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Homologs of escV gene of JQ747540

201

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) escV
( YP_003236089.1 )

putative translocator EscV

NC_013364
(Escherichia coli 11128)

0.0

2) escV
( YP_003366503.1 )

T3SS structural protein EscV

NC_013716
(Citrobacter rodentium ICC168)

0.0

3) escV
( YP_002331411.1 )

translocator EscV

NC_011601
(Escherichia coli E2348/69)

0.0

4) escV
( YP_003232152.1 )

T3SS structure protein EscV

NC_013361
(Escherichia coli 11368)

0.0

5) escV
( YP_003223476.1 )

translocator EscV

NC_013353
(Escherichia coli 12009)

0.0

6) escV
( YP_003501875.1 )

escV

NC_013941
(Escherichia coli CB9615)

0.0

7) ECH74115_5063
( YP_002273167.1 )

type III secretion protein, HrcV family

NC_011353
(Escherichia coli EC4115)

0.0

8) escV
( NP_290269.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

9) ECO55CA74_21230
( YP_006161351.1 )

escV

NC_017656
(Escherichia coli RM12579)

0.0

10) ECs4569
( NP_312596.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

11) escV
( YP_003080481.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

0.0

12) CDCO157_4304
( YP_006315169.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

13) Sbal117_2085
( YP_006037316.1 )

type III secretion protein, HrcV family

NC_017579
(Shewanella baltica OS117)

2e-139

14) Sbal_1969
( YP_001050342.1 )

secretion system apparatus protein SsaV

NC_009052
(Shewanella baltica OS155)

2e-139

15) Sbal195_2273
( YP_001554701.1 )

secretion system apparatus protein SsaV

NC_009997
(Shewanella baltica OS195)

2e-137

16) Sbal678_2283
( YP_005273490.1 )

type III secretion protein, HrcV family

NC_016901
(Shewanella baltica OS678)

2e-137

17) Sbal175_2396
( YP_006020953.1 )

type III secretion protein, HrcV family

NC_017571
(Shewanella baltica BA175)

1e-135

18) NT01EI_0958
( YP_002932406.1 )

type III secretion protein, HrcV family

NC_012779
(Edwardsiella ictaluri 93-146)

4e-129

19) ssaV
( YP_002923050.1 )

secretion system apparatus protein SsaV

NC_012751
(Candidatus Hamiltonella defensa T5A)

2e-126

20) esaV
( YP_003294934.1 )

type III secretion protein, HrcV family

NC_013508
(Edwardsiella tarda EIB202)

1e-124

21) esaV
( YP_005698433.1 )

protein EsaV

NC_017309
(Edwardsiella tarda FL6-60)

1e-124

22) SVI_2235
( YP_003556984.1 )

type III secretion system apparatus protein, HrcV family

NC_014012
(Shewanella violacea DSS12)

9e-125

23) ETAC_04215
( YP_007628334.1 )

secretion system apparatus protein SsaV

NC_020796
(Edwardsiella tarda C07-087)

2e-124

24) escV
( NP_902272.1 )

secretion system apparatus protein SsaV

NC_005085
(Chromobacterium violaceum ATCC 12472)

4e-122

25) flhA1
( NP_991814.1 )

secretion system apparatus protein SsaV

NC_005810
(Yersinia pestis 91001)

4e-121

26) A1122_03810
( YP_005520457.1 )

secretion system apparatus protein SsaV

NC_017168
(Yersinia pestis A1122)

4e-121

27) YPA_4017
( YP_653923.1 )

secretion system apparatus protein SsaV

NC_008150
(Yersinia pestis Antiqua)

4e-121

28) YPO0266
( YP_002345347.1 )

secretion system apparatus protein SsaV

NC_003143
(Yersinia pestis CO92)

4e-121

29) YPD4_0230
( YP_005503442.1 )

secretion system apparatus protein

NC_017154
(Yersinia pestis D106004)

4e-121

30) YPD8_0235
( YP_005507318.1 )

secretion system apparatus protein

NC_017160
(Yersinia pestis D182038)

4e-121

31) YPC_0742
( YP_005622728.1 )

secretion system apparatus protein

NC_017265
(Yersinia pestis Harbin 35)

4e-121

32) y0525
( NP_667862.1 )

secretion system apparatus protein SsaV

NC_004088
(Yersinia pestis KIM)

4e-121

33) YPDSF_3705
( YP_001165028.1 )

secretion system apparatus protein SsaV

NC_009381
(Yersinia pestis Pestoides F)

4e-121

34) YPZ3_0228
( YP_003566400.1 )

secretion system apparatus protein

NC_014029
(Yersinia pestis Z176003)

4e-121

35) YpsIP31758_3819
( YP_001402773.1 )

secretion system apparatus protein SsaV

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-120

36) YPK_3907
( YP_001722625.1 )

secretion system apparatus protein SsaV

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-120

37) YPTB0322
( YP_068868.1 )

secretion system apparatus protein SsaV

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-120

38) YPTS_0346
( YP_001870792.1 )

secretion system apparatus protein SsaV

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-120

39) HCH_05101
( YP_436207.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

5e-118

40) YE105_C0332
( YP_004296533.1 )

Secretion system apparatus protein ssaV

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-116

41) Y11_35391
( YP_006007038.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017564
(Yersinia enterocolitica Y11)

1e-115

42) SG1300
( YP_454980.1 )

secretion system apparatus protein SsaV

NC_007712
(Sodalis glossinidius morsitans)

2e-110

43) HCH_03273
( YP_434455.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

2e-107

44) lcrD
( YP_004677271.1 )

Low calcium response locus protein D

NC_015717
(Hyphomicrobium sp. MC1)

1e-105

45) ssaV
( YP_005242315.1 )

secretion system apparatus protein SsaV

NC_016857
(Salmonella enterica ST4/74)

2e-102

46) CFSAN002050_13465
( YP_008260604.1 )

secretion system apparatus protein SsaV

NC_021818
(Salmonella enterica CFSAN002050)

3e-102

47) SE451236_12935
( YP_008265613.1 )

secretion system apparatus protein SsaV

NC_021820
(Salmonella enterica 08-1736)

3e-102

48) ssaV
( YP_005237284.1 )

secretion system apparatus protein SsaV

NC_016856
(Salmonella enterica 14028S)

3e-102

49) SBOV14111
( YP_008505281.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

3e-102

50) SEEH1578_16305
( YP_008247320.1 )

secretion system apparatus protein SsaV

NC_021810
(Salmonella enterica 41578)

3e-102

51) SU5_02030
( YP_006087664.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017623
(Salmonella enterica B182)

3e-102

52) SEEB0189_12465
( YP_008308808.1 )

secretion system apparatus protein SsaV

NC_021844
(Salmonella enterica CFSAN000189)

3e-102

53) CFSAN001921_10075
( YP_008255389.1 )

secretion system apparatus protein SsaV

NC_021814
(Salmonella enterica CFSAN001921)

3e-102

54) CFSAN001992_04520
( YP_007470662.1 )

secretion system apparatus protein SsaV

NC_020307
(Salmonella enterica CFSAN001992)

3e-102

55) CFSAN002069_01930
( YP_008249246.1 )

secretion system apparatus protein SsaV

NC_021812
(Salmonella enterica CFSAN002069)

3e-102

56) SeD_A1929
( YP_002215718.1 )

secretion system apparatus protein SsaV

NC_011205
(Salmonella enterica CT_02021853)

3e-102

57) STMMW_14191
( YP_005232473.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

3e-102

58) ssaV
( NP_460379.1 )

secretion system apparatus protein SsaV

NC_003197
(Salmonella enterica LT2)

3e-102

59) ssaV
( YP_002243731.1 )

secretion system apparatus protein SsaV

NC_011294
(Salmonella enterica P125109)

3e-102

60) SPAB_01911
( YP_001588134.1 )

secretion system apparatus protein SsaV

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-102

61) ssaV
( YP_005181258.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

3e-102

62) SNSL254_A1525
( YP_002040666.1 )

secretion system apparatus protein SsaV

NC_011080
(Salmonella enterica SL254)

3e-102

63) SeHA_C1547
( YP_002045417.1 )

secretion system apparatus protein SsaV

NC_011083
(Salmonella enterica SL476)

3e-102

64) SeAg_B1759
( YP_002146628.1 )

secretion system apparatus protein SsaV

NC_011149
(Salmonella enterica SL483)

3e-102

65) STMDT12_C14300
( YP_005247126.1 )

secretion system apparatus protein SsaV

NC_016860
(Salmonella enterica T000240)

3e-102

66) STU288_03390
( YP_007901783.1 )

secretion system apparatus protein SsaV

NC_021151
(Salmonella enterica U288)

3e-102

67) ssaV
( YP_005251918.1 )

secretion system apparatus protein SsaV

NC_016863
(Salmonella enterica UK-1)

3e-102

68) SSPA1337
( YP_002142176.1 )

secretion system apparatus protein SsaV

NC_011147
(Salmonella enterica AKU12601)

4e-102

69) ssaV
( YP_150690.1 )

Secretion system apparatus

NC_006511
(Salmonella enterica ATCC 9150)

4e-102

70) SeSA_A1510
( YP_002114427.1 )

secretion system apparatus protein SsaV

NC_011094
(Salmonella enterica CVM19633)

4e-102

71) ssaV
( YP_216422.1 )

secretion system apparatus protein SsaV

NC_006905
(Salmonella enterica SC-B67)

4e-102

72) ssaV
( YP_005396811.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

6e-102

73) SN31241_24840
( YP_008360400.1 )

Secretion system apparatus protein SsaV

NC_021902
(Salmonella enterica USMARC-S3124.1)

6e-102

74) ssaV
( YP_002226671.1 )

secretion system apparatus protein SsaV

NC_011274
(Salmonella enterica 287/91)

6e-102

75) ssaV
( YP_008480901.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

6e-102

76) ssaV
( YP_005212439.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

6e-102

77) I137_05675
( YP_008380645.1 )

secretion system apparatus protein SsaV

NC_021984
(Salmonella enterica S06004)

6e-102

78) ssaV
( YP_002637873.1 )

secretion system apparatus protein SsaV

NC_012125
(Salmonella enterica RKS4594)

9e-102

79) yscV
( YP_005082203.1 )

Low calcium response locus protein D (LcrD)

NC_016642
(Pseudovibrio sp. FO-BEG1)

2e-101

80) YE105_P0016
( YP_004424918.1 )

low calcium response locus membrane protein D,required for Yop secretion

NC_015475
(Yersinia enterocolitica 105.5R(r))

5e-100

81) Y11_p0841
( YP_006007932.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017565
(Yersinia enterocolitica Y11)

5e-100

82) yscV
( NP_995377.1 )

putative membrane-bound Yop protein YscV

NC_005813
(Yersinia pestis 91001)

6e-100

83) lcrD
( YP_001604466.1 )

type III secretion protein LcrD

NC_010157
(Yersinia pestis Angola)

6e-100

84) YPA_CD0028
( YP_636820.1 )

membrane-bound Yop protein

NC_008122
(Yersinia pestis Antiqua)

6e-100

85) yscV
( NP_395168.1 )

low calcium response protein D

NC_003131
(Yersinia pestis CO92)

6e-100

86) yscV
( YP_005503168.1 )

low calcium response protein D

NC_017153
(Yersinia pestis D106004)

6e-100

87) yscV
( YP_005506951.1 )

low calcium response protein D

NC_017157
(Yersinia pestis D182038)

6e-100

88) YPDSF_3983
( YP_001154612.1 )

membrane-bound Yop protein

NC_009377
(Yersinia pestis Pestoides F)

6e-100

89) yscV
( YP_003560527.1 )

low calcium response protein D

NC_014017
(Yersinia pestis Z176003)

6e-100

90) pYV0060
( YP_068469.1 )

lcrD, yscV; membrane-bound Yop protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

6e-100

91) YPTS_4279
( YP_001874679.1 )

HrcV family type III secretion protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

6e-100

92) lcrD
( YP_001004072.1 )

low calcium response locus membrane protein d

NC_008791
(Yersinia enterocolitica 8081)

1e-99

93) NH44784_014751
( YP_008028570.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-99

94) ssaV
( NP_456114.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

6e-99

95) STBHUCCB_13720
( YP_005216930.1 )

Secretion system apparatus protein ssaV

NC_016832
(Salmonella enterica P-stx-12)

6e-99

96) ssaV
( NP_805085.1 )

secretion system apparatus protein SsaV

NC_004631
(Salmonella enterica Ty2)

6e-99

97) TY21A_06515
( YP_007925607.1 )

secretion system apparatus protein SsaV

NC_021176
(Salmonella enterica Ty21a)

6e-99

98) mxiA
( YP_005712039.1 )

MxiA, innermembrane protein, component of the Mxi-Spa secretion machinery

NC_017319
(Shigella flexneri 2002017)

6e-99

99) SARI_01568
( YP_001570604.1 )

secretion system apparatus protein SsaV

NC_010067
(Salmonella enterica RSK2980)

2e-98

100) sctV
( YP_007748.1 )

type III secretion pathway protein SctV

NC_005861
(Candidatus Protochlamydia amoebophila UWE25)

4e-97

101) SbBS512_A0181
( YP_001883210.1 )

MxiA

NC_010660
(Shigella boydii CDC 3083-94)

2e-96

102) mxiA
( NP_858280.1 )

Mxi-Spa secretion machinery protein MxiA

NC_004851
(Shigella flexneri 301)

3e-96

103) mxiA
( YP_313364.1 )

MxiA

NC_007385
(Shigella sonnei Ss046)

3e-96

104) lcrD
( YP_001654429.1 )

low calcium response protein D

NC_010287
(Chlamydia trachomatis 434/Bu)

1e-95

105) A363_00093
( YP_007731817.1 )

type III secretion system protein InvA

NC_020966
(Chlamydia trachomatis A/363)

1e-95

106) A5291_00092
( YP_007723628.1 )

type III secretion system protein InvA

NC_020939
(Chlamydia trachomatis A/5291)

1e-95

107) A7249_00092
( YP_007728101.1 )

type III secretion system protein InvA

NC_020944
(Chlamydia trachomatis A/7249)

1e-95

108) lcrD
( YP_327889.1 )

low calcium response protein D

NC_007429
(Chlamydia trachomatis A/HAR-13)

1e-95

109) lcrD
( YP_005155925.1 )

low calcium response protein D

NC_016798
(Chlamydia trachomatis A2497)

1e-95

110) CTO_0095
( YP_005812900.1 )

Type III secretion inner membrane protein SctV

NC_017437
(Chlamydia trachomatis A2497)

1e-95

111) lcrD
( YP_002888593.1 )

low calcium response protein D

NC_012687
(Chlamydia trachomatis B/TZ1A828/OT)

1e-95

112) sctV
( YP_005811142.1 )

type III secretion inner membrane protein SctV

NC_017434
(Chlamydia trachomatis D-EC)

1e-95

113) sctV
( YP_005812020.1 )

type III secretion inner membrane protein SctV

NC_017436
(Chlamydia trachomatis D-LC)

1e-95

114) O176_00485
( YP_008467505.1 )

Low calcium response locus protein D

NC_022119
(Chlamydia trachomatis D/13-96)

1e-95

115) O177_00490
( YP_008442215.1 )

Low calcium response locus protein D

NC_022109
(Chlamydia trachomatis D/14-96)

1e-95

116) SOTOND1_00092
( YP_007732716.1 )

type III secretion system protein InvA

NC_020967
(Chlamydia trachomatis D/SotonD1)

1e-95

117) SOTOND5_00092
( YP_007727210.1 )

type III secretion system protein InvA

NC_020943
(Chlamydia trachomatis D/SotonD5)

1e-95

118) SOTOND6_00092
( YP_007733610.1 )

type III secretion system protein InvA

NC_020968
(Chlamydia trachomatis D/SotonD6)

1e-95

119) lcrD
( NP_219593.1 )

low calcium response D

NC_000117
(Chlamydia trachomatis D/UW-3/CX)

1e-95

120) O175_00485
( YP_008441297.1 )

Low calcium response locus protein D

NC_022108
(Chlamydia trachomatis E/12-94)

1e-95

121) O169_00485
( YP_008465651.1 )

Low calcium response locus protein D

NC_022117
(Chlamydia trachomatis F/1-93)

1e-95

122) O173_00485
( YP_008440369.1 )

Low calcium response locus protein D

NC_022107
(Chlamydia trachomatis F/11-96)

1e-95

123) O170_00485
( YP_008439442.1 )

Low calcium response locus protein D

NC_022106
(Chlamydia trachomatis F/2-93)

1e-95

124) O172_00485
( YP_008466575.1 )

Low calcium response locus protein D

NC_022118
(Chlamydia trachomatis F/6-94)

1e-95

125) SOTONF3_00092
( YP_007730032.1 )

type III secretion system protein InvA

NC_020964
(Chlamydia trachomatis F/SotonF3)

1e-95

126) lcrD
( YP_006360029.1 )

low calcium response protein D

NC_017951
(Chlamydia trachomatis F/SW4)

1e-95

127) lcrD
( YP_006361777.1 )

low calcium response protein D

NC_017953
(Chlamydia trachomatis F/SW5)

1e-95

128) G11074_00465
( YP_005814810.1 )

low calcium response protein D

NC_017440
(Chlamydia trachomatis G/11074)

1e-95

129) G11222_00470
( YP_005808363.1 )

low calcium response protein D

NC_017430
(Chlamydia trachomatis G/11222)

1e-95

130) CTG9301_00465
( YP_005810217.1 )

low calcium response protein D

NC_017432
(Chlamydia trachomatis G/9301)

1e-95

131) G9768_00465
( YP_005807444.1 )

low calcium response protein D

NC_017429
(Chlamydia trachomatis G/9768)

1e-95

132) SOTONG1_00091
( YP_007725420.1 )

type III secretion system protein InvA

NC_020941
(Chlamydia trachomatis G/SotonG1)

1e-95

133) SOTONIA1_00092
( YP_007735394.1 )

type III secretion system protein InvA

NC_020970
(Chlamydia trachomatis Ia/SotonIa1)

1e-95

134) SOTONIA3_00092
( YP_007724527.1 )

type III secretion system protein InvA

NC_020940
(Chlamydia trachomatis Ia/SotonIa3)

1e-95

135) O178_00480
( YP_008468435.1 )

Low calcium response locus protein D

NC_022120
(Chlamydia trachomatis Ia20-97)

1e-95

136) O180_00480
( YP_008469362.1 )

Low calcium response locus protein D

NC_022121
(Chlamydia trachomatis J/31-98)

1e-95

137) CTJTET1_00470
( YP_008348792.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021892
(Chlamydia trachomatis J/6276tet1)

1e-95

138) SOTONK1_00092
( YP_007730924.1 )

type III secretion system protein InvA

NC_020965
(Chlamydia trachomatis K/SotonK1)

1e-95

139) L1115_00091
( YP_007714719.1 )

type III secretion system protein InvA

NC_020929
(Chlamydia trachomatis L1/115)

1e-95

140) L11322_00091
( YP_007737183.1 )

type III secretion system protein InvA

NC_020972
(Chlamydia trachomatis L1/1322/p2)

1e-95

141) L1224_00091
( YP_007738073.1 )

type III secretion system protein InvA

NC_020973
(Chlamydia trachomatis L1/224)

1e-95

142) L1440_00091
( YP_007721845.1 )

type III secretion system protein InvA

NC_020937
(Chlamydia trachomatis L1/440/LN)

1e-95

143) L225667R_00091
( YP_007715608.1 )

type III secretion system protein InvA

NC_020930
(Chlamydia trachomatis L2/25667R)

1e-95

144) CTLFINAL_01820
( YP_007852306.1 )

low calcium response protein D

NC_021052
(Chlamydia trachomatis L2/434/Bu(f))

1e-95

145) CTLINITIAL_01820
( YP_007851366.1 )

low calcium response protein D

NC_021050
(Chlamydia trachomatis L2/434/Bu(i))

1e-95

146) L2B795_00091
( YP_007722737.1 )

type III secretion system protein InvA

NC_020938
(Chlamydia trachomatis L2b/795)

1e-95

147) L2B8200_00091
( YP_007728998.1 )

type III secretion system protein InvA

NC_020945
(Chlamydia trachomatis L2b/8200/07)

1e-95

148) L2BAMS1_00091
( YP_007718280.1 )

type III secretion system protein InvA

NC_020933
(Chlamydia trachomatis L2b/Ams1)

1e-95

149) L2BAMS2_00091
( YP_007719170.1 )

type III secretion system protein InvA

NC_020934
(Chlamydia trachomatis L2b/Ams2)

1e-95

150) L2BAMS3_00091
( YP_007741631.1 )

type III secretion system protein InvA

NC_020977
(Chlamydia trachomatis L2b/Ams3)

1e-95

151) L2BAMS4_00091
( YP_007742521.1 )

type III secretion system protein InvA

NC_020978
(Chlamydia trachomatis L2b/Ams4)

1e-95

152) L2BAMS5_00091
( YP_007720955.1 )

type III secretion system protein InvA

NC_020936
(Chlamydia trachomatis L2b/Ams5)

1e-95

153) L2BCAN1_00093
( YP_007720062.1 )

type III secretion system protein InvA

NC_020935
(Chlamydia trachomatis L2b/Canada1)

1e-95

154) L2BCAN2_00091
( YP_007717388.1 )

type III secretion system protein InvA

NC_020932
(Chlamydia trachomatis L2b/Canada2)

1e-95

155) L2BCV204_00091
( YP_007740741.1 )

type III secretion system protein InvA

NC_020976
(Chlamydia trachomatis L2b/CV204)

1e-95

156) L2BLST_00091
( YP_007739851.1 )

type III secretion system protein InvA

NC_020975
(Chlamydia trachomatis L2b/LST)

1e-95

157) L2BUCH2_00091
( YP_007716498.1 )

type III secretion system protein InvA

NC_020931
(Chlamydia trachomatis L2b/UCH-2)

1e-95

158) L3404_00091
( YP_007738963.1 )

type III secretion system protein InvA

NC_020974
(Chlamydia trachomatis L3/404/LN)

1e-95

159) CTRC342_00470
( YP_008346904.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021890
(Chlamydia trachomatis RC-F(s)/342)

1e-95

160) CTRC852_00475
( YP_008345031.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021888
(Chlamydia trachomatis RC-F(s)/852)

1e-95

161) CTRC69_00470
( YP_008350882.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021895
(Chlamydia trachomatis RC-F/69)

1e-95

162) CTRC122_00465
( YP_008347856.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021891
(Chlamydia trachomatis RC-J(s)/122)

1e-95

163) CTRC943_00465
( YP_008351805.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021896
(Chlamydia trachomatis RC-J/943)

1e-95

164) CTRC953_00470
( YP_008345986.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021889
(Chlamydia trachomatis RC-J/953)

1e-95

165) CTRC966_00475
( YP_008353652.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021898
(Chlamydia trachomatis RC-J/966)

1e-95

166) CTRC971_00475
( YP_008354578.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021899
(Chlamydia trachomatis RC-J/971)

1e-95

167) CTRC3_00470
( YP_008352732.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021897
(Chlamydia trachomatis RC-L2(s)/3)

1e-95

168) CTRC46_00470
( YP_008344107.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021887
(Chlamydia trachomatis RC-L2(s)/46)

1e-95

169) CTRC55_00475
( YP_008349749.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_021893
(Chlamydia trachomatis RC-L2/55)

1e-95

170) lcrD
( YP_001653441.1 )

low calcium response protein D

NC_010280
(Chlamydia trachomatis UCH-1)

1e-95

171) CTL2C_683
( YP_004717220.1 )

regulatory protein

NC_015744
(Chlamydia trachomatis L2c)

6e-96

172) O179_00475
( YP_008443133.1 )

Low calcium response locus protein D

NC_022110
(Chlamydia trachomatis J/27-97)

7e-96

173) lcrD
( YP_515465.1 )

type III secretory flagellar biosynthesis

NC_007899
(Chlamydophila felis Fe/C-56)

