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Homologs of topB gene of AY803022

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) NGK_1038
( YP_002001663.1 )

protein TopB

NC_011035
(Neisseria gonorrhoeae NCCP11945)

0.0

2) topB
( YP_005208735.1 )

protein TopB

NC_016830
(Pseudomonas fluorescens F113)

2e-130

3) NT01EI_0325
( YP_002931802.1 )

DNA topoisomerase 3 , putative

NC_012779
(Edwardsiella ictaluri 93-146)

8e-130

4) topB
( YP_003899109.1 )

DNA topoisomerase III

NC_014532
(Halomonas elongata DSM 2581)

7e-128

5) topB
( YP_048644.1 )

DNA topoisomerase III

NC_004547
(Pectobacterium atrosepticum SCRI1043)

6e-127

6) UMN179_00372
( YP_004419306.1 )

DNA topoisomerase III

NC_015460
(Gallibacterium anatis UMN179)

1e-126

7) Pfl01_3001
( YP_348730.1 )

DNA topoisomerase III

NC_007492
(Pseudomonas fluorescens Pf0-1)

1e-126

8) topB
( YP_006136654.1 )

DNA topoisomerase TopB

NC_017641
(Escherichia coli UMNK88)

3e-126

9) topB
( YP_003467455.1 )

DNA topoisomerase III

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-125

10) XBJ1_3377
( YP_003469259.1 )

DNA topoisomerase 3 (DNA topoisomerase III)

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-125

11) Tgr7_2823
( YP_002514883.1 )

DNA topoisomerase III

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

2e-125

12) Neut_0116
( YP_746369.1 )

DNA topoisomerase III

NC_008344
(Nitrosomonas eutropha C91)

4e-125

13) Alide2_1884
( YP_004387778.1 )

DNA topoisomerase III

NC_015422
(Alicycliphilus denitrificans K601)

1e-124

14) BN117_0555
( YP_006894604.1 )

DNA topoisomerase III

NC_018828
(Bordetella parapertussis Bpp5)

3e-124

15) topB
( YP_003739129.1 )

DNA topoisomerase

NC_014304
(Erwinia billingiae Eb661)

6e-124

16) Spro_4107
( YP_001480330.1 )

DNA topoisomerase III

NC_009832
(Serratia proteamaculans 568)

1e-123

17) CFSAN002050_22395
( YP_008262345.1 )

DNA topoisomerase III

NC_021818
(Salmonella enterica CFSAN002050)

7e-124

18) NH44784_010001
( YP_008028101.1 )

DNA topoisomerase III

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-123

19) topB2
( YP_584446.1 )

DNA topoisomerase III

NC_007973
(Cupriavidus metallidurans CH34)

2e-123

20) LF82_668
( YP_002559006.1 )

Topoisomerase B

NC_011993
(Escherichia coli LF82)

2e-123

21) NRG857_20800
( YP_006122502.1 )

DNA topoisomerase III

NC_017634
(Escherichia coli NRG 857C)

2e-123

22) Plav_3385
( YP_001414646.1 )

DNA topoisomerase III

NC_009719
(Parvibaculum lavamentivorans DS-1)

2e-123

23) PADK2_12250
( YP_006482435.1 )

DNA topoisomerase III

NC_018080
(Pseudomonas aeruginosa DK2)

2e-123

24) PLES_27011
( YP_002440294.1 )

DNA topoisomerase III

NC_011770
(Pseudomonas aeruginosa LESB58)

2e-123

25) topB
( YP_006184298.1 )

DNA topoisomerase III

NC_017671
(Stenotrophomonas maltophilia D457)

2e-123

26) topB
( YP_006373679.1 )

DNA topoisomerase III

NC_017958
(Tistrella mobilis KA081020-065)

2e-123

27) XC_2064
( YP_243144.1 )

DNA topoisomerase III

NC_007086
(Xanthomonas campestris 8004)

3e-123

28) NH44784_010791
( YP_008028179.1 )

DNA topoisomerase III

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-123

29) topA
( YP_007649647.1 )

Topoisomerase IA

NC_020815
(Xanthomonas citri Aw12879)

4e-123

30) xccb100_2412
( YP_001903817.1 )

DNA topoisomerase III

NC_010688
(Xanthomonas campestris B100)

5e-123

31) B5T_02138
( YP_006820755.1 )

DNA topoisomerase III

NC_018691
(Alcanivorax dieselolei B5)

7e-123

32) topB
( YP_364018.1 )

DNA topoisomerase III

NC_007508
(Xanthomonas campestris 85-10)

1e-122

33) topB
( YP_002871597.1 )

DNA topoisomerase III

NC_012660
(Pseudomonas fluorescens SBW25)

2e-122

34) SerAS9_0272
( YP_004503695.1 )

DNA topoisomerase III

NC_015567
(Serratia plymuthica AS9)

2e-122

35) SerAS12_0272
( YP_004498743.1 )

DNA topoisomerase III

NC_015566
(Serratia sp. AS12)

2e-122

36) SerAS13_0271
( YP_006023158.1 )

DNA topoisomerase III

NC_017573
(Serratia sp. AS13)

2e-122

37) XNC1_3450
( YP_003713608.1 )

DNA topoisomerase III

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-122

38) topB4
( YP_001632921.1 )

DNA topoisomerase III

NC_010170
(Bordetella petrii DSM 12804)

5e-122

39) Daci_4150
( YP_001565166.1 )

DNA topoisomerase III

NC_010002
(Delftia acidovorans SPH-1)

5e-122

40) PSTAA_1279
( YP_005937931.1 )

DNA topoisomerase III

NC_017532
(Pseudomonas stutzeri DSM 4166)

5e-122

41) Spro_0310
( YP_001476548.1 )

DNA topoisomerase III

NC_009832
(Serratia proteamaculans 568)

7e-122

42) XNC1_3649
( YP_003713781.1 )

DNA topoisomerase III

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-121

43) topB3
( YP_001630053.1 )

DNA topoisomerase III

NC_010170
(Bordetella petrii DSM 12804)

5e-121

44) plu1037
( NP_928366.1 )

DNA topoisomerase III

NC_005126
(Photorhabdus luminescens TTO1)

7e-121

45) YPZ3_0299
( YP_003566471.1 )

DNA topoisomerase III

NC_014029
(Yersinia pestis Z176003)

2e-120

46) NH44784_008881
( YP_008027990.1 )

DNA topoisomerase III

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

1e-119

47) PputW619_3423
( YP_001750276.1 )

DNA topoisomerase III

NC_010501
(Pseudomonas putida W619)

2e-119

48) Alide_2714
( YP_004127332.1 )

DNA topoisomerase iii

NC_014910
(Alicycliphilus denitrificans BC)

2e-119

49) Pput_1814
( YP_001267151.1 )

DNA topoisomerase III

NC_009512
(Pseudomonas putida F1)

3e-119

50) XNC1_3538
( YP_003713679.1 )

DNA topoisomerase III

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-119

51) L483_22505
( YP_008096265.1 )

DNA topoisomerase III

NC_021491
(Pseudomonas putida H8234)

4e-119

52) YSA_08732
( YP_006388612.1 )

DNA topoisomerase III

NC_017986
(Pseudomonas putida ND6)

5e-119

53) topB
( NP_746149.1 )

DNA topoisomerase III

NC_002947
(Pseudomonas putida KT2440)

1e-118

54) topB
( YP_005929663.1 )

protein TopB

NC_017530
(Pseudomonas putida BIRD-1)

9e-119

55) Hneap_1612
( YP_003263487.1 )

DNA topoisomerase III

NC_013422
(Halothiobacillus neapolitanus c2)

2e-118

56) PputGB1_3624
( YP_001669851.1 )

DNA topoisomerase III

NC_010322
(Pseudomonas putida GB-1)

2e-118

57) Sbal117_4706
( YP_006039708.1 )

DNA topoisomerase III

NC_017580
(Shewanella baltica OS117)

2e-118

58) DSC_04250
( YP_004929544.1 )

DNA topoisomerase III

NC_016147
(Pseudoxanthomonas spadix BD-a59)

3e-118

59) PPS_3429
( YP_004702856.1 )

DNA topoisomerase III

NC_015733
(Pseudomonas putida S16)

6e-118

60) B479_17060
( YP_007230247.1 )

DNA topoisomerase III

NC_019905
(Pseudomonas putida PC9)

8e-118

61) Psyr_1473
( YP_234561.1 )

DNA topoisomerase III

NC_007005
(Pseudomonas syringae B728a)

2e-117

62) Sbal_4425
( YP_001041729.1 )

DNA topoisomerase III

NC_009036
(Shewanella baltica OS155)

3e-117

63) topB
( YP_607819.1 )

DNA topoisomerase III

NC_008027
(Pseudomonas entomophila L48)

4e-117

64) Sbal117_4782
( YP_006035239.1 )

DNA topoisomerase III

NC_017578
(Shewanella baltica OS117)

6e-117

65) AvCA_27190
( YP_007893678.1 )

DNA topoisomerase III

NC_021149
(Azotobacter vinelandii CA)

7e-117

66) AvCA6_27190
( YP_007898727.1 )

DNA topoisomerase III

NC_021150
(Azotobacter vinelandii CA6)

7e-117

67) Avin_27190
( YP_002799868.1 )

DNA topoisomerase III

NC_012560
(Azotobacter vinelandii DJ)

7e-117

68) Ser39006_1476
( YP_008521858.1 )

DNA topoisomerase III

NC_022268
(Serratia sp. ATCC 39006)

8e-117

69) PSJM300_13290
( YP_006525078.1 )

DNA topoisomerase III

NC_018177
(Pseudomonas stutzeri DSM 10701)

1e-116

70) topB
( YP_008112771.1 )

DNA topoisomerase III

NC_021505
(Pseudomonas putida NBRC 14164)

1e-115

71) ECL_00407
( YP_003610922.1 )

DNA topoisomerase III

NC_014121
(Enterobacter cloacae ATCC 13047)

3e-115

72) Psefu_3770
( YP_004475821.1 )

DNA topoisomerase III

NC_015556
(Pseudomonas fulva 12-X)

9e-114

73) topB
( YP_002871773.1 )

DNA topoisomerase III

NC_012660
(Pseudomonas fluorescens SBW25)

1e-113

74) A458_15255
( YP_006458701.1 )

DNA topoisomerase III

NC_018028
(Pseudomonas stutzeri CCUG 29243)

1e-113

75) topB
( YP_007030014.1 )

DNA topoisomerase III

NC_019670
(Pseudomonas sp. UW4)

2e-113

76) Psest_1383
( YP_007239570.1 )

DNA topoisomerase III

NC_019936
(Pseudomonas stutzeri RCH2)

5e-113

77) Pfl01_3364
( YP_349093.1 )

DNA topoisomerase III

NC_007492
(Pseudomonas fluorescens Pf0-1)

6e-113

78) topB_1
( YP_006323613.1 )

DNA topoisomerase III

NC_017911
(Pseudomonas fluorescens A506)

3e-112

79) topB
( YP_004715325.1 )

DNA topoisomerase III

NC_015740
(Pseudomonas stutzeri ATCC 17588)

5e-111

80) PSEBR_a1917
( YP_004353144.1 )

DNA topoisomerase III

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-110

81) PSF113_3218
( YP_005208612.1 )

DNA topoisomerase III

NC_016830
(Pseudomonas fluorescens F113)

4e-110

82) Psyr_2244
( YP_235325.1 )

DNA topoisomerase III

NC_007005
(Pseudomonas syringae B728a)

8e-109

83) topB
( NP_792290.1 )

DNA topoisomerase III

NC_004578
(Pseudomonas syringae DC3000)

4e-108

84) topB1
( YP_275124.1 )

DNA topoisomerase III

NC_005773
(Pseudomonas syringae 1448A)

1e-107

85) topB
( YP_005939698.1 )

DNA topoisomerase III

NC_017532
(Pseudomonas stutzeri DSM 4166)

4e-107

86) H045_06300
( YP_007396830.1 )

DNA topoisomerase III

NC_020209
(Pseudomonas poae RE*1-1-14)

2e-102

87) topB
( YP_001173401.1 )

DNA topoisomerase III

NC_009434
(Pseudomonas stutzeri A1501)

9e-101

• Sequence Alignments

1) NGK_1038 in NC_011035


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score = 1103 bits (4183),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 678/679 (99%), Positives = 679/679 (100%), Gaps = 0/679 (0%)

Query  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60
            MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120
            GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180
            YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240
            SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKLG  300
            ENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKLG
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKLG  300

Query  301  LSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKAD  360
            LSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKAD
Sbjct  301  LSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKAD  360

Query  361  PERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEYD  420
            PERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEYD
Sbjct  361  PERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEYD  420

Query  421  STVVEVEACSHLFKASSQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSFN  480
            STVVEVEACSHLFKAS+QSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSFN
Sbjct  421  STVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSFN  480

Query  481  PETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRLF  540
            PETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRLF
Sbjct  481  PETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRLF  540

Query  541  EMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQQ  600
            EMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQQ
Sbjct  541  EMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQQ  600

Query  601  KVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENPD  660
            KVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENPD
Sbjct  601  KVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENPD  660

Query  661  KRYWGCSRFPECKHFEWVK  679
            KRYWGCSRFPECKHFEWVK
Sbjct  661  KRYWGCSRFPECKHFEWVK  679

2) topB in NC_016830


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  459 bits (1730),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 275/675 (41%), Positives = 435/675 (65%), Gaps = 33/675 (4%)

Query  1    MRLFLCEKPSQGRDIAKVLGA-SRRGDGCLIGRETTVTWCIGHLLETAPPEAYGDQYKTW  59
            MRLFLCEKPSQ++DI+KVLG  + R DG +   +T VTW +GH+L  A+P+AYG+QY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LDHLPIIPAQWRVEVKPKTVAQFKIIKHLLSEATTVVIATDADREGEMIARELLELCN  118
            + +  LPI+P  W+++V PK   QFK+IK LL+ A  VVIATDADREGE+IARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARSRADWLIGMNLSRLFTLLG  178
            YR  + R+W S+L+  S++KALSS+ ++++   LY+++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RRAGYG--AVLSVGRVQTPTLRLVVERDRAIASFVSVPYWVVNAHLSSMGQQPFIASWIP  236
              AGYG   +LS+GR+QTPTL+LVV+RD+ I +FV+  Y  ++ ++ + ++  F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  PSSGRDEAGRClqqalasqalqaisssKTATVVSLRTEHLREAPPLPFDLSTLQEVCSRK  296
            P + R+  G C +       ++ +  S T+ V++   E+   +PPLP+ LS+LQ   ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  LGLGAQETLNIAQALYETHKATSYPRSDCRYLPESMFNEVAAVFDALLRMDPALRPALGS  356
            LGL+A   L+IAQ+LYE  K TSYPR+ CRYLP S  +EV  VF A+  +D ++ + +  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  IDQSLRSRAWNDAKVT--AHHGIIPTTEPA-NLGRMSEQERQVYELIRSHYLAQFLPHHE  413
             D   +SR WND +V   +HH+IIPT  +  +L+ +  +E  VY +IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  FDRTEVELECSAERLTAVGKQILVQGWKGLLSDNPDDDEPSQKSQVLPALQQGRQCAVDD  473
            +D T VE+E  ++ + A  +  ++ GWK LL+ +  +++  + +  LP L+   +     
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  474  VELKSMRTAAPKSLTEGDLIKAM---KNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKG  530
             +  + +T++P  +TE+ L+  M   K+  K V+D ++++ L+ T G+GTEATRA II  
Sbjct  479  FNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDR  538

Query  531  LIDRGYLLKKKRALMASATAHTLIEAVPAAVADPGMTAIWEQALDEIEAGRLSLDAFVAK  590
            L++ GY+ KK+  + A+  ++ LI  +P+ +ADP  TA WE AL  IEAG+L+L  F+A 
Sbjct  539  LFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAY  598

Query  591  QAHWITQLIA-----------------NCGALTLSVPVEAGPVCPICNASMLRRKG-KSG  632
            Q   IT+L++                 + G+   +V+ + + VCP C+ + LR++G K  
Sbjct  599  QQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKEN  658

Query  633  P---FWSCSHYPDCK  644
            P   +W+CS++P+CK
Sbjct  659  PDKRYWGCSRFPECK  673

3) NT01EI_0325 in NC_012779


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  457 bits (1722),  Expect = 8e-130, Method: Compositional matrix adjust.
 Identities = 284/675 (43%), Positives = 432/675 (64%), Gaps = 33/675 (4%)

