS  120
            L++AR  R+ A+  ++  +DP E +RA K  + L+ S  FE +A+ W A++   W  S S
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLS--FEHIARRWHASN-KQWAQSHS  117

Query  121  DRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGAIELAKREMQVIGQIFHFAIA  180
            D++L  LE++++P +G+R I+ ++ P++L  +R  E++   E+A R  Q I+ + ++A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  SGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF  240
            SG  + +P+ D+ GAL +  RQ H+ AL    LP++L  +++Y G+P+T+LA+ L +L F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQ-HRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRTTELRAARWSEFEGLDGPEPLWRIPPER------------MKMRFEHLVPLSPQAVAV  288
            +R++ELR ARWSE   +D  +++W IP+ER             KMR  HLVPLS Q VA+
Sbjct  237  IRSSELRYARWSE---IDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  289  LQELRPLAGRSPQLFPSPSKE-GFMSNNTMLFAMYRMGYHGRATV--HGFRGVASTWLNE  345
            L EL+  AG +  +F ++      +S+NT+  A+  MGY+    V  HGFR++A + L E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  346  AGYHPDW----IERQLAHDERNEVRGAY-NSAQYLTGRRQMMCDWANFLDGLR  393
            +G    W    +ERQ++H+ERN VR+AY + A+ L  RR M+  WA+FLD+ R
Sbjct  354  SGL---WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

464) Fraau_3064 in NC_017033


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  247 bits (923),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 179/403 (45%), Positives = 267/403 (67%), Gaps = 24/403 (5%)

Query  8    LTALAIKAAEP-GKHF---DGGGMFLHITTKG-RYWRLKYRVAGKEKLLALGVYPEVSLa  62
            LT   I+AA P +K +   DG+GMFL +  +G RYWRL+YR+ GKEK LALGVYPEVSL+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  63   earkrrdearrVIGEGGDPSAIRRTTKVTAVLATANTFQAVAEEWLAQHKARMAPATYNK  122
            EAR +RDEAR++I+EG DP   +R+ KV + L    +F+ +A  W A +K +  + + +K
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQWAQSHS-DK  119

Query  123  AVWMLGDLVYPWLGRRPISDIEAPELLAVLRRIEARGAHTTAHRTKQRCGQVFRYAIATG  182
             +  L   V+P +G R I+ +++P+LL  +R  EA+     A R +QR + V RYA+ +G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  183  RAKRDPSADLRGALAPLNPTSRAAITDPLRVGELLRAIDGYSGTFPVICALRLAPMLFVR  242
              + +P+ D+ GAL+ ++   R+A+ D  R+ ELL  I++Y G      A+ L  ++F+R
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  243  PGELRHAEWAEFDLDQSLWRIPAEK------------MKMRDEHLVPLPDQALAILRDLL  290
            ++ELR A W+E+D+D+++W IPAE+             KMR  HLVPL+ Q +AIL +L 
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  291  PLTGPDGFLFPGERSASRPMSENTVNAALRRLGYD-KDTMTGHGFRAMASTRLNELG-WS  348
              +G +G++F G + + +P+SENTVN ALR +GYD  + + GHGFRAMA + L E G WS
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  349  PDVIERQLAHAERNKVRAAY-NRAQYLPERQRMMQAWADYLDS  390
             D +ERQ++H ERN VRAAY ++A+ L ER+ M+Q WAD+LD+
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

465) Galf_2041 in NC_014394


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (918),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 172/385 (45%), Positives = 249/385 (65%), Gaps = 21/385 (5%)

Query  22   DGDGMYIEVMPSGSKYWRLKYRYAGKEKRLALGVYPEVSLKdarerrdaarKLIANGTDP  81
            DG GM++ V P+GS+YWRL+YR  GKEK LALGVYPEVSL +AR +RD ARKLI++G DP
Sbjct  22   DGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDP  81

Query  82   GEAKQAQKREGKIAAANTFEAVAREWVENRSNDWTAGHKALTLRTLEQDAFPSIGRRPIA  141
             E K+A+K    +    +FE +AR W +  +++W+ +H    L++LE + FP IG R I+
Sbjct  82   CEQKRAKKVVPDLQL--SFEHIARRW-HASNKQWAQSHSDKVLKSLETHVFPFIGNRDIT  138

Query  142  EISSSEVLATVRAIEKRGALEIAGRVLQRCSAVFRYAIATDRCKNNPAFKMSEALKSPTR  201
             ++++++L  VRA E +   EIA+R+ QR SAV RYA+ ++  + NPA+ M+ AL +  R
Sbjct  139  TLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKR  198

Query  202  SHYNTIEKGGFPKLLRDIDGYQGSPMTTYILQLMALTFTRTGELVNAEWKEIDLDRAEWL  261
             H  +++ + +P LL  I++Y+G P+T   + L  L F R++EL  A W EID+D A W 
Sbjct  199  QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWT  258

Query  262  IPAER------------MKMRRPHLVPLSVQAVAVFREAAKLSGDRVHVFPNRNDPSQPA  309
            IPAER             KMR PHLVPLS Q VA++ E    +G+   +F   +DP +P 
Sbjct  259  IPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPI  318

Query  310  SNAIILRALGRMGY--TGKMTGHGFRSAASTMLNENKSKWGIHRDTIELQLAHVEKNASR  367
            S+  + +AL  MGY  T  + GHGFR+ A + L E+ + W+  RD++E Q++H E+N+ R
Sbjct  319  SENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-GLWS--RDAVERQMSHQERNGVR  375

Query  368  AAYNF-AEYLDERRTMMQQWADHLD  391
            AAY   AE L+ERR M+Q WAD LD
Sbjct  376  AAYIHKAEHLEERRLMLQWWADFLD  400

466) KO11_04405 in NC_017660


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFKSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNS  388
              W    +E Q++H ++N++R++Y H A+ LE R++M+QW +++L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

467) EKO11_0064 in NC_016902


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFKSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNS  388
              W    +E Q++H ++N++R++Y H A+ LE R++M+QW +++L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

468) LY180_18845 in NC_022364


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFKSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNS  388
              W    +E Q++H ++N++R++Y H A+ LE R++M+QW +++L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

469) ECW_m3936 in NC_017635


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFKSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNS  388
              W    +E Q++H ++N++R++Y H A+ LE R++M+QW +++L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

470) WFL_19235 in NC_017664


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 263/407 (65%), Gaps = 25/407 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            L+EAR KR+ A+KL+S G DP E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   +++QR + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFKSL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRKVMMQWYGNYLNS  388
              W    +E Q++H ++N++R++Y H A+ LE R++M+QW +++L++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

471) Lcho_2977 in NC_010524


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 264/416 (64%), Gaps = 24/416 (5%)

Query  6    NLTDTAIRKATPGEKPRKLADGGGLYLELQPSGARYWRIKYRLDGKENRLSLGVYPAVSL  65
             LTD+ IR A P +K+ KL+DG+G++L ++P+G+RYWR++YR+ GKE+ L+LGVYP VSL
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  66   adarrrrdEVRALIAAGTDPSQTRKDTKAAKVQVQVIATLQAGGEPLPGTFEAVALAWLV  125
            ++AR +RDE R LI+ G DP + ++  K       V++ LQ        +FE +A  W  
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKK-------VVPDLQL-------SFEHIARRWHA  107

Query  126  IRRGDWAPRYFDKIEARLANDVFPYIGHLPVADVTPPALLVMLRRIEARGAIETARRVRE  185
              + +WA    DK+   L  +VFP+IG+  ++ +  P LL+ +R  EA+   E A R+++
Sbjct  108  SNK-QWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQ  166

Query  186  TCSLVFRFAVAEGNVTSDPARDLAGALKTHTTRHIPAITDPQRFGELLRSIDAYRGTPAV  245
              S V R+AV  G +  +PA D+AGAL T   +H PA+ D  R+ ELL  I++Y+G P  
Sbjct  167  RISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVT  225

Query  246  RTALQLAALVFLRPGAELREAQWNEFDLDAGTWLVPAAR-----MKRRKTGKENGPDHLV  300
            + A+ L  LVF+R ++ELR A+W+E+D+D + W +PA R     +K    G      HLV
Sbjct  226  QLAVMLNLLVFIR-SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLV  284

Query  301  PLSRQAVALLRDLHPLTGRGAYLFPGVRHRDQPMSENTLNAALDAMGY-TGDEHRAHGFR  359
            PLS+Q VA+L +L+  +G  + +F G ++  +P+SENT+N AL  MGY T ++  +HGFR
Sbjct  285  PLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFR  344

Query  360  SSARTMLHERLNLPTEAIEAQLAHSVPDALGRAY-NRTEFVAQRRLMMQTWADYLD  414
            + A + L E    + +A+E Q++H   +++  AY +++E + +RRLM+Q WAD+LD
Sbjct  345  AMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

472) XALc_1804 in NC_013722


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  244 bits (909),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 180/408 (45%), Positives = 266/408 (66%), Gaps = 23/408 (5%)

Query  1    MPLTDTAIRKTKLGVAPLKLRDGGGLYLLMRPDGARWWRWDYRRPNTGKRNTLSLGTYPD  60
            M+LTD+ IR +K    + KL DG+G++LL++P+G+R WR  YR    GK +TL+LG YP+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPE  58

Query  61   TGladardkrdaarkllaaGVDPGEQRKRAKEQAAMVAPAGETFETVAREWMARQTV-AR  119
             +L++AR KRD ARKL++ GVDP EQ++  K    +V+    +FE +AR W A +   A+
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKK----VVPDLQLSFEHIARRWHASNKQWAQ  114

Query  120  VTAEKNRWLLETFLFPEIGSRPIGEITPRELLDALRKIEATGKLETAGRAKIKAGQVFRY  179
              ++K    LET +FP IG+R I  +   +LL ++R  EA    E A+R + + + V RY
Sbjct  115  SHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRY  174