7e-96

174) E11023_00470
( YP_005809292.1 )

low calcium response protein D

NC_017431
(Chlamydia trachomatis E/11023)

9e-96

175) E150_00475
( YP_005813885.1 )

low calcium response protein D

NC_017439
(Chlamydia trachomatis E/150)

9e-96

176) BOUR_00092
( YP_007736288.1 )

type III secretion system protein InvA

NC_020971
(Chlamydia trachomatis E/Bour)

9e-96

177) SOTONE4_00092
( YP_007734501.1 )

type III secretion system protein InvA

NC_020969
(Chlamydia trachomatis E/SotonE4)

9e-96

178) SOTONE8_00092
( YP_007726313.1 )

type III secretion system protein InvA

NC_020942
(Chlamydia trachomatis E/SotonE8)

9e-96

179) lcrD
( YP_006360901.1 )

low calcium response protein D

NC_017952
(Chlamydia trachomatis E/SW3)

9e-96

180) lcrD
( YP_007539790.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_020511
(Chlamydia trachomatis IU824)

9e-96

181) lcrD
( YP_007540665.1 )

low calcium response protein D (predicted to be part of the TTSS apparatus)

NC_020512
(Chlamydia trachomatis IU888)

9e-96

182) lcrD
( YP_005815725.1 )

low calcium response protein D

NC_017441
(Chlamydia trachomatis Sweden2)

9e-96

183) sctV
( NP_296743.1 )

type III secretion inner membrane protein SctV

NC_002620
(Chlamydia muridarum Nigg)

2e-95

184) lcrD
( YP_002887716.1 )

low calcium response protein D

NC_012686
(Chlamydia trachomatis Jali20)

2e-95

185) CAB445
( YP_219859.1 )

membrane transport protein

NC_004552
(Chlamydophila abortus S26/3)

3e-95

186) sctV
( YP_004672133.1 )

type III secretion integral inner membrane protein

NC_015713
(Simkania negevensis Z)

4e-95

187) sctV, cdsV
( YP_004651583.1 )

type III secretion integral inner membrane protein

NC_015702
(Parachlamydia acanthamoebae UV-7)

8e-95

188) flhA
( YP_008112701.1 )

putative flagellar biosynthesis protein FlhA

NC_021505
(Pseudomonas putida NBRC 14164)

1e-94

189) B712_0503
( YP_006740586.1 )

type III secretion , HrcV family protein

NC_018626
(Chlamydia psittaci NJ1)

1e-94

190) bcrD
( YP_006899813.1 )

type III secretion pore protein

NC_018829
(Bordetella bronchiseptica MO149)

9e-94

191) bcrD
( YP_005590294.1 )

putative type III secretion pore protein

NC_017223
(Bordetella pertussis CS)

1e-93

192) bcrD
( NP_880904.1 )

type III secretion pore protein

NC_002929
(Bordetella pertussis Tohama I)

1e-93

193) bcrD
( YP_006625517.1 )

type III secretion pore protein

NC_018518
(Bordetella pertussis 18323)

9e-94

194) bcrD
( YP_006895356.1 )

type III secretion pore protein

NC_018828
(Bordetella parapertussis Bpp5)

3e-93

195) bcrD
( YP_006967908.1 )

type III secretion pore protein

NC_019382
(Bordetella bronchiseptica 253)

4e-93

196) bcrD
( NP_888157.1 )

type III secretion pore protein

NC_002927
(Bordetella bronchiseptica RB50)

3e-92

197) PMI2694
( YP_002152395.1 )

type III secretion system protein

NC_010554
(Proteus mirabilis HI4320)

1e-91

198) invA
( YP_002413886.1 )

invasion protein

NC_011751
(Escherichia coli UMN026)

9e-91

199) bcrD
( NP_884466.1 )

type III secretion pore protein

NC_002928
(Bordetella parapertussis 12822)

6e-90

200) eivA
( YP_006145313.1 )

type III secretion apparatus protein, invasion protein

NC_017646
(Escherichia coli CE10)

2e-89

201) SG0563
( YP_454243.1 )

type III secretion apparatus InvA

NC_007712
(Sodalis glossinidius morsitans)

3e-88

• Sequence Alignments

1) escV in NC_013364


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  857 bits (3246),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/675 (79%), Positives = 624/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS+AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPTLVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPLILNLSNN  360
            GFPT VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N++  
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  IYSSDIAQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNEANQQLAHLSGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHLSG+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENISIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEENISIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVRGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERSEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PER+EQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

2) escV in NC_013716


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  854 bits (3234),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/675 (79%), Positives = 624/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNVFEKVESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ F K +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS+AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIIQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDII+QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPTLVFLFLAVCLLGIAWKLQKKRAFGSTNSKDSLGGDLSNSQNVSPGAEPLILNLSNN  360
            GFPT VF++LA+CLLGI+W+L+KK   G   + D+ + D++ +QN+++GAEPL +N++  
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  IYSADITQQIEVVRWGFFEESGIPLPKIIVNPIKNNDSVVEFLLYQESIYKDTLTKDTVY  420
            IY +DI QQIEV+RW FFEESGIPLP I++N  +N+D+V+E++LYQES+ K+T+ KD +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHGDISFEFVQEKISINSIVYKTNEANQQLAHLSGMNVYSETNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++K+S+ + +YKT+  NQQLAHLSG+ VYS  N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENISIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEENISIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVRGTILNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERSEQIIGFLKNIVNPTSNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PER+EQII +LK++V P +NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

3) escV in NC_011601


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  843 bits (3192),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/675 (79%), Positives = 626/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS+AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPTLVFLFLAVCLLGIAWKLQKKRTFGAGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFPT VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

4) escV in NC_013353


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  839 bits (3178),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/675 (79%), Positives = 623/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS+AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMIVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LM+V AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPTLVFLFLAVCLLGIAWKLQKKKTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFPT VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLTDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T+  D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSANSIVYKTNEANQQLAHVSGMDVYAKTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAH+SG+ VY+  N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENISIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEENISIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVRGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERSEQIIGFLKNIVNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PER+EQII +LK++V P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

5) escV in NC_013361


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  839 bits (3178),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/675 (79%), Positives = 623/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS+AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMIVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LM+V AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPTLVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFPT VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLTDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T+  D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSANSIVYKTNEANQQLAHVSGMDVYAKTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAH+SG+ VY+  N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENISIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEENISIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVRGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERSEQIIGFLKNIVNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PER+EQII +LK++V P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

6) ECH74115_5063 in NC_011353


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

7) escV in NC_002655


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

8) ECs4569 in NC_002695


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

9) escV in NC_013008


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

10) escV in NC_013941


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

11) ECO55CA74_21230 in NC_017656


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

12) CDCO157_4304 in NC_017906


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  801 bits (3031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/675 (79%), Positives = 625/675 (93%), Gaps = 0/675 (0%)

Query  1    MNKLLNIFKKAESYHDlilalfffmavmmmiiPLPTVVVDIIIAINISTALLLLMLSIYI  60
            M+K+L+ FKK +SYHDLILA+FFFMAVMMMIIPLPT+VVD+IIAINISTALLLLMLSIYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   KNPLELTSFPTILLITTLMRLSLSVSTTRLILLHHDAGDIIYSfgnfvvggnivvglvif  120
            K+PL+L+ FPTILLITTLMRLSLSVSTTRLILLHHDAG+IIYSFGNFVVGGNIVVGL+IF
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQK  180
            TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVID++EAK LRS+VQK
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPfsaalslfsvlsvGDA  240
            ESQFYG+MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFS AL+LFSVLSVGDA
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIP  300
            LVAQIPAL+I VTAGVVVTRVPGE++KE+NLAGDI++QVS N+RPF+ISA LMLV AIIP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  301  GFPalvflflavcllGIAWKLQKKRTFGTGNNKDAMGADLSNSQNISPGAEPlilnlssn  360
            GFP+ VF++LA+CLLGI+W+L+KK   G     D+ ++D++ +QNI++GAEPL +N+++ 
Sbjct  301  GFPTSVFMILALCLLGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG  360

Query  361  iyssDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQESIYKDTLIDDTVY  420
            IY +DI QQIEVMRW+FFEESGIPLP I++N  +N+D+ IE++LYQES+ K+T++ D +Y
Sbjct  361  IYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIY  420

Query  421  FEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN  480
            FE+GH   +FEF ++KLS  + +YKT+  NQQLAHL+G+ VY++ N+KI FLL+KLVL+N
Sbjct  421  FEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLAN  480

Query  481  AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFET  540
            AKEFIG+QE+RYLMDIME+KY+ELVKELQRQLG++KIVDILQRLVEEN+SIRDLRTIFET
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  541  LIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSG  600
            LIFWS+KEKDVV+LCEYVRI+LRRHILGRY+V+GT+L+VWLIGS++ENELRESIRQTSSG
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  601  SYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKMIEGSFPSVPVLSFQEVGN  660
            SYLNI+PERTEQII +LK+++ P  NGV+LTALDIRRY+KK+IE +FPS PVLSFQEVGN
Sbjct  601  SYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGN  660

Query  661  NIELKVLGTVNDFRA  675
            NIELKVLGTVNDF A
Sbjct  661  NIELKVLGTVNDFNA  675

13) Sbal117_2085 in NC_017579


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  489 bits (1845),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 339/678 (50%), Positives = 528/678 (78%), Gaps = 26/678 (3%)

Query  8    LSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLEFS  67
            + K  + HD+IL+  + +AV MMI+PLPT +VD++IA+N++ +++LLM++IYI+ PL++S
Sbjct  8    FKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLS  67

Query  68   VFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiitivq  127
            VFP++LLITTL RL+L++ST+RLILL+HDAG+I+Y+FGNFVVGGN+ VG+IIF+IITIVQ
Sbjct  68   VFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQ  127

Query  128  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGA  187
            F+VITKG+ERVAEVSARFSLDGMPGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGA
Sbjct  128  FMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGA  187

Query  188  MDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPS  247
            MDGAMKFVKGDAIA+II++L N++GG+ +G+ Q +M+ ++AL  ++VLSVGD+L+AQIP+
Sbjct  188  MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPA  247

Query  248  LLISVTAGLIVTRVPGEQ--RQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            LLI VTAG++VTRVPGE+   +NLA +++ QV+ +  ++ +++++M++FA+IPGFP  VF
Sbjct  248  LLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF  307

Query  306  GTLGSAVLGASWWLTRQQKRASAQGDESHFTEAGKSEMTNVDNMAPGAVPLILYLGADVP  365
              L+  +LG SW    Q K+ S  G  + + +++ +++T  +N+++GA PL + +G+++ 
Sbjct  308  MILALCLLGISW----QLKKKSVAGMKGTL-DPSSTDITGNQNITSGAEPLSINIGGGIY  362

Query  366  INGVKEALQKLRWQWFEQLGVPLPEIQL-QIAKKGTLGRCDVLLYQEPVLQLQLAPQEVL  424
              ++ + ++ +RW+ FE+ G+PLP I + Q  +K+ +   +++LYQE+V + Q   ++++
Sbjct  363  RTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNV--IELFLYQESV-HKQTIVKDII  419

Query  425  LIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQ--------GLAVC-RDEQIPAYVM  475
             ++P   +P    ++ FS+++L    G  L +++++        GL+V   +++   +++
Sbjct  420  YFEPGHILP----PFEFSHDKLSF--GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLL  473

Query  476  GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRD  535
             K++   A EFIG+QE+RYLMD ME +Y+ELVKELQR L++GK+ +ILQRLVEE IS+RD
Sbjct  474  RKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRD  533

Query  536  LRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRES  595
            LRTIFETL+ W +KEKD+++L EYVRI+LRRHI  +++     + V ++G  +EN +RES
Sbjct  534  LRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRES  593

Query  596  IRQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVL  655
            IRQ+++GSY  +   +T+QI+  +++ + PE+  VLLT+LD+RRY++K++E+ + STPVL
Sbjct  594  IRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVL  653

Query  656  SFQELGDDAEIKVIGQVD  673
            SFQE+G++ E+KV+G V+
Sbjct  654  SFQEVGNNIELKVLGTVN  671

14) Sbal_1969 in NC_009052


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  489 bits (1845),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 339/678 (50%), Positives = 528/678 (78%), Gaps = 26/678 (3%)

Query  8    LSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLEFS  67
            + K  + HD+IL+  + +AV MMI+PLPT +VD++IA+N++ +++LLM++IYI+ PL++S
Sbjct  8    FKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLS  67

Query  68   VFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiitivq  127
            VFP++LLITTL RL+L++ST+RLILL+HDAG+I+Y+FGNFVVGGN+ VG+IIF+IITIVQ
Sbjct  68   VFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQ  127

Query  128  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGA  187
            F+VITKG+ERVAEVSARFSLDGMPGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGA
Sbjct  128  FMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGA  187

Query  188  MDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPS  247
            MDGAMKFVKGDAIA+II++L N++GG+ +G+ Q +M+ ++AL  ++VLSVGD+L+AQIP+
Sbjct  188  MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPA  247

Query  248  LLISVTAGLIVTRVPGEQ--RQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            LLI VTAG++VTRVPGE+   +NLA +++ QV+ +  ++ +++++M++FA+IPGFP  VF
Sbjct  248  LLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF  307

Query  306  GTLGSAVLGASWWLTRQQKRASAQGDESHFTEAGKSEMTNVDNMAPGAVPLILYLGADVP  365
              L+  +LG SW    Q K+ S  G  + + +++ +++T  +N+++GA PL + +G+++ 
Sbjct  308  MILALCLLGISW----QLKKKSVAGMKGTL-DPSSTDITGNQNITSGAEPLSINIGGGIY  362

Query  366  INGVKEALQKLRWQWFEQLGVPLPEIQL-QIAKKGTLGRCDVLLYQEPVLQLQLAPQEVL  424
              ++ + ++ +RW+ FE+ G+PLP I + Q  +K+ +   +++LYQE+V + Q   ++++
Sbjct  363  RTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNV--IELFLYQESV-HKQTIVKDII  419

Query  425  LIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQ--------GLAVC-RDEQIPAYVM  475
             ++P   +P    ++ FS+++L    G  L +++++        GL+V   +++   +++
Sbjct  420  YFEPGHILP----PFEFSHDKLSF--GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLL  473

Query  476  GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRD  535
             K++   A EFIG+QE+RYLMD ME +Y+ELVKELQR L++GK+ +ILQRLVEE IS+RD
Sbjct  474  RKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRD  533

Query  536  LRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRES  595
            LRTIFETL+ W +KEKD+++L EYVRI+LRRHI  +++     + V ++G  +EN +RES
Sbjct  534  LRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRES  593

Query  596  IRQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVL  655
            IRQ+++GSY  +   +T+QI+  +++ + PE+  VLLT+LD+RRY++K++E+ + STPVL
Sbjct  594  IRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVL  653

Query  656  SFQELGDDAEIKVIGQVD  673
            SFQE+G++ E+KV+G V+
Sbjct  654  SFQEVGNNIELKVLGTVN  671

15) Sbal195_2273 in NC_009997


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  482 bits (1818),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 337/677 (50%), Positives = 525/677 (78%), Gaps = 24/677 (3%)

Query  8    LSKAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFS  67
            + K  + HD+IL+  + +AV MMI+PLPT ++D++IA+N++ +++LLM++IYI+ PL++S
Sbjct  8    FKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLS  67

Query  68   VFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiitivq  127
            VFP++LLITTL RL+L++ST+RLILL+HDAG+I+Y+FGNFVVGGN+ VG+IIF+IITIVQ
Sbjct  68   VFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQ  127

Query  128  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGA  187
            F+VITKG+ERVAEVSARFSLDGMPGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGA
Sbjct  128  FMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGA  187

Query  188  MDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPS  247
            MDGAMKFVKGDAIA+II++L N++GG+ +G+ Q +M+ ++AL  ++VLSVGD+L+AQIP+
Sbjct  188  MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPA  247

Query  248  LLISVTAGLIVTRVPGEQ--RQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            LLI VTAG++VTRVPGE+   +NLA +++ QV+ +  ++ +++++M++FA+IPGFP  VF
Sbjct  248  LLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF  307

Query  306  GTLGSVVLGASLWLKRQQKRASAQGEESHFTDAGKSDTANVDNMAPGAVPLILYLGADVP  365
              L+  +LG S W   Q K+ S  G  + + D++ +D +  +N+++GA PL + +G+++ 
Sbjct  308  MILALCLLGIS-W---QLKKKSVAGMKGTL-DPSSTDITGNQNITSGAEPLSINIGGGIY  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQLVPQEALL  425
              ++ + ++ +RW+ FE+ G+PLP I ++  ++      +++LYQESV + Q + ++ + 
Sbjct  363  RTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKD-NVIELFLYQESV-HKQTIVKDIIY  420

Query  426  IDSIATIPCRVESIPFSNQRLHWIKGNALEQAEAQ--------GLAVC-RDEQIPAYVMG  476
            +++   +P    ++ FS+++L    G  L +++++        GL+V   +++   +++ 
Sbjct  421  FEPGHILP----PFEFSHDKLSF--GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLR  474

Query  477  KVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDL  536
            K++   A EFIG+QE+RYLMD ME +Y+ELVKELQR L++GK+ +ILQRLVEE IS+RDL
Sbjct  475  KLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDL  534

Query  537  RTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESI  596
            RTIFETL+ W +KEKD+++L EYVRI+LRRHI  +++     + V ++G  +EN +RESI
Sbjct  535  RTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESI  594

Query  597  RQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLS  656
            RQ+++GSY  +   +T+QI+  +++ + PE+  VLLT+LD+RRY++K++E+ + STPVLS
Sbjct  595  RQTSSGSYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  657  FQELGDDAEIKVIGQVD  673
            FQE+G++ E+KV+G V+
Sbjct  655  FQEVGNNIELKVLGTVN  671

16) Sbal678_2283 in NC_016901


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  482 bits (1818),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 337/677 (50%), Positives = 525/677 (78%), Gaps = 24/677 (3%)

Query  8    LSKAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFS  67
            + K  + HD+IL+  + +AV MMI+PLPT ++D++IA+N++ +++LLM++IYI+ PL++S
Sbjct  8    FKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLS  67

Query  68   VFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiitivq  127
            VFP++LLITTL RL+L++ST+RLILL+HDAG+I+Y+FGNFVVGGN+ VG+IIF+IITIVQ
Sbjct  68   VFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQ  127

Query  128  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGA  187
            F+VITKG+ERVAEVSARFSLDGMPGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGA
Sbjct  128  FMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGA  187

Query  188  MDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPS  247
            MDGAMKFVKGDAIA+II++L N++GG+ +G+ Q +M+ ++AL  ++VLSVGD+L+AQIP+
Sbjct  188  MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPA  247

Query  248  LLISVTAGLIVTRVPGEQ--RQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            LLI VTAG++VTRVPGE+   +NLA +++ QV+ +  ++ +++++M++FA+IPGFP  VF
Sbjct  248  LLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF  307

Query  306  GTLGSVVLGASLWLKRQQKRASAQGEESHFTDAGKSDTANVDNMAPGAVPLILYLGADVP  365
              L+  +LG S W   Q K+ S  G  + + D++ +D +  +N+++GA PL + +G+++ 
Sbjct  308  MILALCLLGIS-W---QLKKKSVAGMKGTL-DPSSTDITGNQNITSGAEPLSINIGGGIY  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQLVPQEALL  425
              ++ + ++ +RW+ FE+ G+PLP I ++  ++      +++LYQESV + Q + ++ + 
Sbjct  363  RTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKD-NVIELFLYQESV-HKQTIVKDIIY  420

Query  426  IDSIATIPCRVESIPFSNQRLHWIKGNALEQAEAQ--------GLAVC-RDEQIPAYVMG  476
            +++   +P    ++ FS+++L    G  L +++++        GL+V   +++   +++ 
Sbjct  421  FEPGHILP----PFEFSHDKLSF--GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLR  474

Query  477  KVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDL  536
            K++   A EFIG+QE+RYLMD ME +Y+ELVKELQR L++GK+ +ILQRLVEE IS+RDL
Sbjct  475  KLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDL  534

Query  537  RTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESI  596
            RTIFETL+ W +KEKD+++L EYVRI+LRRHI  +++     + V ++G  +EN +RESI
Sbjct  535  RTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESI  594

Query  597  RQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLS  656
            RQ+++GSY  +   +T+QI+  +++ + PE+  VLLT+LD+RRY++K++E+ + STPVLS
Sbjct  595  RQTSSGSYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  657  FQELGDDAEIKVIGQVD  673
            FQE+G++ E+KV+G V+
Sbjct  655  FQEVGNNIELKVLGTVN  671

17) Sbal175_2396 in NC_017571


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  476 bits (1795),  Expect = 1e-135, Method: Compositional matrix adjust.
 Identities = 332/672 (50%), Positives = 517/672 (77%), Gaps = 14/672 (2%)

Query  8    LSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLEFS  67
            + K  + HD+IL+  + +AV MMI+PLPT +VD++IA+N++ +++LLM++IYI+ PL++S
Sbjct  8    FKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLS  67

Query  68   VFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiitivq  127
            VFP++LLITTL RL+L++ST+RLILL+HDAG+I+Y+FGNFVVGGN+ VG+IIF+IITIVQ
Sbjct  68   VFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQ  127

Query  128  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGA  187
            F+VITKG+ERVAEVSARFSLDGMPGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGA
Sbjct  128  FMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGA  187

Query  188  MDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPS  247
            MDGAMKFVKGDAIA+II++L N++GG+ +G+ Q +M+ ++AL  ++VLSVGD+L+AQIP+
Sbjct  188  MDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPA  247

Query  248  LLISVTAGLIVTRVPGEQ--RQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            LLI VTAG++VTRVPGE+   +NLA +++ QV+ +  ++ +++++M++FA+IPGFP  VF
Sbjct  248  LLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF  307

Query  306  GTLGSVVLGASLWLTRQQKRASAQGDESHFTEAGKSEMANVDNMAPGAVPLILYLGADVP  365
              L+  +LG S W   Q K+ S  G  + + +++ ++++  +N+++GA PL + +G+++ 
Sbjct  308  MILALCLLGIS-W---QLKKKSVAGMKGTL-DPSSTDITGNQNITSGAEPLSINIGGGIY  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQL-QIAKKGTLGRCDVLLYQEPVLQLQLAPQEVL  424
              ++ + ++ +RW+ FE+ G+PLP I + Q  +K+ +   +++LYQE+V + Q   ++++
Sbjct  363  RTDIHQQIEVMRWKFFEESGIPLPGIVINQQNNKDNV--IELFLYQESV-HKQTIVKDII  419

Query  425  LIDPIATIPC---RVESIPFSNQRLHWIKGNaleqaeaqglalCRDEQIPAYVMGKVIDR  481
             ++P   +P      + ++F+ +       N      +       +++   +++ K++  
Sbjct  420  YFEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLA  479

Query  482  YAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFE  541
             A EFIG+QE+RYLMD ME +Y+ELVKELQR L++GK+ +ILQRLVEE IS+RDLRTIFE
Sbjct  480  NAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFE  539

Query  542  TLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTA  601
            TL+ W +KEKD+++L EYVRI+LRRHI  +++     + V ++G  +EN +RESIRQ+++
Sbjct  540  TLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSS  599

Query  602  GSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELG  661
            GSY  +   +T+QI+  +++ + PE+  VLLT+LD+RRY++K++E+ + STPVLSFQE+G
Sbjct  600  GSYLNITPERTEQIILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  662  DDAEIKVIGQVD  673
            ++ E+KV+G V+
Sbjct  660  NNIELKVLGTVN  671