Query  1    MQLYLCEKPSQAKDIARVLGI-SKRGQGFISADNITVTWAIGHLLEQASPDAYGEQFGKP  59
            M+L+LCEKPSQAKDI++VLG+ + R +G++  ++  VTWA+GH+L QA+PDAYGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRVDVLPVLPDNWKMVVKPQTRDQFTVISKLLKQAGEVIIATDADREGEVIARELLAYCG  119
              +  LP+LP+ W+M V P+   QF VI  LL +A+EV+IATDADREGEVIARE+L YCG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  YRGAVRRLWLSALDEASIREALAGILPGENTAKLYDAGLGRSRADWLIGMNLTRLYTLIA  179
            YR  + R+W S+LD  S++ AL++I+PG +  +LY+AGL+R+RADWL+GMNL+R YT   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  180  RES-GVSDVLSVGRVQTPTLAIVVNRDKEIADFVPVPWWQVQVLLEK-DGVRFRATWQAA  237
              + G  ++LS+GR+QTPTL +VV+RDKEI  FVP     + V +E  D   F + WQ +
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  238  AQYCDDEKRCVNKQAANA-VGQLCQQQKGATVLEVSQKRDKTPAPLCFDLGTLQLVCSRK  296
             +  + +  C N +A +A V QL  ++  + V+  ++ R  TP+PL + L++LQ   ++K
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQL--EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  FGMGAKETLAVAQSLYETHKATTYPRTDCGYLPTSMQKEIPEVMGSVAKSDPSVAPVLAQ  356
            +G++A   L +AQ+LYE  K T+YPRT C YLP S   E+ +V +++   D S+ +V+ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRGFVSRVWNDKKIT--AHHAIIPTRQA-FDLSRLSADELKVYQLIRQHYFAQFLPLQE  413
             D    SRVWND+++   +HHAIIPT+ + FDLS L  +EL VY++IR++Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  SDVTDASFNIGGQLFLAKGKVNVITGWTCLFQKEIQEDPPEDDDMALPALNKGDSCIVNG  473
             D T    +  ++LF A  +  VI+GW  L+ K++ E+   D++ ALP L+  D     +
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  474  ASVGDKVTSPPKPFTEGTLIAAMKNAASF---VSDPKLKKVLRDNAGLGTEATRAGVLET  530
             +   K T+PP  FTE++L+  M+    F   V D +++K+L+   GLGTEATRA +++ 
Sbjct  479  FNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDR  538

Query  531  LFSRHYLEKKGKHIHATLLARELIAALPETLTSPGMTALWEQALDDIAQGKMSLDTFIQK  590
            LF   Y+EKK   I AT  +R+LIA +P  ++ P  TA WE AL +I  GK++L  F+  
Sbjct  539  LFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAY  598

Query  591  QLQWTRHLVDKGRADTVKITAPVTPP-----------------CPVCKGLTRKRKGKNGD  633
            Q +   +LV++++ D+V  + P                     CP CK    +++G + +
Sbjct  599  QQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKEN  658

Query  634  ----FWGCIRYPECN  644
                +WGC R+PEC+
Sbjct  659  PDKRYWGCSRFPECK  673

4) topB in NC_014532


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  450 bits (1697),  Expect = 7e-128, Method: Compositional matrix adjust.
 Identities = 278/682 (41%), Positives = 436/682 (64%), Gaps = 42/682 (6%)

Query  3    RLFLCEKPTQARDIAKVLGA-SEKGNGCLKGRGITVTWGFGHLLEQANPEAYDPALKRWS  61
            RLFLCEKP+QA+DI+KVLG  + + +G ++  +  VTW+FGH+L QA P+AY+      +
Sbjct  2    RLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADFG  61

Query  62   -MESLPILPTQWKLEVKPSAKKQFTVVKKLLSSASEVVIATDADREGEMIAREILEACQF  120
             + +LPILP  W+++V P   KQF V+K LL+ A EVVIATDADREGE+IAREIL+ C +
Sbjct  62   NISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCGY  121

Query  121  SGGVSRLWLPALDEASIRKALGDIRPGESTRLLYHAALGRSRADWLVGMNLTRAFTMRAK  180
               +SR+W ++LD  S++KAL+ I PG     LY+A+L+R+RADWLVGMNL+RA+T  A 
Sbjct  122  RKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-AY  180

Query  181  QLGY--DLLLSVGRVQTPVLKLVVDRDREIANFVPKPFWEVVAVFQ-AEGGTFQAKWQPA  237
              GY  + +LS+GR+QTP LKLVV+RD+EI  FVP  +  +   F+ A+ + F + WQ +
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  238  DDDVLDESGRCINQSAAQAVVARCQGLPGQVTTLETTRKREAPPLAMDLGTLQQTCSKRW  297
            ++   +  G C N  A +A+V + +   G+V T +  RK  +PPL+  L++LQ+  +K+ 
Sbjct  241  ENWR-NTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKL  299

Query  298  GYGAQQVLDIAQALYETHKATTYPRTDCRYLPLSQLDDAQQVVTALLTSDGELAPVVQSL  357
            G +A +VL IAQ+LYE  K T+YPRT CRYLP SQ+ + ++V +A+ T D  + +V++  
Sbjct  300  GLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKA  359

Query  358  DLTRKSRVWNDSKIT--AHHGIIPT-TSPCDTSKMSEAEWNVYDLVRRHYLAQFLPPHEY  414
            D  R+SRVWND+++   +HH+IIPT +S  D S +   E  VY ++R +Y+AQF P  EY
Sbjct  360  DPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEY  419

Query  415  DHTDVALEVAGERFATTGRQVQVEGWKVLF-RNVQQDDAAGDEATAKTSSQALPPLQAHA  473
            D T V +E  ++ F ++ +   + GWKVL+ ++V ++D  ++       + ALP L+ + 
Sbjct  420  DSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDE-------GPALPHLKVND  472

Query  474  NVPQSSLDLVSKTTTPPKPFAEGTLIGAMKNAARF---EPNPKLKARLKESAGIGTEATR  530
            +V   S++  +K TTPP  F+E++L++ M+    F     + +++  LK + G+GTEATR
Sbjct  473  EVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATR  532

Query  531  AGIIETLLKRKFLTKKGRAIVATATGRQLIDALPEVVTNPGMTALWEQALDSVAAGELSL  590
            A II+ L+   ++ KK   I AT  GR+LI  +P ++++P  TA WE AL ++ AG L+L
Sbjct  533  ATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTL  592

Query  591  EDFMAKQQTLVERLIEQAKSATINLPQEPAKSKA---------------CPECGAPMKKR  635
             +FMA QQ ++  L+ QAK  ++  ++ P ++ +               CP C    + R
Sbjct  593  AEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEG-RLR  651

Query  636  KNDYGS-----FWGCTKYPDCK  652
            + ++       +WGC+++P+CK
Sbjct  652  QRGFKENPDKRYWGCSRFPECK  673

5) topB in NC_004547


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  448 bits (1686),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 283/683 (42%), Positives = 434/683 (64%), Gaps = 46/683 (6%)

Query  2    MRLFLCEKPSQGRDIARFIGA-TQRGKGFLSGTGTVVTWAFGHLLEVASPEEYGAQFGKP  60
            MRLFLCEKPSQ++DI++ +G    R  G++   +T+VTWAFGH+L  A+P+ YG Q++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  61   WRMDVLPILPTEWKMVVKQSSADQFAVISRLLKQADEVVIATDADREGEVLARELLDYCH  120
              +  LPILP  W+M V    + QF VI  LL +ADEVVIATDADREGEV+ARE+LDYC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  121  FTGNVKRLWLSALDDASIRKGLDNLLPGEKTVRLYYAGMGRSKADWLIGMNLTRIYTLK-  179
            +  ++ R+W S+LD  S++K+L +++PG     LY AG++R++ADWL+GMNL+R YT   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  180  ASEQGIDELLSIGRVQTPTLALVVQRDSDIENFSPKPYWQVFADIEKAGMT-FRA-----  233
            ++  G +++LSIGR+QTPTL LVVQRD +I+ F P  Y  +  D+E A+ + F +     
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  234  -QWVPAAGYCDDEKRCIQHNAALAVEQLCKQTATTSVVDVLLKREKTPAPLCFSLSVLQK  292
             +W  + GYC +    ++   AL V QL  + +T  V+     R  TP+PL +SLS LQK
Sbjct  241  ENWRNTDGYCTN----LEAVKAL-VKQL--EKSTGKVITSNKERKSTPPPLPYSLSALQK  293

Query  293  ACSDKWGMIAQKVLEIAQSLYEVHKATTYPRTDCGYLPESMKGEVSDVLSAILQSDPAAT  352
              + K G+ A KVL IAQ+LYE  K T+YPRT C YLP S  +EV DV++AI   D +  
Sbjct  294  EAGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSML  353

Query  353  SLIKDADRSFVSRIWNDKKIS--AHHAIIPTKQP-FDISKLSDDELNVYQLIRLHYFAQF  409
            S+I  AD    SR+WND++++  +HHAIIPTK + FD+S L  +EL VY++IR +Y+AQF
Sbjct  354  SVIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQF  413

Query  410  FPLHESDVTDVTFNLGGQLFKTRGRVSVVIGWKKLFFNDKEPDIQSDENGSQGSLPVLHN  469
            +P  E D T V  +  ++LFK+  + +V+ GWK L+ +D    +++D+ +   +LP L  
Sbjct  414  YPDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKD---VFEGDQIDEGPALPHLKV  470

Query  470  GDICNVLDCEVKAQQTKPPSRFTDGTLIDAMKNSASF---ISDPTLKKILRDNAGLGTEA  526
             D  + L  +  +++T PP+RFT+++L+D M+    F   + D  ++KIL+   GLGTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  527  TRANILDVLFKRNYLKRREKFIYSTQLARELISQLPEALTNPGMTALWEQALDDVAEGRM  586
            TRA I+D LF   Y+ ++   IY+T+ +R+LI+++P  +++P  TA WE AL ++  G++
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  587  SLDAFLQKQKEWTLRLVDRGRQQAIKLTAPVSP-----------------LCPQC-GGIM  628
            +L  F+  Q+     LV++++++A+  + P                    +CP C  G +
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  629  RKR---NSDNGVFWGCVKYPLCK  648
            R+R   ++ +  +WGC ++P CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

6) UMN179_00372 in NC_015460


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  447 bits (1683),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 275/679 (41%), Positives = 439/679 (65%), Gaps = 42/679 (6%)

Query  1    MKLILCEKPSQGRDIGKFIGA-TKRGEGYLSSPDQQTFVTWGIGHLVEQAEPQDYDESYK  59
            M+L+LCEKPSQ++DIGK +G    R +GY+ + D  T+VTW++GH++ QA P+ Y+E Y 
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGD--TIVTWAFGHILTQAAPDAYGEQYA  58

Query  60   KW-IFDNLPIIPDKWIMKVKKETAKQYKIVMGLIKKANHIVIATDPDREGEVIARELLDM  118
                +  LPI+P+ W M+V    +KQ+K++ +L+ KA+++VIATD+DREGEVIARE+LD 
Sbjct  59   DFGNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDY  118

Query  119  ANYKGKVQRLWLSALDDGSIRKALANLKSDAETKPLYAAGLARGRADWLVGMNLTRLFTL  178
              Y+ K+ R+W S+LD  S++KAL+++ ++ +   LY AGLARGRADWLVGMNL+R +T 
Sbjct  119  CGYRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-  177

Query  179  IAQKQGY--QGVMSVGRVQSPTLAIVVQRDREIENFVSKPFYRLKVNLDG-----FCAYW  231
             A   GY  + ++S+GR+Q+PTL +VVQRD+EI+ FV+  +Y L V+++      F + W
Sbjct  178  AAYSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW  237

Query  232  QPTESVCDDEGRCIDYSVITQVQRQLSKTL-KIDNIETKRKKEMPPLAFDLGTLQQTCSR  290
            Q  E+  + +G C +   +  + +QL K+  K+   +  RK   PPL++ L++LQ+  ++
Sbjct  238  QVPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGK  297

Query  291  LFGMGAAQVLKIAQSLYETHKATTYPRTDCGYLPESMIDEIPLVLKAVSESDPQVRNIVA  350
             +G++A++VLKIAQ+LYE  K T+YPRT C YLP S + E+  V+ A+   D  + +++ 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  351  KLDISLRSRVWNDSKIT--AHHGIIPT-TQKVDLSKMSDDELKVYQLVRKHYFAQFLPLY  407
            K D   +SRVWND+++   +HH+IIPT + + DLS +  +EL VY+++R +Y+AQF P +
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  408  EEDNTSVLLSGNEQTFVSKGKQVIKIGWKSLFQQD---RNEDDEEQSLPSLRQGQSCNVV  464
            E D+T V + +  + F +  +  +  GWK L+ +D    ++ DE  +LP L+  +  + +
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  465  DSEVLTLKTTPPKHYTEGTLIAAMKNAARF---VTDARLKQRLRETEGLGTEATRAEVIE  521
              +  T KTTPP ++TE++L+  M+    F   V D ++++ L+ TEGLGTEATRA +I+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  522  TLFKRGYLEKKRKEIVATSAGRSLIDGLPDIIKDPGMTALWEQALNDIASGKMLLQDFMA  581
             LF  GY+EKKR  I AT  GR+LI  +P +I DP  TA WE AL +I +GK+ L +FMA
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  582  KQNQFISHVV----KSMIGSGSVAIQVKA------------EKICPKCGAAMRRRKGKNG  625
             Q++ I+++V    K  +G +  + Q  +            + +CP C  +  R++G + 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  626  D----FWGCSNYPTCTAIE  640
            +    +WGCS +P C  +E
Sbjct  658  NPDKRYWGCSRFPECKHFE  676

7) Pfl01_3001 in NC_007492


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  447 bits (1683),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 275/675 (41%), Positives = 425/675 (63%), Gaps = 34/675 (5%)

Query  1    MRLFLCEKPSQGRDIAKVLGA-TRRGDGCLIGTDSTVTWCIGHLLETAPPEAYGAQYKSW  59
            MRLFLCEKPSQ++DI+KVLG    R DG +   D+ VTW +GH+L  A+P+AYG QY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LDHLPIIPAQWQVEVKSKTAAQFKIIKRLLSEASSVVIATDADREGEMIARELLELCR  118
            + +  LPI+P  WQ++V +K + QFK+IK LL+ A  VVIATDADREGE+IARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVLRLWLSALNEASIRKALSSLKSGQVTFPLYHSALARSRADWLIGMNLSRLFTLLG  178
            YR  + R+W S+L+  S++KALSS+ +G+    LY+++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RRAGY--DGVLSVGRVQTPTLRLVVDRDRAIASFVPVPYWTVDVHLSSMGQR-FIASWLP  235
              AGY  + +LS+GR+QTPTL+LVV+RD+ I +FVP  Y T+ V++ + ++  F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PRSGRDEAGRCLQQALAHHAVQTITGEKSATVLSLQTEQLREPPPLPFDLSTLQEVCSRK  295
            P + R+  G C +       V+ +    ++ V++ + E+   PPPLP+ LS+LQ   ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGVQETLNIAQALYETHKATTYPRSDCRYLPESMFNEAPAVLDALLKTDPALRPAFGS  355
            LGL+    L+IAQ+LYE  K T+YPR+ CRYLP S  +E   V+ A+   D ++ + +  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSLRARVWNNAKVT--AHHGIIPTTEPA-NLVRMSEQERQVYELIRSHYLAQFLPHHE  412
             D   ++RVWN+ +V   +HH+IIPT  +  +L  +  +E  VY +IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTQVELECSKERLTAVGKQILIQGWKGLLTENTEDDEPSQKHQVLPVLQQGTQCAVND  472
            +D T VE+E   + + A  +  +I GWK LL  +  +++  +    LP L+   +     
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  473  VELKSMRTVAPKPLTEGDLIKAM---KNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKG  529
             +  + +T +P  +TE+ L+  M   K+  K V+D ++++ L+ T G+GTEATRA II  
Sbjct  479  FNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDR  538

Query  530  LVDRGYLLKKKRALMASAAAHTLIEAAPTAVADPGMTAIWEQALDEIEAGRLTLDAFVAK  589
            L + GY+ KK+  + A+  ++ LI   PT +ADP  TA WE AL  IEAG+LTL  F+A 
Sbjct  539  LFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAY  598

Query  590  QANWIAQLVAHYRSHTL-----------------AIAVETSPSCPMCNASMLRRKG-KSG  631
            Q + I++LV++ + +++                 A+A +    CP C+ + LR++G K  
Sbjct  599  QQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKEN  658

Query  632  P---FWSCSCYPDCK  643
            P   +W+CS +P+CK
Sbjct  659  PDKRYWGCSRFPECK  673

8) topB in NC_017641


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  445 bits (1678),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 278/678 (42%), Positives = 435/678 (65%), Gaps = 35/678 (5%)