Query  180  AMLEGKAEIDPTASLRGALKTVKARHHASITDPVKIGQLLRAIEGFIGQPVTHAALKLAP  239
            A+  G    +P+  + GAL TVK R+H +  D  ++ +LL  I ++ GQPVT+ A+ L  
Sbjct  175  AVQSGIIRYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LVFVRPGELRAAEWGEIDLDAAMWRIRPER------------MKMKAAHLVPLSSQAVAI  287
            LVF+R++ELR A W+EID+D AMW I +ER             KM+++HLVPLS Q VAI
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LRDLHALTGGGPHVFPGLR-PNRPMSENTINAALRGLGY-ASDEMTGHGFRSMAATRLNE  345
            L +L++ +G    +F G + P +P+SENT+N ALR +GY +++++ GHGFR+MA + L E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  346  MG-WNPDAIERQLAHAETNKVREAYTHAAQYLPERIRMMQAWADYLDG  392
             G W+ DA+ERQ++H E N VR AY H A+ L ER  M+Q WAD+LD+
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

473) C380_06330 in NC_018708


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  244 bits (909),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 167/410 (41%), Positives = 264/410 (65%), Gaps = 29/410 (7%)

Query  1    MPLTDTACKKATCPEGRPSVRLADEKALYLEVTAAGGKYWRWKYRYGGKEKRLALGVYPD  60
            M+LTD+  + A   +   + +L+D  +++L V + G++YWR +YR  GKEK LALGVYP+
Sbjct  1    MALTDAKIRAAKPTD--KAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPE  58

Query  61   VTLAQAREARDQARKVLAGGDDPGQLKRDAKMTSAVHQANTFEAVARVWWE---HWRDGK  117
            V+L++AR  RD+ARK+++ G DP + KR  K+ + ++   +FE +AR W     +W ++ 
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQWAQSH  116

Query  118  SERHAAYAIKRLEADAFPVLGARPIANITAKDLTRMAKAVQDRGAIDLAHRVLQMAGQVM  177
            S++     +K LE++ FP +G R I+ + + DL    +A + +   ++A R+ Q  + VM
Sbjct  117  SDK----VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVM  172

Query  178  RYAVAHDLIERNPATDVKPSDTLRSRRKENYARLGEKELPELLRKIEAYQGGPYTRLAMQ  237
            RYAV  ++I  NPA D+  +++L + ++++ + L+   LPELL +I +Y+G P T+LA+ 
Sbjct  173  RYAVQSGIIRYNPALDM--AGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVM  230

Query  238  LMALTFVRTTELIAARWAEFDLQAAEWRIPPER------------MKMKTPHIVPLSPQA  285
            L  L F+R++EL  ARW+E+D++ A W IP+ER             KM+TPH+VPLS Q 
Sbjct  231  LNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQV  290

Query  286  VEVLKVLHTLSGGRALLFPGERDHDKPMSNNTILKALERMGYKGR--MTGHGFRGMASTI  343
            V +L  L+T +G  +L+F G +D  KP+S+NT+ KAL  MGY     + GHGFR+MA + 
Sbjct  291  VAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSA  350

Query  344  LHEQGY-AHHAIELQLAHQERNEVSAAYNH-ALYLKERRVMMCDWANHLD  391
            L E G  +++A+E Q++HQERN V AAY H A  L ERR+M+  WA+ LD
Sbjct  351  LIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

474) plu0125 in NC_005126


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  244 bits (909),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 259/405 (64%), Gaps = 25/405 (6%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKCLAFGVYPEVS  60
            M LT  +I +AKP +K+YKL+DG+G++L V  NGSRYWRL+YR  GKEK LA+GVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAQarekreaakkllSAGSDLGELKKAEKIAQKLNYDNTFEAIAREWHQLRADRWSLRYR  120
            L++AR KR+ A+KL+S G D  E K+A K+   L+   +FE IAR WH     +W+    
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRRRCGEVFRHAIV  180
            D ++ ++E ++FP+IG+R I+ ++  +LL  +R  E +   E   ++++R + V R A+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSVITKTATQIIMLTGV  240
            +G   YNPA D+A AL+T K+ H P L    LP++L  +++Y G  +T+ A  + +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTQELRFARWEDINFEKRLWEIPAE------------VMKMKRPHIVPMSDQVVELFESL  288
            R+ ELR+ARW +I++++ +W IPAE              KM+ PH+VP+S QVV ++  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  KPITGLYPLVFVGRNDRTKPISKESVNQVIELLGYKGR--LTGHGFRHTMSTILHEEGFN  346
            +  +G   L+F G +D  KPIS ++VN+ + ++GY     + GHGFR    + L E G+ 
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356

Query  347  SAW----IETQLAHVDKNAIRGTYNH-AQYLEGRREMMQWYSDYI  386
              W    +E Q++H ++N++R++Y H A+ LE RR M+QW +D++
Sbjct  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

475) BTH_I0928 in NC_007651


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  243 bits (907),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 178/405 (44%), Positives = 267/405 (66%), Gaps = 25/405 (6%)

Query  47   PLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSl  106
            +LTD K+R AKP++++Y+L+DG G++L V PNGSRYWR++YR+ GKEK  ++GVYPEVSL
Sbjct  2    ALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSL  61

Query  107  aqarqaclaarkllaaGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYAN  166
            ++AR     ARKL++ G DP EQKR  K    ++   SFE +AR W  S+K+ W++  ++
Sbjct  62   SEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNKQ-WAQSHSD  118

Query  167  KVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMT  226
            KV++SLE + FP IG++ +  +++PD+L  VRA EA+ + E A R+ QR  AV +Y++ +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  227  GRCSRNPAADIDAE-TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMAL  285
            G    NPA D+ +  T +K+    +H + +    +P+L+  I++Y G+ VTQLA+ +  L
Sbjct  179  GIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLL  234

Query  286  TFTRTTEMINAEWDEFDERAAEWRIPPDR------------MKMRDPHIVPLSRQALEVL  333
             F R++E+  A W E+D   A W IP++R             KMR PH+VPLS+Q + +L
Sbjct  235  VFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAIL  294

Query  334  AALRELNGNQRLVFYSVQG-RSHISNNTMLYALYRMGYKSRMT--GHGFRGLAATVLREL  390
            A L+   G++ L+F + ++ R  IS+NT+  AL  MGY +     GHGFR++A + L E 
Sbjct  295  AELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES  354

Query  391  GY-SRDVVDRQLAHAERNQVTAAYVH-AEYLPERRKMMQHWADYL  433
            G  SRD V+RQ++H ERN V AAY+H AE L ERR M+Q WAD+L
Sbjct  355  GLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFL  399

476) Mesau_02378 in NC_019973


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  243 bits (908),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 255/405 (63%), Gaps = 22/405 (5%)

Query  1    MALSDVKCRNARPVSKLVKLTDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLIS  60
            MAL+D K R A+P  K  KLTDG+G+ L V+P GSR WRL YR+ GK+K LALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEAREARDTAKRLLLRGIDPALERKLQKASAE--DTFRSIAEDYVDKLKK--EGRADRT  116
            L+EAR  RD A++L+  G+DP  +++ +K  ++   +F  IA       K+  ++++D+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  117  ITKVKWLLDFAYPAFGDKCVREIDPVTILAALRSVEDRGRYESARRLRSTIGSVFRYAIA  176
            +   K L    +P +G++ +  ++   +L ++R+ E +  YE A RL+  I++V RYA+ 
Sbjct  121  L---KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  177  TARADLDPTVALRGALVGPTVTPRAAVTDPMALGGLLRAINAFDGQPTTRAALKLMALLF  236
            ++    +P++ + GAL       R+A+ D   L  LL  I ++ GQP T+ A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  237  PRPGELRAAGWDEFDFESSVWSIPEGR------------MKMRRPHRVPLSRQAVGVLTS  284
             R++ELR A W E+D+++++W+IP  R             KMR PH VPLS+Q V++L+ 
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  285  LRRISGGGSLLFPSVRSGLRPISDNTLNAALRRMGYG-KEEATAHGFRATASTLLNECGK  343
            L+  +G  +L+F + +   +PIS+NT+N ALR MGY+  ++  +HGFRA A + L E G 
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  344  WHPDAIERQLAHVENNDVRRAYA-RAEHWEERVKMMQWWADYLEE  387
            W  DA+ERQ++H E N+VR AY  +AEH EER  M+QWWAD+L+ 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

477) Mesci_2349 in NC_014923


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  243 bits (908),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 255/405 (63%), Gaps = 22/405 (5%)

Query  1    MALSDVKCRNARPVSKLVKLTDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLIS  60
            MAL+D K R A+P  K  KLTDG+G+ L V+P GSR WRL YR+ GK+K LALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEAREARDTAKRLLLRGIDPALERKLQKASAE--DTFRSIAEDYVDKLKK--EGRADRT  116
            L+EAR  RD A++L+  G+DP  +++ +K  ++   +F  IA       K+  ++++D+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  117  ITKVKWLLDFAYPAFGDKCVREIDPVTILAALRSVEDRGRYESARRLRSTIGSVFRYAIA  176
            +   K L    +P +G++ +  ++   +L ++R+ E +  YE A RL+  I++V RYA+ 
Sbjct  121  L---KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  177  TARADLDPTVALRGALVGPTVTPRAAVTDPMALGGLLRAINAFDGQPTTRAALKLMALLF  236
            ++    +P++ + GAL       R+A+ D   L  LL  I ++ GQP T+ A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  237  PRPGELRAAGWDEFDFESSVWSIPEGR------------MKMRRPHRVPLSRQAVGVLTS  284
             R++ELR A W E+D+++++W+IP  R             KMR PH VPLS+Q V++L+ 
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  285  LRRISGGGSLLFPSVRSGLRPISDNTLNAALRRMGYG-KEEATAHGFRATASTLLNECGK  343
            L+  +G  +L+F + +   +PIS+NT+N ALR MGY+  ++  +HGFRA A + L E G 
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  344  WHPDAIERQLAHVENNDVRRAYA-RAEHWEERVKMMQWWADYLEE  387
            W  DA+ERQ++H E N+VR AY  +AEH EER  M+QWWAD+L+ 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

478) Mesop_2493 in NC_015675


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  243 bits (908),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 255/405 (63%), Gaps = 22/405 (5%)