18) NT01EI_0958 in NC_012779


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  455 bits (1714),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 302/636 (48%), Positives = 466/636 (74%), Gaps = 15/636 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N++ ++ LLM+++YI+ P+++S FP++LLITTL RL+L++ST+RLILL+HDAGEI+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            NF VGGN+ VGLI+F+IIT+VQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAG+
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA EA+  R+ VQKESQ+YGAMDGAMKFVKGDAIA+II++LVN+ GG+ +G+   +M+ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRR--NLASELTEQILRQRQa  283
            ++A + +++LSVGD+L+AQIPALLI ++AG++VTRVPGEN +  NLA+++ +Q+  + ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  284  lwivaavlalfaalPGFPTLIFLSLGAGLAAIAYSLRRKEQQhsphtashsaasRDESGQ  343
            + I A ++ +FA +PGFPT +F+ L+  L +I+  L++K       ++  ++     ++ 
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----VAGMKGTLDPSSTDI  340

Query  344  EGAPLLIGATplalrlpdalardpSLTQALATLRAEKLEQAGLPLPEIQIQTDNGFGPDQ  403
             G   + +++       ++      + Q +  +R   +E++G+PLP I I+ +N    + 
Sbjct  341  TGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNV  399

Query  404  FALLLYQEPVLAITLPHLALLDITAPPLRQAD-HRETLPFGGITLQWLSLEQAESSATIG  462
            + L+LYQE+V   T+    +    +  L   +  ++ L+FG+  L     E+ + +   G
Sbjct  400  IELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGA-ELYKTDSENQQLAHLSG  458

Query  463  VNSYQG-NARIAYLV-SLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARI  520
            +  Y + N +I +L+  L L   + EFIG+QEARYLMD ME++Y+ELVKELQRQL +++I
Sbjct  459  LTVYSSENEKIIFLLRKLVLAN-AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  521  ADVLQRLVAESVSIRDLRSIFEALVEWAPREKDPVMLAEYARLALRRHIVGRQRHGQPWV  580
             D+LQRLV E++SIRDLR+IFE+L+ W+++EKD V+L EY R++LRRHI+GR   G   +
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  581  KAWLIGSHIEQMMRESIRQTSAGSYSALSPQENQAILAEIHAALERSGGANTAIVTAIDI  640
              WLIGS++E+ +RESIRQTS+GSY  ++P+  + I+  +   +  +   N  ++TA+DI
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVV--TPENNGVLLTALDI  635

Query  641  RRFIRKLIERELFTTPVLSFQELDDEAELKVLGHIE  676
            RR+++KLIE+ + +TPVLSFQE++++ ELKVLG ++
Sbjct  636  RRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

19) ssaV in NC_012751


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  446 bits (1680),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 313/646 (49%), Positives = 492/646 (77%), Gaps = 13/646 (2%)

Query  35   ILPLPTELIDVLIAVNLGLSAILLMISIYIRDPLEFSVFPSlllittlyrlaltISTSRL  94
            I+PLPT ++D++IA+N++ + +LLM+SIYI+ PL++SVFP++LLITTL RL+L++ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  95   VLLQHDAGEIVEAFGQFVVGGNLTVGLIIFSIITVVQFIVITKGSERVAEVSARFSLDGM  154
            +LL+HDAGEI+ +FG+FVVGGN+ VGLIIF+IIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  155  PGKQMSIDGDLRSGSIDSAEAGRQRERVQKESRLFGAMDGAMKFVKGDaiasiivilvni  214
            PGKQMSIDGD+R+G ID+ EA   R +VQKES+++GAMDGAMKFVKGDAIA+II++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  215  iggisvgvFQHQMSASEALQTYAVLSVGDGLASQIPSLLISITAGIVVTRVPGKERK--S  272
            +GG+ +G+ Q +M+ S+AL  ++VLSVGD+L +QIP+LLI +TAG+VVTRVPG + K  +
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  273  LANELANQVGRQPEALWMAGGILLVFALIPGFPFFVFALLA-SLVASPAFLVYRKKKKLG  331
            LA ++ +QV+ +  ++ +++ ++LVFA+IPGFP  VF +LA  L++ +  L  +KK   G
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  332  QSESMGL-NADGEPQNEMKPGAVPLLLHCAPNLNRSNLKTEIDSLRLRLFEHLGLPVPEV  390
               +++  ++D   ++++ +GA PL ++ +  + R+++  +I+ +R ++FE+ G+P+P +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  VVHINQQLEKNGLSISVYQervlelvlaenellieRPH--AELTVRHQNLSRRMGELYWI  448
            V++ +Q+   N + + +YQE V    +  + + +E  H  + +   H++LS   +ELY  
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFG-AELYKT  446

Query  449  SSDQK--SQAISLKITFFEGDERIIQCLNYVFERHSSEFIGVQETRYLMDAMEKNYAELI  506
             S+++  ++  +L + +   +E+II  L  +   ++ EFIG+QE+RYLMD MEK+Y+EL+
Sbjct  447  DSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQMPVNKISNILQKLVQENISIRDLRTIFGAIVEWAPKEKDNVMLTEYVRIALRRH  566
            KELQRQ+ + KI +ILQ+LV+ENISIRDLRTIF +++ W++KEKD V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  ICQRFSHSKNYLTVFRVGEGLENIIRRSIRQTSAGAYSELNAKKSTLILNKIKKSIENKT  626
            I  R++ +   L V  +G  LEN +R SIRQTS+G+Y ++ + ++  I+  +K+ +    
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DILLLTSIDVRHYLRKMIEHDLFSLPVLSFQEIGDEMPIKVEGMVE  672
            + +LLT++D+R+Y++K+IE  + S PVLSFQE+G+++ +KV G V+
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

20) esaV in NC_013508


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  440 bits (1658),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 299/636 (48%), Positives = 468/636 (74%), Gaps = 15/636 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N++ ++ LLM+++YI+ P+++S FP++LLITTL RL+L++ST+RLILL+HDAGEI+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            NF VGGN+ VGLI+F+IIT+VQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAG+
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA EA+  R+ VQKESQ+YGAMDGAMKFVKGDAIA+II++LVN+ GG+ +G+   +M+ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRR--NLASELTEQILRQRQa  283
            ++A + +++LSVGD+L+AQIPALLI ++AG++VTRVPGEN +  NLA+++ +Q+  + ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  284  lwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQ  343
            + I A ++ +FA +PGFPT +F+ L+  L +I+  L++K     ++A+  ++ D   ++ 
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKK-----SVAGMKGTLDPSSTDI  340

Query  344  EGAPLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQPDSSLGPDQ  403
             G   + +++       ++      + Q +  +R   +E +G+PLP I I+ +++   + 
Sbjct  341  TGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNV  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVD-HRETLPFGGITLQWIAQEQAEGSAAIG  462
            + L+LYQE+V   T+    +   ++  L   +  ++ L+FG+  L     E+ + +   G
Sbjct  400  IELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGA-ELYKTDSENQQLAHLSG  458

Query  463  VNRYQG-NARIAYLV-SLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARV  520
            +  Y + N +I +L+  L L   + EFIG+QEARYLMD ME++Y+ELVKELQRQL ++++
Sbjct  459  LTVYSSENEKIIFLLRKLVLAN-AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  521  ADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGRQRHGQPWV  580
             D+LQRLV E++SIRDLR+IFE+L+ W+++EKD V+L EY R++LRRHI+GR   G   +
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  581  KAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDI  640
              WLIGS++E+ +RES+RQTS+GSY  ++ +  + I+  +   +      N  ++TA+DI
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN--NGVLLTALDI  635

Query  641  RRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIE  676
            RR+++KLIE+ + +T+VLSFQE++++ ELKVLG ++
Sbjct  636  RRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

21) esaV in NC_017309


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  440 bits (1658),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 299/636 (48%), Positives = 468/636 (74%), Gaps = 15/636 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N++ ++ LLM+++YI+ P+++S FP++LLITTL RL+L++ST+RLILL+HDAGEI+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            NF VGGN+ VGLI+F+IIT+VQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAG+
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA EA+  R+ VQKESQ+YGAMDGAMKFVKGDAIA+II++LVN+ GG+ +G+   +M+ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRR--NLASELTEQILRQRQa  283
            ++A + +++LSVGD+L+AQIPALLI ++AG++VTRVPGEN +  NLA+++ +Q+  + ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  284  lwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQ  343
            + I A ++ +FA +PGFPT +F+ L+  L +I+  L++K     ++A+  ++ D   ++ 
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKK-----SVAGMKGTLDPSSTDI  340

Query  344  EGAPLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQPDSSLGPDQ  403
             G   + +++       ++      + Q +  +R   +E +G+PLP I I+ +++   + 
Sbjct  341  TGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNV  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVD-HRETLPFGGITLQWIAQEQAEGSAAIG  462
            + L+LYQE+V   T+    +   ++  L   +  ++ L+FG+  L     E+ + +   G
Sbjct  400  IELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGA-ELYKTDSENQQLAHLSG  458

Query  463  VNRYQG-NARIAYLV-SLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARV  520
            +  Y + N +I +L+  L L   + EFIG+QEARYLMD ME++Y+ELVKELQRQL ++++
Sbjct  459  LTVYSSENEKIIFLLRKLVLAN-AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  521  ADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGRQRHGQPWV  580
             D+LQRLV E++SIRDLR+IFE+L+ W+++EKD V+L EY R++LRRHI+GR   G   +
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  581  KAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDI  640
              WLIGS++E+ +RES+RQTS+GSY  ++ +  + I+  +   +      N  ++TA+DI
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN--NGVLLTALDI  635

Query  641  RRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIE  676
            RR+++KLIE+ + +T+VLSFQE++++ ELKVLG ++
Sbjct  636  RRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

22) SVI_2235 in NC_014012


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  440 bits (1659),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 330/651 (51%), Positives = 501/651 (77%), Gaps = 18/651 (2%)

Query  31   ILPLPTALIDLLIAFNLCLSILLLMIAIYIRDPLEFSVFPSlllittlyrlaltVSTSRL  90
            I+PLPT ++D++IA+N+  ++LLLM++IYI+ PL++SVFP++LLITTL RL+L+VST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  91   ILLQHDAGEIVYTFGKFVVGGNLAVGiiiftiitivqfivitKGSERVAEVSARFSLDAM  150
            ILL+HDAGEI+Y+FG+FVVGGN+ VG+IIFTIITIVQF+VITKG+ERVAEVSARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  151  PGKQMSIDGDMRAGIIDAQEAKRQRTQVQKESQLYGAMDGAMKFVKGDaiasiivilani  210
            PGKQMSIDGDMRAG+IDA EAK  R++VQKESQ+YGAMDGAMKFVKGDAIA+II++L N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  211  iggiavgvMQHGMSASEAVNTYAILSVGDGLISQIPALLISLTAGLIVTRVPGE--KRQN  268
            +GG+ +G+ Q +M+ S+A+  +++LSVGD+L++QIPALLI +TAG++VTRVPGE  K +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  269  LANELVSQMGRQPSSLQMAGIMMFVFAIIPGFPLItfgflgsltfgfsWWLIRKKKIAEE  328
            LA +++ Q++ +  ++ +++++M+VFAIIPGFP  +   + +L +    W ++KK +A  
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFP-TSVFMILALCLLGISWQLKKKSVAGM  329

Query  329  QGSPHFSDTSASGEVDADGNMSPGAIPVMLCLGEDVSITGVKEALQKLRWQLFEELGVPL  388
            +G+ +    ++S ++ ++ N+++GA P+ + +G ++  T++ + ++ +RW++FEE G+PL
Sbjct  330  KGTLD----PSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPL  385

Query  389  PEIQLQVIKNGRKGQFDvllyqevvlqlqIDPEESLLVDQNVTLLS---RVESLNFNGEE  445
            P I ++  +N +   ++++LYQE V +  I   + +  +    L +     + L+F G E
Sbjct  386  PGIVINQ-QNNKDNVIELFLYQESVHKQTI-VKDIIYFEPGHILPPFEFSHDKLSF-GAE  442

Query  446  LHWIKGNVVEQALEQ--GLPVLSKETIPA-YLVGKVIRRYAGEFIGVQETRYLMDAIEVK  502
            L   K +  +Q L +  GL V S E     +L+ K++   A EFIG+QE+RYLMD +E K
Sbjct  443  LY--KTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKK  500

Query  503  YGELVKELQRVLSVGKVADILQRLVDEGIAIRDLRTIFETLVEWVAKEKDVIMLTEYVRI  562
            Y+ELVKELQR L++GK+ DILQRLV+E I+IRDLRTIFETL+ W AKEKDV++L EYVRI
Sbjct  501  YSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRI  560

Query  563  ALRRHIRRKFVSPQGWISVLMVGDGIENLIRESIRQSTAGSYSALDLEQSNLILTAVVQQ  622
            +LRRHI  ++      + V ++G  +EN +RESIRQ+++GSY  +  E+++ I+  + Q 
Sbjct  561  SLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQV  620

Query  623  LPAQQSCVLLTSLDVRRYLRKIVEKELFMTPVLSFQELGDDAEIKVMAHVD  673
            + ++++ VLLT+LD+RRY++K++EK +  TPVLSFQE+G++ E+KV++ V+
Sbjct  621  VTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

23) ETAC_04215 in NC_020796


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  439 bits (1655),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 299/636 (48%), Positives = 467/636 (74%), Gaps = 15/636 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N++ ++ LLM+++YI+ P+++S FP++LLITTL RL+L++ST+RLILL+HDAGEI+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            NF VGGN+ VGLI+F+IIT+VQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAG+
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA EA+  R+ VQKESQ+YGAMDGAMKFVKGDAIA+II++LVN+ GG+ +G+   +M+ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRR--NLASELTEQILRQRQa  283
            ++A + +++LSVGD+L+AQIPALLI ++AG++VTRVPGEN +  NLA+++ +Q+  + ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  284  lwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQ  343
            + I A ++ +FA +PGFPT +F+ L+  L +I+  L++K     ++A+  ++ D   ++ 
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKK-----SVAGMKGTLDPSSTDI  340

Query  344  EGAPLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQPDSGLGPDQ  403
             G   + +++       ++      + Q +  +R   +E +G+PLP I I+ ++    + 
Sbjct  341  TGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNV  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVD-HRETLPFGGITLQWIAQEQAEGSAAIG  462
            + L+LYQE+V   T+    +   ++  L   +  ++ L+FG+  L     E+ + +   G
Sbjct  400  IELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGA-ELYKTDSENQQLAHLSG  458

Query  463  VNRYQG-NARIAYLV-SLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARV  520
            +  Y + N +I +L+  L L   + EFIG+QEARYLMD ME++Y+ELVKELQRQL ++++
Sbjct  459  LTVYSSENEKIIFLLRKLVLAN-AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  521  ADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGRQRHGQPWV  580
             D+LQRLV E++SIRDLR+IFE+L+ W+++EKD V+L EY R++LRRHI+GR   G   +
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  581  KAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDI  640
              WLIGS++E+ +RES+RQTS+GSY  ++ +  + I+  +   +      N  ++TA+DI
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN--NGVLLTALDI  635

Query  641  RRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIE  676
            RR+++KLIE+ + +T+VLSFQE++++ ELKVLG ++
Sbjct  636  RRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

24) escV in NC_005085


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  432 bits (1625),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 317/651 (49%), Positives = 486/651 (75%), Gaps = 17/651 (2%)

Query  33   PLPTGLVDFMIALNLMIAVILLMMSLYIREPLEFSAFPSVLLITTLYRLALTISTTRLIL  92
            PLPT +VD +IA+N+  A++LLM+S+YI+ PL++S FP++LLITTL RL+L++STTRLIL
Sbjct  33   PLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLIL  92

Query  93   LQADAGEIVYTFGSFAVGGNLGVGLivfviitvvqfivitKGSERVAEVSARFSLDAMPG  152
            L+ DAGEI+Y+FG+F VGGN+ VGLI+F IIT+VQF+VITKG+ERVAEVSARFSLD+MPG
Sbjct  93   LHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152

Query  153  KQMSIDGDMRAGVIDANEARRLRGLVQKESQLYGAMDGAMKFVKgdaiagiiiilvnilg  212
            KQMSIDGDMRAGVIDA EA+ LR+ VQKESQ+YGAMDGAMKFVKGDAIAGIII+LVN++G
Sbjct  153  KQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFG  212

Query  213  gTAIGVMMHGMSASAALSTYAILSIGDGLIGQIPALLISITAGTIVTRVPGEQ--RLNLA  270
            G  IG+   +M+ S AL+ +++LS+GD+L++QIPALLI +TAG +VTRVPGE+    NLA
Sbjct  213  GVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLA  272

Query  271  SDLTDQIGKQPQalllaasvllvfalIPGFPAIYFIILAAMvsaaawwvkkrkraarsds  330
            +D+ +Q++ + ++++++A ++LVFA+IPGFP+  F+ILA         +  + +     +
Sbjct  273  GDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILA----LCLLGISWQLKKKSVAG  328

Query  331  tgspssesGADAGGETANMSPGATPLMMRLSPDLIRSSRLPALLDTFRHGKFEQLGIPLP  390
              +    S++D  G+  N+++GA PL + ++ ++ R+  +   ++  R   FE+ GIPLP
Sbjct  329  MKGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTD-IHQQIEVMRWKFFEESGIPLP  386

Query  391  EIQLQKDASLAAGTLQILLYQEPVLTVSLPERLLLADIASPKLPQSE-QTDKLPFGNLSL  449
             I ++++ +     ++++LYQE+V   ++   ++  + ++  LP  E   DKL+FG   L
Sbjct  387  GIVINQQNN-KDNVIELFLYQESVHKQTIVKDIIYFE-PGHILPPFEFSHDKLSFGA-EL  443

Query  450  QWQSPTQKEALSAIG--VQLHQDEDRIVHCLSIIIDRYAAEFVGVQETRFLMDAMESKYA  507
              ++ ++++ L+ ++       ++++I+  L  ++   A EF+G+QE+R+LMD ME KY+
Sbjct  444  -YKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYS  502

Query  508  ELIKEVQRQLPIGRIADVLQRLVAEGVSIRDLRSVFEALIEWAPREKDPVMLLEYVRMGL  567
            EL+KE+QRQL IG+I D+LQRLV E +SIRDLR++FE+LI W+++EKD V+L EYVR++L
Sbjct  503  ELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISL  562

Query  568  RRHIVTRYRAGQPWISGWMIGDTIEGMVREAIRQTSAGSYSALDPEHNQAIMSCIREAVG  627
            RRHI+ RY  G   +  W+IG  +E  +RE+IRQTS+GSY  + PE+ + I+  +++ V 
Sbjct  563  RRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVT  622

Query  628  DAEKRNQVLITAIDVRRFLRKVVEREFFNLHVLSFQEIGEEAELRVVGNID  678
              +  N VL+TA+D+RR+++K++E+ F +  VLSFQE+G++ EL+V+G ++
Sbjct  623  PEN--NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

25) A1122_03810 in NC_017168


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

26) YPA_4017 in NC_008150


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  22   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  81
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  82   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  141
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  142  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  201
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  202  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  259
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  260  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  319
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  320  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  379
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  380  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  435
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  436  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  495
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  496  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  555
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  556  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  615
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  616  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  661
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

27) YPC_0742 in NC_017265


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

28) flhA1 in NC_005810


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  35   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  94
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  95   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  154
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  155  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  214
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  215  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  272
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  273  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  332
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  333  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  392
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  393  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  448
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  449  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  508
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  509  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  568
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  569  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  628
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  629  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  674
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

29) YPO0266 in NC_003143


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

30) YPD4_0230 in NC_017154


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

31) YPD8_0235 in NC_017160


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

32) y0525 in NC_004088


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  35   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  94
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  95   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  154
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  155  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  214
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  215  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  272
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  273  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  332
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  333  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  392
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  393  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  448
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  449  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  508
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  509  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  568
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  569  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  628
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  629  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  674
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

33) YPDSF_3705 in NC_009381


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1612),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  22   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  81
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  82   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  141
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  142  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  201
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  202  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  259
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  260  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  319
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  320  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  379
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  380  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  435
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  436  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  495
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  496  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  555
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  556  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  615
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  616  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  661
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

34) YPZ3_0228 in NC_014029


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  428 bits (1613),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilini  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L +K+   + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL-KKKSVAGM  329

Query  331  DGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
             G  + +S +  +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  330  KGTLDPSSTDITGN-QNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

35) YpsIP31758_3819 in NC_009708


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  426 bits (1605),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L  K++ ++ 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  DgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
               + + +  + +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERRSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   R+  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

36) YPK_3907 in NC_010465


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  426 bits (1605),  Expect = 1e-120, Method: Compositional matrix adjust.
 Identities = 315/646 (49%), Positives = 485/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L  K++ ++ 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  DgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
               + + +  + +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQVLGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++  +GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERRSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   R+  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

37) YPTB0322 in NC_006155


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  426 bits (1603),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 314/646 (49%), Positives = 486/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L  K++ ++ 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  DgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
               + + +  + +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQALGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++ ++GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

38) YPTS_0346 in NC_010634


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  426 bits (1603),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 314/646 (49%), Positives = 486/646 (76%), Gaps = 11/646 (1%)

Query  33   ILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT +VD++IAIN++ +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VG+IIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAG ID+VEAK LR +VQKES+++GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISITAGIIVTRVPGSNK--QS  270
            +GG+ IG+ Q  M+  +A+  ++VLS+GD+L AQIP+LLI +TAG++VTRVPG N   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaavaapaFLLYRKNRRISQ  330
            LA ++  QV+ +  ++ ++A ++ VFA++PGFP  +F+ LA  + + +  L  K++ ++ 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  DgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEV  390
               + + +  + +  Q +T+GA PL ++ ++ + + ++ ++I+ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  391  EIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTR----PCSSLVTNNQALGAKMGSFD  446
             I  +    +N + + +YQE V    +  D + +      P   +  ++ ++GA +   D
Sbjct  389  VIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  447  WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV  506
              + +Q  +   L + Y   +++II  L ++    + EFIG+QE+RYLMD ME +Y+ELV
Sbjct  448  S-ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELV  505

Query  507  KELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRH  566
            KELQRQ+ +GK+ +ILQRLVEENISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRRH
Sbjct  506  KELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRH  565

Query  567  LCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQ  626
            +  R++   T + V  +G  +E+ +R+SIRQTSSG+Y  +   ++  I+  +K+  + ++
Sbjct  566  ILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPEN  625

Query  627  DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  672
            ++VLLT+LD+RR+++K+IE+ +   PVLS QE+G++++LKV GT++
Sbjct  626  NGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

39) HCH_05101 in NC_007645


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  418 bits (1573),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 297/661 (45%), Positives = 490/661 (75%), Gaps = 24/661 (3%)

Query  31   ILPMPTMLVDVMIAINMGVSVILLMLALYIKSPLDFSVFPSMLLITTMFRLALSITTTRL  90
            I+P+PT++VD++IAIN++ +++LLML++YIKSPLD+SVFP++LLITT+ RL+LS++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  91   ILLQADAGQIVYtfgnfvvggnlvvggvifliltivQFLVITKGSERVAEVSARFSLDSM  150
            ILL+ DAG+I+Y+FGNFVVGGN+VVG +IF I+TIVQF+VITKG+ERVAEVSARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  151  PGKQMSIDGDMRAGVIDMEEARVRRAKVEKESQLYGSMDGAMKFVKGDAIAGLIITAVNI  210
            PGKQMSIDGDMRAGVID  EA+  R+KV+KESQ+YG+MDGAMKFVKGDAIAG+II  VN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  211  LGGILVGVTQNGLSAGDAAAIYSVLTIGDGLVAQIPALFISITAGFIVTRVSTDES--EN  268
            +GG+L+G+ Q +++ ++A +++SVL++GD+LVAQIPAL+I +TAG +VTRV+ ++   +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  269  LGRDIGGQIGAQPKalfiggalllgfaMIPGFPTMVFLVLAGLICSIGFIMSRKARHADT  328
            L+ DI  Q++++ +++ I++ L+L FA+IPGFPT VF++LA  +C +G  +S++ +    
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILA--LCLLG--ISWQLKK---  323