Query  1    MQLYLCEKPSQARDIARVLG-LSGRGEGCIEGDTVTVTWAVGHLLELAAPEAYGEQFGVP  59
            M+L+LCEKPSQA+DI++VLG L+GR +G ++ +   VTWA GH+L  AAP+AYGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMESLPVLPEKWQMTVKPQTKSQFTVISRLLKRASEVVIATDADREGEVIARELLTYCR  119
              + +LP+LPE WQM V P+   QF VI  LL +A EVVIATDADREGEVIARE+L YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  YRGPVRRLWLSALDEASVREALANILPGEQTARLYDAGLARGQADWLIGMNLTRLYTLKA  179
            YR  + R+W S+LD  SV+ AL++I+PG +   LY+AGLARG+ADWL+GMNL+R YT   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  180  RVS-GIPDVLSVGRVQTPTLAMVVRRDQEIAGFVPRPWWQVFVGLEKDGIR-FRAVWVAA  237
              + G  ++LS+GR+QTPTL +VV+RD+EI  FVP     + V++E  +   F ++W  +
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  238  EQYCDEEKRCVNVQAARAVLQLCQQTPSAVVHEVTRKREKTPAPLCFSLGTLQEACSRKF  297
            E+  + +  C N++A +A+++  +++ + V+    + R  TP+PL +SL++LQ   ++K+
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGKKL  299

Query  298  GMGAQTVLNIAQSLYETHKATTYPRTDCGYLPESMQQESREVLAAMARSDPALTPVLAQL  357
            G++A  VL+IAQ+LYE  K T+YPRT C YLP S   E ++V+AA+   D ++ +V+ + 
Sbjct  300  GLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKA  359

Query  358  DPGFVSRIWNDKKIT--AHHAIIPTRQV-FDIRALSEDELKVYLLIRQHYLAQFLPLQES  414
            DP   SR+WND+++   +HHAIIPT+   FD+  L  +EL VY +IR++Y+AQF P  E 
Sbjct  360  DPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEY  419

Query  415  DITDATLTLGGQRFRARGKVNVVTGWRGLFSgeaaedaegedeQTTEMALPALERGEHCR  474
            D T   +   ++ F+A  +  V++GW+ L++ +  E+ +         ALP L   ++  
Sbjct  420  DSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQI----DEGPALPHLKVNDEVD  475

Query  475  ISGSELKGRMTSPPAPFTEGTLIAAM---KNAASQVSDPKLKKVLRENAGLGTEATRAGV  531
              + +   + T+PP+ FTE++L+  M   K+   +V D +++K+L+   GLGTEATRA +
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  532  LEVLFARQYLEKSGKHIRSTQRGRELTAALPEALTSPGMTALWEQALDDIAQGRMSLDTF  591
            ++ LF   Y+EK    I +T++GR+L A +P  ++ P  TA WE AL +I  G+++L  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  592  MGRQQQWVRHLVSSGREQPFSMTVPVMPP-----------------CPLC-QGPTRQRKG  633
            M+ QQ+ + +LV+ ++ ++ + + P                     CP C +G  RQR  
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGF  655

Query  634  KHGL---FRSCQRYPECK  648
            K+     +++C R+PECK
Sbjct  656  KENPDKRYWGCSRFPECK  673

9) topB in NC_013892


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  443 bits (1670),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 273/676 (41%), Positives = 442/676 (66%), Gaps = 36/676 (5%)

Query  1    MPLYLCEKPSQARDIARVLGV-KQRGQGYLFGDSITVTWAIGHLLEMAAPEHYGEQFGPP  59
            M L+LCEKPSQA+DI++VLGV   R +GY+  +   VTWA+GH+L  AAP+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMEPLPVLPVQWQWTVKKETADQFAVIRQLLKQADEVIIATDADREGEVIARELLEYCR  119
              + +LP+LP  WQ  V    + QF VI+ LL +ADEV+IATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVRRLWLSALDETSIRQALAAILLGEQTEPLWQAGLGRARADWLMGINLTRLYTLKA  179
            +   + R+W S+LD  S+++AL++I+ G + E L QAGL+R+RADWL+G+NL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  QAQGFG--EVLSIGRVQTPTLALVVNRDNDIARFEPKPYWQVMAALQKDDIS-FRVKWLP  236
             + G+G  ++LSIGR+QTPTL LVV+RD++I  F P  Y  +   ++  D S F   W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW-Q  238

Query  237  APDD-CDEEKRCIREDIAQSVVQRCQQAQDAVVTELTQKREKTPPPLCFDLGMLQQVASR  295
             P++  + +  C   +  +++V++ +++ + V+T   + R  TPPPL + L+ LQ+ A++
Sbjct  239  VPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  QWGMGAGQVLTIAQSLYEIHKATTYPRTDCGYLPVSMREDIPAVFTALTRTDPAMNAIIS  355
            + G++A++VL IAQ+LYE  K T+YPRT C YLP S   ++  VF+A+   D +M ++I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  QLDASTLSRVWNDSQIT--AHHAIIPTRHT-FDMTKLTADELKIYQLIRHYYLAQFLPVQ  412
            + D+   SRVWND+Q+   +HHAIIPT+ + FD++ L  +EL +Y++IR+ Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ETDVTDVTFTIGGQVFQAKGRVSVVTGWKTLFADEK-QVQEQDDNTALPALKKEEICPVL  471
            E D T V     +++F+A  + +V++GWK L++ +  + ++ D+  ALP LK ++    L
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  472  RAEIQPRQTRPPAPFTEGTLIAAMKNAAAF---IHDPQLKKVLRENAGLGTEATRAGIIE  528
              + + ++T PP+ FTE++L+  M+    F   ++D Q++K+L+   GLGTEATRA II+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  529  ALFNRQLLARKKKNLHATPLAQELIAGLPDVLTHPGMTALWEQSLDDIARGRATLDGFMQ  588
             LF+   + +K+ ++ AT  +++LIA +P ++++P  TA WE +L +I  G+ TL  FM 
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  589  KQAQWLAHLVEKGKTQPI---------------RFTLPKTPA--CPRC-GGPMQKRAGKT  630
             Q + +++LV ++K +++               + ++++     CP C  G +++R+ K 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  631  TP---FWGCTRYPACK  643
             P   +WGC+R+P CK
Sbjct  658  NPDKRYWGCSRFPECK  673

10) XBJ1_3377 in NC_013892


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  443 bits (1670),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 273/676 (41%), Positives = 442/676 (66%), Gaps = 36/676 (5%)

Query  1    MPLYLCEKPSQARDIARVLGV-KQRGQGYLFGDSITVTWAIGHLLEMAAPEHYGEQFGPP  59
            M L+LCEKPSQA+DI++VLGV   R +GY+  +   VTWA+GH+L  AAP+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMEPLPVLPVQWQWTVKKETADQFAVIRQLLKQADEVIIATDADREGEVIARELLEYCR  119
              + +LP+LP  WQ  V    + QF VI+ LL +ADEV+IATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVRRLWLSALDETSIRQALAAILLGEQTEPLWQAGLGRARADWLMGINLTRLYTLKA  179
            +   + R+W S+LD  S+++AL++I+ G + E L QAGL+R+RADWL+G+NL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  QAQGFG--EVLSIGRVQTPTLALVVNRDNDIARFEPKPYWQVMAALQKDDIS-FRVKWLP  236
             + G+G  ++LSIGR+QTPTL LVV+RD++I  F P  Y  +   ++  D S F   W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW-Q  238

Query  237  APDD-CDEEKRCIREDIAQSVVQRCQQAQDAVVTELTQKREKTPPPLCFDLGMLQQVASR  295
             P++  + +  C   +  +++V++ +++ + V+T   + R  TPPPL + L+ LQ+ A++
Sbjct  239  VPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  QWGMGAGQVLTIAQSLYEIHKATTYPRTDCGYLPVSMREDIPAVFTALTRTDPAMNAIIS  355
            + G++A++VL IAQ+LYE  K T+YPRT C YLP S   ++  VF+A+   D +M ++I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  QLDASTLSRVWNDSQIT--AHHAIIPTRHT-FDMTKLTADELKIYQLIRHYYLAQFLPVQ  412
            + D+   SRVWND+Q+   +HHAIIPT+ + FD++ L  +EL +Y++IR+ Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ETDVTDVTFTIGGQVFQAKGRVSVVTGWKTLFADEK-QVQEQDDNTALPALKKEEICPVL  471
            E D T V     +++F+A  + +V++GWK L++ +  + ++ D+  ALP LK ++    L
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  472  RAEIQPRQTRPPAPFTEGTLIAAMKNAAAF---IHDPQLKKVLRENAGLGTEATRAGIIE  528
              + + ++T PP+ FTE++L+  M+    F   ++D Q++K+L+   GLGTEATRA II+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  529  ALFNRQLLARKKKNLHATPLAQELIAGLPDVLTHPGMTALWEQSLDDIARGRATLDGFMQ  588
             LF+   + +K+ ++ AT  +++LIA +P ++++P  TA WE +L +I  G+ TL  FM 
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  589  KQAQWLAHLVEKGKTQPI---------------RFTLPKTPA--CPRC-GGPMQKRAGKT  630
             Q + +++LV ++K +++               + ++++     CP C  G +++R+ K 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  631  TP---FWGCTRYPACK  643
             P   +WGC+R+P CK
Sbjct  658  NPDKRYWGCSRFPECK  673

11) Tgr7_2823 in NC_011901


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 272/678 (41%), Positives = 438/678 (65%), Gaps = 37/678 (5%)

Query  1    MRVFLCEKPSQGKDIARVLGA-RQRGNGCYSGSGITVTWCIGHLVEAAPPETYGEQYKQW  59
            MR+FLCEKPSQ+KDI++VLG    R +G +  ++  VTW +GH++  A+P++YGEQY + 
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SIEQLPILPERWRIEVKAKTAAQFKIVKQFVAQAGELVIATDADREGEMIAREIIDLCG  118
             +I  LPILPE W+++V +K + QFK++K ++A+A+E+VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNDASIRKALTQLKPGGETLPLYFSALARSRADWLIGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++KAL+ + PG +   LY ++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RRSGY--QGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWTIDVTLSHAGQS-FAASWMP  235
              +GY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y T+ V +  A++S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDGTTDAAGRCLQQPVAQQAADRIRAGRESKVLSVETERVREAAPLPFDLGTLQEVCSRQ  295
            P+   ++ G C +    +    ++  +  +KV++ + ER   ++PLP+ L++LQ   +++
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQSLYETHKATTYPRSDSGYLPESMLAEVPTVLDALLATDPGLRPLIDR  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S ++EV  V+ A+ + D ++ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRTQRSRVWNDSKIT--AHHGIIPTLEPA-NLSAMSEKELAVYALIRAHYLAQFLPHHE  412
             D  ++SRVWND+++   +HH+IIPT  +  +LS +  +EL+VY +IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTLVMLDCAGQSLQAVGKRVIVPGWHLALPGKGQDAADDEPAQRSQILPPLDTGARCG  472
            +D T+V ++  ++ ++A  +  +++GW + L   G+D  +++  + +  LP L      +
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLL---GKDVFEGDQIDEGPALPHLKVNDEVD  475

Query  473  VQQVELKALKTLPPKPYTQGELIKAM---KGVAKLVTDPRLKQKLKETTGIGTEATRAGI  529
                +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  INGLLARGYLVKKGRAIRASDAAFTLIDAVPAAITDPGTTAIWEQALDMIEAGQMTLDTF  589
            I+ L+  GY+ KK   I A++ +  LI  +P+ I+DP TTA WE AL  IEAG++TL  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  INKQSAWVAQLVQQYRGTVLSIKLP-----------------EGPACPVCGAAT-RQRNG  631
            +  Q   +++LV Q +   ++   P                 E+  CP C  +  RQR  
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGF  655

Query  632  KNGA---FWSCSRYPDCK  646
            K+ +   +W+CSR+P+CK
Sbjct  656  KENPDKRYWGCSRFPECK  673

12) Neut_0116 in NC_008344


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  441 bits (1662),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 278/678 (42%), Positives = 440/678 (65%), Gaps = 37/678 (5%)

Query  1    MRLFLCEKPSQGKDIGKVLGA-TQRDNGCLKGPGVIVTWCIGHLVEAAPPEAYDANLKHW  59
            MRLFLCEKPSQ+KDIGKVLG    R++G ++  + IVTW +GH++  A+P+AY+ +  + 
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-IEQLPIIPERWRIEVKPKTAAQFKVVKQLLAQATELVIATDADREGEMIAREIVELCG  118
            + I  LPI+PE W+++V PK + QFKV+K LLA+A E+VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNDASIRKALAALKPSSETLPMYHSALARSRADWLVGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++KAL+++ P+ +   +Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREINQFVSIPFWAIDVALSATGQS-FIAQWLA  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI+ FV+  + ++ V + ++++S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEACTDEAGRCLQESVAQQAAQQLRANGTAQVASVETERVREGPPLPFDLGTLQEVCSKQ  295
            PE   +  G C +    +   +QL  ++T++V + + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMQADVPAVLDSLLRTDPALRPVMEQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  ++V  V+ ++   D ++ +V+E+
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRRQRSRAWNDSKVT--AHHGIIPTLEPA-NLSAMSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND++V   +HH+IIPT  +  +LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTIARLSCAGQHLQAVGKQIVIPGWRLVLVeqqaedaddeaaPRSQVLPALNQGLSCQ  472
            +D T+  +   ++ ++A  +  VI+GW+++L  +  E+ + + +P    LP L+     +
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGP---ALPHLKVNDEVD  475

Query  473  MNTVDLKALKTLPPRPYTQGELVKAMKSVAKL---VSDPRLKQKLKDTVGIGTEATRANI  529
              + +  + KT PP  +T++ L+  M+++  +   V D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  INGLLTRGYLIKKGRAIRASEAAGTLIDTVPAAIADPGTTAVWEQALDMIEAGELTHDVF  589
            I+ L+  GY+ KK   I A+E +  LI  +P+ IADP TTA WE AL  IEAG LT   F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  TGKQSAWISQIIAQYQGTAM-----------------TIKVPQGPACPQCGSAT-RQRTG  631
             + Q   I+++++Q +  A+                 ++   ++  CP C  +  RQR  
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGF  655

Query  632  KNGP---FWSCSRYPECK  646
            K+ P   +W+CSR+PECK
Sbjct  656  KENPDKRYWGCSRFPECK  673

13) Alide2_1884 in NC_015422


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  440 bits (1657),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 274/678 (41%), Positives = 426/678 (63%), Gaps = 37/678 (5%)

Query  1    MRVFLCEKPSQGKDIARVLGA-GQRGNGCYSGASVVVTWCIGHLVEAVPPEGYGEQYKRW  59
            MR+FLCEKPSQ+KDI++VLG  G R +G +  +  +VTW +GH++   +P++YGEQY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   A-IEQLPIVPERWRVEPKAATVAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCG  118
            + I  LPI+PE W+++  +    QFKV++ L+AKA+E+VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNDASIRKALGALKPSAETMPLYFSALARSRADWLIGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++KAL+++ P+ +   LY ++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGY--NGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWATEVALSHAGQT-FVASWTP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  + +  V +  A+++ F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PQGSTDEAGRCLRQPVAQQAAERLRAAGTAQVLSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +    +L   +T++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGHLPESMLAEVPAVLDSLVKTDPSLRPLIDR  355
            LGL     L IAQ+LYE  K T+YPR+    LP S ++EV  V+ ++   D S+ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRQQRSRAWNDGKVT--AHHGIIPTLEPA-NLSAMTEKELAVYRLIRAHYLAQFLPHHE  412
             D +++SR WND +V   +HH+IIPT  +  +LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAQLTCGGQSLVAVGKQIATAGWRQVLAAPALDDTDGEDARRGQVLPALKAGDACQ  472
            +D TV ++   ++ + A  +    +GW+ +L+   +   +G++   G  LP LK  D  +
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF---EGDQIDEGPALPHLKVNDEVD  475

Query  473  VSQVELKALKTLPPKPYTQGELVKAM---KGVAKLVTDPRLKQKLKDTTGIGTEATRANI  529
                +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  ISGLLARGYLLKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEHALDMIEAGQMALDTF  589
            I  L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+++L  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  IAKQSSWVARLVQQYRGATLDLKLPPAPD-----------------CPQC-GAPMRQRSS  631
            +A Q   ++ LV Q +  +++   PP                    CP C  + +RQR+ 
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGF  655

Query  632  KSGV---FWSCSRYPDCK  646
            K      +W+CSR+P+CK
Sbjct  656  KENPDKRYWGCSRFPECK  673

14) BN117_0555 in NC_018828


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  438 bits (1651),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 274/678 (41%), Positives = 432/678 (64%), Gaps = 37/678 (5%)