Query  1    MALSDVKCRNARPVSKLVKLTDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLIS  60
            MAL+D K R A+P  K  KLTDG+G+ L V+P GSR WRL YR+ GK+K LALG YP +S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAEAREARDTAKRLLLRGIDPALERKLQKASAE--DTFRSIAEDYVDKLKK--EGRADRT  116
            L+EAR  RD A++L+  G+DP  +++ +K  ++   +F  IA       K+  ++++D+ 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV  120

Query  117  ITKVKWLLDFAYPAFGDKCVREIDPVTILAALRSVEDRGRYESARRLRSTIGSVFRYAIA  176
            +   K L    +P +G++ +  ++   +L ++R+ E +  YE A RL+  I++V RYA+ 
Sbjct  121  L---KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  177  TARADLDPTVALRGALVGPTVTPRAAVTDPMALGGLLRAINAFDGQPTTRAALKLMALLF  236
            ++    +P++ + GAL       R+A+ D   L  LL  I ++ GQP T+ A+ L  L+F
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  237  PRPGELRAAGWDEFDFESSVWSIPEGR------------MKMRRPHRVPLSRQAVGVLTS  284
             R++ELR A W E+D+++++W+IP  R             KMR PH VPLS+Q V++L+ 
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  285  LRRISGGGSLLFPSVRSGLRPISDNTLNAALRRMGYG-KEEATAHGFRATASTLLNECGK  343
            L+  +G  +L+F + +   +PIS+NT+N ALR MGY+  ++  +HGFRA A + L E G 
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  344  WHPDAIERQLAHVENNDVRRAYA-RAEHWEERVKMMQWWADYLEE  387
            W  DA+ERQ++H E N+VR AY  +AEH EER  M+QWWAD+L+ 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

479) Rpic_2072 in NC_010682


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  241 bits (901),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 164/404 (41%), Positives = 264/404 (66%), Gaps = 19/404 (4%)

Query  1    MALTDTAVRNARPAEKPIKLFDGGGLFLHITPGGQRYWRLKYRFAGKEKLLALGVYPEVG  60
            MALTD+ +R A+P++K+ KL DG+G+FL + P G RYWRL+YR+ GKEK LALGVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHTKYAPGWSKSNA  120
            L EAR +R+EA++L++EGVDP  +++ +KV  V     SFE +AR WH+     W++S++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKV--VPDLQLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  DKVIARLQNDVFPWLGGRPIAELKAPDLLAVCRRVESRGALDTAHRVLQTCGQIFRYAVA  180
            DKV+  L+ +VFP +G R I+ L++PDLL   R  E++   + A R+ Q  + + RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPKEVAGLLRVFDGFTGTFVVKCALLLAPMLF  240
            +G    +P+ D+ GAL   K ++  ++ D   ++ LL  ++++ G  V + A++L  ++F
Sbjct  178  SGIIRYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRAAEWADIDLDAGEW------------RFV--SSKRDVAHIVPLSTQAVAILRD  286
            +R++ELR A W++ID+D + W            +F   +SK   +H+VPLS Q VAIL +
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  287  LHALTGHGHYVFPGARDKKKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLG  346
            L++ +G+   +F GA+D +KP+SE ++N AL+ MG DT ++  GHG R++A + L E   
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  FEAEVIELQLAHRKKDPNGAAY-DRVAFLAVRKQMMQAWADYLD  389
               + +E Q++H+ ++   AAY ++   L  R+ M+Q WAD+LD
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

480) Bcep1808_2451 in NC_009256


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  241 bits (898),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 183/408 (45%), Positives = 274/408 (68%), Gaps = 25/408 (6%)

Query  1    MALTDLKVRTAKPADKQQKLYDGAGLLLLITPAGGKRWIFKYRIDGKEKSLALGTYPDVS  60
            MALTD K+R+AKP+DK  KL DGAG++LL+ P G++ W ++YRI GKEK+LALG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaeararrdsareKLAAGVDPSEakkadkraaqlaaaSSFEIVAREWFETQRGGWSEVYA  120
            L+EAR++RD AR  ++ GVDP E K+A K  ++L    SFE +AR W  +++  W++  +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  GKVINCLEVDVFPRLGARPIANIDAPELLAIIRAVESRGVRETAKRVLQRSRAVFQYGIM  180
            +KV++ LE +VFP +G R I+ +++P+LL  +RA E++ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCSRNPAADIDAE-TVLKKSTGVQHMARVKVTEIPQLMRDIDEYSGDLVTRLALRFMA  239
            +G    NPA D+ +  T +K+    QH + + ++ +P+L+  I+ Y G+ VT+LA+ +  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTKEMIQAEWHEIDVGAAEWRVPAER------------MKMRDPHIVPLSRQALDV  287
            L F+R+ E+  A W EID++ A W +PAER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLREINGQRRFVFYSVQG-RSHISNNTMLYALYRMGYKSR--MTGHGFRGLAATTLRE  344
            LA+L+   G+  ++F + ++ R  IS+NT+  AL  MGY +   + GHGFR++A ++L E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LG-YSRDVVERQMAHAERNQVTAAYVH-AEYLPERRKMMQHWADHLDE  390
             G  SRD VERQM+H ERN V AAY+H AE L ERR M+Q WAD LD 
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

481) RSc1871 in NC_003295


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  240 bits (895),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 167/405 (42%), Positives = 262/405 (65%), Gaps = 19/405 (4%)

Query  1    MALTDTAIRNAKPADKPIKLFDGGGLFLHVTPAGQRYWRLKYRFAGKEKLLAIGVYPEIG  60
            MALTD+ IR AKP+DK+ KL DG+G+FL V P G RYWRL+YR+ GKEK LA+GVYPE++
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNA  120
            L EAR +R+EA++L++EGVDP  +++ +KV  V     SFE +AR WHA     W++S++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKV--VPDLQLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  KKVLARLENDVFPWLGGRPIAEVKAPELLGVARRVESRGALDTAHRVLQTCGQIFRYAVA  180
             KVL  LE +VFP +G R I+ +++P+LL   R  E++   + A R+ Q  + + RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPKEVAGLLRMFDGFTGTFIVKCALLLAPMVF  240
            +G    +P+ D+ GAL   K ++  ++ D   ++ LL  ++++ G  + + A++L  +VF
Sbjct  178  SGIIRYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRAAEWADIDLDAAEW------------RFV--SSKRDVAHIVPLSTQAVAILRD  286
            +R++ELR A W++ID+D A W            +F   +SK   +H+VPLS Q VAIL +
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  287  LHALTGHGRYLFPGARDKAKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLG  346
            L++ +G+   +F GA+D  KP+SE ++N AL+ MG DT ++  GHG R++A + L E   
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  FEAEVIELQLAHRKKDPNGAAY-DRVAFLAVRKQMMQAWADYLDE  390
               + +E Q++H+ ++   AAY ++   L  R+ M+Q WAD+LD 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

482) Bamb_2400 in NC_008390


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  239 bits (891),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 182/411 (45%), Positives = 277/411 (68%), Gaps = 25/411 (6%)

Query  1    MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVS  60
            MALTD K+R+AKP++K  KL DG+G++LL+ P G++ W L+YR+ +KEK+LALG YP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaeararrdnareKLAAGVDPSEakkadkraaqlaaaSSFEIVAREWFDTQRGGWSEVYA  120
            L+EAR++RD+AR  ++ GVDP E K+A K  ++L    SFE +AR W  +++  W++  +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  GKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVFQYGIM  180
            +KV+  LE +VFP +G R I+++++P+LL  +R+ E++ + E A R+ QR  AV +Y++ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCARNPAADIDAE-TVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMA  239
            +G    NPA D+ +  T +K+    QH + +  + +P L+  I+ Y G+ VT+LA+ +  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTKEMIQAEWPEIDVDAAEWRVPAER------------MKMRDPHIVPLSRQALGV  287
            L F+R+ E+  A W+EID+D A W +PAER             KMR PH+VPLS+Q +++
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LAQLREINGQQRFVFYSVQG-RSHISNNTMLYALYRMGYKSR--MTGHGFRGLAATALRE  344
            LA+L+   G++ ++F + ++ R  IS+NT+  AL  MGY +   + GHGFR++A +AL E
Sbjct  294  LAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  345  LG-YSRDVVERQMAHAERNQVTAAYVH-AEYLPERREMMQHWADRLDELRA  393
             G  SRD VERQM+H ERN V AAY+H AE L ERR M+Q WAD LD  R 
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

483) Nmul_A2184 in NC_007614


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  239 bits (892),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 169/405 (42%), Positives = 266/405 (66%), Gaps = 22/405 (5%)

Query  1    MALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVS  60
            MALTD+ IR +K++DK+ KLTD  G++LL+ PNGSR WR+ YR  GK KTL++GVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKDARNRRDEARKLLASDVDPGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHG  120
            L +AR +RDEARKL++ +VDP E+++A K   +     SFE I+R W A  +  W +SH+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKV--VPDLQLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  eriirrferdifPWIGSKPISEIAAPELLATVRRIESRGAVETAHRALGNCGQVFRYAIA  180
            +++++ +E ++FP IG++ I+ + +P+LL  VR  E++   E A R     + V RYA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF  240
            ++    + + D+ GAL  VK +H +A+ +  ++  LL  I++Y G  V + A+ L  LVF
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRKAEWKDIDLDGGEW------------RYT--VTKTNTPHIVPLSTQAVEILKE  286
            +R++ELR A W +ID+D + W            +++   +K  TPH+VPLS Q V IL E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  287  LQALTGRSRFVFPGARTNGRPMSDNAILAALRRMGID-KEEMSGHGFRAMARTILDEVLG  345
            LQ+ +G + ++F GA+   +P+S+N++  ALR MG D  +++ GHGFRAMA + L E  G
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIES-G  355

Query  346  VRP-DFIEHQLAHSVRDPNGRAY-NRTAHLPERRKMMQQWADYLD  388
            +++ D +E+Q++H  R+    AY +++ HL ERR M+Q WAD+LD
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

484) RCFBP_11461 in NC_014307


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  239 bits (892),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 166/408 (41%), Positives = 263/408 (65%), Gaps = 19/408 (4%)