Query  329  DDDDIPAMAAAGQTRTPSKTPEKDDFSPTVPLLLDVAASCQQMLKPSELNAELYRVRRAL  388
                +++M ++ +  +   T +++  S + PL ++++++    +  ++++ ++  +R+ +
Sbjct  324  --KSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGG----IYRTDIHQQIEVMRWKF  377

Query  389  YLDLGVPFPGIHLRFNESMKDGEYTILMHEVPVAQGRLPADKVVVLQDQEQLDILGIPHQ  448
            + + G+P+PGI +  +++ KD    +++ + +V +  +  D ++ ++  + L  + ++H+
Sbjct  378  FEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKD-IIYFEPGHILPPFEFSHD  435

Query  449  QGELAMSANPYWVEKSHAPAMENAGIE-YLDAPRLLIYHLSFILKRYASEFIGLQECRYL  507
            +  L+ +A+ Y  +  +    + +G+  Y      +I+ L  ++   A EFIG+QE RYL
Sbjct  436  K--LSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  508  LDQMEGQYGDLVKEVQRVVPIQRIAEILQRLVSEDISIRNLRAIMEALVEWGQKEKDTVL  567
            +D ME +Y++LVKE+QR + I +I +ILQRLV E+ISIR+LR+I E+L+ W+ KEKD VL
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  568  LTEYVRKSLSRYISYKFCNGQNVLPAYMLDQDLEESIRGGIRQTSSGAYLALDPDTTQNF  627
            L EYVR SL R I  ++  G  +L   +++ +LE+ +R +IRQTSSG+YL + P+ T+++
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  628  INELHREVGDLDALQHKPVLLVSMDIRRYVRKMIERDFFELCVLSYQELTQDITVQPISR  687
            I  L + V      +++ VLL ++DIRRY++K+IE+ F    VLS+QE+ ++I ++ ++ 
Sbjct  614  ILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGT  669

Query  688  I  688
            +
Sbjct  670  V  670

40) YE105_C0332 in NC_015224


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  412 bits (1549),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 316/654 (49%), Positives = 492/654 (76%), Gaps = 30/654 (4%)

Query  33   ILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT++VD++IA+N+S +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VGLIIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAGVID+ EA  LR +VQKES+ +GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLISITAGIIVTRVPDQDK--QS  270
            +GG+ IG+ Q +M+  +A+T ++VLSVGD+L AQIP+LLI +TAG++VTRVP+++   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaalvaTPAFLLYRKKKPSAG  330
            LA D+  QV+ +  +++++A ++ VFA++PGFP  +F++LA  +   +  L  KKK+ AG
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  ASGRGDKLPSPASA---MTPGAVPLMLYCAPNLHYPHLGRDLDGLRWRWFEHLGVPLPEV  387
              G  D  ++  ++   +T+GA PL +  +  +   ++ ++++ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  388  VVRSDPSLAENELSIRVYQEQVLKLTLPFDDVLLLQPSTSLAT---RSQVLGMKMGSFEW  444
            V+  + +  +N + + +YQE V K T+   D++ ++P+  L+      + L+     +  
Sbjct  389  VINQQNN-KDNVIELFLYQESVHKQTIV-KDIIYFEPGHILPPFEFSHDKLSFGAELYK-  445

Query  445  LPAEQAHHASTLG--IPYAQGHQCIIHCLTRVLERHTAEFIGVQETRYLMDAMEARYGEL  502
                + ++ + L+    Y+  ++ II  L +++  ++ EFIG+QE+RYLMD ME +Y+EL
Sbjct  446  -TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSEL  504

Query  503  VKELQRQMPVGKVAETLQRLVEEDISIRDLRTIFGALVAWAPKEKDIVMLTEYVRIALRR  562
            VKELQRQ+ +GK+ + LQRLVEE+ISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRR
Sbjct  505  VKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRR  564

Query  563  HVCSRFSKN----KVWLPVLRLGEGAETLIRESIRQTSAGTYSALENKHSR---LLLDKI  615
            H+ +R++       VWL    +G   E  +RESIRQTS+G+Y  +   ++    LLL ++
Sbjct  565  HILGRYGVGGTMLHVWL----IGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQV  620

Query  616  TGAFAENTDAVLLTSIDVRRFLRKIVERDIFALPVLSWQELGDEMNIKVVGTIE  669
              +   + ++VLLT++D+RR+++K++E+ + + PVLS QE+G+++++KV+GT++
Sbjct  621  VTP---ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

41) Y11_35391 in NC_017564


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  410 bits (1542),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 315/654 (49%), Positives = 492/654 (76%), Gaps = 30/654 (4%)

Query  33   ILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPSlllittlyrlaltISTTRL  92
            I+PLPT++VD++IA+N+S +++LLM+SIY++ PL++SVFP++LLITTL RL+L++STTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   VLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivitKGSERVAEVSARFSLDGM  152
            +LL+HDAGEI+ +FG+FVVGGN+ VGLIIFTIIT+VQF+VITKG+ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGAMKFVKGDAiagiivilvni  212
            PGKQMSIDGDMRAGVID+ EA  LR +VQKES+ +GAMDGAMKFVKGDAIAGII++LVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  iggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLISITAGIIVTRVPDQDK--QS  270
            +GG+ IG+ Q +M+  +A+T ++VLSVGD+L AQIP+LLI +TAG++VTRVP+++   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaalvaTPAFLLYRKKKPSAG  330
            LA D+  QV+ +  +++++A ++ VFA++PGFP  +F++LA  +   +  L  KKK+ AG
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL--KKKSVAG  328

Query  331  ASGRGDKLPSPASA---MTPGAVPLMLYCAPNLHYPHLGRDLDGLRWRWFEHLGVPLPEV  387
              G  D  ++  ++   +T+GA PL +  +  +   ++ ++++ +RW+ FE+ G+PLP +
Sbjct  329  MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI  388

Query  388  VVRSDPSLAENELSIRVYQEQVLKLTLPFDDVLLLQPSTSLAT---RSQVLGMKMGSFEW  444
            V+  + +  +N + + +YQE V K T+   D++ ++P+  L+      + L+     +  
Sbjct  389  VINQQNN-KDNVIELFLYQESVHKQTIV-KDIIYFEPGHILPPFEFSHDKLSFGAELYK-  445

Query  445  LPAEQAHHASTLG--IPYAQGHQCIIHCLTRVLERHTAEFIGVQETRYLMDAMEARYGEL  502
                + ++ + L+    Y+  ++ II  L +++  ++ EFIG+QE+RYLMD ME +Y+EL
Sbjct  446  -TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSEL  504

Query  503  VKELQRQMPVGKVAETLQRLVEEDISIRDLRTIFGALVAWAPKEKDIVMLTEYVRIALRR  562
            VKELQRQ+ +GK+ + LQRLVEE+ISIRDLRTIF +L+ W++KEKD+V+L EYVRI+LRR
Sbjct  505  VKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRR  564

Query  563  HVCSRFSKN----KVWLPVLRLGEGAETLIHESIRQTSAGTYSALENKHSR---LLLDKI  615
            H+ +R++       VWL    +G   E  ++ESIRQTS+G+Y  +   ++    LLL ++
Sbjct  565  HILGRYGVGGTMLHVWL----IGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQV  620

Query  616  TGAFAENTDAVLLTSIDVRRFLRKIVERDIFALPVLSWQELGDEMNIKVVGTIE  669
              +   + ++VLLT++D+RR+++K++E+ + + PVLS QE+G+++++KV+GT++
Sbjct  621  VTP---ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

42) SG1300 in NC_007712


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  393 bits (1477),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 314/647 (49%), Positives = 482/647 (75%), Gaps = 26/647 (4%)

Query  43   TFVVDILIAINITFSVILLLIAIYINDPLDLSVFPSlllittlyrlsltisttrlvllQH  102
            T+VVD++IAINI+ +++LL+++IYI+ PLDLSVFP++LLITTL RLSL++STTRL+LL+H
Sbjct  36   TIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHH  95

Query  103  NAGSIVDAFGRFVVGGNLTVGLviffiitivqfivitKGTERVAEVSARFSLDGMPGKQM  162
            +AG I+ +FG FVVGGN+ VGL+IF IITIVQF+VITKG+ERVAEVSARFSLDGMPGKQM
Sbjct  96   DAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQM  155

Query  163  SIDGDLRAGVIDavqarqqrqlvqqESRFLGAMDGAMKFVKGDAiagiivvlvniiggii  222
            SIDGD+RAGVIDAV+A+  R  VQ+ES+F GAMDGAMKFVKGDAIAGII+VLVN++GG++
Sbjct  156  SIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVL  215

Query  223  igivqggmsigQAMQTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGE--KRQNLAGEV  280
            IG+ Q +M+++QA+  +SVLS+GD+L +QIP+LLI ++AG++VTRVPGE  K +NLAG++
Sbjct  216  IGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDI  275

Query  281  STQLGKQPQALMLTAVILLLFALIPGFPFIDffllallsalPC--GLIWHRLRRA-----  333
              Q++ + +++M++AV++L+FA+IPGFP        ++    C  G+ W+  +++     
Sbjct  276  IHQVSTNNRPFMISAVLMLVFAIIPGFP-----TSVFMILALCLLGISWQLKKKSVAGMK  330

Query  334  SGVGPAAQTESTDDVMRPGACPLMLRISPSLNTASLTQEIDALRWSLFESYGVPLPEITV  393
            + ++P++   + ++ + +GA PL + I+ ++  + + Q+I+ +RW +FE  G+PLP I V
Sbjct  331  GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGI-V  389

Query  394  MVEPAQQAPAMTLLLYQEPVFSQVLPDKGFCLAFGVAD-----DLGGERVTLPDGMGQIT  448
            + +  ++   + L+LYQE+V  Q +    +   F  ++     +++ +++++   + +  
Sbjct  390  INQQNNKDNVIELFLYQESVHKQTIVKDIIY--FEPGHILPPFEFSHDKLSFGAELYKTD  447

Query  449  WLPAERAALARDRGLTVIA-QKNCLSALLRRVLVRYMAEFIGVQEARYLMDAMEAHYAEL  507
               +E   LA+  GLTV + +++ +  LLR++++    EFIG+QEARYLMD ME  Y+EL
Sbjct  448  ---SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSEL  504

Query  508  VKELQRQLPISKITETLQRLVAEGVSIRDLRLIFGTLIEWAPREKDVLMLTEYVRIALRR  567
            VKELQRQL I+KI + LQRLV E +SIRDLR IF TLI W+++EKDV++L EYVRI+LRR
Sbjct  505  VKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRR  564

Query  568  HLLQRLKPLGDPLPVVRIGEGIENLIRESIRQTAVGTYAALSPAQNQRILTLIAEALAPL  627
            H+L R    G  L V  IG  +EN +RESIRQT+ G+Y  ++P + ++I+ L+ + ++P 
Sbjct  565  HILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPE  624

Query  628  GEVCVVTSVDARRFLRRLIETLRHDIAVMSWQELGAECAIQVLATLD  674
             +  ++T++D RR++++LIE      +V+S QE+G +  ++VL+T++
Sbjct  625  NNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

43) HCH_03273 in NC_007645


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  383 bits (1439),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 301/667 (46%), Positives = 481/667 (73%), Gaps = 32/667 (4%)

Query  33   ILPLPTVLVDILIgvnmglavvllmvgvYLRSPLEFVAFPSVllittlfrlslsitttrl  92
            I+PLPT++VD++I++N++ A++LLM+++Y++SPL++  FP++LLITTL RLSLS++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  93   illQADAGSIIEAfggfvvggnlvvglvifliitvvQFLVITKGSERVAEVSARFSLDAM  152
            ILL+ DAG II +FG FVVGGN+VVGL+IF IIT+VQF+VITKG+ERVAEVSARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  153  PGKQMSIDGDMRAGVIDVDEARHRRSQVQKESQLYGSMDGAMKFVKGDAIAGLIIIAVNI  212
            PGKQMSIDGDMRAGVID  EA+  RS+VQKESQ+YG+MDGAMKFVKGDAIAG+II+ VN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  213  LGGIAIGTLQNGMTSGEALELYALLTIGDGLVAQIPALFIAITAGVIVTRVTTDES--EN  270
            +GG+ IG  Q +M  ++AL L+++L++GD+LVAQIPAL+I +TAGV+VTRV  ++   +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  271  LGADIANQIVSKPQAILIGGGLLFTFALIPGFPTLTFIVLALTLTGIGVFTLRQSKNASA  330
            L++DI +Q+ ++ ++++I++ L++ FA+IPGFPT  F++LAL L GI+   L+  K++ A
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGIS-WQLK--KKSVA  327

Query  331  DKHPPLSAMAAAGQPPSKAQLNEAEEFTFTVPLLVDIAADAEDALDPNALNEEILKIRRS  390
            +    L   +++ +  ++ ++  + E     PL ++I++    ++    ++++I  +R+ 
Sbjct  328  GMKGTLD--PSSTDITGNQNITSGAE-----PLSINIGG----GIYRTDIHQQIEVMRWK  376

Query  391  LYLDLGVPFPGIHLRINHGLSDGRYKIHL-QETPIAEGFIKPRQLLVRDQKEQLDLLAIE  449
            ++ + G+P+PGI +  ++   D    + L QE+   + ++K  +++  +  + L  + + 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVK--DIIYFEPGHILPPFEFS  433

Query  450  HNS---EVELLPDAPAYWVEQRHQTSLDKMEVAYLTPPRVLSYHLSIILKKYAQEFIGIQ  506
            H+      EL    +    E+++ + L  + V Y +    + + L  ++   A+EFIGIQ
Sbjct  434  HDKLSFGAELYKTDS----ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGIQ  488

Query  507  ETRFLLEKMEGRYGELVKEVQRLLPIQKITEILQRLVSEDISIRNLRSILEALAEWAQKE  566
            E+R+L++ ME +Y+ELVKE+QR L I KI +ILQRLV E+ISIR+LR+I+E+L  W+ KE
Sbjct  489  EARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKE  548

Query  567  KETVLLTEYVRNSLRRYISYKYSNGQNILPAYMLDQSLEDAIRGGVRQTSSGAYLALEPD  626
            K+ VLL EYVR SLRR I  +Y+ G  +L   +++  LE+ +R ++RQTSSG+YL + P+
Sbjct  549  KDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPE  608

Query  627  TTRKIVEITRRTVGDLNPGAQKVVVITSMDVRRYLRKLLERDMRQLPILSYQDLTPEITI  686
             T +I+ + ++ V   N G    V++T++D+RRY++KL+E+     P+LS+Q++  +I +
Sbjct  609  RTEQIILLLKQVVTPENNG----VLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIEL  664

Query  687  QPLGRIA  693
            + LG + 
Sbjct  665  KVLGTVN  671

44) lcrD in NC_015717


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  377 bits (1416),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 274/661 (42%), Positives = 458/661 (70%), Gaps = 33/661 (4%)

Query  40   DMLQALNLTISAILLMVAVYIKSPLAFVSFPsllllttlfrlslGIASTRLILLEANAGD  99
            DM+ A+N++ + +LLM+++YIKSPL +  FP++LL+TTL RLSL++++TRLILL+ +AG+
Sbjct  40   DMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGE  99

Query  100  IITTFGNFVVAGNLVVGAVIFLIITIVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDG  159
            II +FGNFVV+GN+VVG +IF IITIVQF+VITKG+ERVAEV+ARFSLD+MPGKQMSIDG
Sbjct  100  IIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDG  159

Query  160  DMRAGTIDMNEARRRRGMVEKESQLYGAMDGAMKFVKGDaiagligiavnllggiaigag  219
            DMRAG ID  EA+  R+ V+KESQ+YGAMDGAMKFVKGDAIAG+I + VNL+GG+ IG  
Sbjct  160  DMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMW  219

Query  220  qlgMSVSDAVNTYSILTIGDGLVGQIPGLFTSITAGFIVTRVSSE-EAGTNLGDEIGGEV  278
            Q++M+ S+A+  +S+L++GD+LV+QIP+L+  +TAG +VTRV++E +   NL+++I  +V
Sbjct  220  QFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQV  279

Query  279  TAQPKALMVASSILVIFAVIPGFPTTIFLALAVLSGGGGYMLHRQATMPKQDGDPFSANL  338
            +++ +++M+++ ++++FA+IPGFPT++F+ LA+       +L     + K+      + L
Sbjct  280  STNNRPFMISAVLMLVFAIIPGFPTSVFMILAL------CLLGISWQLKKKSVAGMKGTL  333

Query  339  -PAASASGGTPTVRRAGNDADDFSLTVPVMVDVGTDVQTLIRPDALNDTLAQVRRALYYD  397
             P+++   G   +  +++         P+ +++G ++    R D +++ +  +R+ ++ +
Sbjct  334  DPSSTDITGNQNITSGAE---------PLSINIGGGI---YRTD-IHQQIEVMRWKFFEE  380

Query  398  LGVPFPGINLRLNDRYNGGRYVILLNEVPCGEGHMRSGFLLARDSVENLSLLGIPNETDK  457
             G+P+PGI +  ++  +    ++L +E    +  ++  + +  + +  L+ + ++++   
Sbjct  381  SGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHI--LPPFEFSHDK--  436

Query  458  PFLPLIETIWVAQEHRPALE--AGSVSFMEPAQLLSYHIGHVLRRYAEEFIGIQETRFLL  515
              L++   +  ++ +   L   +G   +    + + + +  ++   A EFIGIQE+R+L+
Sbjct  437  --LSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLM  494

Query  516  SRMEERFPELVKEVQRIVPLQRIAEILQRLVSEGVSVRNMRAILTALIDWGQKEKDVVLL  575
              ME +++ELVKE+QR + + +I +ILQRLV E +S+R++R+I+ +LI W+ KEKDVVLL
Sbjct  495  DIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLL  554

Query  576  TEHIRGALKRQICYRHSSGLNILPAYVVTPELEDTVRNAVRQTSSGSYLALDPRTTRQII  635
             E +R +L+R+I  R + G  +L   ++ +ELE+ +R+++RQTSSGSYL + P  T QII
Sbjct  555  CEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQII  614

Query  636  EKvqgalggvgqqaRKPVLLTAMDIRRYVKKIVEGDCPDLPVLSYQELTPEITVQPLARV  695
                  L  V     + VLLTA+DIRRY+KK++E   P  PVLS+QE+  +I ++ L+ V
Sbjct  615  ----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTV  670

Query  696  S  696
            +
Sbjct  671  N  671

45) VEA_003372 in NC_013456


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  372 bits (1400),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 322/708 (46%), Positives = 509/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAglviivvnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVS--HEDSSDLGSDIGGQVIAQPRALLIGGVLLVLFALIP  298
            LV+QIPAL+I +TAG++VTRV+  ++  ++L++DI  QV ++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKITFLVLATVVGGGGFFLFYQQKKQAASDTTDLSSFVSQgagspaakpskpTPSRNS  358
            GFP   F++LA  + G +     Q KK++ ++  +                   T   +S
Sbjct  301  GFPTSVFMILALCLLGIS----WQLKKKSVAGMKG-------------------TLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDASLQESLEAVALNEELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  EGMQNGEYLIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLPGISSIWVAQ  478
            +  +N   L+  QE +V +  IVKD +    G+    +L  P+E  +D L+  + +  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPGH----ILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SYEQKLT--TSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  536
            S +Q+L+  ++   + + +  + + L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRM  656
             +Y+ G  ML   L++  LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ +      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

46) M892_04485 in NC_022269


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  370 bits (1389),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 322/708 (46%), Positives = 503/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
              PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG+II++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVSNEDS--SDLGSDIGGQVTAQPRALLVGGVLLILFALIP  298
            LV+QIPAL+I +TAG++VTRV+ E+   ++L++DI  QV+++ R++++++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPTPSRNS  358
            GFP   F+ILA  + G +     Q KK+S                       K T   +S
Sbjct  301  GFPTSVFMILALCLLGIS----WQLKKKS-------------------VAGMKGTLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++    ++    +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGG----GIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  EGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLPGITSIWVDQ  478
            +   N   L+  QE +V +  I  + +    G+    +L  P+E  +D L+  + +   +
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPGH----ILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SHHEKLQN--SHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSELVKE  536
            S++++L +  +   + + +  + + L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRM  656
             +Y+ G  ML   L++  LE+ +R++IRQTS+GSYL + P  T+Q++  +KQ +      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

47) VIBHAR_01736 in NC_009783


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  370 bits (1389),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 322/708 (46%), Positives = 503/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
              PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG+II++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVSNEDS--SDLGSDIGGQVTAQPRALLVGGVLLILFALIP  298
            LV+QIPAL+I +TAG++VTRV+ E+   ++L++DI  QV+++ R++++++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPTPSRNS  358
            GFP   F+ILA  + G +     Q KK+S                       K T   +S
Sbjct  301  GFPTSVFMILALCLLGIS----WQLKKKS-------------------VAGMKGTLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++    ++    +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGG----GIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  EGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLPGITSIWVDQ  478
            +   N   L+  QE +V +  I  + +    G+    +L  P+E  +D L+  + +   +
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPGH----ILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SHHEKLQN--SHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSELVKE  536
            S++++L +  +   + + +  + + L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRM  656
             +Y+ G  ML   L++  LE+ +R++IRQTS+GSYL + P  T+Q++  +KQ +      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

48) invA in NC_021174


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  367 bits (1380),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 275/675 (41%), Positives = 466/675 (70%), Gaps = 48/675 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPSILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP+ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivTIAQFIVITKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TI QF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVSGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV+G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlavtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   + ++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REGGLVGKVagalsgggatqsaaaaVDDVDIDKLIPETVPLMLMVPEAAQPMFERDGVIG  385
              G L                 +++ D  + +++ + + PL + +  +     + +  I 
Sbjct  329  MKGTL----------------DPSSTDITGNQNITSGAEPLSINIGGGIYRT-DIHQQIE  371

Query  386  AFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVIGS  439
              R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ +
Sbjct  372  VMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP  429

Query  440  -TLALEGLPVDVVTLPDGAGGDAWWVPDSQTGALAKIDVLTRPAIDDLYGQFL--AVMLS  496
              ++ + L+           G      DS+   LA +  LT  + ++    FL   ++L+
Sbjct  430  FEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLA  479

Query  497  NVSEFFGVQEAKRLLDDMDRKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLILE  556
            N  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+E
Sbjct  480  NAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFE  539

Query  557  SLAQWGPKEKDSILLVEHVRTALARYISNRFAAGGK-LRALVLSAEFEDAVGQGVRQTSG  615
            +L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++E+E+ + +++RQTS+
Sbjct  540  TLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSS  599

Query  616  GAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLSF  675
            G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLSF
Sbjct  600  GSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLSF  655

Query  676  GEVADSVAIDVLKTV  690
             EV++++ + VL TV
Sbjct  656  QEVGNNIELKVLGTV  670

49) ssaV in NC_016857


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  366 bits (1376),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  48   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  107
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  108  ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  167
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  168  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  227
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  228  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  287
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  288  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  345
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  346  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  400
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  401  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  459
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  460  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  518
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  519  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  578
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  579  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  638
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  639  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  696
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

50) CFSAN002050_13465 in NC_021818


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 310/658 (48%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKEMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     E  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSTKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

51) SE451236_12935 in NC_021820


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

52) SeAg_B1759 in NC_011149


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCILLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSTKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

53) SEEB0189_12465 in NC_021844


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

54) SBOV14111 in NC_022241


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

55) SeD_A1929 in NC_011205


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

56) ssaV in NC_011294


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

57) SEEH1578_16305 in NC_021810


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

58) SU5_02030 in NC_017623


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

59) CFSAN002069_01930 in NC_021812


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

60) SeHA_C1547 in NC_011083


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

61) CFSAN001992_04520 in NC_020307


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARALRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A++LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

62) SNSL254_A1525 in NC_011080


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

63) SPAB_01911 in NC_010102


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

64) ssaV in NC_016856


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

65) STMMW_14191 in NC_016854


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

66) ssaV in NC_003197


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

67) ssaV in NC_016810


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

68) STMDT12_C14300 in NC_016860


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

69) STU288_03390 in NC_021151


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

70) ssaV in NC_016863


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

71) CFSAN001921_10075 in NC_021814


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 497/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