Query  1    MRVFLCEKPSQGKDIARVLGA-GQRGNGYYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRW  59
            MR+FLCEKPSQ+KDI++VLG  G R +GY+  ++ +VTW +GH++   +P++YGEQY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   A-IEQLPILPERWRVEPKAATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCG  118
            + I  LPILPE W+++  +  + QFKV++ L+AKA+E+VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YHGPIQRLWLSALNDASIRKALGALKPSAETLPLYYSALARSRADWLIGMNLSRLFTLLG  178
            Y+  I R+W S+L+  S++KAL+++ P+ +   LY ++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGYT--GVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAVDVLLSHAGRS-FTASWIP  235
              AGY    +LS+GR+QTPTLKLVV+RD+EI  FV+  Y ++ V +  A++S FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEGSTDAAGRCLQQPVAQQAADCIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSKQ  295
            PE   ++ G C +    +     +  +  ++V++ + ER   +PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMLAKVPAVLDALLATDPSLRPLIGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S ++ V  V+ A+ + D S+ ++I +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRNQRSRAWNDGKVT--AHHGIIPTLEPA-NLSAMNEKELAVYRLIRAHYLAQFLPHHE  412
             D +++SR WND +V   +HH+IIPT  +  +LS ++ +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAQFSCGSQSLAAVGKQIAVTGWREVLATPGPDDADGEDAQRSQVLPALHAGLSCP  472
            +D TV +    S+ + A  +   ++GW+ +L   G D  +G++ + +  LP L       
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLL---GKDVFEGDQIDEGPALPHLKVNDEVD  475

Query  473  VGKVDLKALKTLPPKPYTQGELIKAMKTVAKF---VTDPRLKQKLRDTTGIGTEATRANI  529
                +  + KT PP  +T++ L+  M+T+  F   V D ++++ L+ T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  INGLIGRGYLVKKGRAVRASDAAFTLIDAVPSAIADPGTTAVWEQALDMIEAGQMALDTF  589
            I+ L+  GY+ KK   + A++ +  LI  +P+ IADP TTA WE AL  IEAG+++L  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  IEKQSVWVGQLVQQYRGATLSLKLPPTPA-----------------CPQC-GAPMQQRTG  631
            +  Q   + +LV Q +  +++   PP  +                 CP C  + ++QR  
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGF  655

Query  632  KSGA---FWSCSRYPDCK  646
            K  +   +W+CSR+P+CK
Sbjct  656  KENPDKRYWGCSRFPECK  673

15) topB in NC_014304


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  438 bits (1648),  Expect = 6e-124, Method: Compositional matrix adjust.
 Identities = 279/677 (42%), Positives = 427/677 (64%), Gaps = 35/677 (5%)

Query  1    MQLYLCEKPSQAKDIARVLGV-SQRGQGCINGGNITVTWAVGHLLETATPEIYGEQFGRP  59
            M+L+LCEKPSQAKDI++VLGV + R +G ++ G+  VTWA GH+L  A+P+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRAEVLPIIPDRWQMTVKKDTADQFAVIKKLLKQASEVVIATDADREGEVIARELMEYCN  119
                 LPI+P+ WQM V    + QF VIK LL +A EVVIATDADREGEVIARE+++YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  YRGAVRRLWLSALDEASIKKALGEMLPGDKTEMLYQAGVGRSRADWLIGMNLTRLYTLKA  179
            YR  + R+W S+LD  S+KKAL+ ++PG   E LYQAG++R+RADWL+GMNL+R YT   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  180  GEA-GVSEVFSVGRVQTPTLAIVVNRDLEIAGFTPKPWWKVRAQLQKDDVS-FEAEWVAA  237
            + + G  +++S+GR+QTPTL +VV+RD EI  F P     +  +++  D S F + W  +
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  238  AQYCDDEKRCVN-HPIAQAVQQLCQKAGSGSVISVEKKRDKTPAPLCFTLGTLMEVCNKK  296
             +  + +  C N +++   V+QL    ++G VI+ +K R  TP+PL ++L++L     KK
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQL--EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WGFGANEVLSIAQSLYETHKATTYPRTDCGYLPVSMREEVRDVLQAIQHSDPSITPELAR  356
             G++A+ VL IAQ+LYE  K T+YPRT C YLP S   EV+DV+ AIQ  D S+ + + +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDTAFTSRVWNDKKIT--AHHAIIPTRQP-FEIAKLNAKELKVYSLIRLHYLAQFMPLQE  413
             D    SRVWND+++   +HHAIIPT+ + F+++ L+ +EL VY +IR +Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  SDVTDATFNIGNQLFRTRGRVMIHAGWKSLFSGQLSEEGEEDKESAAQLPALEQGSVCSV  473
             D T    +  ++LF++  +  + +GWK L++ ++ E   ++ + ++ LP L        
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  474  TGADVKDNMTKAPPHHTEGTLIAAMKNAASL---VTDPQLKKVLRDNAGLGTEATRSGVL  530
             + +   + T +PP+ TE++L+  M+    +   V D Q++K+L+   GLGTEATR+ ++
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  531  ETLFKRGFLEKKGKFIQATQMARELIAALPETLTSPGMTALWEQALDDIAQGKSGLSDFM  590
            + LF  G++EKK   I AT+ +R+LIA +P  ++ P  TA WE AL +I  GK  L++FM
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  591  QKQTQWTRHLIEKGRVAAF------KITVPVGPS-----------CPKC-GGPTQQRKNK  632
              Q +   +L+ +++  A       K T + G             CP C  G  +QR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  633  ED---KFWGCMKFPDCK  646
            E+   ++WGC +FP+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

16) Spro_4107 in NC_009832


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  437 bits (1644),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 279/679 (42%), Positives = 428/679 (64%), Gaps = 36/679 (5%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPTQWKMTVKKETADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M V    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRATLQKGGIA-FPASWVP  236
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++ ++ + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AANYCDEEKRCIQQNVAQAVV-QLCQQTGHAVVLEVGTERKKESAPLAFDLGTLQQACSR  295
            + N  + +  C + +  +A+V QL + TG   V+    ERK  ++PL++ L++LQ+  ++
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKSTGK--VITSNKERKSTPPPLPYSLSALQKEAGK  297

Query  296  KWGMSANQALSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTQSGSVA  355
            K G+SA++ L IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D +  + + 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  RLDRTFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQFLPLH  412
            + D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  EVDVTEATFNIGGQLFRTRGKVEVVAGWKVLFQHDVSEAKEESTDTDDVRLPALVKGETV  472
            E D T    +  ++LF++  +  V++GWKVL+  DV E+ +   +     LP L   + V
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEV  474

Query  473  AVAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTEATRAG  529
               + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTEATRA 
Sbjct  475  DTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  530  ILETLFKRGYLEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDT  589
            I++ LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G++TL  
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  590  FMSRQAQWTGHLVEKGKAQAVKFtappsppcptcs------------------GTMRRRA  631
            FM+ Q +   +LV ++K +AV  + PP    ++ +                  G +R+R+
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  632  GKKGSGA-FWGCSNYPTCQ  649
             K  ++  +WGCS +P C+
Sbjct  655  FKENPDKRYWGCSRFPECK  673

17) CFSAN002050_22395 in NC_021818


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  437 bits (1647),  Expect = 7e-124, Method: Compositional matrix adjust.
 Identities = 287/676 (43%), Positives = 431/676 (64%), Gaps = 35/676 (5%)

Query  1    MQLFLCEKPSQAKDIARVLGI-SKREQGFISGGNIVVTWAVGHLLETASPEAYGEQYGRP  59
            M+LFLCEKPSQAKDI++VLG+ + R++G++  G+ +VTWA GH+L  A+P+AYGEQY+  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRADVLPVLPEAWKMVVKEQTKSQFTVISKLLKKASEVVIATDADREGEVIARELMEYCR  119
                 LP+LPE W+M V  +   QF VI  LL KA EVVIATDADREGEVIARE+++YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  YSGAVRRLWLSALDEASVKEALSSILPGEKTALLYDAGKGRSQADWLIGMNLTRLYTLKA  179
            Y   + R+W S+LD  SVK ALSSI+PG     LY+AG +R++ADWL+GMNL+R YT   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  180  RDS-GVSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVR-FRAVWVPV  237
              + G  ++LS+GR+QTPTL +VV+RD+EI +FVP     +   +E  +   F ++W   
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  238  EQYCDEEKRCINPQAARA-VGQLCQQQGRAVVLEVTQKREKTAAPLCFDLGTLQQVCSRK  296
            E+  + +  C N +A +A V QL +  G+  V+   + R  T++PL + L++LQ+  ++K
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGK--VITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  FGMGANDVLAIAQSLYETHKATTYPRTDCGFLPTSMQQEIPDVLAAVAKSDPAVAPVLNQ  356
            +G++A+ VL IAQ+LYE  K T+YPRT C +LP S   E+ DV+AA+   D ++ +V+++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRKFVSRVWNDKKIT--AHHAIIPTRQA-FDLSRLSADELKVYHLIRQHYFAQFLPLQE  413
             D    SRVWND+++   +HHAIIPT+ + FDLS L  +EL VY++IR++Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  SDVTEASFNIGGQLFRTRGKVGVVTGWKSLFQAekdddeedvdgdSMALPALAKGDICAV  473
             D T    +  ++LF++  +  V++GWK L+   KD  E D  +++ ALP L   D    
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLL--GKDVFEGDQIDEGPALPHLKVNDEVDT  476

Query  474  TGSEVKDMKTSPPKPFTEGTLIAAMKNAASF---VSDPKLKKVLRDNAGLGTEATRAAVL  530
             + +    KT+PP  FTE++L+  M+    F   V D +++K+L+   GLGTEATRA+++
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  531  ETLFKRHYLEKKGKHIHSTQMARELIAALPETLTSPGMTALWEQALDDISQGKMSLAVFM  590
            + LF   Y+EKK   I +T+ +R+LIA +P  ++ P  TA WE AL +I  GK++LA FM
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  591  QKQLQWTRHLVEKGRQDSVKITAPVTPP-----------------CPLCKGPTrkrkgkk  633
              Q +   +LV ++++D+V  + P                     CP CK    +++G K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  634  gD----FWGCVRYPDC  645
             +    +WGC R+P+C
Sbjct  657  ENPDKRYWGCSRFPEC  672

18) NH44784_010001 in NC_021285


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

19) topB2 in NC_007973


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

20) LF82_668 in NC_011993


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 275/679 (41%), Positives = 435/679 (65%), Gaps = 40/679 (5%)

Query  1    MKLFLCEKPSQGRDIAAVLGATKKMPGHQTG----NGVCVTWGFGHLLEQASPDAYGEQF  56
            M+LFLCEKPSQ++DI+ VLG    + G++ G     +  VTW+FGH+L QA+PDAYGEQ+
Sbjct  1    MRLFLCEKPSQAKDIGKVLGV---LGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQY  57

Query  57   GVPWRTDVLPVLPTMWQMRVKPDAAAQFSVIQKLLKQADTVVIATDADREGEVIAREILD  116
            +       LP+LP +WQM+V P  + QF VI+ LL +AD VVIATDADREGEVIAREILD
Sbjct  58   ADFGNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILD  117

Query  117  YCHYQGKVERLWLSALDEASVRAALATIKPGSTTLPYYLAGLGRARADWQIGMNMTRLYS  176
            YC Y+ K+ R+W S+LD  SV+ AL++I PG      Y AGL+R+RADW +GMN++R Y+
Sbjct  118  YCGYRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT  177

Query  177  VKARENGYGS--VLSVGRVQTPTLNLIVVRDRDIVQFVPKPYWNVVAQLAAGGIA-FQAQ  233
              A   GYG   +LS+GR+QTPTL+L+V RD++I  FVP  Y  +  ++ +++ + F + 
Sbjct  178  A-AYSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTL  236

Query  234  WVPAEAYCDEEKRCINPTAAQQVVQLCQKTGQATVAEVETKRETESAPLAFDLGTLQQAC  293
            W  +E   + +  C N  A + +V+  +K+  + V   +  R + ++PL++ L++LQ+  
Sbjct  237  WQVPENWRNTDGYCTNLEAVKALVKQLEKST-GKVITSNKERKSTPPPLPYSLSALQKEA  295

Query  294  SRRFGYGAQQVLDIAQALYETYKATTYPRTDCGYLPTSMRGEIGQVMSSIQQSDPALSAI  353
            ++++G +A +VL IAQ+LYE YK T+YPRT C YLP S  +E+ +V ++IQ  D ++ ++
Sbjct  296  GKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSV  355

Query  354  ISRLDMKHVSRIWNDKKIT--AHHGIIPTKQPC-DLAKMSEQERNVYQLIRLHYLAQFLP  410
            I + D  + SR+WND+++   +HH+IIPTK +  DL+ +  +E  VY++IR +Y+AQF P
Sbjct  356  IEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYP  415

Query  411  NHEVDATRVSLHCGGQLFKTSGKAVVVAGWKSLFgkdadedagdagdkaRLPAMAKGSLC  470
            + E D+T V ++  ++LFK+S ++ V++GWK L+GKD  E+     + A LP +      
Sbjct  416  DFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA-LPHLKVNDEV  474

Query  471  QVTGAEAKPQQTKPPEHYTEGTLIAAMKNAAQF---VTDPRLKKILKENAGLGTEATRAG  527
            +  + ++  ++T PP ++TE++L+  M+   +F   V D +++KILK   GLGTEATRA 
Sbjct  475  DTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  528  VIETLLKRGFVVKKGKHLLATPIAADLMAVLPAQLKDPGMTALWEQSLDDIAEGRMSLDD  587
            +I+ L+  G++ KK   + AT  + +L+A +P+ + DP  TA WE +L +I  G+++L +
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  588  FMAKQSAWTMQLVAKGQHQTVKITLPPSPP-----------------CPIC-GGVTRQRT  629
            FMA Q     +LV++++ ++V  + PP                    CP C  G  RQR 
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  630  GKSGS---FWGCVNYPDCN  645
             K  +   +WGC  +P+C+
Sbjct  655  FKENPDKRYWGCSRFPECK  673

21) NRG857_20800 in NC_017634


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 275/679 (41%), Positives = 435/679 (65%), Gaps = 40/679 (5%)

Query  1    MKLFLCEKPSQGRDIAAVLGATKKMPGHQTG----NGVCVTWGFGHLLEQASPDAYGEQF  56
            M+LFLCEKPSQ++DI+ VLG    + G++ G     +  VTW+FGH+L QA+PDAYGEQ+
Sbjct  1    MRLFLCEKPSQAKDIGKVLGV---LGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQY  57

Query  57   GVPWRTDVLPVLPTMWQMRVKPDAAAQFSVIQKLLKQADTVVIATDADREGEVIAREILD  116
            +       LP+LP +WQM+V P  + QF VI+ LL +AD VVIATDADREGEVIAREILD
Sbjct  58   ADFGNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILD  117

Query  117  YCHYQGKVERLWLSALDEASVRAALATIKPGSTTLPYYLAGLGRARADWQIGMNMTRLYS  176
            YC Y+ K+ R+W S+LD  SV+ AL++I PG      Y AGL+R+RADW +GMN++R Y+
Sbjct  118  YCGYRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT  177

Query  177  VKARENGYGS--VLSVGRVQTPTLNLIVVRDRDIVQFVPKPYWNVVAQLAAGGIA-FQAQ  233
              A   GYG   +LS+GR+QTPTL+L+V RD++I  FVP  Y  +  ++ +++ + F + 
Sbjct  178  A-AYSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTL  236

Query  234  WVPAEAYCDEEKRCINPTAAQQVVQLCQKTGQATVAEVETKRETESAPLAFDLGTLQQAC  293
            W  +E   + +  C N  A + +V+  +K+  + V   +  R + ++PL++ L++LQ+  
Sbjct  237  WQVPENWRNTDGYCTNLEAVKALVKQLEKST-GKVITSNKERKSTPPPLPYSLSALQKEA  295

Query  294  SRRFGYGAQQVLDIAQALYETYKATTYPRTDCGYLPTSMRGEIGQVMSSIQQSDPALSAI  353
            ++++G +A +VL IAQ+LYE YK T+YPRT C YLP S  +E+ +V ++IQ  D ++ ++
Sbjct  296  GKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSV  355

Query  354  ISRLDMKHVSRIWNDKKIT--AHHGIIPTKQPC-DLAKMSEQERNVYQLIRLHYLAQFLP  410
            I + D  + SR+WND+++   +HH+IIPTK +  DL+ +  +E  VY++IR +Y+AQF P
Sbjct  356  IEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYP  415

Query  411  NHEVDATRVSLHCGGQLFKTSGKAVVVAGWKSLFgkdadedagdagdkaRLPAMAKGSLC  470
            + E D+T V ++  ++LFK+S ++ V++GWK L+GKD  E+     + A LP +      
Sbjct  416  DFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA-LPHLKVNDEV  474