Query  1    MALTDTAIRNAKAADKPIKLFDGGGLFLHITPAGQRYWRLKYRFAGKEKLLAIGVYPEVG  60
            MALTD+ IR AK++DK+ KL DG+G+FL + P G RYWRL+YR+ GKEK LA+GVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNA  120
            L EAR +R+EA++L++EGVDP  +++ +KV  V     SFE +AR WHA     W++S++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKV--VPDLQLSFEHIARRWHAS-NKQWAQSHS  117

Query  121  KKVLARLENDVFPWLGGRPIAELKAPELLGVARRVESRGALDTAHRVLQTCGQIFRYAVA  180
             KVL  LE +VFP +G R I+ L++P+LL   R  E++   + A R+ Q  + + RYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPREVAGLLRMFDGFTGTFVVKCALLLAPMLF  240
            +G    +P+ D+ GAL   K ++  ++ D   ++ LL  ++++ G  V + A++L  ++F
Sbjct  178  SGIIRYNPALDMAGALTTVK-RQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRPGELRAAEWADIDLDAGEW------------RFV--SSKRDVAHIVPLSTQAVAILRD  286
            +R++ELR A W++ID+D + W            +F   +SK   +H+VPLS Q VAIL +
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  287  LHALTGHGRYLFPGARDKSKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLG  346
            L++ +G+   +F GA+D  KP+SE ++N AL+ MG DT ++  GHG R++A + L E   
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  FEAEVIELQLAHRKKDPNGAAY-DRVAFLAVRKQMMQAWADYLDEIKA  393
               + +E Q++H+ ++   AAY ++   L  R+ M+Q WAD+LD  + 
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

485) Mpe_A1087 in NC_008825


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  238 bits (887),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 173/421 (42%), Positives = 268/421 (64%), Gaps = 24/421 (5%)

Query  1    MKLTDLKLRTLTQSGKHF---DGGGLYLEVTAAGGRYWRMKYRHGGKEKRLAFGVYPEVT  57
            M LTD K+R+   ++K +   DG+G++L V + G+RYWR++YR  GKEK LA+GVYPEV+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  58   LraardrrdearrVLDQGGDPGELRKaakaqaaheaSNTFEAVARDWLTHQADSWEAVTL  117
            L  AR +RDEAR+++ +G DP E ++A K  +  + S  FE +AR W + + + W     
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLS--FEHIARRWHASNKQ-WAQSHS  117

Query  118  ARIKAAFKADVFPQLGARPMAQIKPREVATVVKAIEARGAGDMAARVLQRIRAVFRFAVV  177
             ++  ++ ++VFP +G R ++ ++  ++   V+A EA+   ++A+R+ QRI AV R+AV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  178  HERIDSNPMLDLQPGELLKPRQVRHRAALADRDLPVFLEKLAAYDGDVSTSAALRLLMLT  237
               I  NP LD+ +G L   ++ +HR+AL    LP +L ++++Y G+  T  A+ L +L 
Sbjct  178  SGIIRYNPALDM-AGALTTVKR-QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  238  AVRPGELRGARWDEIDMDAAEWRIPAER------------MKMRSPHVVPLSRQALDVLQ  285
             +R++ELR ARW EID+D A W IPAER             KMR+PH+VPLS+Q + +L 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  286  LMQPLSGERELVFPSPYYPGKPLSENTLNSALARMGYKGL--ATAHGFRALFSTVANESG  343
             +Q  +GE  L+F ++  P KP+SENT+N AL  MGY       +HGFRA+  +   ESG
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  344  H-SPDVIERQLAHVERNAVRAAY-HRSTYLKDRAQLMQWWADYLDGRRSGKVVPLSSARV  401
              S D +ERQ++H ERN+VRAAY H++  L +R  ++QWWAD+LD+ R   + P+  A++
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKI  415

Query  402  A  402
             
Sbjct  416  N  416

486) M301_2114 in NC_014207


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  237 bits (883),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 162/403 (41%), Positives = 260/403 (65%), Gaps = 25/403 (6%)

Query  13   KDKDGKIKVAPYKVTDEKALYLLVQANGSRLWRLDYRFDGLRKTFAIGSYPDVSLAQARE  72
            K + +K    +YK+TD  +++LLV++NGSR WRL YR+ G  KT+A+G YP+VSL++AR 
Sbjct  7    KIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEART  66

Query  73   QRDSARKLLSNDPPIDPNENRKAIKATKKLGAENSFEVVAREWWLSHMKGK--ADSHKEK  130
            +RD ARKL+S++  +DP E+++A K    L  + SFE +AR W   H   K  A+SH +K
Sbjct  67   KRDEARKLISEG--VDPCEQKRAKKVVPDL--QLSFEHIARRW---HASNKQWAQSHSDK  119

Query  131  VIRRFELYLFPWIGRKPIAEITAPQVLEAIKRIEKLNILETAHRTLQTAGQVFRYAVQTG  190
            V++ +E  +FP IG + I+ + +P++L +++  E  +I E A R  Q  + V RYAVQ+G
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSG  179

Query  191  RAIRDVTADLKGALPATTVKHMASFTEPKDVAELLRAIEGFAGTFTVQCALRLSPLVFAR  250
                + + D+ GAL +   +H +++  ++ ++ELL  I ++ G    Q A+ L+ LVF R
Sbjct  180  IIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVFIR  238

Query  251  PSELRMAKWSDIDLDTGIWQYLV--------------SKTKTDHLVPLSTQAVAILRELH  296
            +SELR A+WS+ID+D ++W                  SK +T HLVPLS Q VAIL EL+
Sbjct  239  SSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQ  298

Query  297  PLSGHGKYVFMGGHSPLKPMSESAVNAALKRMGYDTQKDITAHGFRAMARTILHERLNID  356
              +G+   +F G+H P KP+SE++VN AL+ MGYDT +D+ +HGFRAMA + L E     
Sbjct  299  TWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWS  358

Query  357  PHIIEHQLAHRVPDNLGGAY-NRTRFIDQRKVMMQQWADYLDE  398
             + +E+Q++H+  + + +AY +++  +++R++M+Q WAD+LD 
Sbjct  359  RDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

487) Tbd_2005 in NC_007404


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 172/405 (43%), Positives = 262/405 (65%), Gaps = 22/405 (5%)

Query  17   VALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYRFLGKRKTLALGVYSDVS  75
            +ALTD+ ++ AKP DK+YK++D  G++LLV+  G +YWR+ YR+LGK KTLALGVY++VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  76   LararqkrddaraMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQST  135
            L+ AR KRD+AR ++++G DP EQ++  K   +     SFE +AR WHA +  ++W+QS 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASN--KQWAQSH  116

Query  136  ADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGV  195
            +DK +  LE+ VFP +G+  I+++++++LL  +R  E + I   A RL++  + + RY+V
Sbjct  117  SDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAV  176

Query  196  ATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALL  255
             +G    NPA ++ GAL     +HRPA+   R +  +L  +    G ++VT+ A  + LL
Sbjct  177  QSGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKG-QPVTQLAVMLNLL  234

Query  256  TFVRAQEFRYAKWEEIDWQAKEWKVPAKR---------MKTGKALPAHTVPLSQQALALL  306
             F+R+ E+RYA+W EID +   W +PA R          + +K   +H VPLS+Q +A+L
Sbjct  235  VFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAIL  294

Query  307  TELKNLTGHSPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQ--CVHGFRASARSILS  364
            +EL+  +G++  +F    + +    ISENTV K L  MGY+  Q  C HGFRA A S L 
Sbjct  295  AELQTWAGENGLIFT--GAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  365  EQG-WSREAMERQLDHKETDSTVAAYA-RSEHLPERRNMMQAWAD  407
            E G WSR+A+ERQ+ H+E ++  AAY  ++EHL ERR M+Q WAD
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWAD  397

488) RD1_2228 in NC_008209


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  236 bits (879),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 168/412 (41%), Positives = 263/412 (64%), Gaps = 28/412 (6%)

Query  15   MPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVS  74
            M+L+DAKIR  K+ DK YK++D  ++++LV PNGS+ W+++YR+ G+EKTL++G YP VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  75   LQQARKSRDAARSMIANGEDPSeekqeqkrlkreASGQTFEKIGGMFL--DKQRKEGKSK  132
            L +AR  RD AR +I++G DP E+K+ +K +       +FE I+      +KQ+ ++ S 
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ--LSFEHIARRWHASNKQWAQSHSD  118

Query  133  ATLDKTAYHLKLANHDF---GKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVF  189
              L        L  H F   G++ IT++ +P +L  +R  EAK  YE A RL+ RI++V 
Sbjct  119  KVLK------SLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVM  172

Query  190  RYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIalql  249
            RYAV SG+   +P+  + +AL    RQHR+A+ D + +  LL  I+ + GQ  T++A+ L
Sbjct  173  RYAVQSGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVML  231

Query  250  lallaqRPGELRHAKWSEFDEADKVWAIPAGK------------MKMRRDHFVPLADQAI  297
              L+  R++ELR A+WSE+D  + +W+IPA +             KMR  H+VPL+ Q +
Sbjct  232  NLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVV  291

Query  298  TLLNELRPLTGESEYLFPSLRSWHRPMSENTMNAALRRMGY-SGDEMTAHGFRATFSTLA  356
            ++L EL+  +GE+  +F + +  ++P+SENT+N ALR MGY + +++ +HGFRA   +  
Sbjct  292  AILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSAL  351

Query  357  NESGLWNPDAIERALAHEERNEVRRAYA-RGAHWEERVKLSDWWAGRLDDFR  407
             ESGLW+ DA+ER ++H+ERN VR AY  ++ H EER  + +WWA+ LD  R
Sbjct  352  IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

489) Neut_2505 in NC_008344


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (878),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 171/416 (42%), Positives = 265/416 (64%), Gaps = 34/416 (8%)

