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Homologs of ORF_55 gene of DQ095216

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) APECO1_3483
( YP_854328.1 )

hypothetical protein

NC_008563
(Escherichia coli APEC O1)

0.0

100

2) ECS88_3319
( YP_002392928.1 )

hypothetical protein

NC_011742
(Escherichia coli S88)

0.0

100

3) ETEC_4447
( YP_006117986.1 )

inner membrane protein

NC_017633
(Escherichia coli ETEC H10407)

0.0

4) UMNK88_pEnt24
( YP_006131757.1 )

hypothetical protein

NC_017640
(Escherichia coli UMNK88)

0.0

• Sequence Alignments

1) APECO1_3483 in NC_008563


> DQ095216|54|G54|70608392|AAZ04464.1|Escherichia_coli_APEC_O1|+|54166..55701|-|ORF_55|conserved 
hypothetical protein
Length=511

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/511 (100%), Positives = 511/511 (100%), Gaps = 0/511 (0%)

Query  1    MFSRLFVKKHTPAMVAGSliflfiilltffWKKAELVNDSQIRVNFALGYIENILNQNNS  60
            MFSRLFVKKHTPAMVAGSLIFLFIILLTFFWKKAELVNDSQIRVNFALGYIENILNQNNS
Sbjct  1    MFSRLFVKKHTPAMVAGSLIFLFIILLTFFWKKAELVNDSQIRVNFALGYIENILNQNNS  60

Query  61   ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ  120
            ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ
Sbjct  61   ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ  120

Query  121  WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV  180
            WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV
Sbjct  121  WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV  180

Query  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL  240
            LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL
Sbjct  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL  240

Query  241  TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300
            TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP
Sbjct  241  TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300

Query  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM  360
            DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM
Sbjct  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM  360

Query  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420
            KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS
Sbjct  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420

Query  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC  480
            FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC
Sbjct  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC  480

Query  481  YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR  511
            YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR
Sbjct  481  YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR  511

2) ECS88_3319 in NC_011742


> DQ095216|54|G54|70608392|AAZ04464.1|Escherichia_coli_APEC_O1|+|54166..55701|-|ORF_55|conserved 
hypothetical protein
Length=511

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/511 (100%), Positives = 511/511 (100%), Gaps = 0/511 (0%)

Query  1    MFSRLFVKKHTPAMVAGSliflfiilltffWKKAELVNDSQIRVNFALGYIENILNQNNS  60
            MFSRLFVKKHTPAMVAGSLIFLFIILLTFFWKKAELVNDSQIRVNFALGYIENILNQNNS
Sbjct  1    MFSRLFVKKHTPAMVAGSLIFLFIILLTFFWKKAELVNDSQIRVNFALGYIENILNQNNS  60

Query  61   ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ  120
            ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ
Sbjct  61   ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ  120

Query  121  WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV  180
            WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV
Sbjct  121  WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV  180

Query  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL  240
            LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL
Sbjct  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL  240

Query  241  TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300
            TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP
Sbjct  241  TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300

Query  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM  360
            DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM
Sbjct  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM  360

Query  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420
            KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS
Sbjct  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420

Query  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC  480
            FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC
Sbjct  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC  480

Query  481  YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR  511
            YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR
Sbjct  481  YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR  511

3) ETEC_4447 in NC_017633


> DQ095216|54|G54|70608392|AAZ04464.1|Escherichia_coli_APEC_O1|+|54166..55701|-|ORF_55|conserved 
hypothetical protein
Length=511

 Score =  788 bits (2984),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/511 (97%), Positives = 504/511 (99%), Gaps = 0/511 (0%)

Query  1    MFSRLFVKKHTPAMVAGGlvflfivlltffWKKAELVNDSQTRVNFALGYIENILNQNNS  60
            MFSRLFVKKHTPAMVAG+L+FLFI+LLTFFWKKAELVNDSQ RVNFALGYIENILNQNNS
Sbjct  1    MFSRLFVKKHTPAMVAGSLIFLFIILLTFFWKKAELVNDSQIRVNFALGYIENILNQNNS  60

Query  61   ISPEAEHLLLNNCNADTQRELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKER  120
            IS EAEHLLLNNCNADTQ+ELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKE+
Sbjct  61   ISQEAEHLLLNNCNADTQHELSNLLLKRPQLRALSLARQEAVFCSTHPGLPVGPVAEKEQ  120

Query  121  WRHDMLIRFPEDTGTLPWILLKTPYKNGTVITATDYYFIQDIISVVHAVPAIQFRLGNTV  180
            WRHDMLIRFPEDTGTLPWILL+TPYKNGTVITATDYYFIQDIISVVHAVPAI+FRLGNTV
Sbjct  121  WRHDMLIRFPEDTGTLPWILLRTPYKNGTVITATDYYFIQDIISVVHAVPAIRFRLGNTV  180

Query  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYTIPVKMQLIYAWRQAWYMFPVAIFGGIL  240
            LSASGKNVTLLPDDSGIQKESHSKKYPFSLIY IPVKMQL YAW+QAWYM+PVAIFGGIL
Sbjct  181  LSASGKNVTLLPDDSGIQKESHSKKYPFSLIYIIPVKMQLTYAWKQAWYMIPVAIFGGIL  240

Query  241  TAFLLSRRRPSTPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300
            TAFLLSRRRPS+PLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP
Sbjct  241  TAFLLSRRRPSSPLDMLKNALAHGEFRPYFQPIISAKNHQLTGCEVLIRWHHPVSGIIPP  300