72) SSPA1337 in NC_011147


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1372),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 310/658 (48%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitfaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   F +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

73) ssaV in NC_006511


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1372),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 310/658 (48%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitfaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   F +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

74) ssaV in NC_006905


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1372),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

75) SeSA_A1510 in NC_011094


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  365 bits (1372),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

76) SN31241_24840 in NC_021902


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 303/642 (48%), Positives = 483/642 (76%), Gaps = 10/642 (1%)

Query  15   LLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllittlyrlsltistsrl  74
            ++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LLITTL RLSL++ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  75   vllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIERVAEVSARFSLDGM  134
            +LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  135  PGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvni  194
            PGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKFVKGD+IAGII+VLVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  195  iggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGE--KRQN  252
            +GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++AG++VTRVPGE  K +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  253  LATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpiiliRRK-----K  307
            LA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L      +++K     K
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKSVAGMK  330

Query  308  SVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNI  367
            + + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MRW +FE++G+PLP + I
Sbjct  331  GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVI  390

Query  368  EVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DSQTLPNGMGQICWLTKD  426
            +   +  + + ++LYQE+V   +I  +  Y+  G   +      + L+ G +++     +
Sbjct  391  NQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFG-AELYKTDSE  449

Query  427  MAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ  485
              + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYLM+ MEK+YSELVKELQ
Sbjct  450  NQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQ  509

Query  486  RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrrhilrr  545
            RQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++L EYVRI+LRRHIL R
Sbjct  510  RQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGR  569

Query  546  lNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFI  605
                G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI+ L+ Q +    +  +
Sbjct  570  YGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVL  629

Query  606  VTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  647
            +T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  630  LTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

77) ssaV in NC_017046


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 303/642 (48%), Positives = 483/642 (76%), Gaps = 10/642 (1%)

Query  15   LLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllittlyrlsltistsrl  74
            ++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LLITTL RLSL++ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  75   vllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIERVAEVSARFSLDGM  134
            +LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  135  PGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvni  194
            PGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKFVKGD+IAGII+VLVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  195  iggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGE--KRQN  252
            +GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++AG++VTRVPGE  K +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  253  LATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpiiliRRK-----K  307
            LA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L      +++K     K
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKSVAGMK  330

Query  308  SVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNI  367
            + + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MRW +FE++G+PLP + I
Sbjct  331  GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVI  390

Query  368  EVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DSQTLPNGMGQICWLTKD  426
            +   +  + + ++LYQE+V   +I  +  Y+  G   +      + L+ G +++     +
Sbjct  391  NQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFG-AELYKTDSE  449

Query  427  MAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ  485
              + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYLM+ MEK+YSELVKELQ
Sbjct  450  NQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQ  509

Query  486  RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrrhilrr  545
            RQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++L EYVRI+LRRHIL R
Sbjct  510  RQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGR  569

Query  546  lNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFI  605
                G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI+ L+ Q +    +  +
Sbjct  570  YGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVL  629

Query  606  VTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  647
            +T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  630  LTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

78) ssaV in NC_011274


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT  G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

79) ssaV in NC_022221


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT  G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

80) ssaV in NC_016831


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT  G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

81) I137_05675 in NC_021984


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1369),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 496/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + ++  +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT  G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

82) ssaV in NC_012125


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  364 bits (1367),  Expect = 9e-102, Method: Compositional matrix adjust.
 Identities = 303/642 (48%), Positives = 482/642 (76%), Gaps = 10/642 (1%)

Query  15   LLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllittlyrlsltistsrl  74
            ++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LLITTL RLSL++ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  75   vllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIERVAEVSARFSLDGM  134
            +LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  135  PGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvni  194
            PGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKFVKGD+IAGII+VLVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  195  iggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGE--KRQN  252
            +GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++AG++VTRVPGE  K +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  253  LATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpiiliRRK-----K  307
            LA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L      +++K     K
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKSVAGMK  330

Query  308  SVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNI  367
            + + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MRW +FE++G+PLP + I
Sbjct  331  GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVI  390

Query  368  EVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DSQTLPNGMGQICWLTKD  426
            +   +  + + ++LYQE+V   +I  +  Y+  G   +      + L+ G +++     +
Sbjct  391  NQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFG-AELYKTDSE  449

Query  427  MAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ  485
              + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYLM+ MEK+YSELVKELQ
Sbjct  450  NQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQ  509

Query  486  RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrrhilrr  545
            RQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++L EYVRI+LRRHIL R
Sbjct  510  RQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGR  569

Query  546  lNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFI  605
                G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI+ L+ Q +    +  +
Sbjct  570  YGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVL  629

Query  606  VTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  647
            +T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  630  LTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

83) yscV in NC_016642


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  363 bits (1364),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 277/683 (41%), Positives = 478/683 (70%), Gaps = 50/683 (7%)

Query  21   ILPLPTVLVDTliainlslaaillmaalylKDVVALSAFPsilllttlfrlslsitttrl  80
            I+PLPT++VD +IAIN+S A +LLM ++Y+K  + LS FP+ILL+TTL RLSLS++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  81   illKADAGEIIDTFGNFVVQGNLVVGIVIFLILTIVNFLVITKGSERVAEVSARFSLDAM  140
            ILL  DAGEII +FGNFVV GN+VVG++IF I+TIV+F+VITKG+ERVAEVSARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  141  PGKQMSIDSDMRAGQIELDEAKRRRSKLEKESQLYGSMDGAMKFVKGDAIAGLIITAVNI  200
            PGKQMSID+DMRAG I+  EAK  RSK++KESQ+YG+MDGAMKFVKGDAIAG+II  VN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  201  IGGVIIGTSQHGMSAVDALDRYTILTIGDGLVAQIPALFISITAGFMVTRVSTDDS--SD  258
            +GGV+IG  Q +M+  +AL  +++L++GD+LVAQIPAL+I +TAG +VTRV+ ++   ++
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  259  LGSDIAKQLNGEPKALMIAAAIMVGFALIPGFPSVIFLLLAAIFGSIAYFAMRRTKTQSA  318
            L++DI  Q++ + +++MI+A +M+ FA+IPGFP+ +F++LA  + +I+   +++    + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGIS-WQLKKKSVAGM  329

Query  319  KKDSQQLSAFAPAIAPEGEAQMMPDEDMATEVEAAQDLAITITVPLIVDISSSVRSTLNP  378
            K      +++ P+               +T++ + Q+++ + + PL ++I++++  T   
Sbjct  330  K------GTLDPS---------------STDITGNQNIT-SGAEPLSINIGGGIYRT---  364

Query  379  KKLDREVAKVRKALYFDLGVPFPGIKLRLNESLPEGEYRILVNEVPVARGAARSG--YFI  436
              +++++  +R  ++ + G+P+PGI +  +++  +    +++ + +V + +   +  YF 
Sbjct  365  -DIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNVIELFLYQESVHKQTIVKDIIYF-  421

Query  437  ARETPPNLAMFNIPYEEGDSFLPNTPSFWVSNRHFEQATRAGIQTLTL----TGMLSLHL  492
              E    L+ F+++ +     L+  + +  ++ + +Q ++  +  LT+       + + L
Sbjct  422  --EPGHILPPFEFSHDK----LSFGAELYKTDSENQQLAH--LSGLTVYSSENEKIIFLL  473

Query  493  AHVLKQHAAEFLGIQECMFLLKHMESDFDELVREVNRAVPLISLADVLKRLVREDISIRD  552
              ++  +A EF+GIQE  +L+  ME  + ELV+E++R + +  + D+L+RLV E+ISIRD
Sbjct  474  RKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRD  533

Query  553  MRTILQAIVEWGQKEKDPLMLTEHIRMALSRYITHKYSAGQHIIPAYLIDKDIEDEVRGA  612
            +RTI+++++ W+ KEKD ++L E +R++L R I  +Y+ G  ++   LI+ ++E+E+R +
Sbjct  534  LRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRES  593

Query  613  IRQTSGASYLALSPDTHRQLITVMRSAIGDNLAHNGIAPVILVPMDIRRFFRKVIERDYA  672
            IRQTS++SYL ++P+   Q+I +++  +  +  +NG   V+L ++DIRR+ +K+IE+ ++
Sbjct  594  IRQTSSGSYLNITPERTEQIILLLKQVVTPE--NNG---VLLTALDIRRYMKKLIEKAFP  648

Query  673  DLAVLSFQELAPNANIQPLEKIS  695
              +VLSFQE++ N +++ L  ++
Sbjct  649  STPVLSFQEVGNNIELKVLGTVN  671

84) VPBB_1522 in NC_019955


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  361 bits (1357),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 321/708 (46%), Positives = 505/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVS--HEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIP  298
            LV+QIPAL+I +TAG++VTRV+  ++   +L++DI  QV+++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGS  358
            GFP      + ++++   + +  Q KK++ +                     K T   +S
Sbjct  301  GFPT----SVFMILALCLLGISWQLKKKSVAGM-------------------KGTLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  DGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSSLWVAQ  478
            +   N   L+  QE +V +  I KD +    G    ++L  PFE  +D L+  + L  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPG----HILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SYQEKLT--ASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  536
            S +++L+  ++   + + +  + F L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRM  656
             +Y+ G  ML   L++  LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ V      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

85) M636_13755 in NC_021848


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  361 bits (1357),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 321/708 (46%), Positives = 505/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVS--HEDSADLGSDIGGQVTAQPRALLIGGVLLILFALIP  298
            LV+QIPAL+I +TAG++VTRV+  ++   +L++DI  QV+++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGS  358
            GFP      + ++++   + +  Q KK++ +                     K T   +S
Sbjct  301  GFPT----SVFMILALCLLGISWQLKKKSVAGM-------------------KGTLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  DGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSSLWVAQ  478
            +   N   L+  QE +V +  I KD +    G    ++L  PFE  +D L+  + L  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPG----HILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SYQEKLT--ASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  536
            S +++L+  ++   + + +  + F L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRM  656
             +Y+ G  ML   L++  LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ V      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

86) VP1662 in NC_004603


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  361 bits (1356),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 321/708 (46%), Positives = 505/708 (72%), Gaps = 41/708 (5%)

Query  4    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYI  63
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  64   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  123
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  124  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  183
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  184  ESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDG  243
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  244  LVSQIPALFIAITAGIIVTRVS--HEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIP  301
            LV+QIPAL+I +TAG++VTRV+  ++   +L++DI  QV+++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  302  GFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGS  361
            GFP      + ++++   + +  Q KK++ +                     K T   +S
Sbjct  301  GFPT----SVFMILALCLLGISWQLKKKSVAGM-------------------KGTLDPSS  337

Query  362  KGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  421
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  422  DGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSSLWVAQ  481
            +   N   L+  QE +V +  I KD +    G    ++L  PFE  +D L+  + L  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPG----HILP-PFEFSHDKLSFGAELYKTD  447

Query  482  SYQEKLT--ASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  539
            S +++L+  ++   + + +  + F L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  540  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  599
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  600  YKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRM  659
             +Y+ G  ML   L++  LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ V      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  660  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  707
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

87) BTH_II0830 in NC_007650


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  361 bits (1356),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 274/675 (41%), Positives = 466/675 (70%), Gaps = 48/675 (7%)

Query  41   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPSILLITTLFRLALSISTSRM  100
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP+ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  160
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  220
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  IGGVSVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVSGSG---NN  277
            +GGV +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV+G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  278  LGANIVGELFSNPFvlvvtavlalaigllPGFPLAVFLLIALALGALYVRREWRKPGEPP  337
            L+++I+ ++ +N   ++++AVL L ++++PGFP +VF+++AL L  L + ++ +K + + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  338  REGGLAGKVAGALSgggaakpadadagdvdIDKLIPETVPLMLMVPEAAQPMFEREGVIA  397
              G L    ++  +                 +++ + + PL + +  +     + +  I 
Sbjct  329  MKGTLDPSSTDITGN----------------QNITSGAEPLSINIGGGIYRT-DIHQQIE  371

Query  398  AFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVIGS  451
              R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ +
Sbjct  372  VMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP  429

Query  452  -TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVMLG  508
              ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L+
Sbjct  430  FEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLA  479

Query  509  NVSEFFGVQEAKRLLDDMDRKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLILE  568
            N  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+E
Sbjct  480  NAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFE  539

Query  569  SLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAEFEDAVGKGVRQTSG  627
            +L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++E+E+ +  ++RQTS+
Sbjct  540  TLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSS  599

Query  628  GAYLNLEPATSEQLLDRLALELAHAGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLSF  687
            G+YLN+ P  +EQ++    L L +   ++ + VLL+++++RR++K+LIE  FP   VLSF
Sbjct  600  GSYLNITPERTEQII----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSF  655

Query  688  GEVADSVAIDVLKTI  702
             EV++++ + VL T+
Sbjct  656  QEVGNNIELKVLGTV  670

88) M634_09155 in NC_021847


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  361 bits (1356),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 321/708 (46%), Positives = 505/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVS--HEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIP  298
            LV+QIPAL+I +TAG++VTRV+  ++   +L++DI  QV+++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGS  358
            GFP      + ++++   + +  Q KK++ +                     K T   +S
Sbjct  301  GFPT----SVFMILALCLLGISWQLKKKSVAGM-------------------KGTLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  DGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSSLWVAQ  478
            +   N   L+  QE +V +  I KD +    G    ++L  PFE  +D L+  + L  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPG----HILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SYQEKLT--ASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  536
            S +++L+  ++   + + +  + F L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGHNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRM  656
             +Y+ G  ML   L++  LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ V      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

89) N646_0730 in NC_022349


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 318/708 (45%), Positives = 508/708 (72%), Gaps = 41/708 (5%)

Query  1    MNKLIDILNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYI  60
            M+K++D ++K +   D++LA  ++  V MMI+PLPT +VD++I+ N+S A++LLML+IYI
Sbjct  1    MSKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYI  60

Query  61   TTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvf  120
             +PL++S FP++LLITTL RLSLS++TTRLILL+ DAG+I+Y+FGNFVVGGN+VVG+++F
Sbjct  61   KSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIF  120

Query  121  liitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEK  180
             IITIVQFMVITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGVID  EA+  RS ++K
Sbjct  121  TIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQK  180

Query  181  ESQMYGSMDGAMKFVKGDSIAglviivvnilggvtigvtQKGMSASEALELFAILTVGDG  240
            ESQ YG+MDGAMKFVKGD+IAG++I++VN++GGV IG+ Q +M+ S+AL LF++L+VGD+
Sbjct  181  ESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDA  240

Query  241  LVSQIPALFIAITAGIIVTRVS--HEDSSDLGSDIGGQVIAQPRALLIGGVLLVLFALIP  298
            LV+QIPAL+I +TAG++VTRV+  ++  ++L++DI  QV ++ R+++I++VL+++FA+IP
Sbjct  241  LVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIP  300

Query  299  GFPKITflvlaavvggggfflfYQQKKQAESDSTDLSSFVSQgagspaakpskpTPSRNS  358
            GFP      +  +++   + +  Q KK++ ++  +                   T   +S
Sbjct  301  GFPT----SVFMILALCLLGISWQLKKKSVAGMKG-------------------TLDPSS  337

Query  359  KGKLGEQEEFAMTVPLLIDLDASLQESLEAVALNEELARVRRALYLDLGVPFPGIHLRFN  418
             +  G+Q+  + + PL I++++++  +     +++++  +R+ ++ + G+P+PGI +  +
Sbjct  338  TDITGNQNITSGAEPLSINIGGGIYRT----DIHQQIEVMRWKFFEESGIPLPGIVINQQ  393

Query  419  EGMQNGEYLIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLPGISSIWVAQ  478
            +  +N   L+  QE +V +  IVKD +    G+    +L  P+E  +D L+  + +  ++
Sbjct  394  NNKDNVIELFLYQE-SVHKQTIVKDIIYFEPGH----ILP-PFEFSHDKLSFGAELYKTD  447

Query  479  SYEQKL--VASHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKE  536
            S +Q+L  +++   + + +  + + L  ++   A++FIGIQE+RYL++ ME  YSELVKE
Sbjct  448  SENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKE  507

Query  537  AQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYIC  596
             QR + + K+ +ILQRLV E+ISIR+LR I+E+++ W+ KEKDVV L EY+R SL+R I 
Sbjct  508  LQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHIL  567

Query  597  YKYASGQNMLPAYLLDQNLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRM  656
             +Y+ G  ML   L++ +LE+ +R +IRQTS+GSYL + P  T+Q++  +KQ +      
Sbjct  568  GRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTP----  623

Query  657  PNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVG  704
             N+ VL+ ++D+RRY++KLIE  +   PVLSFQE+ ++I+++ LG V 
Sbjct  624  ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

90) YE105_P0016 in NC_015475


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1345),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 286/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQETFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALDPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRV  702
            ++I+++ LG V
Sbjct  660  NNIELKVLGTV  670

91) Y11_p0841 in NC_017565


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1345),  Expect = 5e-100, Method: Compositional matrix adjust.
 Identities = 286/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQETFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALDPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRV  702
            ++I+++ LG V
Sbjct  660  NNIELKVLGTV  670

92) lcrD in NC_010157


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

93) YPA_CD0028 in NC_008122


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

94) yscV in NC_005813


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

95) yscV in NC_003131


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

96) yscV in NC_017153


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

97) yscV in NC_017157


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

98) YPDSF_3983 in NC_009377


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

99) yscV in NC_014017


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

100) pYV0060 in NC_006153


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

101) YPTS_4279 in NC_010635


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  358 bits (1344),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 285/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQEAFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRI  702
            ++I+++ LG +
Sbjct  660  NNIELKVLGTV  670

102) lcrD in NC_008791


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 286/671 (43%), Positives = 474/671 (71%), Gaps = 61/671 (9%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N++ +++LLM++IYI+SPL++S FP++LL+TTL RL+LSVSTTR+ILL+ DAG+I+Y+FG
Sbjct  46   NISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFG  105

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            NFVVGGN++VG++IF IITIVQF+VITKG+ERVAEVSARFSLD+MPGKQMSIDGDMRAGV
Sbjct  106  NFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGV  165

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            ID  EA+  R+ ++KESQ +G+MDGAMKFVKGDAIAG+II++VN++GGV IG+ Q +++ 
Sbjct  166  IDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPF  225

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS--SDLGSDIGKQVVAQPKA  284
            ++AL L+S+L+VGD++V+Q+PALLI +TAG++VTRV++E+   ++L++DI  QV ++ ++
Sbjct  226  SQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRP  285

Query  285  MliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGA  344
             +I++VL+L+F++IPGFPT  F+ILAL   C   +L+     +  +  ++++ L ++S  
Sbjct  286  FMISAVLMLVFAIIPGFPTSVFMILAL---C---LLGISWQLKKKSVAGMKGTLDPSSTD  339

Query  345  PAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLD  404
             ++  +  +++                PL I++++    ++    +++++  +R+ ++ +
Sbjct  340  ITGNQNITSGAE---------------PLSINIGG----GIYRTDIHQQIEVMRWKFFEE  380

Query  405  LGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELL-GIPYEKG  463
             G+P+PGI +   +   + + +I L              +L +ESV +  ++ +I Y   
Sbjct  381  SGIPLPGIVI---NQQNNKDNVIEL--------------FLYQESVHKQTIVKDIIYFEP  423

Query  464  EHLLP----DQETFWVSVE-YEERLEKSQLE-------FFSHSQVLTWHLSHVLREYAED  511
             H+LP     ++ +  + E Y    E+ QL        + S+++ +   L  ++   A +
Sbjct  424  GHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKE  483

Query  512  FIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVE  571
            FIGIQE+RYL++ ME  Y+EL+KE+QR + + ++ +ILQRLV E+ISIR++R+I+E+++ 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  572  WGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSAVRQTSAGSYL  631
            W+ KEKDVV L EY+R SL+R I  +Y+ G  +L   L++ E+E+ +R ++RQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  632  ALDPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELT  691
             + P  TE ++  +++ +      +++ VL+ ++DIRRY++KLIE  + + PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQVVTP----ENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  692  QQINIQPLGRV  702
            ++I+++ LG V
Sbjct  660  NNIELKVLGTV  670

103) NH44784_014751 in NC_021285


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  356 bits (1336),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 283/672 (43%), Positives = 478/672 (72%), Gaps = 37/672 (5%)

Query  31   ILPLPTTLVDVLIGANMTLSAILLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  90
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  91   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  150
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  151  PGKQMSIDADLRAGTIDMDEARKRRSVVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNL  210
            PGKQMSID+D+RAG ID  EA+  RS V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  211  LGGILIGTMQRGLSAGEAVQVYSILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  269
            +GG+LIG  Q +++ ++A+ ++S+L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  270  VGKDIGAQVLAQPRalliaaaiaigmglipgmpTLTFLALAAVVGTIGFVLLRGTRKVVD  329
            ++ DI  QV ++ R+++I+A + +  ++IPG PT  F+ LA  +  I+  L    +K V 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQL---KKKSVA  327

Query  330  EKTGEITEIPALAADGQKPQARPRADGSAEFAPTLPLMIDVAAALQRSFDADELNEELLK  389
               G      +L + +    +     ++AE     PL I++++++ R+    ++++++  
Sbjct  328  GMKG------TLDPSSTDITGNQNITSGAE-----PLSINIGGGIYRT----DIHQQIEV  372

Query  390  IRRALYFDLGVPFPGIQLRFNDALPADSYNILLSEVPVSQGKLRPGAVLVRDTEQNLQAL  449
            +R+ ++ + G+P+PGI +  ++    +  +++L + +V +  +  + +   +  + L ++
Sbjct  373  MRWKFFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPF  430

Query  450  QVPYETDKRFLPNVPTLWVDAGLAPTLTA-AGIPFLDPHQVLTWHLAFVLKKY----SSD  504
            +  +  DK  L+  + L    +    L+  +G+    +++     + F+L+K     + +
Sbjct  431  E--FSHDK--LSFGAELYKTDSENQQLAHLSGLTVYSSENE---KIIFLLRKLVLANAKE  483

Query  505  FIGIQETRFLLTAMEDRFPDLVKEALRVMPVQKIAEILQRLVSEDISVRNLRAVLEALIE  564
            FIGIQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E+IS+R+LR+++E+LI 
Sbjct  484  FIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIF  543

Query  565  WGQKEKDSVLLTEYVRVSLKRHISYKYSSGQNILPAYLLAPNVEETVRGAIRQTSAGSYL  624
            W+ KEKD VLL EYVR+SL+RHI  +Y+ G  +L   L+++++E+ +R +IRQTS+GSYL
Sbjct  544  WSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYL  603

Query  625  ALDPNASRKLVDNIKRVAGDLTAAAQKPVLLTSMDIRRYLRKMIEQDLYELPVLSYQELT  684
             + P+ + +++  +K+V     ++ ++ VLLT++DIRRY++K+IE+ +   PVLS+QE+ 
Sbjct  604  NITPERTEQIILLLKQV----VTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVG  659

Query  685  QEINVQPLARVD  696
            ++I+++ L+ V+
Sbjct  660  NNIELKVLGTVN  671

104) ssaV in NC_003198


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  354 bits (1331),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 495/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvillliviYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL++ IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLSKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

105) STBHUCCB_13720 in NC_016832


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  354 bits (1331),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 495/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvillliviYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL++ IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLSKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

106) TY21A_06515 in NC_021176


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  354 bits (1331),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 495/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvillliviYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL++ IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLSKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

107) ssaV in NC_004631


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  354 bits (1331),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 309/658 (47%), Positives = 495/658 (76%), Gaps = 10/658 (1%)

Query  22   QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvillliviYLSDPLDLSVFPslll  81
            +D++LA  +++A++MM++PLPT +VD++I+IN+  +++LL++ IY+  PLDLSVFP++LL
Sbjct  15   HDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILL  74