Query  6    LADVAIRNSKPDDKTQRLSDGAGLYLLIKPNNSKWWRFDYSIDGKRKTLSLGVYPTVSLK  65
            L+D  IR +KP DK+ +L+DGAG++LL+ PN S+ WR+ Y I GK KTL+LGVYP VSL 
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  66   aardradaarqdVVNGIDPSTSRKDHKAKQATEREADRRIAEGLPAID-SFEDVAREWFS  124
             AR + D AR+ + +G+DP   ++  K                +P ++ SFE++AR W +
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKV---------------VPDLQLSFEHIARRWHA  107

Query  125  KFSTEWAPSHADKIIRRLERDIFPWIGKQHITDVNAPALLSVLGRIESRGAKETAHRALQ  184
              + +WA SH+DK+++ LE ++FP IG+++IT +N+P LL  +   E++   E A R  Q
Sbjct  108  S-NKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQ  166

Query  185  NCGQIFRYAVATGRVELNPAPSLRDFLPSPKPAHHAAIIEPQAVGELLRAIDSYQGYFVT  244
              + + RYAV +G +  NPA  + + L + K  H++A ++   + ELL  I+SY+G  VT
Sbjct  167  RISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPA-LDLSRLPELLSRIGSYKGQPVT  225

Query  245  KCALRIAPYVFVRPGELRNAEWVEINLDQAEWDIPAER------------MKMREPHLVP  292
            + A+ +   VF+R++ELR A W EI++D+A W IPAER             KMR PHLVP
Sbjct  226  QLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVP  285

Query  293  LATQVVEILRELYALTGSGRFVFPGARTTSRPMSNNAVLAALRRMGFG-KDEMTGHGFRA  351
            L+ QVV IL EL + +G   ++F GA+   +P+S+N+V  ALR MG++  +++ GHGFRA
Sbjct  286  LSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRA  345

Query  352  MA-RTILDQELHVRPDFIEHQLAHAVRDANGRAY-NRTTHLPERKQMMQDWADYLD  405
            MA  ++++  L  R D +E+Q++H  R++   AY +++ HL ER+ M+Q WAD+LD
Sbjct  346  MACSALIESGLWSR-DAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

490) AvCA6_40500 in NC_021150


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (877),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 164/404 (41%), Positives = 264/404 (66%), Gaps = 19/404 (4%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D+ IR+AKP +K Y+L+D+ G+ L V P GS+ WR RYR+ G+ K LALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSDGLTFETLAREWHAYRAPRWAKSTAD  120
            L  AR  RD AR+L++EG DP  +++A +   + + L+FE +AR WHA    +WA+S +D
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHA-SNKQWAQSHSD  118

Query  121  KTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLAK  180
            K    LE++++P +G+R + ++  P+L+  +++ E +   ++A + +Q++S + R+++  
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTGV  240
            G +  NPA D+   A  +   +H+P + ++ LPELL++I +   + +T+ A+ L +L  +
Sbjct  179  GIIRYNPALDMA-GALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRAAPWSEFDLKAAVWTIPKER------------MKARRPHIVPLPRQAMAILREL  288
            R++ELR A WSE+D+  A+WTIP ER             K R PH+VPL++Q +AIL EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGAYELVFAGRNNSARPMSENTVNKALADAGYRGRQT--GHGFRHLLSTELNSRGY-  345
            Q  +G   L+F+G +++ +P+SENTVNKAL   GY   Q   GHGFR +  + L   G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  346  NRDWIERQLAHGDQDEMRDTYNH-ATYLEQRRDMMQAWADSIDA  388
            +RD +ERQ++H +++ +R +Y H A  LE+RR M+Q WAD +DA
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

491) AvCA_40500 in NC_021149


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (877),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 164/404 (41%), Positives = 264/404 (66%), Gaps = 19/404 (4%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D+ IR+AKP +K Y+L+D+ G+ L V P GS+ WR RYR+ G+ K LALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSDGLTFETLAREWHAYRAPRWAKSTAD  120
            L  AR  RD AR+L++EG DP  +++A +   + + L+FE +AR WHA    +WA+S +D
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHA-SNKQWAQSHSD  118

Query  121  KTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLAK  180
            K    LE++++P +G+R + ++  P+L+  +++ E +   ++A + +Q++S + R+++  
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTGV  240
            G +  NPA D+   A  +   +H+P + ++ LPELL++I +   + +T+ A+ L +L  +
Sbjct  179  GIIRYNPALDMA-GALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRAAPWSEFDLKAAVWTIPKER------------MKARRPHIVPLPRQAMAILREL  288
            R++ELR A WSE+D+  A+WTIP ER             K R PH+VPL++Q +AIL EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGAYELVFAGRNNSARPMSENTVNKALADAGYRGRQT--GHGFRHLLSTELNSRGY-  345
            Q  +G   L+F+G +++ +P+SENTVNKAL   GY   Q   GHGFR +  + L   G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  346  NRDWIERQLAHGDQDEMRDTYNH-ATYLEQRRDMMQAWADSIDA  388
            +RD +ERQ++H +++ +R +Y H A  LE+RR M+Q WAD +DA
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

492) Avin_40500 in NC_012560


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (877),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 164/404 (41%), Positives = 264/404 (66%), Gaps = 19/404 (4%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D+ IR+AKP +K Y+L+D+ G+ L V P GS+ WR RYR+ G+ K LALGVYP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSDGLTFETLAREWHAYRAPRWAKSTAD  120
            L  AR  RD AR+L++EG DP  +++A +   + + L+FE +AR WHA    +WA+S +D
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQ-LSFEHIARRWHA-SNKQWAQSHSD  118

Query  121  KTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLAK  180
            K    LE++++P +G+R + ++  P+L+  +++ E +   ++A + +Q++S + R+++  
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTGV  240
            G +  NPA D+   A  +   +H+P + ++ LPELL++I +   + +T+ A+ L +L  +
Sbjct  179  GIIRYNPALDMA-GALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRAAPWSEFDLKAAVWTIPKER------------MKARRPHIVPLPRQAMAILREL  288
            R++ELR A WSE+D+  A+WTIP ER             K R PH+VPL++Q +AIL EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  QEITGAYELVFAGRNNSARPMSENTVNKALADAGYRGRQT--GHGFRHLLSTELNSRGY-  345
            Q  +G   L+F+G +++ +P+SENTVNKAL   GY   Q   GHGFR +  + L   G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  346  NRDWIERQLAHGDQDEMRDTYNH-ATYLEQRRDMMQAWADSIDA  388
            +RD +ERQ++H +++ +R +Y H A  LE+RR M+Q WAD +DA
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

493) Nit79A3_1833 in NC_015731


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (876),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 164/409 (41%), Positives = 268/409 (66%), Gaps = 21/409 (5%)

Query  1    MKLTDpeikaakpkekpYSLPDGHGLVLLVQPSGAKWWRYRYRFNGTAKMLSMGVYPDVT  60
            M LTD+ I+AAKP +K+Y L DG G+ LLV+P+G++ WR RYR+ G  K L++GVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKEARNQQARFKELLAQSIDPSLHRQEQKQQQAIATENSFESIARLWWNQWSAARNQRHA  120
            L EAR ++   + L+++++DP  +++ +K    +  + SFE IAR +W+  +  + Q H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIAR-RWHASNKQWAQSHS  117

Query  121  DYVIRRLEADIFPVIGRKPVTELSAPMLLMAIKKIEARGALDIAKRALTTCNQIMRYAVA  180
            D V++ LE+++FP IG + +T L++P LL++++  EA+   +IA R     + +MRYAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  HGLAERNPAADIKPSDVLKPTTKTNYARLDQKELPELLRKIDAYDGQPLTKLALQLMALT  240
             G+   NPA D+  ++ L    + + + LD   LPELL +I++Y GQP+T+LA+ L  L 
Sbjct  178  SGIIRYNPALDM--AGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  241  FVRTSELIGAKWDEIELDNKQWRIPAE------------CMKMKTPHIVPLSNQAIAVLG  288
            F+R+SEL  A+W EI++DN  W IPAE              KM+TPH+VPLS+Q +A+L+
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  289  KIKELAADQILLFPSERRDGNSMSNNTILYALYRLGYHSR--MTGHGFRGIASTILHERG  346
             ++  A+++ L+F + +   +++S+NT+  AL  +GY++   + GHGFR++A + L E G
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESG  355

Query  347  Y-SHEHIELQLAHAKRDQVSASYNH-ALYLEPRARMMQDWADYLEAIRA  393
              S++ +E Q++H  R+ V A+Y H A  LE R  M+Q WAD+L+A R 
Sbjct  356  LWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

494) Varpa_2722 in NC_014931


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  235 bits (875),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 166/412 (41%), Positives = 252/412 (62%), Gaps = 27/412 (6%)

Query  1    MALTDMAARKAKPEVRSYNLTDGAGLYLQVTPAGGKLWRWNYRHDGKQKTMAFGSYPEVS  60
            MALTD   R AKP  ++Y+LTDGAG++L V P G++ WR  YR  GK+KT+A+G YPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   IADAREAHQAARKQKAAGADPMAQRKLDKIAGVMAREHSFKAIAQQWHD---QWKPNKAE  117
            +++AR  ++ ARK  + G DP  Q++  K+   +  + SF  IA++WH    QW  + ++
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDL--QLSFEHIARRWHASNKQWAQSHSD  118

Query  118  RHARIVWGRLENDVFPAIGARPISEVKPSELVAMIKKIAGRGAPDMAKRCLEISGQVFRY  177
            +  +     LE +VFP IG R I+ ++ ++L+  ++   ++   ++A R  +  + V RY
Sbjct  119  KVLK----SLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRY  174

Query  178  AVAHGISERNPAADIKPGDVLPPRKTNHFARVESSELPDLLRKIEAYSGTPATRLAMKLM  237
            AV  GI   NPA D+  ++ L   K +H + ++ S LP+LL +I +Y G P T+LA+ L 
Sbjct  175  AVQSGIIRYNPALDM--AGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLN  232

Query  238  AYTFVRTGELIGARWPEFDLDAAVWRIPPER------------MKMKTLHIVPLSTQAVE  285
               F+R++EL  ARW+E+D+D A+W IP+ER             KM+T H+VPLS Q V 
Sbjct  233  LLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVA  292