Query  471  QVTGAEAKPQQTKPPEHYTEGTLIAAMKNAAQF---VTDPRLKKILKENAGLGTEATRAG  527
            +  + ++  ++T PP ++TE++L+  M+   +F   V D +++KILK   GLGTEATRA 
Sbjct  475  DTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  528  VIETLLKRGFVVKKGKHLLATPIAADLMAVLPAQLKDPGMTALWEQSLDDIAEGRMSLDD  587
            +I+ L+  G++ KK   + AT  + +L+A +P+ + DP  TA WE +L +I  G+++L +
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  588  FMAKQSAWTMQLVAKGQHQTVKITLPPSPP-----------------CPIC-GGVTRQRT  629
            FMA Q     +LV++++ ++V  + PP                    CP C  G  RQR 
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  630  GKSGS---FWGCVNYPDCN  645
             K  +   +WGC  +P+C+
Sbjct  655  FKENPDKRYWGCSRFPECK  673

22) Plav_3385 in NC_009719


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

23) PADK2_12250 in NC_018080


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

24) PLES_27011 in NC_011770


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

25) topB in NC_017671


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

26) topB in NC_017958


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  435 bits (1640),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 278/683 (41%), Positives = 433/683 (64%), Gaps = 42/683 (6%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SVEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIVELCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGQLRPSAETLSMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +  ++Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSL-FAGGSTFAAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +++V +  A+ S F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDACTDDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C      +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-KLSAMSEKELAVYRLIRSHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +   LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYE  472
            +D TV      ++ + A+ +  VI+GW+ +L+    E+++ + +        PALP L  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEG--------PALPHLKV  470

Query  473  GLACQVADVDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEA  529
                +    +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  530  TRANIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQL  589
            TRA II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+L
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  590  TLDVFIGKQAAWISQLIAQ-----------------YGSASLSIKVPQGPACPQC-GAPT  631
            TL  F++ Q   I++L++Q                  G+   ++   ++  CP C  +  
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRL  650

Query  632  RQRSGKSGP---FWSCSRYPDCK  651
            RQR+ K  P   +W+CSR+P+CK
Sbjct  651  RQRGFKENPDKRYWGCSRFPECK  673

27) XC_2064 in NC_007086


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  435 bits (1640),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 278/677 (42%), Positives = 430/677 (64%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCG  118
            + I  LPI+P+ WQ++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDV-YLTTSGQAFTAQWVS  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + T+    FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDTCTDDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQ  295
            P+   +  G C +    +   +Q+   ++++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLPKTDFSLRPIIDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRTQRSRAWNDAKVS--AHHGIIPTLEPA-NLSAMSEKELAVYKLIRAHYLAQFLPHHE  412
             D  ++SR WND +V+  +HH+IIPT  +  +LS +  +EL+VY++IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQV  472
            +D TV ++    + + A+ +  V+ GW+++L+    E  +D    +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  473  ADVDLKALKTQPSRPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEATRANII  529
               +  + KT P+  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SGLIARGYLMKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFI  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  GKQAAWISQLITQYASASLSIKVP-----------------HGPACPQC-GAPTRQRSGK  631
            + Q   I++L+ Q    +++   P                 ++  CP C  +  RQR+ K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

28) NH44784_010791 in NC_021285


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  435 bits (1639),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 276/680 (41%), Positives = 434/680 (64%), Gaps = 39/680 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAATPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  A+P+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SIEQLPIIPQHWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCG  118
             +I  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYHSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y+++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIVVSLSAGVQA-FTAHWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + ++ ++ FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PNACTDDAGRCLqqpvaqqamqqIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQ  295
            P+   +  G C +    +  ++Q+   +++ V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVTTVLDSLLKTDPSLRSIIGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ S+I +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRLQRSRAWNDGKVT--AHHGIIPTLEPA-NLSAMSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDHTVAKLSCGGQNLAATGKQVVTPGWRQVLAEPQSEdgdgdgdTAARAQVLPALHEGLA  472
            +D TV  +   ++ + A+ +  V +GW+ +L+    E+++        +  LP L     
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQ-----IDEGPALPHLKVNDE  473

Query  473  CQVADIDLKALKTLPPKPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEATRA  529
             +   ++  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA
Sbjct  474  VDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRA  533

Query  530  NIIGGLIARGYLVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLD  589
             II+ L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL 
Sbjct  534  TIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLA  593

Query  590  VFIGKQAAWISQLIAQYGNASLSIKAP-----------------QGPTCPQC-GAPTRQR  631
             F++ Q   I++L++Q  + +++   P                 ++  CP C  +  RQR
Sbjct  594  EFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQR  653

Query  632  SSKSGP---FWSCSRYPDCK  648
            + K  P   +W+CSR+P+CK
Sbjct  654  GFKENPDKRYWGCSRFPECK  673

29) topA in NC_020815


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  435 bits (1637),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 278/677 (42%), Positives = 430/677 (64%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCG  118
            + I  LPI+P+ WQ++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDV-YLTTSGQAFTAQWVS  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + T+    FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDTCTDDSGRCLqqpvaqqaaqqLRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQ  295
            P+   +  G C +    +   +QL   ++++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRTQRSRAWNDAKVS--AHHGIIPTLEPA-NLSAMSEKELAVYKLIRAHYLAQFLPHHE  412
             D  ++SR WND +V+  +HH+IIPT  +  +LS +  +EL+VY++IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQV  472
            +D TV ++    + + A+ +  V+ GW+++L+    E  +D    +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  473  ADADLKALKTQPSRPYTQGELVKSM---KGVAKLISDPRLKQKLKDTVGIGTEATRANII  529
               +  + KT P+  +T++ L+  M   K+  K + D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SGLIARGYLMKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFI  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  GKQAAWISQLITQYASASLSIKVP-----------------HGPACPQC-GAPTRQRSGK  631
            + Q   I++L+ Q    +++   P                 ++  CP C  +  RQR+ K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

30) xccb100_2412 in NC_010688


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  434 bits (1636),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 278/677 (42%), Positives = 430/677 (64%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCG  118
            + I  LPI+P+ WQ++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDV-YLTTSGQAFTAQWVS  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + T+    FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDTCTDDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQ  295
            P+   +  G C +    +   +Q+   ++++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRTQRSRAWNDAKVS--AHHGIIPTLEPA-NLSAMSEKELAVYKLIRAHYLAQFLPHHE  412
             D  ++SR WND +V+  +HH+IIPT  +  +LS +  +EL+VY++IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQV  472
            +D TV ++    + + A+ +  V+ GW+++L+    E  +D    +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  473  ADVDLKALKTQPSRPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEATRANII  529
               +  + KT P+  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SGLIARGYLMKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFI  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  GKQAAWISQLITQYASASLSIKVP-----------------HGPACPQC-GAPTRQRSGK  631
            + Q   I++L+ Q    +++   P                 ++  CP C  +  RQR+ K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

31) B5T_02138 in NC_018691


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  434 bits (1635),  Expect = 7e-123, Method: Compositional matrix adjust.
 Identities = 266/628 (43%), Positives = 413/628 (66%), Gaps = 22/628 (3%)

Query  4    IYLCEKPSQGQDIARVLGA-TRKGNGCRSTQSEEVVVTWCFGHLLEMPPPEAYDPALKSW  62
            ++LCEKPSQ++DI++VLG    + +G    Q+ + +VTW FGH+L  ++P+AY+      
Sbjct  3    LFLCEKPSQAKDIGKVLGVLGGRHDGY--FQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  63   A-LDTLPIIPEQWRLVVKPSAQRQFTVIKKWLGSASRLVIATDADREGEVIAREVMALCG  121
            + + +LPI+PE W++ V P   +QF VIK  L+ A  +VIATDADREGEVIARE++  CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  122  YRGPVQRLWLSALNDASIRKALSQLRDGKQTYPLYLAGMARARADWLVGMNLTRAYTVLG  181
            YR  + R+W S+L+  S++KALS +  GK+   LY AG+AR+RADWLVGMNL+RAYT  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  182  RNAGY--QGVLSVGRVQTPTLRLVVDRDRAIEAFKPSPYWTITSTLSAQGAAAPAFRAHW  239
             +AGY  + +LS+GR+QTPTL+LVV+RD+ I++F P  Y T++  +  + A  + F + W
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDF--ETADKSVFTTLW  237

Query  240  QPAAEHCDSQGRCINETVARTVAQQCSVTGAQAHVTDSKKERKAAPPPLPFDLNSLQQEA  299
            Q + +  +++G C N    +++ +Q  +  + + V  S+KERK++PPPLP+ L++LQ+EA
Sbjct  238  QVPENWRNTDGYCTNLEAVKALVKQ--LEKSTGKVITSNKERKSTPPPLPYSLSALQKEA  295

Query  300  GKRFDLSGNQVLEAAQALYETHKITSYPRTECRHLPTSMHGEAPDVLRAVLAMEPELTSI  359
            GK+++LS+++VL  AQ+LYE  KITSYPRT CR LP S  +E  DV+ A+ +++  + S+
Sbjct  296  GKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSV  355

Query  360  QSMLDMSRRTKTWNDTEVEKASHHGIIPTAESA-DLTRLSTTERQVYGLIRRHYLIQFLP  418
                D  R+++ WND +V+K SHH+IIPT  S  DL+ L   E  VY +IR +Y+ QF P
Sbjct  356  IEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYP  415

Query  419  DHQYDATTLTLSVQGHPFLAKGKATVEPGWTRLFPSSKSTPqdgddqqdgsgdqgTVPAL  478
            D +YD+T + +   +H F A  ++ V +GW  L+            + D  ++  ++P L
Sbjct  416  DFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKD-------VFEGDQIDEGPALPHL  468

Query  479  PEGTSCAIQSVDCDRKMTTPPARYTDGTLIAAM---KNIAKMVTDPKLRAVLRDTAGLGT  535
                     S + + K TTPP+R+T+++L+  M   K++ K V D ++R +L+ T GLGT
Sbjct  469  KVNDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGT  528

Query  536  GATRANIIATLKKRGFIEKKRGHLVSTEQGRQLIDALPSAITNPDTTAAWEQALEDIATG  595
             ATRA II  L   G++EKKR+ + +TE+GR+LI  +P+ I++P TTA WE AL +I +G
Sbjct  529  EATRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAG  588

Query  596  TGTLDEFMRRQLDWLNTVVTHAKGQTLS  623
              TL EFM  Q   +  +V +AK ++++
Sbjct  589  KLTLAEFMAYQQKVITELVGQAKKDAVG  616

32) topB in NC_007508


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  433 bits (1630),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 277/677 (41%), Positives = 430/677 (64%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-IEQLPIIPQRWQVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIDLCG  118
            + I  LPI+P+ WQ++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDV-YLTTSGQAFTAQWIS  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + T+    FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDTCTDDSGRCLqqpvaqqaaqqIRATGSAQVVSVETERVREGPPLPFDLGTLQELCSKQ  295
            P+   +  G C +    +   +Q+   ++++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMFAEVPIVLDSLLKTDFSLRPIIDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ ++I++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRTQRSRAWNDAKVS--AHHGIIPTLEPA-NLSAMSEKELAVYKLIRAHYLAQFLPHHE  412
             D  ++SR WND +V+  +HH+IIPT  +  +LS +  +EL+VY++IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLSCGQQTLTATGKQVVVKGWRLVLAEPQPEEDSDTAARSQVLPALREGVSCQV  472
            +D TV ++    + + A+ +  V+ GW+++L+    E  +D    +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  473  ADVDLKALKTQPSRPYTQGELVKSM---KGVAKLVSDPRLKQKLKDTVGIGTEATRANII  529
               +  + KT P+  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SGLIARGYLMKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFI  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  GKQAAWISQLITQYASASLSIKVP-----------------HGPACPQC-GAPTHQRSGK  631
            + Q   I++L+ Q    +++   P                 ++  CP C  +  +QR+ K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

33) topB in NC_012660


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 275/679 (41%), Positives = 428/679 (64%), Gaps = 42/679 (6%)

Query  1    MRLFLCEKPSQGRDIATVLGA-TRRGDGCLIGTETTVTWCIGHLLETAPPEAYGIQYKNW  59
            MRLFLCEKPSQ++DI+ VLG    R DG +   +T VTW +GH+L  A+P+AYG QY + 
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LDHLPIIPAQWKVEVKHKTAAQFKVIKRLLSEASAVVIATDADREGEMIARELLELCN  118
            + +  LPI+P  W+++V  K + QFKVIK LL+ A  VVIATDADREGE+IARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVERLWLSALNEVSILKALSSLKSGQETFPLYHSALARSRADWLIGMNLSRLFTLLG  178
            YR  + R+W S+L+  S+ KALSS+ +G++   LY+++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RRAGY--DGVLSVGRVQTPTLRLVVDRDRAIASFVSVPYWDVEVHLSFMGQS-FIASWLP  235
              AGY  + +LS+GR+QTPTL+LVV+RD+ I +FV+  Y  + V++   ++S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PSS--GRDEACRCLQ--QALARHAGQTITDGKTATVLSLQTEHFREPPPLPFDLSTLQEV  291
            P +    D  C  L+  +AL ++  ++     T+ V++ + E+   PPPLP+ LS+LQ  
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-----TGKVITSNKERKSTPPPLPYSLSALQKE  294

Query  292  CSRKLGLGVQETLNIAQALYETHKATTYPRSDCRYLPASMFDEVPTVFDALLKTDSALQP  351
             ++KLGL+    L+IAQ+LYE  K T+YPR+ CRYLP S   EV  VF A+   D ++ +
Sbjct  295  AGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLS  354

Query  352  AFEKLDRSLRSRAWNDAKAT--AHHGIIPTTEPA-NLARMSEQERQVYEQIRNHYLAQFL  408
             +EK D   +SR WND +    +HH+IIPT  +  +L+ +  +E  VY  IR++Y+AQF 
Sbjct  355  VIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFY  414

Query  409  PHHEFDRTQVELECGKERLTAVGKQILVQSWKGLLYDNTEDDEPSQKFQVLPVLQQGTQC  468
            P+ E+D T VE+E   + + A  +  ++ +WK LL  +  +++  +    LP L+   + 
Sbjct  415  PDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEV  474

Query  469  AVNDVELKSMRTTAPKPLTEGDLIKAM---KNVAKLVNDPRLKQKLRDTTGIGTEATRAG  525
                 +  + +TT+P  +TE+ L+  M   K+  K V+D ++++ L+ T G+GTEATRA 
Sbjct  475  DTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  526  IIKGLIDRGYLLKKKRALMASAAAHTLIEAVPAAIADPGMTAIWEQALDEIEAGRLSLDA  585
            II  L++ GY+ KK+  + A+  ++ LI  +P+ IADP  TA WE AL  IEAG+L+L  
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  586  FVAKQASWIAQLVEHCRALTL-----------------ALPVETGPACPICNASMLRRTG  628
            F+A Q   I++LV + +  ++                 A++ + +  CP C+ + LR+ G
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  629  -KSGA---FWSCSHYPDCK  643
             K  +   +W+CS++P+CK
Sbjct  655  FKENPDKRYWGCSRFPECK  673

34) SerAS12_0272 in NC_015566


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  432 bits (1627),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 262/620 (43%), Positives = 404/620 (66%), Gaps = 15/620 (2%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M +    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIA-FPANWVP  236
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++ ++ + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AANYCDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRK  296
            + N  + +  C + +  +A+V++  + + + V+    ERK  ++PL++ L++LQ+  ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQ-LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WGMSANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVAR  356
             G+SA++VL IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D ++   + +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRAFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQFLPLHE  413
             D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  VDVTEATFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVA  473
             D T    +  ++LF++  +   ++GWKVL+  DV E+ +   +     LP L   + V 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  474  VAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTEATRAGI  530
              + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  531  LETLFKRGYLEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTF  590
            ++ LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G++TL  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  591  MSRQAQWTGHLVEKGKTQAV  610
            M+ Q +   +LV ++K +AV
Sbjct  596  MAYQQKVITELVGQAKKDAV  615

35) SerAS13_0271 in NC_017573


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  432 bits (1627),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 262/620 (43%), Positives = 404/620 (66%), Gaps = 15/620 (2%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M +    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIA-FPANWVP  236
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++ ++ + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AANYCDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRK  296
            + N  + +  C + +  +A+V++  + + + V+    ERK  ++PL++ L++LQ+  ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQ-LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WGMSANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVAR  356
             G+SA++VL IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D ++   + +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRAFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQFLPLHE  413
             D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  VDVTEATFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVA  473
             D T    +  ++LF++  +   ++GWKVL+  DV E+ +   +     LP L   + V 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  474  VAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTEATRAGI  530
              + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  531  LETLFKRGYLEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTF  590
            ++ LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G++TL  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  591  MSRQAQWTGHLVEKGKTQAV  610
            M+ Q +   +LV ++K +AV
Sbjct  596  MAYQQKVITELVGQAKKDAV  615