Query  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNPVAHFLPDQFHIGINISPAHFLSPGLEDSCI  360
            DQFIPLAESTGLIAPITQQLMSQVEHSLN+VAHFLP+QFHIGINISPAHFLSPGLEDSC+
Sbjct  301  DQFIPLAESTGLIAPITQQLMSQVEHSLNSVAHFLPNQFHIGINISPAHFLSPGLEDSCM  360

Query  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420
            KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS
Sbjct  361  KFLSTFPKGKVKLVLELTERNQLSVTAESKALFAKLHQQGVLFALDDFGTGYATHSYLQS  420

Query  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEGIETESQELFMTEKGSS  480
            FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAE IETESQELFMTEKGS 
Sbjct  421  FPVDYIKLDKGFVQMVGVDEISGHIVENVIELARRLGIDIIAEVIETESQELFMTEKGSC  480

Query  481  YLQGYRYAPPLPAEQFIAEWVYNSRNGKNQR  511
            YLQGYRYAPPLPAEQFIAEWVYNS NGKNQR
Sbjct  481  YLQGYRYAPPLPAEQFIAEWVYNSGNGKNQR  511

4) UMNK88_pEnt24 in NC_017640


> DQ095216|54|G54|70608392|AAZ04464.1|Escherichia_coli_APEC_O1|+|54166..55701|-|ORF_55|conserved 
hypothetical protein
Length=511

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/481 (87%), Positives = 447/481 (93%), Gaps = 0/481 (0%)

Query  18   WKKAELVNDSQIRVNFALGYIENLLDQNNSISSEAEHLLLNNCNADTQRKLSNLLLKRPQ  77
            WKKAELVNDSQIRVNFALGYIEN+L+QNNSIS EAEHLLLNNCNADTQ+ LSNLLLKRPQ
Sbjct  31   WKKAELVNDSQIRVNFALGYIENILNQNNSISQEAEHLLLNNCNADTQHELSNLLLKRPQ  90

Query  78   LRALSLTRQEAVFCSTHPGLPVGPIAEKERWQHDMLIRFPEDAGTLPWILLKVPYSNGTI  137
            LRALSL+RQEAVFCSTHPGLPVGP+AEKE+W+HDMLIRFPED+GTLPWILL+ PY NGT+
Sbjct  91   LRALSLARQEAVFCSTHPGLPVGPVAEKEQWRHDMLIRFPEDTGTLPWILLRTPYKNGTV  150

Query  138  ITVTDYYFIQDIISVISAVPAIKFRSGSTVLSVSGKNVSLHPDDSGIQKEIHSKKYPFSL  197
            IT TDYYFIQDIISV+ AVPAI+FR G+TVLS SGKNV+L PDDSGIQKE HSKKYPFSL
Sbjct  151  ITATDYYFIQDIISVVHAVPAIRFRLGNTVLSASGKNVTLLPDDSGIQKESHSKKYPFSL  210

Query  198  IYIIPVKMQLIYAWKHAWYMLPVAIFVGILTAFQLSRRRPSSLNDMLKNALTYGEFRPYF  257
            IYIIPVKMQL YAWK+AWYM+PVAIF GILTAF LSRRRPSS  DMLKNAL+ GEFRPYF
Sbjct  211  IYIIPVKMQLTYAWKQAWYMIPVAIFGGILTAFLLSRRRPSSPLDMLKNALAHGEFRPYF  270

Query  258  QPVISAKNHQLSGCEVLIRWHHPINGIIPPDQFIPLAESTGLIVPITQQLMSLVEHSLNS  317
            QP+ISAKNHQL+GCEVLIRWHHP++GIIPPDQFIPLAESTGLI PITQQLMS VEHSLNS
Sbjct  271  QPIISAKNHQLTGCEVLIRWHHPVSGIIPPDQFIPLAESTGLIAPITQQLMSQVEHSLNS  330

Query  318  VAHFLPDHFHIGINISPAHFLSLGLENDCRKFLSAFPKGKVKLVLELTERNQLSVTTESK  377
            VAHFLP++FHIGINISPAHFLS GLE+ C KFLS+FPKGKVKLVLELTERNQLSVT+ESK
Sbjct  331  VAHFLPNQFHIGINISPAHFLSPGLEDSCMKFLSTFPKGKVKLVLELTERNQLSVTAESK  390

Query  378  ALFAKLHQQGVQFALDDFGTGYATHSYLQSFPVDYIKLDKGFVQMVGVDEISEHIVENVI  437
            ALFAKLHQQGV FALDDFGTGYATHSYLQSFPVDYIKLDKGFVQMVGVDEIS HIVENVI
Sbjct  391  ALFAKLHQQGVLFALDDFGTGYATHSYLQSFPVDYIKLDKGFVQMVGVDEISGHIVENVI  450

Query  438  ALAGRLGIDIIAEGIETELQESVMIEKGISYLQGYRYAPPLPAEQFITEWIYGNKNSKSQ  497
             LA RLGIDIIAE IETE QE  M EKG  YLQGYRYAPPLPAEQFI+EW+Y + N+K+Q
Sbjct  451  ELARRLGIDIIAEVIETESQELFMTEKGSCYLQGYRYAPPLPAEQFIAEWVYNSGNGKNQ  510

Query  498  R  498
            R
Sbjct  511  R  511