Query  82   ittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKG  141
            ITTL RLSL++ST+RL+LL+H+AG+I+ +FG+FVVGGN+ VGL++FTIITIVQF+VITKG
Sbjct  75   ITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKG  134

Query  142  IERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKF  201
             ERVAEVSARFSLDGMPGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKF
Sbjct  135  AERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKF  194

Query  202  VKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSA  261
            VKGD+IAGII+VLVN++GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++A
Sbjct  195  VKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTA  254

Query  262  GIIVTRVPGE--KRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsall  319
            G++VTRVPGE  K +NLA ++  Q++ + ++++++AV+++++A+IPGFP   + +++  L
Sbjct  255  GVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL  314

Query  320  alpiiliRRK-----KSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMR  374
                  +++K     K+ + +++ +   ++++ +GA PL + +   +  +D+ ++I+ MR
Sbjct  315  LGISWQLKKKSVAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMR  374

Query  375  WFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVG-DS  433
            W +FE++G+PLP + I+   +  + + ++LYQE+V   +I  +  Y+  G   +      
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSH  434

Query  434  QTLPNGMGQICWLSKDMAHKAQGFGLDVFAG-SQRISALLKCVLLRHMGEFIGVQETRYL  492
            + L+ G +++     +  + A+  GL V+++ +++I  LL+ ++L +  EFIG+QE+RYL
Sbjct  435  DKLSFG-AELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYL  493

Query  493  MNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLM  552
            M+ MEK+YSELVKELQRQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++
Sbjct  494  MDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVL  553

Query  553  LTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQI  612
            L EYVRI+LRRHIL R    G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI
Sbjct  554  LCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQI  613

Query  613  LQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670
            + L+ Q +    +  ++T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  614  ILLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

108) mxiA in NC_017319


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  354 bits (1331),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 271/668 (41%), Positives = 466/668 (70%), Gaps = 38/668 (5%)

Query  3    IIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRL  62
            IIPLPT +VD +I++NI  A+L++M S+YI   L +S FP++LLITTL RL+LS+ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  63   ILVDADAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGM  122
            IL++ DAG II +FG+FV+G+++ VG++IF+I+T+VQF+VITKG+ERVAEV+ARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  123  PGKQMSIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFikgdaiagiiiifvnl  182
            PGKQMSID+D++AG+IDA  AK  RS +++ESQ+YG+ DGAMKF+KGDAIAGIII++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  183  iggiSVGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSD---N  239
            +GG+ +GM Q +M++S AL+ +++L++GD+LV+QIPALLI ++AG +VTRV G++D   N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  240  MGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYkkvvekeksl  299
            ++ +I+ Q+  N   +++++ L L ++++PGFP  VF ++A+ L ++            L
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISW---------QL  321

Query  300  sesdssGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIR  359
                 +G  GT+D  +++      I   + I+S + PL + ++   I   D++  IE +R
Sbjct  322  KKKSVAGMKGTLDPSSTD------ITGNQNITSGAEPLSINIGGG-IYRTDIHQQIEVMR  374

Query  360  SQFFIDYGVRLPTILYRTSNEL-KVDDIVLLINEVRADSFN---IYFDKVCITDENGDID  415
             +FF + G+ LP I+    N+  +V ++ L  + V+ +++    IYF+   I      + 
Sbjct  375  WKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHI------LP  428

Query  416  ALGIPVVSTSYNERVISWVDVSYTENLTNIDAKI--KSAQDEFYHQLSQALLNNINEIFG  473
            ++ ++    S+   +      S  ++L+++ +     S ++ +   L + +L N +E++G
Sbjct  429  PFEFSHDKLSFGAELYK--TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIG  486

Query  474  IQETKNMLDQFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAP  533
            IQE++ ++D  E++Y++L+KE+ R++ I +I ++LQRL+ ENIS+R+L+ I E+L +W++
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  534  REKDVITLVEHVRASLSRYICSKIAVSGEI-KVVMLSGYIEDAIRKGIRQTSGGSFLNMD  592
            +EKDV+ L E VR SL R I ++ +V+G +  V ++++ +E+ +R +IRQTS+GS+LN+ 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  593  IEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAY  652
             E +++++      L+++  + +N VLL ++DIRR++K+LI++ F S  V+S+ E+++  
Sbjct  607  PERTEQII----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  653  TINVLKTI  660
             ++VL T+
Sbjct  663  ELKVLGTV  670

109) SARI_01568 in NC_010067


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  353 bits (1325),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 304/642 (48%), Positives = 480/642 (75%), Gaps = 10/642 (1%)

Query  15   LLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllittlyrlsltistsrl  74
            ++PLPT +VD++I+IN+  +++LL+++IY+  PLDLSVFP++LLITTL RLSL++ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  75   vllQHNAGNIVDAFGRfvvggnltvglvvftiitivqfivitKGIERVAEVSARFSLDGM  134
            +LL+H+AG+I+ +FG FVVGGN+ VGL++FTIITIVQF+VITKG ERVAEVSARFSLDGM
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  135  PGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvni  194
            PGKQMSIDGD+RAGVIDA +A+ LR  VQ+ES+F GAMDGAMKFVKGD+IAGII+VLVN+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  195  iggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGE--KRQN  252
            +GG++I++ Q+DM+ S+A+  +SVLS+GD+L +QIP+LLI ++AG++VTRVPGE  K +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  253  LATELSSQIARQPQSLILTAVVLMLLAFIPGfpfiilaffsallalpiiliRRK-----K  307
            LA ++  Q++ + ++++++AV+++++A+IPGFP  ++ +++  L      +++K     K
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKSVAGMK  330

Query  308  AVVSVSGAEAQEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWLVFEDTGVPLPEVNI  367
            + +  S+++   ++++ +GA PL + +   +  +D+ ++I+ MRW  FE++G+PLP + I
Sbjct  331  GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVI  390

Query  368  EVLPEPTEKLTVLLYQEPVFSLSIPTQADYLLIGADASVVG-ESQTLPNGMGQICWLSKD  426
            +   +  + + ++LYQE+V   +I  +  Y+  G   +      + L+ G +++     +
Sbjct  391  NQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFG-AELYKTDSE  449

Query  427  MGNKAQGFGLEVFAG-SQRISALLKCALLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ  485
              + A+  GL V+++ +++I  LL+  +L +  EFIG+QE+RYLM+ MEK+YSELVKELQ
Sbjct  450  NQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQ  509

Query  486  RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrrhilrr  545
            RQL I KI + LQRLV E +SIRDLR IF TLI W+++EKDV++L EYVRI+LRRHIL R
Sbjct  510  RQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGR  569

Query  546  lNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKSQILQLIEQALKRSAKLFI  605
                G  L +  IG  +EN +RESIRQT+ G+Y  +++ +  QI+ L+ Q +    +  +
Sbjct  570  YGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVTPENNGVL  629

Query  606  VTSVDTRRFLRKITEATLFDVPILSWQELGEECFVQVVESID  647
            +T++D RR+++K+ E ++   P+LS QE+G++  ++V+ +++
Sbjct  630  LTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

110) sctV in NC_005861


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  349 bits (1309),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 278/682 (41%), Positives = 472/682 (70%), Gaps = 46/682 (6%)

Query  46   PVNPHVIDYLIAINLSSSIALLMVALYIPSAVHLSIFPSlllittlyrlglNIASTRQIL  105
            P+   V+D +IAIN+S+++ LLM+++YI S+++LS+FP++LLITTL RL+L++++TR IL
Sbjct  33   PLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLIL  92

Query  106  LHANAGEiifqfgnfvvggnfvvggvifliiTLVQFLVITKGAERVAEVAARFTLDAMPG  165
            LH +AGEII+ FGNFVVGGN+VVG +IF IIT+VQF+VITKGAERVAEV+ARF+LD+MPG
Sbjct  93   LHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152

Query  166  KQMSIDADMRAGILDSNQAREKRLAIQRESQLYGAMDGAMKFVKGDAIAGIVITLINVIG  225
            KQMSID+DMRAG++D+ +A+  R  +Q+ESQ+YGAMDGAMKFVKGDAIAGI+I L+N++G
Sbjct  153  KQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFG  212

Query  226  GMIIGMTMNEMEASDAAKTYALLSIGDGLISQIPALLISITAGIVTTRVSG-SEKVENLG  284
            G++IGM   +M  S+A   +++LS+GD+L++QIPALLI +TAG+V TRV+G ++K +NL+
Sbjct  213  GVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLA  272

Query  285  TEISGQILKQPKALMITAAFLMGMSLVPGFPMPPFliaaaalgligyalWSNEQKALLgg  344
             +I  Q+  + +++MI+A +++  +++PGFP + F         +    W   +K     
Sbjct  273  GDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVF---MILALCLLGISWQLKKK-----  324

Query  345  gsvgsmgggTIQSAAGSDSSVETSVRGHKVISGGGVDSYALTLPVVLEVGRGLSIEIQKA  404
                     ++ +  G+  +  T + G++ I++G+        P+ +++G G    I ++
Sbjct  325  ---------SVAGMKGTLDPSSTDITGNQNITSGAE-------PLSINIGGG----IYRT  364

Query  405  NKGTSFIDQMIPKMRQALYADLGVRFPGVHVRTDSPILDKDE-YSIHLNEVPIVRGKVLE  463
            +     I+Q I  MR  ++ + G+ +PG+ +  ++   +KD+   + L + ++ +  ++ 
Sbjct  365  D-----IHQQIEVMRWKFFEESGIPLPGIVINQQN---NKDNVIELFLYQESVHKQTIVK  416

Query  464  NHLLTNESEENLKRYNLPFVSYKNSLGLPSLWVDAKNKELLDKAGIR-YWSSLEVMILHL  522
            + ++  E+ + L  ++  F   K S+G      D+ N++L + +G+  Y S  E +I+ L
Sbjct  417  D-IIYFEPGHILPPFE--FSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLL  473

Query  523  SYFFRHYANEFVGIQEVKSMLEFVEKSFPDLVKEVTRLIPLQKMTDIFKRLIQEQISIKD  582
              +    A+EF+GIQE + +++++EK +++LVKE+ R + + K+ DI++RL++E+ISI+D
Sbjct  474  RKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRD  533

Query  583  LRTILEALGEWAQTEKDTVLLTEYVRSSLKRFISYKYSQGQSVLSVYILDPEIEDMVRGA  642
            LRTI+E+L  W+  EKD VLL EYVR SL+R I  +Y+ G ++L V ++++E+E+ +R +
Sbjct  534  LRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRES  593

Query  643  IKQTSAGSYLALDPDSVQLILQGVRNTVSppppggqppVILTAIDVRRFVRKLIEMEFTD  702
            I+QTS+GSYL + P+  + I+  +++ V+      +  V+LTA+D+RR+++KLIE  F  
Sbjct  594  IRQTSSGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPS  649

Query  703  ISVVSYQEIVPEIRIQPLGRIQ  724
             +V+S+QE+  +I ++ LG ++
Sbjct  650  TPVLSFQEVGNNIELKVLGTVN  671

111) SbBS512_A0181 in NC_010660


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  346 bits (1299),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 266/663 (41%), Positives = 461/663 (70%), Gaps = 38/663 (5%)

Query  34   TYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDA  93
            T +VD +I++NI  A+L++M S+YI   L +S FP++LLITTL RL+LS+ST+RLIL++ 
Sbjct  36   TIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHH  95

Query  94   DAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQM  153
            DAG II +FG+FV+G+++ VG++IF+I+T+VQF+VITKG+ERVAEV+ARFSLDGMPGKQM
Sbjct  96   DAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQM  155

Query  154  SIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFikgdaiagiiiifvnliggiS  213
            SID+D++AG+IDA  AK  RS +++ESQ+YG+ DGAMKF+KGDAIAGIII++VNL+GG+ 
Sbjct  156  SIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVL  215

Query  214  VGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSD---NMGRNI  270
            +GM Q +M++S AL+ +++L++GD+LV+QIPALLI ++AG +VTRV G++D   N++ +I
Sbjct  216  IGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDI  275

Query  271  MSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYkkvvekekslsesds  330
            + Q+  N   +++++ L L ++++PGFP  VF ++A+ L ++            L     
Sbjct  276  IHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISW---------QLKKKSV  326

Query  331  sGYTGTFDIDNSNDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFI  390
            +G  GT+D  +++      I   + I+S + PL + ++   I   D++  IE +R +FF 
Sbjct  327  AGMKGTLDPSSTD------ITGNQNITSGAEPLSINIGGG-IYRTDIHQQIEVMRWKFFE  379

Query  391  DYGVRLPTILYRTSNEL-KVDDIVLLINEVRADSFN---IYFDKVCITDENGDIDALGIP  446
            + G+ LP I+    N+  +V ++ L  + V+ +++    IYF+   I      + ++ ++
Sbjct  380  ESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHI------LPPFEFS  433

Query  447  VVSTSYNERVISWVDVSYTENLTNIDAKI--KSAQDEFYHQLSQALLNNINEIFGIQETK  504
                S+   +      S  ++L+++ +     S ++ +   L + +L N +E++GIQE++
Sbjct  434  HDKLSFGAELYK--TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEAR  491

Query  505  NMLDQFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDV  564
             ++D  E++Y++L+KE+ R++ I +I ++LQRL+ ENIS+R+L+ I E+L +W+++EKDV
Sbjct  492  YLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDV  551

Query  565  ITLVEHVRASLSRYICSKIAVSGEI-KVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSD  623
            + L E VR SL R I ++ +V+G +  V ++++ +E+ +R +IRQTS+GS+LN+  E ++
Sbjct  552  VLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTE  611

Query  624  EVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINVL  683
            +++      L+++  + +N VLL ++DIRR++K+LI++ F S  V+S+ E+++   ++VL
Sbjct  612  QII----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVL  667

Query  684  KTI  686
             T+
Sbjct  668  GTV  670

112) mxiA in NC_004851


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 266/663 (41%), Positives = 461/663 (70%), Gaps = 38/663 (5%)

Query  34   TYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDA  93
            T +VD +I++NI  A+L++M S+YI   L +S FP++LLITTL RL+LS+ST+RLIL++ 
Sbjct  36   TIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHH  95

Query  94   DAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQM  153
            DAG II +FG+FV+G+++ VG++IF+I+T+VQF+VITKG+ERVAEV+ARFSLDGMPGKQM
Sbjct  96   DAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQM  155

Query  154  SIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFikgdaiagiiiifvnliggiS  213
            SID+D++AG+IDA  AK  RS +++ESQ+YG+ DGAMKF+KGDAIAGIII++VNL+GG+ 
Sbjct  156  SIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVL  215

Query  214  VGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSD---NMGRNI  270
            +GM Q +M++S AL+ +++L++GD+LV+QIPALLI ++AG +VTRV G++D   N++ +I
Sbjct  216  IGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDI  275

Query  271  MSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYkkvvekekslsesds  330
            + Q+  N   +++++ L L ++++PGFP  VF ++A+ L ++            L     
Sbjct  276  IHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISW---------QLKKKSV  326

Query  331  sGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIRSQFFI  390
            +G  GT+D  +++      I   + I+S + PL + ++   I   D++  IE +R +FF 
Sbjct  327  AGMKGTLDPSSTD------ITGNQNITSGAEPLSINIGGG-IYRTDIHQQIEVMRWKFFE  379

Query  391  DYGVRLPTILYRTSNEL-KVDDIVLLINEVRADSFN---IYFDKVCITDENGDIDALGIP  446
            + G+ LP I+    N+  +V ++ L  + V+ +++    IYF+   I      + ++ ++
Sbjct  380  ESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHI------LPPFEFS  433

Query  447  VVSTSYNERVISWVDVSYTENLTNIDAKI--KSAQDEFYHQLSQALLNNINEIFGIQETK  504
                S+   +      S  ++L+++ +     S ++ +   L + +L N +E++GIQE++
Sbjct  434  HDKLSFGAELYK--TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEAR  491

Query  505  NMLDQFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDV  564
             ++D  E++Y++L+KE+ R++ I +I ++LQRL+ ENIS+R+L+ I E+L +W+++EKDV
Sbjct  492  YLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDV  551

Query  565  ITLVEHVRASLSRYICSKIAVSGEI-KVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSD  623
            + L E VR SL R I ++ +V+G +  V ++++ +E+ +R +IRQTS+GS+LN+  E ++
Sbjct  552  VLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTE  611

Query  624  EVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINVL  683
            +++      L+++  + +N VLL ++DIRR++K+LI++ F S  V+S+ E+++   ++VL
Sbjct  612  QII----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVL  667

Query  684  KTI  686
             T+
Sbjct  668  GTV  670

113) mxiA in NC_007385


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 266/663 (41%), Positives = 461/663 (70%), Gaps = 38/663 (5%)

Query  36   TYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDA  95
            T +VD +I++NI  A+L++M S+YI   L +S FP++LLITTL RL+LS+ST+RLIL++ 
Sbjct  36   TIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHH  95

Query  96   DAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQM  155
            DAG II +FG+FV+G+++ VG++IF+I+T+VQF+VITKG+ERVAEV+ARFSLDGMPGKQM
Sbjct  96   DAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQM  155

Query  156  SIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFikgdaiagiiiifvnliggiS  215
            SID+D++AG+IDA  AK  RS +++ESQ+YG+ DGAMKF+KGDAIAGIII++VNL+GG+ 
Sbjct  156  SIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVL  215

Query  216  VGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSD---NMGRNI  272
            +GM Q +M++S AL+ +++L++GD+LV+QIPALLI ++AG +VTRV G++D   N++ +I
Sbjct  216  IGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDI  275

Query  273  MSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYkkvvekekslsesds  332
            + Q+  N   +++++ L L ++++PGFP  VF ++A+ L ++            L     
Sbjct  276  IHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISW---------QLKKKSV  326

Query  333  sGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIRSQFFI  392
            +G  GT+D  +++      I   + I+S + PL + ++   I   D++  IE +R +FF 
Sbjct  327  AGMKGTLDPSSTD------ITGNQNITSGAEPLSINIGGG-IYRTDIHQQIEVMRWKFFE  379

Query  393  DYGVRLPTILYRTSNEL-KVDDIVLLINEVRADSFN---IYFDKVCITDENGDIDALGIP  448
            + G+ LP I+    N+  +V ++ L  + V+ +++    IYF+   I      + ++ ++
Sbjct  380  ESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHI------LPPFEFS  433

Query  449  VVSTSYNERVISWVDVSYTENLTNIDAKI--KSAQDEFYHQLSQALLNNINEIFGIQETK  506
                S+   +      S  ++L+++ +     S ++ +   L + +L N +E++GIQE++
Sbjct  434  HDKLSFGAELYK--TDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEAR  491

Query  507  NMLDQFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDV  566
             ++D  E++Y++L+KE+ R++ I +I ++LQRL+ ENIS+R+L+ I E+L +W+++EKDV
Sbjct  492  YLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDV  551

Query  567  ITLVEHVRASLSRYICSKIAVSGEI-KVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSD  625
            + L E VR SL R I ++ +V+G +  V ++++ +E+ +R +IRQTS+GS+LN+  E ++
Sbjct  552  VLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTE  611

Query  626  EVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINVL  685
            +++      L+++  + +N VLL ++DIRR++K+LI++ F S  V+S+ E+++   ++VL
Sbjct  612  QII----LLLKQVVTPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVL  667

Query  686  KTI  688
             T+
Sbjct  668  GTV  670

114) bsaQ in NC_006349


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

115) bsaQ in NC_008835


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

116) bsaQ in NC_009079


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

117) bsaQ in NC_017832


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

118) BURPS1106A_A2085 in NC_009078


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

119) bsaQ in NC_007435


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

120) BURPS668_A2173 in NC_009075


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

121) BPC006_II2067 in NC_018529


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLIVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

122) bsaQ in NC_006351


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

123) invA in NC_021877


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  345 bits (1296),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 271/676 (41%), Positives = 468/676 (70%), Gaps = 50/676 (7%)

Query  29   IVPLPPYVLDFLIGLNIVTALLVFMGSFYIVNILEFSTFPPILLITTLFRLALSISTSRM  88
            I+PLP  V+D +I++NI TALL++M S+YI + L++S FP ILLITTL RL+LS+ST+R+
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   ILLTAEGGKIITTFGQFVIGDNLvvgfvvfvivtivqfiviTKGSERVAEVAARFSLDAM  148
            ILL  ++G II +FG+FV+G+N+VVG+++F I+TIVQF+VITKG+ERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLRAGIIDNEGVKARRSALERESQLYGSFDGAMKFIKGDAIAGIVVIFVNL  208
            PGKQMSID+D+RAG+ID    K+ RS +++ESQ+YG+ DGAMKF+KGDAIAGI++++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  IGGISVGVMQHGMSVSDALTTYTILSIGDGLVAQIPALLIAIGAGFVVTRVGGSG---NN  265
            +GG+ +G+ Q +M+ S+ALT +++LS+GD+LVAQIPALLI + AG VVTRV G     NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  266  LGANIVGELFSNPFvlvvtavlalaigllPGFPLIVFLLIALALGALYVRREWRKPGEPA  325
            L+++I+ ++ +N   ++++AVL L ++++PGFP  VF+++AL L  L + ++ +K + ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCL--LGISWQLKKKSVAG  328

Query  326  REgglvgkvagalsgggaakaadggagdVDIDKLIPETVPLMLMVPEAA-QPMFEQEGVI  384
                              +    ++++  + +++ + + PL + +  +  +  ++Q+  I
Sbjct  329  MK----------------GTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--I  370

Query  385  GAFRRRAFVDMGLRLPDIRVVYSPQVHPREAIVLI---NEIRAATFA---ICFDRHRVVG  438
               R++ F + G+ LP+I  V + Q +  + I L+   + ++  T+    I F+  +++ 
Sbjct  371  EVMRWKFFEESGIPLPGI--VINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILP  428

Query  439  S-TLALEGLPVDVVTLPDGAGGDAWWVPGAQTDALAKIDVLTRSAIDDLYGQFL--AVML  495
            +  ++ + L+           G      +++ + LA +  LT  + ++    FL   ++L
Sbjct  429  PFEFSHDKLSF----------GAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVL  478

Query  496  ANVSEFFGVQEAKRLLDDMDQKYPELIKESYRHISVQRIAEVFQRLLAEKISIRNMKLIL  555
            AN  EF+G+QEA+ L+D M++KY+EL+KE  R++++ +I +++QRL+ E+ISIR+++ I+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  556  ESLAQWGPKEKDSILLVEHVRAALARYISNRFAAGGK-LRALVLSAQFEDAVGKGVRQTS  614
            E+L  W++KEKD +LL E VR +L R I  R++ GG  L+  ++++++E+ +  ++RQTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  615  GGAYLNLEPATSEQlldrlalelaraGFSQRDMVLLASMEVRRFVKRLIESRFPELEVLS  674
            +G+YLN+ P  +EQ++  L   ++    ++ + VLL+++++RR++K+LIE  FP   VLS
Sbjct  599  SGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  675  FGEVADSVAIDVLKTI  690
            F EV++++ + VL T+
Sbjct  655  FQEVGNNIELKVLGTV  670