Query  286  VLRTLQLVTGDSALLFPGERDHEKSISNNTILGALKRMGYAGR--MTGHGFRGVASTELH  343
            +L  LQ  +G+++L+F G +D  K+IS+NT+  AL+ MGY     + GHGFR++A + L 
Sbjct  293  ILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  344  EMGF-EEAHIEAQMSHLKRNRVASAYDH-SKYLKQRVAMMQTWADRLDQFRA  393
            E G+     +E QMSH  RN V +AY H +  L +R  M+Q WAD LD  R 
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

495) DVU1527 in NC_002937


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  234 bits (871),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 257/407 (64%), Gaps = 21/407 (5%)

Query  2    LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPNVGLK  61
            LTD K RAAKP++K Y+L DG+GM+L V P+G++ WRL+YR+ GKEK L+LGVYP+V+L 
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   EAREKRDELRRLIAEGIDPAAQRCPQKVAPTAD-SFEMVAREWMDLRSPAWAPRHLSTTC  120
            EAR KRDE R+LI+EG+DP  Q+ ++KV P  + SFE +AR W +  +  WA  H     
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRW-HASNKQWAQSHSDKVL  121

Query  121  QRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVASARI  180
            + LE+ +FP IG   I  +   D+L ++R  E +   E A +     S V RYAV S+ I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  181  QSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTFVRPG  240
            + +P  D+ GAL T +  H  + +D   +  L+  I++Y G  V + A+ +  L F+R++
Sbjct  182  RYNPALDMAGALTTVKRQH-RPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRAAEWNEFDMERRIWTIPAHK------------MKKRREHIVPLSTQALAVLRDVRAT  288
            ELR A W+E+D++  +WTIPA++             K R  H+VPLS Q +A+L ++++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  289  APRLNSPMVFQSVRLRSDRGLSENTLLVALRSLGYGQG-TMTAHGFRAMASSLLNGLG-Y  346
            A   ++ ++F + +  + + +SENT+  ALR +GY+    + +HGFRAMA S L   G  
Sbjct  301  AG--ENGLIFTGAH-DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  347  NPDVIERQLAHIEGNKIRAAY-HRTEYLEERTAMMQAYADYLDSLRD  392
            + D +ERQ++H E N +RAAY H++E LEER  M+Q  AD+LD+ R+
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

496) Deval_1767 in NC_017310


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  234 bits (871),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 257/407 (64%), Gaps = 21/407 (5%)

Query  2    LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPNVGLK  61
            LTD K RAAKP++K Y+L DG+GM+L V P+G++ WRL+YR+ GKEK L+LGVYP+V+L 
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   EAREKRDELRRLIAEGIDPAAQRCPQKVAPTAD-SFEMVAREWMDLRSPAWAPRHLSTTC  120
            EAR KRDE R+LI+EG+DP  Q+ ++KV P  + SFE +AR W +  +  WA  H     
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRW-HASNKQWAQSHSDKVL  121

Query  121  QRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVASARI  180
            + LE+ +FP IG   I  +   D+L ++R  E +   E A +     S V RYAV S+ I
Sbjct  122  KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII  181

Query  181  QSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTFVRPG  240
            + +P  D+ GAL T +  H  + +D   +  L+  I++Y G  V + A+ +  L F+R++
Sbjct  182  RYNPALDMAGALTTVKRQH-RPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS  240

Query  241  ELRAAEWNEFDMERRIWTIPAHK------------MKKRREHIVPLSTQALAVLRDVRAT  288
            ELR A W+E+D++  +WTIPA++             K R  H+VPLS Q +A+L ++++ 
Sbjct  241  ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW  300

Query  289  APRLNSPMVFQSVRLRSDRGLSENTLLVALRSLGYGQG-TMTAHGFRAMASSLLNGLG-Y  346
            A   ++ ++F + +  + + +SENT+  ALR +GY+    + +HGFRAMA S L   G  
Sbjct  301  AG--ENGLIFTGAH-DPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  347  NPDVIERQLAHIEGNKIRAAY-HRTEYLEERTAMMQAYADYLDSLRD  392
            + D +ERQ++H E N +RAAY H++E LEER  M+Q  AD+LD+ R+
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

497) XCV2217 in NC_007508


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 181/411 (45%), Positives = 270/411 (66%), Gaps = 24/411 (5%)

Query  1    MPLTDTAIRKTKPGAVPLKLRDGGGLYLLMRPDGARWWRWDYRRPVTGKRNTLSLGTYPD  60
            M+LTD+ IR +KP   + KL DG+G++LL++P+G+R WR  YR  + GK +TL+LG YP+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPE  58

Query  61   TGladarekrdaarkllaaGVDPGEQRKQAKQERAALVDAAGETFEVVAREWMARQTV-A  119
             +L++AR KRD ARKL++ GVDP EQ++  K     +V     +FE +AR W A +   A
Sbjct  59   VSLSEARTKRDEARKLISEGVDPCEQKRAKK-----VVPDLQLSFEHIARRWHASNKQWA  113

Query  120  RVTAEKNRWLLETFLFPEIGSRPIGEITPRELLDALRKIEATGKLETAARAKIKAGQVFR  179
            +  ++K    LET +FP IG+R I  +   +LL ++R  EA    E A+R + + + V R
Sbjct  114  QSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMR  173

Query  180  YAMLEGKAEIDPTaslrgalkaakarhhaaVTEPAKIGQLLRAIEGFSGQPVTHAALKLA  239
            YA+  G    +P+  + GAL + K +H++A+ + +++ +LL  I ++ GQPVT+ A+ L 
Sbjct  174  YAVQSGIIRYNPALDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLN  232

Query  240  PLVFVRPGELRAAEWAEIDLDAAMWRIRPER------------MKMKAAHLVPLSSQAVA  287
             LVF+R++ELR A W+EID+D AMW I +ER             KM+++HLVPLS Q VA
Sbjct  233  LLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVA  292

Query  288  ILRDLHALTGGGHHVFPGLR-PNRPMSENTVNAALRALGY-SGDEMTGHGFRSMAATRLN  345
            IL +L++ +G    +F G + P +P+SENTVN ALR +GY + +++ GHGFR+MA + L 
Sbjct  293  ILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  346  ELG-WNADAVERQLAHAETNKVREAYTHAAQYLHERVRMMQAWADYLDGLR  395
            E G W+ DAVERQ++H E N VR AY H A+ L+ER  M+Q WAD+LD+ R
Sbjct  353  ESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

498) PAU_01009 in NC_012962


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 271/411 (66%), Gaps = 32/411 (7%)

Query  1    MKLTARQIDTAKPKDKSYKLSDGGGMYLEIFPNGSKCWRLKYRFAGKEKRLAFGTYPTVT  60
            M LT  +I +AKP DK+YKL+DG+GM+L + PNGS+ WRL+YR+ GKEK LA+G YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LaearkkredakkILANGNDPGLVKRQEKREKALI--INNSFEKIALEWHTYKLPNWSKG  118
            L+EAR KR++A+K++++G DP     ++KR K ++  ++ SFE IA  WH+ +  +W+++
Sbjct  61   LSEARTKRDEARKLISEGVDPC----EQKRAKKVVPDLQLSFEHIARRWHASN-KQWAQS  115

Query  119  YAEDLLEGFTKDIFPFIGKHAITDIKPLDMLTVLRKMEQRGVLDKLKKIRQACNQVFRYA  178
             ++ +L ++  ++FPFIG++ IT ++  D+L  +R  E + + +   +++Q  + V RYA
Sbjct  116  HSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYA  175

Query  179  IVTGRAEYNPTAELAGALATPKAKHFPHLNVDELPAFLQALSFYSGSKITQIAtkllllt  238
            + +G   YNP+ ++AGAL+T K +H P L++  LP +L  ++ Y G  +TQ+A  L LL 
Sbjct  176  VQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLV  235

Query  239  glrtielRASTWTEIDFDKAIWEIPQER------------MKMRRPHIVPLSEQalallk  286
             +R+ ELR + W+EID+D+A+W IP ER             KMR PH+VPLS Q +A+L 
Sbjct  236  FIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILA  295

Query  287  elaaITGRFNFVFHGRNDASKPMSEAAINAINQVLKRIGYDGRAT--GHGFRHTMSTILH  344
            EL + +G   ++F G +D+ KP+SE   N++N+ L+ +GYD      GHGFR    + L 
Sbjct  296  ELQTWAGENGLIFTGAHDPRKPISE---NTVNKALRVMGYDTTQDVCGHGFRAMACSALI  352

Query  345  EQGYNTAW----IETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD  390
            E G    W    +E Q++H ++N++R++Y H A+ L+ RR MLQW AD++D
Sbjct  353  ESGL---WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD  400

499) NCGM2_0360 in NC_017549


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  231 bits (863),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 276/404 (69%), Gaps = 19/404 (4%)

Query  1    MPLTDSAIKTAKPKEKPYKLSDAQGLYLLVNPNGSKLWRLKYRVGGKEKGLAFGAYPTVT  60
            M+LTD+ I++AKP +K+YKL+D+ G++LLV+PNGS+ WRL+YR+ GKEK LA+G YP V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LqqarqrrdearqqlaqGEDPGeqkkaskqakkvseLTFETLAREWYAYNAPRWAESTAY  120
            L +AR +RDEAR+ +++G DP  ++K +K+     +L+FE +AR W A +  +WA+S + 
Sbjct  61   LSEARTKRDEARKLISEGVDPC-EQKRAKKVVPDLQLSFEHIARRWHA-SNKQWAQSHSD  118

Query  121  KAKLYLENDLIPGIGSRPIAAITRPDLVDLVRKVEARGTLNAAGKIRQWLHQIYRYALAK  180
            K    LE +++P IG+R I+++  PDL+  VR  EA+   + A++++Q++  + RYA+  
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  GVVESNPATDLDVVaapakaarhhphlpFAELPELLEKLATAKLHTLTRSAIRLLMLTAV  240
            G++  NPA D+      +   +H+P L ++ LPELL ++++ K + +T+ A+ L +L  +
Sbjct  179  GIIRYNPALDMAGA-LTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRAAPWCEFDLDTATWTIPAAR------------MKARRSHVVPLPRQAVTILRQL  288
            R++ELR A W E+D+D A WTIPA R             K R +H+VPL++Q V+IL +L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  HELTGSYSLLFPGQQNAERPMSENTINKALRLVGYGGRQT--GHGFRHLLSTELNSRGY-  345
            +  +G  +L+F G +++ +P+SENT+NKALR++GY+  Q   GHGFR +  + L   G  
Sbjct  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLW  357