36) SerAS9_0272 in NC_015567


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  432 bits (1627),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 262/620 (43%), Positives = 404/620 (66%), Gaps = 15/620 (2%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPTQWKMAIKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M +    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRGTLQKGGIA-FPANWVP  236
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++ ++ + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AANYCDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRK  296
            + N  + +  C + +  +A+V++  + + + V+    ERK  ++PL++ L++LQ+  ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQ-LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WGMSANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVAR  356
             G+SA++VL IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D ++   + +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRAFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQFLPLHE  413
             D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  VDVTEATFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVA  473
             D T    +  ++LF++  +   ++GWKVL+  DV E+ +   +     LP L   + V 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  474  VAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTEATRAGI  530
              + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  531  LETLFKRGYLEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTF  590
            ++ LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G++TL  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  591  MSRQAQWTGHLVEKGKTQAV  610
            M+ Q +   +LV ++K +AV
Sbjct  596  MAYQQKVITELVGQAKKDAV  615

37) XNC1_3450 in NC_014228


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  431 bits (1624),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 273/676 (41%), Positives = 444/676 (66%), Gaps = 36/676 (5%)

Query  1    MQLYLCEKPSQARDIARVLGV-KQRGQGYLFGDSIIVTWAIGHLLEMAAPEHYGEQFGPP  59
            M+L+LCEKPSQA+DI++VLGV   R +GY+  +  IVTWA+GH+L  AAP+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMEPLPVLPAQWQWTVKKETADQFAVIRQLLKQADEVIIATDADREGEVIARELLEYCH  119
              + +LP+LP  WQ  V    + QF VI+ LL +ADEV+IATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVRRLWLSALDETSIRQALAAILPGEKTAPLWQAGLGRARADWLTGINLTRLYTLKA  179
            +   + R+W S+LD  S+++AL++I+PG     L QAGL+R+RADWL G+NL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  QAQGFG--EVLSIGRVQTPTLALVVNRDNDIARFEPKPYWQVMATLQKDDIS-FRAKWLP  236
             + G+G  ++LSIGR+QTPTL LVV+RD++I  F P  Y  +   ++  D S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW-Q  238

Query  237  APDD-GDEEKRCIREDIAQSVVQRCQQTQDAVVTELTQKREKTPPPLCFDLGMLQQVASR  295
             P++  + +  C   +  +++V++ +++ + V+T   + R  TPPPL + L+ LQ+ A++
Sbjct  239  VPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  QWGMGAGQVLTIAQSLYETHKATTYPRTDCGYLPVSMRENIPAVFTALTRTDPAMSAIIS  355
            + G++A++VL IAQ+LYE  K T+YPRT C YLP S   ++  VF+A+   D +M ++I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  QLDASAFSRVWNDSQIT--AHPAIIPTRHT-FDMTKLTADELKVYQLIRHYYLAQFLPAQ  412
            + D+   SRVWND+Q+   +H AIIPT+ + FD++ L  +EL VY++IR+ Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ETDVTDVTFTIGGQVFQAKGRVSVVTGWKALFADEK-QAQEQEDNTALPALKKEEISPVL  471
            E D T V     +++F+A  + +V++GWK L++ +  ++++ ++  ALP LK ++    L
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  472  RAEIQPRQTRPPAPFTEGTLIAAMKNAAAF---IHDPQLKKVLRESAGLGTEATRAGIIE  528
              + + ++T PP+ FTE++L+  M+    F   ++D Q++K+L+ + GLGTEATRA II+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  529  alfkrrllarkkknlhaTQLAQELIAGLPDVLTHPGMTALWEQSLDDIARGRTTLDGFMQ  588
             LF    + +K+ ++ AT+ +++LIA +P ++++P  TA WE +L +I  G+ TL  FM 
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  589  KQAQWLAHLVEKGKTQPI---------------RFTLPKTPA--CPRC-GGPMQKRAGKT  630
             Q + +++LV ++K +++               + ++++     CP C  G +++R+ K 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  631  TP---FWGCTRYPACK  643
             P   +WGC+R+P CK
Sbjct  658  NPDKRYWGCSRFPECK  673

38) topB4 in NC_010170


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  431 bits (1623),  Expect = 5e-122, Method: Compositional matrix adjust.
 Identities = 272/677 (41%), Positives = 422/677 (63%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G +  ++  +TW +GH++  AAP+ Y+      
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCG  118
            + +  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++ AL+ + P+ D   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQA-FSAQWVA  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +F +  + ++ V + T +++ F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDGCTDDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQ  295
            P+   +  G C +    +    Q+      +V++ + ER    PPL + LS+LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLE-KSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQ  355
            LGL     L+IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSPLSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS L  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAEFSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQV  472
            +D TV E     +++ A+ +  V+ GW+++L+      +GD+   +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  473  AEVEIKALKTMPPKPYTQGELVKSMKGIARF---VTDPRLKQKLKDTTGIGTEATRANII  529
               +  + KT PP  +T++ L+  M+ +  F   V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SVLIARGYIVKKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFL  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  SKQAAWISQLIAQ-----------------YGSMSLSIKLPHGPACPQCGAAT-RQRTGK  631
            + Q   I++L++Q                  G+   ++   ++  CP C  +  RQR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

39) Daci_4150 in NC_010002


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  431 bits (1623),  Expect = 5e-122, Method: Compositional matrix adjust.
 Identities = 272/677 (41%), Positives = 422/677 (63%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G +  ++  +TW +GH++  AAP+ Y+      
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCG  118
            + +  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++ AL+ + P+ D   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQA-FSAQWVA  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +F +  + ++ V + T +++ F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDGCTDDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQ  295
            P+   +  G C +    +    Q+      +V++ + ER    PPL + LS+LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLE-KSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQ  355
            LGL     L+IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSPLSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS L  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAEFSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQV  472
            +D TV E     +++ A+ +  V+ GW+++L+      +GD+   +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  473  AEVEIKALKTMPPKPYTQGELVKSMKGIARF---VTDPRLKQKLKDTTGIGTEATRANII  529
               +  + KT PP  +T++ L+  M+ +  F   V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SVLIARGYIVKKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFL  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  SKQAAWISQLIAQ-----------------YGSMSLSIKLPHGPACPQCGAAT-RQRTGK  631
            + Q   I++L++Q                  G+   ++   ++  CP C  +  RQR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

40) PSTAA_1279 in NC_017532


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  431 bits (1623),  Expect = 5e-122, Method: Compositional matrix adjust.
 Identities = 272/677 (41%), Positives = 422/677 (63%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G +  ++  +TW +GH++  AAP+ Y+      
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCG  118
            + +  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARSRADWLVGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++ AL+ + P+ D   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQA-FSAQWVA  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +F +  + ++ V + T +++ F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDGCTDDAGRClqqpvaqqaalqIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQ  295
            P+   +  G C +    +    Q+      +V++ + ER    PPL + LS+LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLE-KSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLQIAQALYETHKATTYPRSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQ  355
            LGL     L+IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSPLSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS L  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAEFSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQV  472
            +D TV E     +++ A+ +  V+ GW+++L+      +GD+   +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  473  AEVEIKALKTMPPKPYTQGELVKSMKGIARF---VTDPRLKQKLKDTTGIGTEATRANII  529
               +  + KT PP  +T++ L+  M+ +  F   V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SVLIARGYIVKKGRSIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFL  589
              L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  SKQAAWISQLIAQ-----------------YGSMSLSIKLPHGPACPQCGAAT-RQRTGK  631
            + Q   I++L++Q                  G+   ++   ++  CP C  +  RQR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

41) Spro_0310 in NC_009832


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  431 bits (1621),  Expect = 7e-122, Method: Compositional matrix adjust.
 Identities = 262/620 (43%), Positives = 404/620 (66%), Gaps = 15/620 (2%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLAGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPTQWKMAVKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M V    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDITNFISKPYWQVRATLQKGGIT-FPANWVP  236
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++ ++ + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AANYCDEEKRCIQQNVAQAVVQRCQQTAHAVVLEVGTERKKESAPLAFDLGTLQQACSRK  296
            + N  + +  C + +  +A+V++  + + + V+    ERK  ++PL++ L++LQ+  ++K
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQ-LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WGMSANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTLNESVAR  356
             G+SA++VL IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D ++   + +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRAFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQYLSLHE  413
             D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQ+ +  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  VDVTEATFNIGGQLFRTRGKVEAVAGWKVLFQHDVSEAKEEPADTDDVRLPALVKGETVA  473
             D T    +  ++LF++  +   ++GWKVL+  DV E+ +   +     LP L   + V 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  474  VAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTEATRAGI  530
              + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  531  LDTLFKRGYLEKKGKYLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQMTLDTF  590
            +D LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G++TL  F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  591  MSRQAQWTGHLVEKGKTQAV  610
            M+ Q +   +LV ++K +AV
Sbjct  596  MAYQQKVITELVGQAKKDAV  615

42) XNC1_3649 in NC_014228


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  429 bits (1617),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 273/676 (41%), Positives = 441/676 (66%), Gaps = 36/676 (5%)

Query  1    MPLYLCEKPSQARDIARVLGV-KQRGQGYLFGDSIIVTWAIGHLLEMAAPEHYGEQFGPP  59
            M L+LCEKPSQA+DI++VLGV   R +GY+  +  IVTWA+GH+L  AAP+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMEPLPVLPAQWQWTVKKETADQFAVIRQLLKQADEVIIATDADREGEVIARELLEYCR  119
              + +LP+LP  WQ  V    + QF VI+ LL +ADEV+IATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVRRLWLSALDETSIRQALAAILPGEKTESLWQAGLGRARADWLMGINLTRLYTLKA  179
            +   + R+W S+LD  S+++AL++I+PG   E+L QAGL+R+RADWL+G+NL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  QAQGFG--EVLSIGRVQTPTLALVVNRDNDIARFEPKPYWQVVATLQKDGIG-FRVKWLP  236
             + G+G  ++LSIGR+QTPTL LVV+RD++I  F P  Y  +   ++  + + F   W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW-Q  238

Query  237  APDD-CDEEKRCIKEDIAHSVVQCCQEAQNAVVTELTQKREKTPPPLCFDLGMLQQVASR  295
             P++  + +  C + +   ++V+  + +   V+T   + R  TPPPL + L+ LQ+ A++
Sbjct  239  VPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  QWGMGAGQVLTIAQSLYEIHKATTYPRTDCGYLPVSMREDIPAVFTALTRTDPAMNAIIS  355
            + G++A++VL IAQ+LYE  K T+YPRT C YLP S   ++  VF+A+   D +M ++I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  QLDASTLSRVWNDSQIT--AHHAIIPTRHP-FDMTKLTADELKVYQLIRQYYLAQFLPAQ  412
            + D+   SRVWND+Q+   +HHAIIPT+ + FD++ L  +EL VY++IR+ Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ETDVTDVTFTIGGQVFQATGRVSVVTGWKALFADEK-QAQDQDGNTALPVLKKAETCPVI  471
            E D T V     +++F+A+ + +V++GWK L++ +  ++++ D   ALP LK  +    +
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  472  RAEIQPRQTRPPAPFTEGTLIAAMKNAAAF---IHDPQLKKVLRENAGLGTEATRAGIIE  528
              + + ++T PP+ FTE++L+  M+    F   ++D Q++K+L+   GLGTEATRA II+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  529  alfkrrllarkkknlhaTQLAQELIAGLPDVLTHPGMTALWEQSLDDIARGRTTLDGFMQ  588
             LF    + +K+ ++ AT+ +++LIA +P ++++P  TA WE +L +I  G+ TL  FM 
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  589  KQAQWLAHLVEKGKTQPI---------------RFTLPKTPA--CPRC-GGPMQKRAGKT  630
             Q + +++LV ++K +++               + ++++     CP C  G +++R+ K 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  631  TP---FWGCTRYPACK  643
             P   +WGC+R+P CK
Sbjct  658  NPDKRYWGCSRFPECK  673

43) topB3 in NC_010170


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  428 bits (1611),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 276/679 (41%), Positives = 432/679 (64%), Gaps = 40/679 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SIEQLPIIPQNWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCG  118
             +I  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSASGQS-FTAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + ++++S FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDAYTDDTGRCLQQPVaqraaqqirgagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQ  295
            P+   +  G C +     +A  +    ++++V++ + ER    PPL + L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEA-VKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVSTVLDSLLRTDPSLRPIMDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSAMSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLACGQQKLAATGKQVVVKGWPLVLTEPQPDEDGDAAARSQVLPALR--EGLAC  470
            +D TV ++    + + A+ +  V+ GW ++L       +GD    +  LP L+  + +  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  471  LVADVDLKALKTLPPRPYTQGELVKSM---KGVAKLVTDPRLKQKFRDTVGIGTEATRAN  527
            L  + + K  KT PP  +T++ L+  M   K+  K V D ++++ ++ T G+GTEATRA 
Sbjct  477  LSFNPETK--KTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  528  IISGLIARGYIVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDV  587
            II  L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  588  FIGKQAAWISQLIAQYSIASLSIKVP-----------------QGPACPQC-GAPTRQRS  629
            F++ Q   I++L++Q    +++   P                 ++  CP C  +  RQR+
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  630  GKSGP---FWSCSRYPDCK  645
             K  P   +W+CSR+P+CK
Sbjct  655  FKENPDKRYWGCSRFPECK  673

44) Bxe_A1223 in NC_007951


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  428 bits (1611),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 276/679 (41%), Positives = 432/679 (64%), Gaps = 40/679 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLNGSGVTVTWCIGHLVEAAAPEAYDEQLKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G ++ ++  VTW +GH++  AAP+AY+EQ    
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SIEQLPIIPQNWRVEVKPKTATQFKVVKALLAKATQLVIATDADREGELIAREIIELCG  118
             +I  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI++ CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRAALGKLRPSAETLPMYYSALARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ +   +Y ++LAR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFVSVPYWAIDVSLSASGQS-FTAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +FV+  Y ++ V + ++++S FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDAYTDDTGRCLQQPVaqraaqqirgagsaqVVSVETERVREGPPLLFDLGTLQEVCSKQ  295
            P+   +  G C +     +A  +    ++++V++ + ER    PPL + L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEA-VKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVSTVLDSLLRTDPSLRPIMDQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++++
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSAMSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LS +  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVANLACGQQKLAATGKQVVVKGWPLVLTEPQPDEDGDAAARSQVLPALR--EGLAC  470
            +D TV ++    + + A+ +  V+ GW ++L       +GD    +  LP L+  + +  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  471  LVADVDLKALKTLPPRPYTQGELVKSM---KGVAKLVTDPRLKQKFRDTVGIGTEATRAN  527
            L  + + K  KT PP  +T++ L+  M   K+  K V D ++++ ++ T G+GTEATRA 
Sbjct  477  LSFNPETK--KTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  528  IISGLIARGYIVKKGRAIRASDAAFTLIDAVPAAIADPGTTAVWEQALDMIEAGQLTLDV  587
            II  L+  GY+ KK   I A++ +  LI  +P+ IADP TTA WE AL  IEAG+LTL  
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  588  FIGKQAAWISQLIAQYSIASLSIKVP-----------------QGPACPQC-GAPTRQRS  629
            F++ Q   I++L++Q    +++   P                 ++  CP C  +  RQR+
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  630  GKSGP---FWSCSRYPDCK  645
             K  P   +W+CSR+P+CK
Sbjct  655  FKENPDKRYWGCSRFPECK  673

45) plu1037 in NC_005126


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  427 bits (1609),  Expect = 7e-121, Method: Compositional matrix adjust.
 Identities = 276/678 (41%), Positives = 424/678 (63%), Gaps = 37/678 (5%)