124) lcrD in NC_010287


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

125) lcrD in NC_016798


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

126) CTO_0095 in NC_017437


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

127) A363_00093 in NC_020966


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

128) A5291_00092 in NC_020939


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

129) lcrD in NC_007429


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

130) lcrD in NC_012687


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

131) sctV in NC_017434


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

132) sctV in NC_017436


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

133) SOTOND1_00092 in NC_020967


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

134) SOTOND5_00092 in NC_020943


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

135) SOTOND6_00092 in NC_020968


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

136) lcrD in NC_000117


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

137) lcrD in NC_017951


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

138) lcrD in NC_017953


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

139) G11074_00465 in NC_017440


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

140) G11222_00470 in NC_017430


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

141) CTG9301_00465 in NC_017432


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

142) G9768_00465 in NC_017429


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

143) SOTONG1_00091 in NC_020941


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

144) SOTONIA1_00092 in NC_020970


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

145) CTJTET1_00470 in NC_021892


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

146) SOTONK1_00092 in NC_020965


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

147) L1115_00091 in NC_020929


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

148) L1224_00091 in NC_020973


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

149) L1440_00091 in NC_020937


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

150) L225667R_00091 in NC_020930


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

151) CTLFINAL_01820 in NC_021052


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

152) CTLINITIAL_01820 in NC_021050


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

153) L2B795_00091 in NC_020938


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

154) L2B8200_00091 in NC_020945


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

155) L2BAMS1_00091 in NC_020933


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

156) L2BAMS2_00091 in NC_020934


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

157) L2BAMS3_00091 in NC_020977


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

158) L2BAMS4_00091 in NC_020978


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

159) L2BAMS5_00091 in NC_020936


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

160) L2BCAN1_00093 in NC_020935


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

161) L2BCAN2_00091 in NC_020932


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

162) L2BCV204_00091 in NC_020976


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

163) lcrD in NC_010280


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

164) L2BUCH2_00091 in NC_020931


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

165) L3404_00091 in NC_020974


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

166) CTRC69_00470 in NC_021895


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

167) CTRC342_00470 in NC_021890


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

168) CTRC852_00475 in NC_021888


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

169) CTRC943_00465 in NC_021896


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

170) CTRC953_00470 in NC_021889


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

171) CTRC966_00475 in NC_021898


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

172) CTRC971_00475 in NC_021899


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

173) CTRC122_00465 in NC_021891


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

174) CTRC55_00475 in NC_021893


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

175) CTRC3_00470 in NC_021897


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

176) CTRC46_00470 in NC_021887


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

177) A7249_00092 in NC_020944


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

178) SOTONF3_00092 in NC_020964


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

179) SOTONIA3_00092 in NC_020940


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

180) L2BLST_00091 in NC_020975


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

181) L11322_00091 in NC_020972


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

182) O170_00485 in NC_022106


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

183) O173_00485 in NC_022107


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

184) O175_00485 in NC_022108


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

185) O177_00490 in NC_022109


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

186) O169_00485 in NC_022117


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

187) O172_00485 in NC_022118


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

188) O176_00485 in NC_022119


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

189) O178_00480 in NC_022120


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

190) O180_00480 in NC_022121


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1291),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

191) CTL2C_683 in NC_015744


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1293),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  3    ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  62
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  63   ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  122
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  123  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  182
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  183  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  240
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  241  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  300
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  301  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  360
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  361  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  415
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  416  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  473
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  474  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  533
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  534  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  593
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  594  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  653
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  654  EVLPEIRIQPLGRIQIF  670
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

192) O179_00475 in NC_022110


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1293),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 466/677 (69%), Gaps = 43/677 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFXLMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP--  429

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  430  -FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEITRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

193) lcrD in NC_007899


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1293),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 278/680 (41%), Positives = 468/680 (69%), Gaps = 48/680 (7%)

Query  41   ILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD++I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLKAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILL   AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ R+ +QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSS--DKNTN  278
             GG+ IG+   +M ++QA  ++++LS+GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSFIFGLLGVI-LLAKKNSTA  337
            L+ +I  Q+  + R++++++   L  +++ GFP   F IL++   LLG+   L KK+ ++
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALC--LLGISWQLKKKSVAG  328

Query  338  KKgasgasttvgaaadgaatagdNPDDYSLTLPVILELGKDLSALIQHRTKSGQSFIDDM  397
             K         G+   +++   +N +  S + P+ +++G ++      RT      I++ 
Sbjct  329  MK---------GTLDPSSTDITGNQNITSGAEPLSINIGGGI-----YRTD-----IHQQ  369

Query  398  IPKMRQALYQDIGIRYPGIHVRTDSPS---LEGFDYMILLNEVPYVRGKI--PPHHVLTN  452
            I  MR  ++++ GI  PGI +  ++     +E F Y   ++    V++ I   P H+L  
Sbjct  370  IEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP  429

Query  453  -EVEENLKRYNLPFIT--YKNAAGLPSAWVSEDAKTILEKAAIKYWTPLEVIILHLSYFF  509
             E  ++    +L+F +  YK  +        ++  + L   ++ Y +  E II+ L  + 
Sbjct  430  FEFSHD----KLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLV  477

Query  510  HRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTI  569
              +++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI
Sbjct  478  LANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTI  537

Query  570  LESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQT  629
            +E+L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QT
Sbjct  538  FETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQT  597

Query  630  SAGSYLALDPDSVNLILKSMRNTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVI  689
            S+GSYL + P+  + I+  +++ +       +  VLLTA+D+RRY++KLIE  FP  +V+
Sbjct  598  SSGSYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVL  653

Query  690  SYQEILPEIRIQPLGRIQIF  709
            S+QE+  +I ++ LG ++ F
Sbjct  654  SFQEVGNNIELKVLGTVNDF  673

194) E11023_00470 in NC_017431


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

195) E150_00475 in NC_017439


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

196) BOUR_00092 in NC_020971


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

197) SOTONE8_00092 in NC_020942


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

198) lcrD in NC_017952


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

199) lcrD in NC_020511


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

200) lcrD in NC_020512


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

201) lcrD in NC_017441


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

202) SOTONE4_00092 in NC_020969


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  344 bits (1292),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 274/670 (41%), Positives = 468/670 (70%), Gaps = 29/670 (4%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
              G+   ++ + ++    ++          P+ +++G ++      RT      +++ I 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE-------PLSINIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLS  458
             MR  ++++ GI  PGI +  ++   +  + ++L +E   V+ + + ++++  E  + L+
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIE-LFLYQES--VHKQTIVKDIIYFEPGHILP  428

Query  459  RYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGI  518
             ++++      +A L  T    + L+ L   ++ Y S  E II+ L  +   N++EF+GI
Sbjct  429  PFEFSHDKLSFGAELYKTDSENQQLAHLSGLTV-YSSENEKIIFLLRKLVLANAKEFIGI  487

Query  519  QEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILESLSEWAQT  578
            QE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+L  W+  
Sbjct  488  QEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAK  547

Query  579  EKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDP  638
            EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+GSYL + P
Sbjct  548  EKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITP  607

Query  639  DSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIR  698
            +  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+QEV  +I 
Sbjct  608  ERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIE  663

Query  699  IQPLGRIQIF  708
            ++ LG ++ F
Sbjct  664  LKVLGTVNDF  673

203) sctV in NC_002620


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 469/677 (70%), Gaps = 43/677 (6%)

Query  41   IMPLPPVMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP ++VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGNVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRAQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ R+++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAVATLGIGFFKGFPLWSFALMAVVFAVLGILLItkknspgk  338
            L+ +I  Q+  + R++++SAV  L ++++ GFP       + VF +L++ L+       K
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFP-------TSVFMILALCLLGISWQLKK  323

Query  339  kgsssssttvgaadgasasgENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIP  398
            K+ ++   T++++    ++ +N    A  L++  ++G ++      RT      +++ I 
Sbjct  324  KSVAGMKGTLDPSSTDITGNQNITSGAEPLSI--NIGGGIY-----RTD-----IHQQIE  371

Query  399  KMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNEV  453
             MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L    
Sbjct  372  VMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPF-  430

Query  454  EENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHRN  511
              ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   N
Sbjct  431  --EFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLAN  480

Query  512  SQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILES  571
            ++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E+
Sbjct  481  AKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFET  540

Query  572  LSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAG  631
            L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+G
Sbjct  541  LIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSG  600

Query  632  SYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISYQ  691
            SYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+Q
Sbjct  601  SYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQ  656

Query  692  EVLPEIRIQPLGRIQIF  708
            EV  +I ++ LG ++ F
Sbjct  657  EVGNNIELKVLGTVNDF  673

204) lcrD in NC_012686


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 277/678 (41%), Positives = 466/678 (69%), Gaps = 44/678 (6%)

Query  41   ILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD +I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLHAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILLH  AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ RS++QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  AGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSS--DKDTN  278
             GG++IG+   +M  +QA  +++++++GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAILFAVLGILLITKKNSPgk  338
            L+ +I  Q+  + R++++SA   L ++++ GFP   F ++A+   +LGI    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILAL--CLLGISWQLKKKSVAG  328

Query  339  kggasstttvgaadgaaasgENSDDYYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMI  398
              G+   ++ + ++    ++           P+ +++G ++      RT      +++ I
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE--------PLSINIGGGIY-----RTD-----IHQQI  370

Query  399  PKMRQALYQDIGIRYPGIHVRTDSPSLEGND---YMILLNEVPYVRGKI--PPNHVLTNE  453
              MR  ++++ GI  PGI +  ++   +  +   Y   ++    V++ I   P H+L   
Sbjct  371  EVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP-  429

Query  454  VEENLSRYNLPFIT--YKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFFHR  511
               ++S+ +L+F +  YK  +         + L+ L   ++ Y S  E II+ L  +   
Sbjct  430  --FEFSHDKLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVLA  479

Query  512  NSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTILE  571
            N++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+E
Sbjct  480  NAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFE  539

Query  572  SLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSA  631
            +L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS+
Sbjct  540  TLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSS  599

Query  632  GSYLALDPDSVNLILKSMRMTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVISY  691
            GSYL + P+  + I+  ++  +       +  VLLTA+D+RRY++KLIE  FP  +V+S+
Sbjct  600  GSYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSF  655

Query  692  QEVLPEIRIQPLGRIQIF  709
            QEV  +I ++ LG ++ F
Sbjct  656  QEVGNNIELKVLGTVNDF  673

205) CAB445 in NC_004552


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  343 bits (1286),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 471/680 (70%), Gaps = 48/680 (7%)

Query  41   ILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  100
            I+PLP  +VD++I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  101  ILLKAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  160
            ILL   AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  161  PGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  220
            PGKQM+ID+D+RAG+IDA +A++ R+ +QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  221  VGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSS--DKNTN  278
             GG+ IG+   +M ++QA  ++++LS+GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  279  LGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSLIFGILGVI-LLAKKNNAT  337
            L+ +I  Q+  + R++++++   L  +++ GFP   F IL+L   +LG+   L KK+ A 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALC--LLGISWQLKKKSVAG  328

Query  338  KQgasgasttvgaaadgaaaaEDNPDDYSLTLPVILELGKDLSKLIQQRTKSGQSFVDDM  397
             +G+ ++S+T  ++ +  +++ +         P+ +++G ++      RT      +++ 
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE---------PLSINIGGGIY-----RTD-----IHQQ  369

Query  398  IPKMRQALYQDIGIRYPGIHVRTDSPS---LEGYDYMILLNEVPYVRGKI--PANHVLTN  452
            I  MR  ++++ GI  PGI +  ++     +E + Y   ++    V++ I   + H+L  
Sbjct  370  IEVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPP  429

Query  453  -EVEENLKRYNLPFIT--YKNAAGLPSAWVSEDAKTILEKAAIKYWTPLEVIILHLSYFF  509
             E  ++    +L+F +  YK  +        ++  + L   ++ Y +  E II+ L  + 
Sbjct  430  FEFSHD----KLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLV  477

Query  510  HRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTI  569
              +++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI
Sbjct  478  LANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTI  537

Query  570  LESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQT  629
            +E+L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QT
Sbjct  538  FETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQT  597

Query  630  SAGSYLALDPDSVNLILKSMRNTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVI  689
            S+GSYL + P+  + I+  +++ +       +  VLLTA+D+RRY++KLIE  FP  +V+
Sbjct  598  SSGSYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVL  653

Query  690  SYQEILPEIRIQPLGRIQIF  709
            S+QE+  +I ++ LG ++ F
Sbjct  654  SFQEVGNNIELKVLGTVNDF  673

206) sctV in NC_015713


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  342 bits (1283),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 267/661 (41%), Positives = 455/661 (69%), Gaps = 36/661 (5%)

Query  50   IAFNMSLSISLLMVALYIQKAVHLSIFPSVLLITTLFRLGIEIAATRQILLKADAGEIIQ  109
            IA+N+S ++ LLM+++YI+ +++LS+FP++LLITTL RL++ +++TR ILL  DAGEII 
Sbjct  43   IAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIY  102

Query  110  AfgefvvggnfivggvifliitivQFIVVTKGAERVAEVAARFTLDAMPGKQMSIDADMR  169
            +FG+FVVGGN++VG +IF IITIVQF+V+TKGAERVAEV+ARF+LD+MPGKQMSID+DMR
Sbjct  103  SFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMR  162

Query  170  SGTIDANQARELRLALQKESQLYGAMDGALKFVKGDviagiviavinivggliignMIHG  229
            +G IDA +A+ LR  +QKESQ+YGAMDGA+KFVKGD IAGI+I ++N+ GG++IG    +
Sbjct  163  AGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFD  222

Query  230  MTMLQSAQVYTLLSIGEGLVTQIPSLMISLTAGIVTTRVSSEK-KGGNLGKDITSQIFSH  288
            M   Q+  ++++LS+G++LV+QIP+L+I +TAG+V TRV++E+ K  NL+ DI  Q+ ++
Sbjct  223  MPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTN  282

Query  289  SKGLILAGIVTLGMAFLKGFPS--FLFLAVCAVLMSVGITNWvkekkkakkavagalgaa  346
            ++ +++++++ L  A++ GFP+  F++LA+C  L++++   W   KK      +      
Sbjct  283  NRPFMISAVLMLVFAIIPGFPTSVFMILALC--LLGIS---WQLKKKSVAGMKGTLD---  334

Query  347  QVETDVEGHTVVRGGLDDYALTLPVILETGKDLSSIIRKEKGGTAFVEEMIPKMRHALYQ  406
               TD+ G+  + +G +      P+ ++ G   ++I R +      +++ I  MR  +++
Sbjct  335  PSSTDITGNQNITSGAE------PLSINIG---GGIYRTD------IHQQIEVMRWKFFE  379

Query  407  DLGIRFPGVHVRTESPSLDANEYSIYLNEVPLVRGKILSGSVLTNETEETLRRYNLPFTS  466
            + GI +PG+ +  ++   +  E  +Y + V   + + +   ++  E  + L  ++  F+ 
Sbjct  380  ESGIPLPGIVINQQNNKDNVIELFLYQESV---HKQTIVKDIIYFEPGHILPPFE--FSH  434

Query  467  SKNVVGQASLWVENKYVEVLKKAGIK-YWEPLDVMILHLSQFYKQYAAEFIGIQEVRAIL  525
             K   G      ++   ++   +G+  Y    + +I+ L ++    A EFIGIQE R ++
Sbjct  435  DKLSFGAELYKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLM  494

Query  526  EFVEKSFPDLIKEVTRLVPLQKLTEIFKRLVQEQVSVKDLRTILEALSEWAQTEKDTVLL  585
            +++EK +++L+KE+ R + + K+ +I++RLV+E++S++DLRTI+E+L  W+  EKD VLL
Sbjct  495  DIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLL  554

Query  586  TEYVRSSLKRYISYKYSLGQTVLSVYLLDPEIEDMVRGAIKQTSAGSYLALDPDSVQLIL  645
             EYVR SL+R I  +Y++G T+L V L+++E+E+ +R +I+QTS+GSYL + P+  + I+
Sbjct  555  CEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQII  614

Query  646  HAMRGVIAPTPPGGQPPVLLTAIDVRRFVRKLIEGEFPDLPTVSYQEIVPEIRIQPLGRI  705
              ++ V++P   G    VLLTA+D+RR+++KLIE  FP  P +S+QE+  +I ++ LG +
Sbjct  615  LLLKQVVTPENNG----VLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTV  670

Query  706  Q  706
            +
Sbjct  671  N  671

207) sctV, cdsV in NC_015702


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  341 bits (1280),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 285/697 (41%), Positives = 485/697 (70%), Gaps = 73/697 (10%)

Query  5    IIPVNPHIIDFLIALNLTASVALLMVALYIPSAVHLSIFPSLLLITTLYRLGVNIASTRQ  64
            IIP+   ++D +IA+N+++++ LLM+++YI S+++LS+FP++LLITTL RL++++++TR 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  65   ILLHANAGDiifqfgqfvvggnfvvggvifliiTLVQFIVITKGAERVAEVAARFTLDAM  124
            ILLH +AG+II+ FG+FVVGGN+VVG +IF IIT+VQF+VITKGAERVAEV+ARF+LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  125  PGKQMSIDADMRAGILDSNQAREKRLAIQKESQLYGAMDGAMKFVKGDaiagivitlini  184
            PGKQMSID+DMRAG++D+ +A+  R  +QKESQ+YGAMDGAMKFVKGDAIAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  185  iggmiigmtlngMPAMDAVTTYSLLSIGDGLVSQIPALLISITAGIVTTRVSSDKA-ESN  243
            +GG++IGM   +MP  +A+T +S+LS+GD+LV+QIPALLI +TAG+V TRV++++  E+N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  244  LGSEISGQILKQPKALLISAGFLMGMAAIPGFPKPPFLIFASALGLLGYSLWVSEKQKVE  303
            L+++I  Q+  + ++++ISA +++  A IPGFP + F+I+  AL LLG S W   K+ V 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMIL--ALCLLGIS-WQLKKKSVA  327

Query  304  aartgggagggtissaadtstVDMGVQGHKVVSGGGIDSYALTLPVVLECGSSLSQEIQK  363
            + +   +++               ++ G++ +++G+        P+ ++ G++    I +
Sbjct  328  GMKGTLDPS-------------STDITGNQNITSGAE-------PLSINIGGG----IYR  363

Query  364  AQKGQSFIDKMIPKMRQALYADLGVRFPGVHVRTDSPILEKDE------YSIHLNEVPIV  417
            ++     I++ I  MR  ++ + G+ +PG+ +  ++   +KD+      Y   ++   IV
Sbjct  364  TD-----IHQQIEVMRWKFFEESGIPLPGIVINQQN---NKDNVIELFLYQESVHKQTIV  415

Query  418  K-------GRVLEGFVLTNESEENLKRYNLSYTT--YKSALGLPSLWVESKNIDLLNKAG  468
            K       G++L  F ++++        +LS+ +  YK+         +S N +L + +G
Sbjct  416  KDIIYFEPGHILPPFEFSHD--------KLSFGAELYKT---------DSENQQLAHLSG  458

Query  469  VK-YWNSLEVMILHISYFFRTYANEFVGIQEVKSMLEFVEKSFPDLVKEVTRLIPLQKMT  527
            +  Y +  E +I+ +  +  + A+EF+GIQE + +++++EK +++LVKE+ R + + K+ 
Sbjct  459  LTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIV  518

Query  528  DIFKRLIQEQVSIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKRYISYKYSQGQSVLS  587
            DI++RL++E++SI+DLRTI+E+L  W+  EKD VLL EYVR SL+R I  +Y+ G ++L 
Sbjct  519  DILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLH  578

Query  588  VYILDPEIEDMVRGAIKQTSAGSYLALDPDSVQLILQGVRNTVAppppggqppVLLTAID  647
            V ++++E+E+ +R +I+QTS+GSYL + P+  + I+  +++ V+      +  VLLTA+D
Sbjct  579  VWLIGSELENELRESIRQTSSGSYLNITPERTEQIILLLKQVVT----PENNGVLLTALD  634

Query  648  VRRFVRKLIEMEFTDISVVSYQEIVPEIRIQPLGRVQ  684
            +RR+++KLIE  F   +V+S+QE+  +I ++ LG V+
Sbjct  635  IRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTVN  671

208) flhA in NC_021505


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  340 bits (1278),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 288/702 (42%), Positives = 476/702 (68%), Gaps = 54/702 (7%)

Query  1    MLDKFLRSIISRPELLILTLMVMIIAMLIIPLPTPLVDFLIGLNIVIAILVFMGSFYIER  60
            +LD F + + S  +L++  +  M + M+IIPLPT +VD +I++NI  A+L++M S+YI  
Sbjct  4    ILDSF-KKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIKS  62

Query  61   ILSFSTFPalllittlfrlalSISTSRLILVQADAGEIIASFGEFVIGDSLVVGFVIFAI  120
             L +S FP++LLITTL RL+LS+ST+RLIL++ DAGEII SFG+FV+G+++VVG++IF+I
Sbjct  63   PLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTI  122

Query  121  VTIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDGDLKAGVIDAKEARERRSTLERES  180
            +TIVQF+VITKG+ERVAEV+ARFSLDGMPGKQMSIDGD++AGVIDA EA+  RS +++ES
Sbjct  123  ITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKES  182

Query  181  QLYGSFDGAMkfikgdaiagiiiifVNFLGGIAIGVGQLGMDMSEALSTYTLLTIGDGLV  240
            Q+YG+ DGAMKF+KGDAIAGIII++VN++GG+ IG+ Q++M  S+AL+ +++L++GD+LV
Sbjct  183  QFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDALV  242

Query  241  AQIPALLIAIGAGFIVTRVNGD---EANLGRNMMTQLLGH--PFVLGITALLAVGVGMLP  295
            AQIPALLI + AG +VTRV G+   E NL+ +++ Q+  +  PF+  I+A+L +  +++P
Sbjct  243  AQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFM--ISAVLMLVFAIIP  300

Query  296  GFPAAVFLIIASALVALLFFRHRLEKKTSGNAPVTPLAADEGDAESELGLIENVDNMATE  355
            GFP++VF+I+A  L+++     +L KK+ +    T L +   D  ++  +    + ++ +
Sbjct  301  GFPTSVFMILALCLLGI---SWQLKKKSVAGMKGT-LDPSSTDITGNQNITSGAEPLSIN  356

Query  356  TVALMLLVPSARVEALRAARLCERFRSQFFIDYGIRIPEPRLRGTDSLPPGQVAVLI---  412
              +        R +  +     E  R +FF + GI +P   +   ++   ++V  L+   
Sbjct  357  IGG-----GIYRTDIHQQI---EVMRWKFFEESGIPLPGIVINQQNN--KDNVIELFLYQ  406

Query  413  NEVRADQFD---IHFD---LLRVVDYKPELEHLGLDLTTGVDSNMQ----TSVWVRSTER  462
            + V+ + +    I F+   +L   ++  +   +G +L      N Q    +++ V S+E 
Sbjct  407  ESVHKQTIVKDIIYFEPGHILPPFEFSHDKLSFGAELYKTDSENQQLAHLSGLTVYSSEN  466

Query  463  EKLQNLGHQLRPAYDEFYRCLVTLLARNISEFFGVQESKVLLDEMEARYPDLVKEVYRHA  522
            EK+  L              L  L+  N  EF+G+QE++ L+D ME +Y++LVKE+ R+ 
Sbjct  467  EKIIFL--------------LRKLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQL  512

Query  523  SVQKVAELLQRLVAERISVRNMKLILETLAHWALREKDVIALVEHVRGGLARYISNKFAN  582
            ++ K+ ++LQRLV E IS+R+++ I+ETL  W+ +EKDV+ L E VR +L R I  +++ 
Sbjct  513  GIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGV  572

Query  583  GND-LRVLLLSPEFEDVVRRGIRQTSTGSFINLEPSASEELMDRLAVGLDSLHIPQKDMV  641
            G   L+V L+++E+E+ +R +IRQTS+GS++N+ P  +E+++    + L  +  P+++ V
Sbjct  573  GGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQII----LLLKQVVTPENNGV  628

Query  642  ILASVDVRRYIKKLIEGRFRELDVVSFGEISDSISVQVIKTL  683
            +L+++D+RRY+KKLIE  F    V+SF E++++I ++V+ T+
Sbjct  629  LLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTV  670

209) B712_0503 in NC_018626


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  340 bits (1278),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 272/679 (41%), Positives = 469/679 (70%), Gaps = 46/679 (6%)