Query  346  NRDWIERQLAHGDKDEIRGTYNH-ATYLEQRRGMMQAWADSIDA  388
            +RD +ERQ++H +++ +R++Y H A  LE+RR M+Q WAD +DA
Sbjct  358  SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

500) NAL212_2545 in NC_015222


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  229 bits (855),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 168/405 (42%), Positives = 266/405 (66%), Gaps = 19/405 (4%)

Query  1    MKLTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYRFADKQKTLALGVYPDVT  60
            M LTD+ I+ AKP  K+Y+++DG+GM++ V PNG++YWR+ YR+ +K+KTLALGVYP+V+
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LADARDRRNEARKLLANGADPGAVkqsqkkqakiaasnsFELIAREFHSLKTPMWSTNHA  120
            L++AR +R+EARKL+++G DP    Q + K+       SFE IAR  H+ +   W+ +H+
Sbjct  61   LSEARTKRDEARKLISEGVDPCE--QKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHS  117

Query  121  ADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEvaarvlqrvravcaYAIA  180
               +K+LE ++FP +GN  I+ +++P +L ++RA E+++  E+A+R+ QR+ AV  YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTF  240
            +G  R NPA ++ GAL+   K +H +AL    LP++L  +++Y   P+T+ A  L +L F
Sbjct  178  SGIIRYNPALDMAGALTT-VKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVF  236

Query  241  VRTGEVRGAKWCEFDLDAKLWKIPAER------------MKSREPHIVPLAKQAIEILGE  288
            +R++E+R A+W E+D+D  +W IPAER             K R PH+VPL+KQ + IL+E
Sbjct  237  IRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAE  296

Query  289  LHPLTGHGEHLFPNRTGNGKVISENTVLKVIERLGYKGR--MTGHGFRTIASTYLNGVGM  346
            L+  +G+   +F    +  K ISENTV K +  +GY     + GHGFR++A + L   G+
Sbjct  297  LQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL  356

Query  347  IRPDVIEAQLAHTEanatraa-ynranyMEYRAAMMQFWADTLDA  390
               D +E Q++H E N+ RAA  ++A+ +E R  M+Q WAD LDA
Sbjct  357  WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

501) Fraau_2605 in NC_017033


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  224 bits (833),  Expect = 8e-60, Method: Compositional matrix adjust.
 Identities = 162/392 (42%), Positives = 252/392 (65%), Gaps = 22/392 (5%)

Query  18   TGKHY---DGGGLHLKVEATGRKYWRYDFRIAGKPDTFAVGVYPKVTLAEARLRHAEASA  74
            T+K Y   DG+G+ L V++ G +YWR  +RI GK  T+A+GVYP V+L+EAR ++ EA  
Sbjct  14   TDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARK  73

Query  75   LVSQGINPkahkrakqaaavvanantfqavaDEWMAQQKPKMAKATYDKAMWMLADLVYP  134
            L+S+G++P  +KRAK+  + +  +    A    W A +K   A++  DK +  L   V+P
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARR--WHASNKQW-AQSHSDKVLKSLETHVFP  130

Query  135  WLGKRPISEIDAPELLAVLRRIEERGANETAHRTKQRCGQIFRYAIATGRAKHDPSGDLR  194
             +G+R I+ +++P+LL  +R  E +   E A R +QR + + RYA+ +G  + +P+ D+ 
Sbjct  131  FIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMA  190

Query  195  GALAPPITKSRAAITDPQKVGELLRAIDGYSGSFSVICALRLAPMLFVRPGELRHAEWAE  254
            GAL+    + R+A+ D  ++ ELL  I++Y G      A+ L  ++F+R++ELR A W+E
Sbjct  191  GALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSE  249

Query  255  FDLDQGLWRIPAEK------------MKMRDEHLVPLPDQALAILRDLLPLTGPDGYLFP  302
            +D+D+++W IPAE+             KMR  HLVPL+ Q +AIL +L   +G +G +F 
Sbjct  250  IDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFT  309

Query  303  GERSASRPMSENTVNAALRRLGYD-KDTMTGHGFRAMASTRLNELG-WSPDVIERQLAHA  360
            G + + +P+SENTVN ALR +GYD  + + GHGFRAMA + L E G WS D +ERQ++H 
Sbjct  310  GAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQ  369

Query  361  ERNKVRAAY-NRAQYLPERQRMMQAWADYLDS  391
            ERN VRAAY ++A+ L ER+ M+Q WAD+LD+
Sbjct  370  ERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401

502) SLG_25940 in NC_015976


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  223 bits (831),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 264/411 (65%), Gaps = 28/411 (6%)

Query  2    LTYIQINAAKPRDKAWNLSDSQGLYLIIQPNGSKLWRFRYRFLDRQKTLHLGGWPQISLA  61
            LT  +I AAKP DKA +L+D+ G++L+++PNGS+ WR+RYR+L+++KTL LG  P++SL+
Sbjct  3    LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS  62

Query  62   DARTRRDDAKKLVANGIDPALEkkrariaakhaaaNTFEAVAQEWLVKCERDGLAPVTIE  121
            +ART+RD+A+KL+++G+DP  +K+  ++ +      +FE +A+ W         A    +
Sbjct  63   EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRW--HASNKQWAQSHSD  118

Query  122  KISWLLDK-AYPMIGNIPIAQITPHEALAVLRKIEATGAYESARRMRSVLSRVFRYGVAT  180
            K+   L+   +P IGN  I+ +   + L  +R  EA   YE A R++  +S V RY+V +
Sbjct  119  KVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQS  178

Query  181  VRCDKDVAADLRGAIAVPKVKHFAAITRPSEVGTLLRAIDGYTGHKVTVMAMRLSPHVLL  240
                 + A D+ GA++  K +H +A+   S +  LL  I++Y G+ VT +A+ L+  V++
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALD-LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RPGELRQAEWTDIDFDEAIWFIPAER------------MKMRRPHRVPLSRQVIEMLKEL  288
            R++ELR A W++ID+D+A+W IPAER             KMR PH VPLS+QV+ +L EL
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  HEHTHWWK----YLFPCLGKPRKAMSENAVNQGLRKLGY-TTDQMTAHGFRAMAATLLNE  343
            +     W      +F     PRK++SEN+VN++LR +GY TT+++ +HGFRAMA + L E
Sbjct  298  QT----WAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIE  353

Query  344  MGEWNPDAIERQLAHVDTNQVRRAYA-RGEYWDERVRMMQYWSDYLDTLRD  393
             G W+ DA+ERQ++H + N VR AY  ++E  +ER  M+Q W+D+LD+ R+
Sbjct  354  SGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE  404

503) XALc_1632 in NC_013722


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  221 bits (824),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 167/381 (44%), Positives = 245/381 (65%), Gaps = 23/381 (6%)

Query  1    MRPDGARWWRWDYRRPNTGKRNTLSLGTYPDTGladardkrdaarkllaaGVDPGEQRKR  60
            ++P+G+R WR  YR    GK +TL+LG YP+ +L++AR KRD ARKL++ GVDP EQ++ 
Sbjct  30   VHPNGSRYWRLRYR--ILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRA  87

Query  61   AKEQAAMVAPAGETFETVARAWMARQTV-ARVTAEKNRWLLETFLFPEIGSRPIGEITPR  119
             K    +V+    +FE +AR W A +   A+  ++K    LET +FP IG+R I  +   
Sbjct  88   KK----VVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTP  143

Query  120  ELLDALRKIEATGKLETAGRAKIKAGQVFRYAMLEGKAEIDPTASLRGALKTVKARHHAA  179
            +LL ++R  EA    E A+R + + + V RYA+  G    +P+  + GAL TVK R+H +
Sbjct  144  DLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVK-RQHRP  202

Query  180  VTDPVKIGQLLRAIEGFIGQPVTHAALKLAPLVFVRPGELRAAEWGEIDLDAAMWRIRPE  239
              D  ++ +LL  I ++ GQPVT+ A+ L  LVF+R++ELR A W+EID+D AMW I +E
Sbjct  203  ALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAE  262

Query  240  R------------MKMKAAHLVPLSSQAVAILRDLHALTGGGPHVFPGLR-PNRPMSENT  286
            R             KM+++HLVPLS Q VAIL +L++ +G    +F G + P +P+SENT
Sbjct  263  REPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENT  322

Query  287  INSALRALGY-SGDEMTGHGFRSMAATRLNEMG-WNADAIERQLAHAETNKVREAYTHAA  344
            +N ALR +GY + +++ GHGFR+MA + L E G W+ DA+ERQ++H E N VR AY H A
Sbjct  323  VNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKA  382

Query  345  QYLPERVRMMQAWADYLDSLR  365
            + L ER  M+Q WAD+LD+ R
Sbjct  383  EHLEERRLMLQWWADFLDANR  403

504) int in NC_020409


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  220 bits (820),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 159/389 (41%), Positives = 241/389 (62%), Gaps = 17/389 (4%)

Query  18   YRVADAEGLCLEVTPTGSKLWRLRYRYNDKGKMMALGKLTDVDLAQARDECRKWKRCLRE  77
            Y+++D+ G+ L V P GS+ WRLRYR  +K K +ALG   +V L++AR      ++ + E
Sbjct  18   YKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISE  77

Query  78   GFDPALVKKEEDARSSGKDSFETVTREWFAKFKQKWAEQTGVRKLARLESHVFPLIGSLP  137
            G DP   K+     +  + SFE ++R W A  KQ WA+  + + L  LE+HVFP+IG+  
Sbjct  78   GVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVLKSLETHVFPFIGNRD  136

Query  138  IDKVDAPQIRRVVLRLESLEKLHTAHRVKNIIGEIMRYAVAMGLILHNPVPDLAGVLPPT  197
            I  +++P++   V   E+ +  + A R+++ I+ +MRYAV  G+I  NP  D+AG L   
Sbjct  137  ITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTV  196