Query  1    MKLFLCEKPSQGRDIAVVLGA-TKRGQGYLTGPGVTVTWAVGHLLETASPEVYGEQYGAP  59
            M+LFLCEKPSQ++DI+ VLG    R +GY+   +  VTWA GH+L  A+P+ YGEQY+  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRASVLPILPASWQMVVKKETADQFTVICRLLKQADEVVIATDADREGEVIARELLDYCQ  119
               S LPILP  WQM V    + QF VI  LL +ADEVVIATDADREGEVIARE+LDYC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FQGKISRLWLSALDEVSIRAALANILPGEQTASLYLAGLGRARADWLIGMNFTRLYTVKA  179
            ++ KISR+W S+LD  S++ AL++I+PG +  +LY AGL+R+RADWL+GMN++R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  180  RECGYS--DILSIGRVQTPSLALVVFRDREIIAFTAKPYWQVVADLQFDGR-IFRADWVP  236
               GY+  +ILSIGR+QTP+L LVV RD+EI +F +  Y  +  D++  ++ +F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AATYCDEEKRCIHQNVAQTVVKLCQQTGTATVLEINTKREKHAAPLAFDLGSLQQLCSKK  296
            +    + +  C + +  +++VK   + +T+ V+  N  R   ++PL++ L++LQ+  +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQ-LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  297  WSMGAQQVLNIAQNLYETHKATTYPRTDCGYLPTAMQAEIPQVLDAVVKSDPAMRIVVDS  356
             +++A +VL+IAQ LYE  K T+YPRT C YLP +  +E+ +V+ A+   D +M  V++ 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  357  LDRTLISRIWNDKKIT--AHHGIIPTKQPC-DMNKMTDDERKVYQLIRQHYLLQFLPLHE  413
             D    SR+WND+++   +HH+IIPTK +  D++ +  +E  VY++IR++Y+ QF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  MDITEATFDIGGQLFRTRGNVVIVPGWKVLFSAGKDESASIGKDDSLGESLPSMVKGNQC  473
             D T    +  ++LF++  +  +++GWKVL++ +  E+  I+     G +LP +   ++ 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDE----GPALPHLKVNDEV  474

Query  474  QVNEATLRMLQTQPSAHFTEGTLIAAMKNAAAF---VSDPQLKKVLKDNAGLGTEATRAG  530
            +         +T P+++FTE++L+  M+    F   V D Q++K+LK   GLGTEATRA 
Sbjct  475  DTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRAT  534

Query  531  VLDTLFKRGYLTKKGKYIHATQIASELIAALPTALTNPGLTALWEQALDDIAQGQAELPD  590
            ++D LF  GY+ KK   I AT+ + +LIA +PT +++P  TA WE AL +I  G+  L++
Sbjct  535  IIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAE  594

Query  591  FMARQVQWTQYLVEQVQAQKVVITPPPSLP-----------------CPVC-GGVTRQR-  631
            FMA Q +    LV Q + + V  + PP                    CP C  G  RQR 
Sbjct  595  FMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRG  654

Query  632  --QGKNGVFWGCIKYPEC  647
              +  +  +WGC ++PEC
Sbjct  655  FKENPDKRYWGCSRFPEC  672

46) YPZ3_0299 in NC_014029


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 266/626 (43%), Positives = 395/626 (64%), Gaps = 27/626 (4%)

Query  1    MQLYLCEKPSQGKDIGAILGA-TQRKQGYLVGAGVIVTWAIGHLLEQAQPETYGEQFGSP  59
            M+L+LCEKPSQ+KDIG +LG    R +GY+  ++ IVTWA+GH+L QA P++YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRESVLPIVPAQWKMAVKKDTADQFAVIRGLLKQVDSVVIATDADREGEVIARELLEHCH  119
               S LPI+P  W+M V    + QF VI++LL + D VVIATDADREGEVIARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVQRLWLSALDEASIRHALANKLPGEKTAPLYEAGLARSRADWMTGMNLTRLYTLKA  179
            +   + R+W S+LD  S++ AL++ +PG     LY+AGLAR+RADW+ GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REQGYG--EVLSIGRVQTPTLALVVNRDRDIANFISKPYWQVRTMLQK-DGIAF------  230
               GYG  ++LSIGR+QTPTL LVV+RD++I  F++  Y  +   ++  D   F      
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  231  PANWVPAVNYCDEEKRCIQQNVAQAVVQLCQQTANAVVLDVGTERKKESAPLAFDLGILQ  290
            P NW  +  YC +      + V   V QL  + + + V+    ERK  ++PL++ L+ LQ
Sbjct  240  PENWRNTDGYCTN-----LEAVKALVKQL--EKSTGKVITSNKERKSTPPPLPYSLSALQ  292

Query  291  QACSRKWGMSANQVLSIAQSLYETHKATTYPRTDCGYLPTSMREEVADVLSAVTRTDPTQ  350
            +  ++K G+SA++VL IAQ+LYE  K T+YPRT C YLP S   EV DV++A+   D + 
Sbjct  293  KEAGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSM  352

Query  351  SESVARLDRTFVSRIWNDKKIT--AHHGIIPTKQP-FDLSKLSADELKVYQLIRQHYLAQ  407
               + + D    SR+WND+++   +HH+IIPTK + FDLS L  +EL VY++IR++Y+AQ
Sbjct  353  LSVIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQ  412

Query  408  FLPLHEVDVTEATFNIGGQLFRTRGKVEAVAGWKALFQHDASEAKEEPADTDDVRLPALV  467
            F P  E D T    +  ++LF++  +   ++GWK L+  D  E+ +   +     LP L 
Sbjct  413  FYPDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLK  469

Query  468  KGEAVSVAGAELKTLQTKPPGHFTDGTLIAAMKNAAAF---VSDPQLKKVLKENAGLGTE  524
              + V   + +  T +T PP +FT+++L+  M+    F   V D Q++K+LK   GLGTE
Sbjct  470  VNDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTE  529

Query  525  ATRAGILETLFKRGYLEKKGKFLLSTPIAGELIDALPTALTNPGMTALWEQALDEIAQGQ  584
            ATRA I++ LF  GY+EKK   + +T  + +LI  +PT +++P  TA WE AL  I  G+
Sbjct  530  ATRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGK  589

Query  585  MTLDTFMSRQAQWTGHLVEKGKAQAV  610
            +TL  FM+ Q +   +LV ++K +AV
Sbjct  590  LTLAEFMAYQQKVITELVGQAKKDAV  615

47) NH44784_008881 in NC_021285


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 273/677 (41%), Positives = 425/677 (63%), Gaps = 36/677 (5%)

Query  1    MRLFLCEKPSQGKDIGRILGA-TQRGEGCLSGSGVIVTWCIGHLVEAAAPEVYDAALKRW  59
            MRLFLCEKPSQ+KDIG++LG    R +G +  ++ IVTW +GH++  AAP+ Y+      
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -SLEQLPIIPQQWRVEVKPKTATQFKVVKALLAKATHLVIATDADREGELIAREIIDLCG  118
             ++  LPI+P+ W+++V PK + QFKV+K+LLAKA ++VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSAQARSRADWLVGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++ AL+ + P+ D   +Y ++ AR+RADWLVGMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGY--DGVLSVGRVQTPTLKLVVDRDREIAAFKSVPFWAIDVSLSAGGQA-FSAQWVP  235
              AGY  + +LS+GR+QTPTLKLVV+RD+EI +F +  + ++ V + +++++ F++ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDGCIDDAGRCLqqpvaqqaaqqiraagsaqVVSVETKRVREGPPLLFDLGTLQEVCSKQ  295
            P+   +  G C  +  A +A  +    ++++V++ +  R    PPL + L++LQ   +K+
Sbjct  240  PENWRNTDGYC-TNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLEIAQALYETHKATTYPRSDSGYLPESMFAEVPTVLDSLLKTDPSLRPIMGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S  +EV  V+ ++   D S+ +++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRSQRSRAWNDGKVT--AHHGIIPTLEPA-NLSVMSEKELAVYRLIRAHYLAQFLPHHE  412
             D  ++SR WND +V   +HH+IIPT  +  +LSV+  +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAELSCGQQKLAATGKQVVAQGWRLVLAEPQADEDGDDAARSQVLPALREGMACQV  472
            +D TV E+    + + A+ +  V  GW+++L+      +GD+   +  LP L+     + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  473  AEAEIKALKTMPPKPYTQGELVKSM---KGVAKLVTDPRLKQKLKETVGIGTEATRANII  529
               +  + KT PP  +T++ L+  M   K+  K V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  SGLIARGYLVKKGRSIRASDAAFTLIDAVPTAIADPGTTAVWEQALDMIEAGQLTLDVFI  589
              L+  GY+ KK   I A++ +  LI  +PT IADP TTA WE AL  IEAG+LTL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  GKQAAWISQLIAQ-----------------YGSTSLSIKVPQGPACPQC-GATTRQRTGK  631
            + Q   I++L++Q                  G+   ++   ++  CP C  +  RQR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  TGP---FWSCSRYPDCK  645
              P   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

48) PputW619_3423 in NC_010501


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  423 bits (1591),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 263/613 (43%), Positives = 407/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKILGA-NRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+K+LG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+PE W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALARLLPGQDTFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+ ++PG+D  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAG-LVFNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A+  VF + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEGICDDQGRCLNQALAQQAATDIGNARSARVLKVTTERVREAAPLPFDLGTLQELCSKK  295
            PE   + +G C N    +    ++ ++ +++V+    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPVSQHSEAPAILTALQRVDSSLAPLQAH  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ SE   +++A+Q +D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVT--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V   +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQAEFDCAGHALRAVGKQIVEPGWRRALPEALAPAKGREAPPAQVLPTLCESQDCSV  472
            YD T  E +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L  +++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEDFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L +F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

49) Alide_2714 in NC_014910


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  423 bits (1592),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 274/680 (41%), Positives = 433/680 (64%), Gaps = 41/680 (6%)

Query  1    MRVFLCEKPSQGKDIARVLGA-GQRSNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRW  59
            MR+FLCEKPSQ+KDI++VLG  G R +G +  ++ +VTW +GH++   +P++YGEQY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   A-IEQLPIVPERWRVEPKVATAAQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCG  118
            + I  LPI+PE W+++     + QFKV++ L+AKA+E+VIATDADREGE+IAREI+D CG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARSRADWLIGMNLSRLFTLLG  178
            YR  I R+W S+L+  S++KAL+++ P+ +   LY ++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGYT--GVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAADVLLSHAGQS-FTASWIP  235
              AGY    +LS+GR+QTPTLKLVV+RD+EI  FV+  Y +  V +  A++S FT+ W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEGSTDAAGRCLQQPVAQQAVDRIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSRQ  295
            PE   ++ G C +    +  V ++  +  ++V++ + ER   +PPLP+ L++LQ   +++
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMLAEVPAVLDALLATEPSLRPLLGQ  355
            LGL     L IAQ+LYE  K T+YPR+   YLP S ++EV  V+ A+ + + S+ +++ +
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDRNQRSRAWNDGKVT--AHHGIIPTLEPA-KLLAMSEKELAVYQLIRGRYLAQFLPHHE  412
             D +++SR WND +V   +HH+IIPT  +   L  +  +EL+VY++IR+RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVTQL-ACGGQSLVAVGKQIAVI-GWRQVLATPEPDAADGEEAQRSQVLPPLASGSR  470
            +D TV ++ AC+   L   ++Q +VI GW+ +L+    D  +G++ + +  LP L     
Sbjct  419  YDSTVVEVEACS--HLFKASNQSPVISGWKVLLGK---DVFEGDQIDEGPALPHLKVNDE  473

Query  471  CGVEQVELKALRTLPPKPYTQGELVKVM---KGVAKLVDDPRLKQKLKETTGIGTEATRA  527
             +    +  + +T PP  +T++ L+  M   K+  K V+D ++++ LK T G+GTEATRA
Sbjct  474  VDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRA  533

Query  528  STIKGLLDRGYLLKKGRAIRASDAAFTLIDAVPAAIADPGMTAIWEQALDMIEAGQMTLD  587
            + I  L++ GY+ KK   I A++ +  LI  +P+ IADP  TA WE AL  IEAG++TL 
Sbjct  534  TIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLA  593

Query  588  TFIAKQSTWVAQLVQQHRGATlsialppsppcpqcgap------------------MRQR  629
             F+A Q   +++LV Q +  +++ A PP    +                       +RQR
Sbjct  594  EFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQR  653

Query  630  TGKSGA---FWSCSRYPDCK  646
              K  +   +W+CSR+P+CK
Sbjct  654  GFKENPDKRYWGCSRFPECK  673

50) Pput_1814 in NC_009512


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  422 bits (1588),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 260/613 (43%), Positives = 408/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDVCDDQGRCLKQDLAQRAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C + +  +    ++  + T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++ + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  NGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +TL EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

51) XNC1_3538 in NC_014228


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  422 bits (1587),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 273/676 (41%), Positives = 443/676 (66%), Gaps = 36/676 (5%)

Query  1    MPLYLCEKPSQARDIARVLGV-KQRGQGYLFGGSITVTWAIGHLLEMAAPEHYGEQFGPP  59
            M L+LCEKPSQA+DI++VLGV   R +GY+  G   VTWA+GH+L  AAP+ YGEQ++  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WRMEPLPVLPAQWQWTVKKETADQFAVIRQLLKQADEVIIATDADREGEVIARELLEYCR  119
              + +LP+LP  WQ  V    + QF VI+ LL +ADEV+IATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  FTGPVRRLWLSALDETSIRQALAAILPGEQTESLWQAGLGRARADWLTGINLTRLYTLKA  179
            +   + R+W S+LD  S+++AL++I+PG + E+L QAGL+R+RADWL G+NL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  QEQGFG--EVLSIGRVQTPTLALVVNRDNDIARFEQKPYWQVMATLQKDDIS-FRAKWLP  236
               G+G  ++LSIGR+QTPTL LVV+RD++I  F    Y  +   ++  D S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLW-Q  238

Query  237  APDD-GDEEKRCIREDIaqrvvqrcqqaqdavvTELTQKREKTPPPLCFDLGTLQQVASR  295
             P++  + +  C   +  + +V++ +++ + V+T   + R  TPPPL + L++LQ+ A++
Sbjct  239  VPENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS-NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  QWGMGAGQVLTIAQSLYETHKATTYPRTDCGYLPVSMRENIPAVFTALTRTDPAMSAIIS  355
            + G++A++VL IAQ+LYE  K T+YPRT C YLP S   ++  VF+A+   D +M ++I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  QLDASAFSRVWNDSQIT--AHPAIIPTRHT-FDMTKLTADELKVYQLIRHYYLAQFLPAQ  412
            + D+   SRVWND+Q+   +H AIIPT+ + FD++ L  +EL VY++IR+ Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ETDVTDVTFTIGGQVFQAKGRVSVVTGWKALFADEK-QAQEQEDNTALPALKKEEISPVL  471
            E D T V     +++F+A  + +V++GWK L++ +  ++++ ++  ALP LK ++    L
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTL  477

Query  472  RAEIQPRQTRPPAPFTEGTLIAAMKNAAAF---IHDPQLKKVLRESAGLGTEATRAGIIE  528
              + + ++T PP+ FTE++L+  M+    F   ++D Q++K+L+ + GLGTEATRA II+
Sbjct  478  SFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIID  537

Query  529  alfkrrllarkkknlhaTQLAQELIAGLPDVLTHPGMTALWEQSLDDIARGRTTLDGFMQ  588
             LF    + +K+ ++ AT+ +++LIA +P ++++P  TA WE +L +I  G+ TL  FM 
Sbjct  538  RLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

Query  589  KQAQWLAHLVEKGKTQPI---------------RFTLPKTPA--CPRC-GGPMQKRAGKT  630
             Q + +++LV ++K +++               + ++++     CP C  G +++R+ K 
Sbjct  598  YQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKE  657

Query  631  TP---FWGCTRYPACK  643
             P   +WGC+R+P CK
Sbjct  658  NPDKRYWGCSRFPECK  673

52) L483_22505 in NC_021491


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  421 bits (1586),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 259/613 (43%), Positives = 406/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-TRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDTWKMLVKPKTASQFKAVKRLLGEARELIIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E++IATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLNQGLAQQAATAIGNAGTARAVKVTTERMREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C N    +     + ++ T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPVLREGQDCTV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

53) YSA_08732 in NC_017986


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  421 bits (1586),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 259/613 (43%), Positives = 407/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLKQDLAQRAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C + +  +    ++  + T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++ + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  NGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

54) topB in NC_002947


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  420 bits (1581),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 259/613 (43%), Positives = 406/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C +    +    ++  + T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++ + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  HGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

55) topB in NC_017530


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  420 bits (1582),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 258/613 (43%), Positives = 406/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLKQSLAQQAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C +    +    ++  + T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILSALQRADASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   +++A+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++ + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  HGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

56) Hneap_1612 in NC_013422


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  419 bits (1578),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 262/614 (43%), Positives = 410/614 (67%), Gaps = 12/614 (1%)

Query  1    MRVYLCEKPSQARDIAAVLGI-QSKDKSSITTADGVVTWAFGHLLEQAPPDAYDDSLKRW  59
            MR++LCEKPSQA+DI+ VLG+  +++ + +  +D +VTWAFGH+L QA+PDAY++     
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   A-LASLPIAPTQWKVEVKSSAKDQFKAIATLLKRATEVVIATDADREGEMIARELMAFVG  118
            + +++LPI P  W+++V +    QFK I +LL +A EVVIATDADREGE+IARE++ + G
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  FKGKVQRLWlsaldaasvkkalaalkpsaETAGLYQSALGRSRADWLVGMNLTRAFTLA-  177
            ++ K+ R+W S+LD+ SVKKAL+++ P+ +   LYQ++L+R+RADWLVGMNL+RA+T A 
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  178  GCSQGGEGVRSVGRVQTPTLSLVVARDRQIEHFKPVPYFELFGFFEAGQS--FSTKWKVP  235
            + + G E + S+GR+QTPTL LVV RD++I+ F P  Y+ L   FE+++   F+T W+VP
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  236  EGAGDDAGRCVDQSIVDAVASKITGKTGTVSQYETKRISENPPLPFSLSTLQKTCSAKFG  295
            E   +  G C +   V A+  ++   TG V   +  R S  PPLP+SLS+LQK  + K+G
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKLG  300