Query  22   ILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQ  81
            I+PLP  +VD++I+IN++ +++LLM+++YI S+L+LSVFP++LLITT+ RL++++S++R 
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  82   ILLKAYAGHVIQAFGDFVVGGNYvvgfiifliitiiqfivvTKGaervaevaarFRLDAM  141
            ILL   AG++I +FG+FVVGGN VVG+IIF IITI+QF+V+TKGAERVAEV+ARF LD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  142  PGKQMAIDADLRAGMIDAQQARDKRSMIQKESELYGAMDGAMKFIKGDVIAGIVISLINI  201
            PGKQM+ID+D+RAG+IDA +A++ RS +QKES++YGAMDGAMKF+KGD IAGI+I L+N+
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  202  VGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSS--DKNTN  259
             GG+ IG+   +M ++QA  ++++LS+GD+LV+QIP+LLI +TAG+V TRV++  DK+ N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  260  LGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSLIFGILGVILLAKKNSASK  319
            L+ +I  Q+  + R++++++   L  +++ GFP   F IL+L   +LG+    KK+S + 
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALC--LLGISWQLKKKSVAG  328

Query  320  QgasgasttvgaasdgaaaagdNPDDYSLTLPVILELGKDLSKLIQQKTKSGQSFVDDMI  379
              ++  +++ + +++   ++G +        P+ +++G ++ +          + +++ I
Sbjct  329  MKGTLDPSSTDITGNQNITSGAE--------PLSINIGGGIYR----------TDIHQQI  370

Query  380  PKMRQALYQDIGIRYPGIHVRTDSPS---LEGYDYMILLNEVPYVRGKI--PANHVLTN-  433
              MR  ++++ GI  PGI +  ++     +E + Y   ++    V++ I   + H+L   
Sbjct  371  EVMRWKFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPGHILPPF  430

Query  434  EVEENLKRYNLPFLT--YKNAAGLPSAWVSEDAKAILEKAAIKYWTPLEVIILHLSYFFH  491
            E  ++    +L+F +  YK  +        ++  A L   ++ Y +  E II+ L  +  
Sbjct  431  EFSHD----KLSFGAELYKTDS-------ENQQLAHLSGLTV-YSSENEKIIFLLRKLVL  478

Query  492  RSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLRTIL  551
             +++EF+GIQE R ++++ME+ +++LVKE+ R + + K+ +I++RLV+E+ISI+DLRTI+
Sbjct  479  ANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIF  538

Query  552  ESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTS  611
            E+L  W+  EKD VLL EYVR SL+  I  +++ G + + V L+++E+E+ +R +I+QTS
Sbjct  539  ETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTS  598

Query  612  AGSYLALDPDSVNLILKSMRNTItptppggqppVLLTAIDVRRYVRKLIETEFPDIAVIS  671
            +GSYL + P+  + I+  +++ +       +  VLLTA+D+RRY++KLIE  FP  +V+S
Sbjct  599  SGSYLNITPERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLS  654

Query  672  YQEILPEIRIQPLGRIQIF  690
            +QE+  +I ++ LG ++ F
Sbjct  655  FQEVGNNIELKVLGTVNDF  673

210) bcrD in NC_018829


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  338 bits (1267),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 279/669 (42%), Positives = 465/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQT-GDSPSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV    D  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +      + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYR----TDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

211) bcrD in NC_017223


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  337 bits (1265),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 278/669 (42%), Positives = 466/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +      + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYR----TDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

212) bcrD in NC_002929


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  337 bits (1265),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 278/669 (42%), Positives = 466/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +      + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYR----TDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

213) bcrD in NC_018518


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  337 bits (1266),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 278/669 (42%), Positives = 466/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +      + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYR----TDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----STDFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

214) bcrD in NC_018828


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  335 bits (1259),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 279/669 (42%), Positives = 467/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +   +  + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGI---Y-RTDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVTASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  T S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

215) bcrD in NC_019382


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 278/669 (42%), Positives = 467/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +   +  + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGI---Y-RTDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

216) bcrD in NC_002927


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 278/669 (42%), Positives = 466/669 (70%), Gaps = 35/669 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAGPALAGMAADGLPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +   P +   ++ Q   + + PL I++++ +   +  + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGI---Y-RTDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEI  689
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+QE+  +I
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEVGNNI  662

Query  690  NVQPLGRVD  698
            +++ LG V+
Sbjct  663  ELKVLGTVN  671

217) PMI2694 in NC_010554


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  330 bits (1240),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 276/679 (41%), Positives = 462/679 (69%), Gaps = 57/679 (8%)

Query  34   TYLVDFLIGLNITIAILIFMSSFYIKRILNFMTFPalllittlfrlalSISTSRLILLDA  93
            T +VD +I++NI+ A+L++M S+YIK  L++  FP++LLITTL RL+LS+ST+RLILL+ 
Sbjct  36   TIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRLILLHH  95

Query  94   DAGEIITSFGEFVIGENLVVGFVVFSIVTIVQFLVITKGSERVAEVAARFSLDGMPGKQM  153
            DAGEII SFG+FV+G N+VVG+++F+I+TIVQF+VITKG+ERVAEV+ARFSLDGMPGKQM
Sbjct  96   DAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQM  155

Query  154  SIDADLKSGIITNEEVQIRRKELGQESQLYGSFDGAMKFIKGDAIAGIVIIFVNLIGGIS  213
            SID+D+++G+I   E +  R  + +ESQ+YG+ DGAMKF+KGDAIAGI+I++VNL+GG+ 
Sbjct  156  SIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVL  215

Query  214  VGMAQMGLSITEALHTYTLLTIGDGLVAQIPALLISISAGFIVTRVGGEN---NNLGYSI  270
            +GM Q ++++++AL  +++L++GD+LVAQIPALLI ++AG +VTRV GEN   NNL+  I
Sbjct  216  IGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENNLAGDI  275

Query  271  MNELLAQDFALLVTAILAFGIGFLPGFPTPVFLILSV-MLGVyffkikwksskkeykTED  329
            ++++ +++ +++++A+L + ++++PGFPT+VF+IL++ +LG+                  
Sbjct  276  IHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISW----------------  319

Query  330  EKDNHNATNADSKKGLMSNLFSGKHGEEVDNSLLTENITLSQAETLPLIITLSTKKKPYL  389
               + +  +  + KG +        + ++  +   +NIT S AE L++ I  +  +    
Sbjct  320  ---QLKKKSVAGMKGTLDP-----SSTDITGN---QNIT-SGAEPLSINIGGGIYRTDIH  367

Query  390  TKIVFEKWLQKEFILQYGILLPDIVIHYSdkidddkiiiLINEVKAKELNCP----FPLF  445
             +I   +W    F+ + GI LP+IVI+  ++ D+   ++L +E   K+        F   
Sbjct  368  QQIEVMRW---KFFEESGIPLPGIVINQQNNKDNVIELFLYQESVHKQTIVKDIIYFEPG  424

Query  446  HIENP---NDELLSLGFNLISIEDDNKTHYWIERDDESKLAPLG-YKAERSESYFYRKFS  501
            HI  P   +++ LS+G +L   + +N        ++ + L+ L  Y +E     F   + 
Sbjct  425  HILPPFEFSHDKLSFGAELYKTDSEN--------QQLAHLSGLTVYSSENEKIIFL--LR  474

Query  502  DLITLNITEFLGIQETKDILDKLEKSAPELLKECYRQVSIQRINDVLQRLVQEKIPIRNI  561
             L+  N  EF+GIQE++ ++D +EK  +EL+KE  RQ++I +I D+LQRLV+E+I+IR++
Sbjct  475  KLVLANAKEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDL  534

Query  562  KTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISYFFSTDGKFNAI-ILSNDMEEiirsgi  620
            +TI+  L+ W++KEKD VLL E +R  L R I   ++ +G    + ++++++E+ +R +I
Sbjct  535  RTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESI  594

Query  621  rqsssgTLLNLEPAELDMIIEKISMVIDDIKYIQDYIFLTSIDIRRFVKKLIETQYPQIP  680
            RQ+SSG+ LN+ P   + II  +  V+   +   + ++LT++DIRR++KKLIE  +P  P
Sbjct  595  RQTSSGSYLNITPERTEQIILLLKQVVTPEN---NGVLLTALDIRRYMKKLIEKAFPSTP  651

Query  681  VLSYDEITSDIEINVLQSI  699
            VLS++E+ ++IE++VL ++
Sbjct  652  VLSFQEVGNNIELKVLGTV  670

218) invA in NC_011751


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  327 bits (1228),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 280/697 (41%), Positives = 489/697 (71%), Gaps = 41/697 (5%)

Query  3    NKVLIGLR---SHPELIILGLMVMIIAMLIIPLPTYLIDFLIGLNLTLAILVFLGSFYVD  59
            +K+L +++   S  +LI+  +  M + M+IIPLPT ++D +I++N++ A+L+++ S+Y+ 
Sbjct  2    SKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIK  61

Query  60   RilsfssfpsilliTTLFRLALAISTSRLILLEADAGEIITSFGEFVIGDSLVVGFVIFS  119
              L +S FP+ILLITTL RL+L++ST+RLILL+ DAGEII SFG+FV+G+++VVG++IF+
Sbjct  62   SPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFT  121

Query  120  IVTIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLRAGIIDADLAKERRSVLERE  179
            I+TIVQF+VITKG+ERVAEV+ARFSLDGMPGKQMSID+D+RAG+IDA  AK  RS +++E
Sbjct  122  IITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKE  181

Query  180  SQLYGSFDGAMKfikgdaianiiiifvniigGLSVGVGQNGMDFSTALTVYTILTVGDGL  239
            SQ+YG+ DGAMKF+KGDAIA III++VN++GG+ +G+ Q +M FS ALT++++L+VGD+L
Sbjct  182  SQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDAL  241

Query  240  VSQIPALLIAISAGFIVTRVNGDSD---NMGQNIISQLLSNSFVIIVTCVLALSIgllpg  296
            V+QIPALLI ++AG +VTRV G++D   N++ +II Q+ +N+  ++++ VL L ++++PG
Sbjct  242  VAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPG  301

Query  297  fpllvflclAV-ILGIyfyfkfkkkGVEETVVEGDITVGLEPYNQDDDISLGIINKLDQV  355
            FP  VF+ LA+ +LGI          +    V G +   L+P + D       I   +++
Sbjct  302  FPTSVFMILALCLLGISWQ-------LKKKSVAG-MKGTLDPSSTD-------ITGNQNI  346

Query  356  ITETVPLVLIMNSVQAKKY-TEINLA-DRIRSQFFIEYGIRIPGIVIREGEGLNDEDVIL  413
             + + PL +   ++ +  Y T+I+   + +R +FF E GI +PGIVI + +  +D+ + L
Sbjct  347  TSGAEPLSI---NIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNVIEL  402

Query  414  MLNEVRASQFKIYHDLVLLVEYSDEVVSTLIKKPVIVNNNGEQYYWVTKSDAQKLTKIG-  472
             L +    +  I  D++ +   ++++++ +      ++  +E Y   T S+ Q+L+ ++ 
Sbjct  403  FLYQESVHKQTIVKDIIYFE--PGHILPPFEFSHDKLSFGAELY--KTDSENQQLAHLSG  458

Query  473  --CYTRTAMDEMYNHLSVCLAHNINEYFGIQETKYILDQLEMKYPDLLKEILRYITVQRI  530
               Y+      ++    + LA+  +E++GIQE++Y++D +E KY++L+KE+ R + + +I
Sbjct  459  LTVYSSENEKIIFLLRKLVLANA-KEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  531  SEVIQRLIQERISVRNMRLVMEALALWSPREKDIITLVEHVRGALGRYICHKFSYSGEIK  590
             +++QRL++E IS+R++R + E+L +WS++EKD++ L E VR +L R I  +++ +G + 
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  591  AI-VISPEIEDRIRDGVRPTAGGTFLNLDASEAEMILDNFKLALSGINIPIKDIILLGSV  649
             + +I++E+E+ +R+++R T++G++LN+ +  +E I+    L L  +  P ++ +LL ++
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQII----LLLKQVVTPENNGVLLTAL  633

Query  650  DIRRFIKKLIESSYRDLEVLSYGELTENVPVNILKTI  686
            DIRR++KKLIE ++    VLS+ E+ +N+ +++L T+
Sbjct  634  DIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTV  670

219) bcrD in NC_002928


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  325 bits (1218),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 272/655 (42%), Positives = 457/655 (70%), Gaps = 35/655 (5%)

Query  37   ILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIATTRL  96
            I+PLPT +VD++I+ N++ + +LLM+++Y+ SPL +S FP++LL+TTL RL++S++TTRL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  97   ILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSLDAM  156
            ILL+ DAG+II +FGNFVVGGN++VGL++F I+TIVQF+VITKGAERVAEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  157  PGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnl  216
            PGKQMSID+D+RAG ID  EA+  R  V+KESQ+YGAMDGAMKFVKGDAIAG+IIV VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  217  lggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-PSN  275
            +GG+L+G+ Q +++ ++A+  +++L++GD+L+AQIPAL+I + AG++VTRV   ++  +N
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  276  VGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPE  335
            ++ DI  QV ++ R+++I++ +   +++IPG PT VF  LA  +  I+  L + S     
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGISWQLKKKS-----  325

Query  336  GAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRA  395
                 +AGM +  +P +   ++ Q   + + PL I++++ +   +  + + +++  +R+ 
Sbjct  326  -----VAGMKGTLDPSSTDITGNQNITSGAEPLSINIGGGI---Y-RTDIHQQIEVMRWK  376

Query  396  LYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAY  455
            ++ + G+P+PGI +   +    N   + L + +V +  +  D +   +  + L ++ ++ 
Sbjct  377  FFEESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDIIYF-EPGHILPPFEFSH  434

Query  456  ETGAAFLPDTPTIWVAASLTGALRD-AGIP-YLGISQILTWHLAYVLKKY----SADFIG  509
            +     L+  + +  + S    L + +G+  Y + ++     + ++L+K     + +FIG
Sbjct  435  DK----LSFGAELYKTDSENQQLAHLSGLTVYSSENE----KIIFLLRKLVLANAKEFIG  486

Query  510  IQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQ  569
            IQE+R+L+  ME ++++LVKE  R + + KI +ILQRLV E++SIR+LR+++E+L+ W+ 
Sbjct  487  IQEARYLMDIMEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSA  546

Query  570  KEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALD  629
            KEKD VLL EYVRI+L+R I  +Y  G  +L   L+++ +E+ +R +IRQT++GSYL + 
Sbjct  547  KEKDVVLLCEYVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNIT  606

Query  630  PDTTRRLVEYIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYRN  684
            P+ T +++  ++Q V    +  +  VLLT++DIRRY +K+IE  + + PVLS+++
Sbjct  607  PERTEQIILLLKQVV----TPENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQE  657

220) eivA in NC_017646


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  323 bits (1212),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 279/697 (41%), Positives = 490/697 (71%), Gaps = 41/697 (5%)

Query  3    NKVLIGLR---SHPELIILGLMVMIIAMLIIPLPTYLIDFLIGLNLTLAILVFLGSFYVD  59
            +K+L +++   S  +LI+  +  M + M+IIPLPT ++D +I++N++ A+L+++ S+Y+ 
Sbjct  2    SKILDSFKKFDSYHDLILAFFFFMAVMMMIIPLPTIVVDMIIAINISTALLLLMLSIYIK  61

Query  60   RilsfssfpsilliTTLFRLALAISTSRLILLEADAGEIITSFGEFVIGDSLVVGFVIFS  119
              L +S FP+ILLITTL RL+L++ST+RLILL+ DAGEII SFG+FV+G+++VVG++IF+
Sbjct  62   SPLDLSVFPTILLITTLMRLSLSVSTTRLILLHHDAGEIIYSFGNFVVGGNIVVGLIIFT  121

Query  120  IVTIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLRAGIIDADLAKERRSVLERE  179
            I+TIVQF+VITKG+ERVAEV+ARFSLDGMPGKQMSID+D+RAG+IDA  AK  RS +++E
Sbjct  122  IITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDAVEAKGLRSKVQKE  181

Query  180  SQLYGSFDGAMKfikgdaianiiiifvniigGLSVGLGQNGMDFSTALTVYTILTVGDGL  239
            SQ+YG+ DGAMKF+KGDAIA III++VN++GG+ +G+ Q +M FS ALT++++L+VGD+L
Sbjct  182  SQFYGAMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSQALTLFSVLSVGDAL  241

Query  240  VSQIPALLIAISAGFIVTRVNGDSD---NMGQNIMSQLLSNSFVIIVTCVLALSIgllpg  296
            V+QIPALLI ++AG +VTRV G++D   N++ +I+ Q+ +N+  ++++ VL L ++++PG
Sbjct  242  VAQIPALLICVTAGVVVTRVPGENDKENNLAGDIIHQVSTNNRPFMISAVLMLVFAIIPG  301

Query  297  fpllvflclAV-ILGIyfyfkfkkkGAEETVVEGDITVGLEPYNQDDDISLGIINKLDQV  355
            FP  VF+ LA+ +LGI   +K K  ++        +   L+P + D       I   +++
Sbjct  302  FPTSVFMILALCLLGISWQLKKKSVAG--------MKGTLDPSSTD-------ITGNQNI  346

Query  356  ITETVPLVWIMNSVQAKKY-TEINLA-DRIRSQFFIEYGIRIPGIVIREGEGLNDEDVIL  413
             + + PL     ++ +  Y T+I+   + +R +FF E GI +PGIVI + +  +D+ + L
Sbjct  347  TSGAEPLS---INIGGGIYRTDIHQQIEVMRWKFFEESGIPLPGIVINQQNN-KDNVIEL  402

Query  414  MLNEVRASQFKIYHDLVLLVEYSDEVVSTLIKKPVIVNSNGEQYYWVTKSDAQKLTKIG-  472
             L +    +  I  D++ +   ++++++ +      ++  +E Y   T S+ Q+L+ ++ 
Sbjct  403  FLYQESVHKQTIVKDIIYFE--PGHILPPFEFSHDKLSFGAELY--KTDSENQQLAHLSG  458

Query  473  --CYTRTAMDEMYNHLSVCLAHNINEYFGIQETKYILDQLEVKYPDLLKEILRYITVQRI  530
               Y+      ++    + LA+  +E++GIQE++Y++D +E KY++L+KE+ R + + +I
Sbjct  459  LTVYSSENEKIIFLLRKLVLANA-KEFIGIQEARYLMDIMEKKYSELVKELQRQLGIGKI  517

Query  531  SEVIQRLIQERISVRNMRLVMEALALWSPREKDIITLVEHVRGALGRYICHKFSYSGEIK  590
             +++QRL++E IS+R++R + E+L +WS++EKD++ L E VR +L R I  +++ +G + 
Sbjct  518  VDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCEYVRISLRRHILGRYGVGGTML  577

Query  591  AI-VISPEIEDRIRDGVRPTAGGTFLNLDASEAEMILDNFKLALSGINIPIKDIILLGSV  649
             + +I++E+E+ +R+++R T++G++LN+ +  +E I+    L L  +  P ++ +LL ++
Sbjct  578  HVWLIGSELENELRESIRQTSSGSYLNITPERTEQII----LLLKQVVTPENNGVLLTAL  633

Query  650  DIRRFIKKLIESSYRDLEVLSYGELTENVPVNILKTI  686
            DIRR++KKLIE ++    VLS+ E+ +N+ +++L T+
Sbjct  634  DIRRYMKKLIEKAFPSTPVLSFQEVGNNIELKVLGTV  670

221) SG0563 in NC_007712


> JQ747540|54|G49|397782036|AFO66414.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|43589..45616|escV|SESS1635_03860|putative 
LEE-encoded type III secretion system factor
Length=675

 Score =  319 bits (1197),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 268/646 (42%), Positives = 451/646 (70%), Gaps = 23/646 (3%)

Query  29   IIPLPTYLIDFLIGLNLTMAILIFMGSFYISRILDFSSFPSILLVTTLFRLAISISTSRL  88
            IIPLPT ++D +I++N++ A+L++M S+YI   LD+S FP+ILL+TTL RL++S+ST+RL
Sbjct  31   IIPLPTIVVDMIIAINISTALLLLMLSIYIKSPLDLSVFPTILLITTLMRLSLSVSTTRL  90

Query  89   VLMDADAGEIVASFGQFVIGDNLvvgfviffivtvvqfiviTKGSERIAEVAARFSLDAM  148
            +L++ DAGEI+ SFG+FV+G+N+VVG++IF I+T+VQF+VITKG+ER+AEV+ARFSLD+M
Sbjct  91   ILLHHDAGEIIYSFGNFVVGGNIVVGLIIFTIITIVQFMVITKGAERVAEVSARFSLDGM  150

Query  149  PGKQMSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFikgdaiagiiiifvnl  208
            PGKQMSID+D++AGV+D    K  R  ++ ESQ+YGA+DGAMKF+KGDAIAGIII++VNL
Sbjct  151  PGKQMSIDGDMRAGVIDAVEAKGLRSKVQKESQFYGAMDGAMKFVKGDAIAGIIIVLVNL  210

Query  209  iggiSVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVn--nnknnn  266
            +GG+ +GM Q +M +S+ALT+++ LS+GDALVAQIPALLI +++G +VTRV   N+K+NN
Sbjct  211  FGGVLIGMWQFDMPFSQALTLFSVLSVGDALVAQIPALLICVTAGVVVTRVPGENDKENN  270

Query  267  LGSKIITDLFANQSTLMVTACLALAMGFLPGFPLPVFIVLSALLIVIYFKDKWSNRNKVK  326
            L++ II ++ +N+  +M++A L L  +++PGFP +VF++L+  L+ I     W  ++K  
Sbjct  271  LAGDIIHQVSTNNRPFMISAVLMLVFAIIPGFPTSVFMILALCLLGI----SWQLKKKSV  326

Query  327  SGEGHRDKTADDEGQSEAVTIDGDIIPETLPLMITFNEA-FKPKLEQHNLSSLLKKNFFI  385
            +G       +  +  S  +T + +I + + PL I +  + ++  ++Q+    +++ +FF 
Sbjct  327  AG-----MKGTLDPSSTDITGNQNITSGAEPLSINIGGGIYRTDIHQQ--IEVMRWKFFE  379

Query  386  EYGVRLPEITIGYAPKSACDSMSIAINEIPVADYTVMPGMHKVLINGEELKMLDNSVQSI  445
            E G+ LP I I    ++  + + + + + +V   T++ ++   +  G+ L  ++ S + +
Sbjct  380  ESGIPLPGIVIN-QQNNKDNVIELFLYQESVHKQTIVKDI-IYFEPGHILPPFEFSHDKL  437

Query  446  NTPQGISYWLPEEKADNAQKMGYVT-RSAIDEFYFCISTLLTHNISEFFGIQETKMLLDD  504
            +    + Y    E+ + A+  G     S  + + F +  L+  N  EF+GIQE++ L+D 
Sbjct  438  SFGAEL-YKTDSENQQLAHLSGLTVYSSENEKIIFLLRKLVLANAKEFIGIQEARYLMDI  496

Query  505  LEKKYPELLKESYRNNTVQRISEVFQRLLKERISIRNMKLILESLVQWGPKEKDPIMLVE  564
            +EKKY+EL+KE  R+  + +I +++QRL+ E ISIR+++ I+E+L+ W++KEKD ++L E
Sbjct  497  MEKKYSELVKELQRQLGIGKIVDILQRLVEENISIRDLRTIFETLIFWSAKEKDVVLLCE  556

Query  565  HVRGALGRYICNRFSYLGK-ICALVFTHDIEEKVRGGIRQTSGGSFINLTPPEIDEILNY  623
             VR +L R I  R++  G  +   ++  ++E+ +R +IRQTS+GS++N+TP   ++I+  
Sbjct  557  YVRISLRRHILGRYGVGGTMLHVWLIGSELENELRESIRQTSSGSYLNITPERTEQIILL  616

Query  624  LTECLNKNGISSRDIILLVSVDIRRFIKKLVEGRYPELEVLSFNEM  669
            L + +     +  + +LL ++DIRR++KKL+E  +P   VLSF+E+
Sbjct  617  LKQVVT----PENNGVLLTALDIRRYMKKLIEKAFPSTPVLSFQEV  658