Query  198  KEIHRASIVDPKGIGGLLRAIDEYQGSLVTRCALKLAPITFVRPGELRHAEWSEIDYEGK  257
            K  HR+++ D   +  LL  I+ Y+G  VT+ A+ L  + F+R++ELR A WSEID +  
Sbjct  197  KRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNA  255

Query  258  EWRIPAEK------------MKMKRPHVVPLSRQAVEVLKEVELVTGHGGYIFPSERSSA  305
             W IPAE+             KM+ PH+VPLS+Q V +L E++  +G+ G IF + + + 
Sbjct  256  MWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPR  315

Query  306  RPMSNNTINAALRRMGY-TKDEMTGHGFRSMASTNLNELGF-HPDHIERQLAHVEANRVR  363
            +P+S+NT+N ALR MGY T +++ GHGFR+MA + L E G+   D +ERQ++H E N VR
Sbjct  316  KPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVR  375

Query  364  AAYNY-AEHLVERKKMMQAWADWLDGVKA  391
            AAY   AEHL ER+ M+Q WAD LD+ + 
Sbjct  376  AAYIHKAEHLEERRLMLQWWADFLDANRE  404

505) XBJ1_1315 in NC_013892


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 128/302 (43%), Positives = 204/302 (68%), Gaps = 15/302 (4%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDIS  60
            M LT  ++ +AKP +K+YKL+DG+G++LLV+PNG+RYWRL+YRI GKEK LALGVYP++S
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LSDARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKGYA  120
            LS+ARTKR+EAR+ +S+G DP E+K+A K    + +S  FE IA  WH  ++ +W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLS--FEHIARRWHASNK-QWAQSHS  117

Query  121  EDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            + +L  L  ++FP+IG+R +T ++ +++L  +R  E + + +   + +Q    +  YAV 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRAEFNPVTDLASALKAPKQKHFSHLLADQMNAFLVALAGYSGSEVTQSATRLLMLTGV  240
            +G   +NP  D+A+AL + K++H + L   ++  +L  +++Y G  VTQ A  L +L  +
Sbjct  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  241  RTIELRESEWTEFDFDKDIWQIPAER------------MKMRRPHIVPLSNQVKAILIKL  288
            R+ ELR + W+E+D+D+ +W IPAER             KMR PH+VPLS+QV AIL  L
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  289  HS  290
            ++
Sbjct  298  QT  299

506) LFML04_0012 in NC_018649


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  212 bits (790),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 150/353 (43%), Positives = 228/353 (65%), Gaps = 17/353 (4%)

Query  1    MGVYPETSLrearerrdeakkkieSGIDPSHARKAKKESDSGADTFETIAREWFEKFSPT  60
            +GVYPE SL EAR +RDEA+K I  G+DP + ++AKK       +FE IAR W    +  
Sbjct  53   LGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHAS-NKQ  111

Query  61   WSPSHGDRIIRRLERDIFPWLGKRSIKDIKAPEFLAVLRRIESRGAVETAHRASQNCGQV  120
            W+ SH+D++++ LE ++FP +G+R I  +++P++L  +R  E++   E A R  Q  + V
Sbjct  112  WAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAV  171

Query  121  FRYAAAMGRTEGDPSGDLRGAIPPTTTKHHASITDPKEIGGLLRAIDSYEGGLVVRCALK  180
             RYA   G    +P+ D+ GA+     +H++++  ++ +  LL  I+SY G  V + A+ 
Sbjct  172  MRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVM  230

Query  181  LAPLVFVRPGELRRAEWSEIDFEKMEWRIPAEK------------MKMREQHIVPLSRQA  228
            L  LVF+R++ELR A WSEID+++  W IPAE+             KMR  H+VPLS+Q 
Sbjct  231  LNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQV  290

Query  229  LGILRELQPLTGEGKYLFPSPRSWDRPMSENAVLAALRRMGY-SGDQMTGHGFRSMASTI  287
            ++IL ELQ  +GE   +F +++   +P+SEN+V  ALR MGY + +++ GHGFR+MA + 
Sbjct  291  VAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSA  350

Query  288  LIEQG-WNRDAIERQLAHAERDEIRAAYNY-AQHLPERRKMMQAWANYLDELR  338
            LIE G W+RDA+ERQ++H ER+ +RAAY   A+HL ERR M+Q WA++LD  R
Sbjct  351  LIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANR  403

507) BDL_973 in NC_021884


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  211 bits (785),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 134/302 (45%), Positives = 201/302 (67%), Gaps = 20/302 (6%)

Query  1    MPLTDKAVKNAKAGDKPVKLFDGGGMFLLVTPAGQRYWRLKYRVNGKEKLLALGVYPDVS  60
            M+LTD  ++ AK+ DK+ KL DG+GMFLLV P G RYWRL+YR+ GKEK LALGVYP+VS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LAVARKKRDEAREKLAAGIDPNEAKREVKRTARIAAASSFEAVAREWFDNQRVGWTETYA  120
            L+ AR KRDEAR  ++ G+DP E KR  K  + +    SFE +AR W  +++  W+++ +
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHASNK-QWAQSHS  117

Query  121  EKVIHSLEIDAFPKIGSRPISSIEAPEMLEIIRAIEARGVRETAKRLLQRSRAVFQYAIM  180
            +KV+ SLE + FP IG+R I+++++P++L  +RA EA+ + E A RL QR  AV +YA+ 
Sbjct  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177

Query  181  TGRCTRNPSADIDAE-TILKKGPGVQHMARVKPLEIPQLMRDIAAYPGEPVTRLALELMA  239
            +G    NP+ D+ +  T +K+    QH + +    +P+L+  I++Y G+PVT+LA+ L  
Sbjct  178  SGIIRYNPALDMAGALTTVKR----QHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNL  233

Query  240  LTFVRTKEMIRAQWAEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQSLVV  287
            L F+R+ E+  A+W+E+D   A W +P+ER             KMR PH+VPLS+Q + +
Sbjct  234  LVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAI  293

Query  288  LA  289
            LA
Sbjct  294  LA  295

508) MCA0676 in NC_002977


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  179 bits (664),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 138/305 (46%), Positives = 204/305 (67%), Gaps = 16/305 (5%)

Query  1    MALTDTAVRSARPAEKAFKLADEKGLFLHVMPGGARYWRLKYRIGGKEKLMALGVYPEVS  60
            MALTD+ +R+A+P++KA+KL+D  G+FL V P G+RYWRL+YRI GKEK +ALGVYPEVS
Sbjct  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60

Query  61   LKEararrdkaraLLGQGIDPNDHKKAAKRTEAGEDSFERIALEWHARHMANKSESHATK  120
            L EAR++RD AR L+++G+DP ++K+A K     + SFE+IA  WHA +  + ++SH+ K
Sbjct  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNK-QWAQSHSDK  119

Query  121  TLERLRKDVFPWIGNRPVREITAPELLSVLRRIESRGAIEL-CHVTKRICGQVMRYAIAT  179
             L  L  +VFP IGNR +  + +P+LL  +R  E++   E+  ++ +RI + VMRYA+ +
Sbjct  120  VLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISA-VMRYAVQS  178

Query  180  GRAERDPAADLKGALQPVKARHFAAITDPKAIGELLRAIEEYTGHFATQCALKLSPLVML  239
            G    +PA D+ GAL  VK +H +A+  ++ + ELL  I  Y G+  TQ A+ L+ LV +
Sbjct  179  GIIRYNPALDMAGALTTVKRQHRPALDLSR-LPELLSRIGSYKGQPVTQLAVMLNLLVFI  237

Query  240  RPGEVRQaewaeidieaaewRIPAAK------------MKMRDEHIVPLSRQAVEILESI  287
            R++E+R A W+EIDI+ A W IPA +             KMR  H+VPLS+Q V IL  +
Sbjct  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297

Query  288  RPLTG  292
            +  +G
Sbjct  298  QTWAG  302

509) A1S_2908 in NC_009085


> AF453441|55|G55|18034549|AAL57571.1|Escherichia_coli_83/39|-|58725..59990|int-phe|-|CP4-like 
integrase
Length=421

 Score =  178 bits (660),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 141/350 (41%), Positives = 222/350 (64%), Gaps = 15/350 (4%)

Query  1    MIAEGVDPKEQLSILLAKKNNVNTLENVVRVWLDAYAVRKPLSEDTKNKQLRKFENHLFP  60
            +I+EGVDP EQ        +   ++E++ R W    A  K  ++   +K L+ +E H+FP
Sbjct  74   LISEGVDPCEQKRAKKVVPDLQLSFEHIARRW---HASNKQWAQSHSDKVLKSLETHVFP  130

Query  61   KFKDKAIEQITLRDLKDALNV-----IYDHSPDNAQRIRASLIQVYSYAVQHSYIQTNIA  115
             + ++ I  +   DL  ++       IY+ ++   QRI A +     YAVQ + I+ N A
Sbjct  131  FIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVM----RYAVQSGIIRYNPA  186

Query  116  RDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPltklclllglhtflRSSEIRFA  175
             D+ +   + +++HR+++  L  +P+L+ RI +  G+P+T+L ++L L  F+RSSE+R+A
Sbjct  187  LDMAGALTTVKRQHRPAL-DLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYA  245

Query  176  RWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLSKQSIEILEKVYQYSGDCD  235
            RW+EID++  +W IP+ R  + GVK S+RG+KM+  HLVPLSKQ + IL  +   +G+ +
Sbjct  246  RWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENG  305

Query  236  FVFPSLNNKRIFISENTPNDALRRMGY-TKEEISFHGFRALARSALGEMSIFSRDALEKQ  294
            ++F + ++ R  ISENT N ALR MGY T +++  HGFRA+A SAL E ++ SRDA+E+Q
Sbjct  306  LIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQ  365

Query  295  MSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAIENGDYISPHEYGR  344
            MSHQERN   +AY H AE LEER  ++Q W+D L A +   +ISP EY++
Sbjct  366  MSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA-NRERFISPFEYAK  414