Query  296  LGAQEVLDIAQALYETHKATTYPRSDCNFLPEEQFQEASSIVTALAKSDTEVQGIVDLLD  355
            L+A  VL IAQ+LYE  K T+YPR+ C +LP  Q  E   + +A+   D  + ++++  D
Sbjct  301  LSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKAD  360

Query  356  FSRKSPAWNTKKIT--AHHAIIPTQTPP-NMDAMSDNERRVYELIRRQYLAQFLPNYEYD  412
              R+S  WN +++   +HHAIIPT+++  ++  +  NE  VY +IR +Y+AQF P++EYD
Sbjct  361  PERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEYD  420

Query  413  RTQIGISIEGELFQTTGKIDQVTGWRVLFGKADASDDEPDDEVQTLPALTQGQTLPLSHT  472
             T + +   ++LF+++ +   ++GW+VL+GK D  +++  DE  +LP L   + +     
Sbjct  421  STVVEVEACSHLFKASNQSPVISGWKVLLGK-DVFEGDQIDEGPALPHLKVNDEVDTLSF  479

Query  473  EIAAKQTKPPSRYTEGTLIDAMQTIG---KNITDPRLKAILKENSGIGTEATRAGIIANL  529
            +  +K+T PP+R+TE++L+D MQT+    KN+ D +++ ILK   G+GTEATRA II  L
Sbjct  480  NPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRL  539

Query  530  IERGFITKKGKQVISSDVGRQLIDALPDSVKSPALTALWEQSLEEIAEGKRELAGFEADV  589
            +E G++ KK  ++ +++ GR+LI  +P  +  P  TA WE +L  I  GK  LA F A  
Sbjct  540  FEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQ  599

Query  590  VKFITAIIDQIKKQ  603
             K IT +++Q KK+
Sbjct  600  QKVITELVGQAKKD  613

57) PputGB1_3624 in NC_010322


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  419 bits (1577),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 260/613 (43%), Positives = 406/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIEVQLEHAAQR-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A +  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLKQDLAQQAATDIGNAATARAVKVATERVREAAPLPFDLGTLQELCSKK  295
            PE+  + +G C + +  +    ++ + +T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEK-STGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLTPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALCEGQDCTV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L   ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  HGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +TL EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSTWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

58) Sbal117_4706 in NC_017580


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  419 bits (1579),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 277/675 (42%), Positives = 420/675 (63%), Gaps = 38/675 (5%)

Query  1    MRLFLCEKPSQAKDIASVLGC--KRGDGVFTGDGIAVTFCVGHVLQQAEPENYNPDFETW  58
            MRLFLCEKPSQAKDI+ VLG    R DG F  ++  VT   GH+L QA P+ Y  ++   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  59   -NIVDLPIIPTVWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVIAREVLEYVN  117
             NI  LPI+P VW+M V+PK   QF ++K  LAKA EV+IATDADREGEVIARE+L+Y  
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  118  YKGPIQRLWLSALDDASIKKALASLRPNHETAKLYDAGLGRSRGDWLIGMNMTRLCT-LL  176
            Y+  I R+W S+LD  S+KKAL+S+ P  +  +LY+AGL+R+R+DWL+GMN++R  T   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  177  SREYGYQGAFSVGRVQTPTLRLVVDRDRQVEQFEPQSYYDITGLFNAT--IPFKAKWQVP  234
            S  YG +  +S+GR+QTPTL+LVV+RD++++ F P +YY ++  F+++    F + WQVP
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  235  DNLGDEQGRCLQVTTVDHVLSQCRDQPGTVTQFDTKRQKSKHPPL-FFLGSLQKAMSAKF  293
            +N  + +G C ++ +V  ++ Q     G V     K +KS  PPL + L++LQK  + K+
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVIT-SNKERKSTPPPLPYSLSALQKEAGKKL  299

Query  294  GYGAKEVLDIAQSLYEKYKVTTYPRTDCPYLPLSQKKEVGSILDKLKVVP-TFAAWCSVA  352
            G +A  VL IAQ+LYEKYK+T+YPRT C YLP SQ  EV  ++  ++ +  +  +    A
Sbjct  300  GLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKA  359

Query  353  DVNETSACWNDKKIT--AHHGIIPLPVTP-KLHEMNEKELNLYHAIVQRYLAQFYPVAED  409
            D +  S  WND+++   +HH+IIP   +   L  ++ +EL +Y+ I +RY+AQFYP  E 
Sbjct  360  DPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEY  419

Query  410  DATTIELMVGSQSFKATGKVERVKGWRLVTGKDS-EDETADDSSNLPLLSIGQTLTA-QF  467
            D+T +E+   S+ FKA+ +   + GW+++ GKD  E++  D+++ LP L + + + +  F
Sbjct  420  DSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSF  479

Query  468  QREDKRTKPPGRFTEGTLIDAMSNIAKF---ESDPKLKSILKETSGIGTEATRANIIDTL  524
            + E K+T PP RFTE++L+D M  +  F     D +++ ILK T G+GTEATRA IID L
Sbjct  480  NPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRL  539

Query  525  KARGFVTVTGKQLISSEAGRSLIDALPDVLTRPAMTALWEQALDEIALGNGSLDDFMARQ  584
               G++     ++ ++E GR+LI  +P +++ P  TA WE AL  I  G+ +L +FMA Q
Sbjct  540  FEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQ  599

Query  585  STFITQLVSMFKQGQYT-LKLPKVLAVTLP------------CPVC------QKSMKQLS  625
               IT+LV+  K++     + PK    +              CP C      Q++ K+ +
Sbjct  600  QKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENP  659

Query  626  GKSGKFWVCEDKEQC  640
            +K  ++W C    +C
Sbjct  660  DK--RYWGCSRFPEC  672

59) DSC_04250 in NC_016147


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  419 bits (1576),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 272/677 (41%), Positives = 429/677 (64%), Gaps = 36/677 (5%)

Query  1    MRVVLCEKPSQGKDIARVLGA-TQRGNGCYTGSGLGVTWGIGHLIETAPPEAYGEQYKRW  59
            MR+ LCEKPSQ+KDI++VLG    R +G +  ++  VTW++GH++  A+P+AYGEQY   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   A-LEPLPIIPQHWQVVVKAKTATQFKVVKQLLAQATDLVIATDADREGEMIARELIDYCG  118
            + + +LPI+P+ WQ+ V +K + QFKV+K LLA+A ++VIATDADREGE+IARE++DYCG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNDASIRKALGALKPSGETLPLYYSALARSRADWLIGMNLSRLFTVLG  178
            YR  I R+W S+L+  S++KAL+++ P+ +   LY ++LAR+RADWL+GMNLSR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTA-A  179

Query  179  RQAGYS--GVLSVGRVQTPTLKLVVDRDREIARFVSVPFWTIEVLLAHAGQS-FVANWTP  235
              AGY+   +LS+GR+QTPTLKLVV+RD+EI  FV+  + T+ V +  A++S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PAGCTDDAGRCLQQPVAQQADERMRAAVSAQVVSVETERMREGPPLPFDLGTLQEVCSKQ  295
            P    +  G C +    +    ++  + +++V++ + ER    PPLP+ L++LQ   +K+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLDVQETLDIAQSLYETHKATTYPRSDSGYLPENMLAEVPTVLDSLVKTDPSLRPLVAK  355
            LGL     L IAQ+LYE  K T+YPR+   YLP + ++EV  V+ ++   D S+ +++ K
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPHQRSRAWNDAKVT--AHHGIIPTLEPA-NLSALNDKELAVYRLIRAHYLAQFLPHHE  412
             DP+++SR WND +V   +HH+IIPT  +  +LS L+ +EL+VYR+IR +Y+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  FDRTVAQFACAGQSLTVVGKQIVVTGWRQVLaapapdepdedaQRSQVLPALHAGLSCPI  472
            +D TV +    ++ +    +  V++GW+ +L        +++ + +  LP L        
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLL--GKDVFEGDQIDEGPALPHLKVNDEVDT  476

Query  473  GAVDLKALKTLPPKPYTQGELVKAM---KGVARLVTDPRLKQKLKDTTGIGTEATRANII  529
             + +  + KT PP  +T++ L+  M   K+  + V D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  NgllgrgyllkkgrAIRASDAAFTLIDAVPPAIADPGTTAVWEQALDMIEARQMTLDAFI  589
            + L+  GY+ KK   I A++ +  LI  +P  IADP TTA WE AL  IEA ++TL  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  AKQSAWVAQLVQQYRTATLSIQLPPAPA-----------------CPQC-GSPMRQRTGK  631
            A Q   +++LV Q +  +++   PP  +                 CP C  + +RQR  K
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  SGA---FWSCSRYPDCK  645
              +   +W+CSR+P+CK
Sbjct  657  ENPDKRYWGCSRFPECK  673

60) PPS_3429 in NC_015733


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  417 bits (1571),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 261/613 (43%), Positives = 407/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+PE W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRGIADFVPVPFWAIDVQLEHAGFG-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A+ + F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDACDDQGRCLNQALAQQAAVDIGNAGTARAVKVTTERVREAAPLPFDLGTLQELCSKK  295
            P++  + +G C N    +    ++ + +T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEK-STGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRSDASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCTV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +TL EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

61) B479_17060 in NC_019905


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  417 bits (1570),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 261/613 (43%), Positives = 407/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPEKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+PE W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGFG-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A+ + F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDACDDQGRCLNqalaqqaaaDIGNAGTARAVKVTTERVREAAPLPFDLGTLQELCSKK  295
            P++  + +G C N    +    ++ ++ T++ +    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRSDASLAPLQPY  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCTV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMTLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +TL EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

62) Psyr_1473 in NC_007005


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  416 bits (1566),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 279/677 (42%), Positives = 426/677 (63%), Gaps = 35/677 (5%)

Query  1    MRLYLCEKPSQGKDIAAVLGA-KTRGDGCIKGNGVAVTWGIGHLLETAPPDAYGEHLKNW  59
            MRL+LCEKPSQ+KDI+ VLG    R DG ++  +  VTW++GH+L  A+PDAYGE+  + 
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCG  118
            + + +LPILP  W++ V PK + QFK++K LL +A E+VIATDADREGE+IARE+++YCG
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLG  178
            YR  I R+W S+L+  S+++AL+++  G +   LY ++LAR+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQAGYT--GVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQS-FLAKWVA  235
              AGY    +LS+GR+QTPTL+LVV+RD++I  F+P  + ++ V++ TA++S F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  DEYLVDEEGRCLDqaaaaaalaalkssqaasTVSVDTKRGKDPAPLPFDLSTLQEVCSAK  295
             E   + +G C +   A  AL       ++  ++ +  R   P+PLP+ LS+LQ   + K
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQL  355
            +G++    L +AQ+LYE  K T+YPRT C YLP S   EV  V+ A++  D S+   ++ 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  IDPEQRSRAWNDKKITG-PHHGIIPTLEPA-NLSAMSEKERKVYELIRAHFLAQFLPTHE  413
             DPE++SR WND+++   +HH+IIPT  +  +LS +  +E  VY +IR +++AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  414  YDRTVATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEANDSGGRSQILPVLQIGTRCDV  473
            YD TV   E  + L++A  +  VI+GWKVL++    E  +   G +  LP L++    D 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  474  QDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVK---DPRLAQKLKETTGIGTEATRAGTI  530
              ++  + KT PP  +TE++L+  M+T+  ++K   D ++ + LK T G+GTEATRA  I
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  531  QGLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLDDFI  590
            + L++ G + KK S + ATE + +LI  +P  +ADP TTA WE AL+ IE G LTL +F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  591  ARQSSWITRLVEQYKGTTLSIKVP-----------------EGPKCPLCSAKTSQRKG--  631
            A Q   IT LV Q K  +++   P                 E+  CP C     +++G  
Sbjct  597  AYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFK  656

Query  632  --SSGVFWACSRYPECK  646
              +   +W+CSR+PECK
Sbjct  657  ENPDKRYWGCSRFPECK  673

63) Sbal_4425 in NC_009036


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  416 bits (1564),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 278/675 (42%), Positives = 419/675 (63%), Gaps = 38/675 (5%)

Query  1    MRLFLCEKPSQAKDIASVLGC--KRGDGVFTGDGIAVTFCVGHVLQQAEPENYNPDFETW  58
            MRLFLCEKPSQAKDI+ VLG    R DG F  ++  VT   GH+L QA P+ Y  ++   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  59   -NIVDLPIIPTVWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVIAREVLEYVN  117
             NI  LPI+P VW+M V+PK   QF ++K  LAKA EV+IATDADREGEVIARE+L+Y  
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  118  YKGPIQRLWLSALDDASIKKALASLRPNHETAKLYDAGLGRSRGDWLIGMNMTRLCT-LL  176
            Y+  I R+W S+LD  S+KKAL+S+ P  +  +LY+AGL+R+R+DWL+GMN++R  T   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  177  SREYGYQGAFSVGRVQTPTLRLVVDRDSQVEQFEPQSYYDITGLFNAT--IPFKAKWQVP  234
            S  YG +  +S+GR+QTPTL+LVV+RD +++ F P +YY ++  F+++    F + WQVP
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  235  DNLGDEQGRCLQVTTVDHVLSQCRDQPGTVTQFDTKRQKSKHPPL-FFLGSLQKAMSAKF  293
            +N  + +G C ++ +V  ++ Q     G V     K +KS  PPL + L++LQK  + K+
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVIT-SNKERKSTPPPLPYSLSALQKEAGKKL  299

Query  294  GYGAKEVLDIAQSLYEKYKVTTYPRTDCPYLPLSQKEEVGSILDKLKVVP-AFAAWCSAA  352
            G +A  VL IAQ+LYEKYK+T+YPRT C YLP SQ  EV  ++  ++ +  +  +    A
Sbjct  300  GLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKA  359

Query  353  DVNETSACWNDKKIT--AHHGIIPLPVTP-KLHEMNEKELNLYHAIVQRYLAQFYPVAED  409
            D +  S  WND+++   +HH+IIP   +   L  ++ +EL +Y+ I +RY+AQFYP  E 
Sbjct  360  DPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEY  419

Query  410  DATTIELMVGSQSVKATGKVERVKGWRLVTGKDS-EDETTDDSANLPLLSIGQTLTA-QF  467
            D+T +E+   S+  KA+ +   + GW+++ GKD  E++  D+++ LP L + + + +  F
Sbjct  420  DSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSF  479

Query  468  QREDKRTKPPGRFTEGTLIDAMSNIAKF---ESDPKLKSILKETSGIGTEATRANIIDTL  524
            + E K+T PP RFTE++L+D M  +  F     D +++ ILK T G+GTEATRA IID L
Sbjct  480  NPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRL  539

Query  525  KARGFVTVTGKQLISSEAGRSLIDALPDVLTRPAMTALWEQALDEIALGNGSLDDFMARQ  584
               G++     ++ ++E GR+LI  +P +++ P  TA WE AL  I  G+ +L +FMA Q
Sbjct  540  FEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQ  599

Query  585  STFITQLVSMFKQGQYTLKLP---------KVLAVTLP----CPVC------QKSMKQLS  625
               IT+LV+  K++      P         K  AV+      CP C      Q++ K+ +
Sbjct  600  QKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENP  659

Query  626  GKNGKFWVCEDKEQC  640
            +K  ++W C    +C
Sbjct  660  DK--RYWGCSRFPEC  672

64) topB in NC_008027


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  415 bits (1562),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 262/611 (43%), Positives = 404/611 (67%), Gaps = 15/611 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-QRRGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    R DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   S-LDDLPIIPEKWKMTVKPKTASQYKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
            + +  LPI+PE W+M V PK + Q+K +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALARLLPGQETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+ ++PG++  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLESAGN-VFNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E+A++ VF + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLKQALAQQAAHDMQAAGSARVMKIATERVRETAPLPFDLGTLQEVCSKK  295
            PE+  + +G C +    +    +++ + +++V+    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKS-TGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETHKLITYPRSDSGYLPLSQHGEAPGILAALQRADASLAPLQPY  355
            LGL+A   L IAQ+LYE  K+ +YPR+   YLP SQ +E  +++AA+Q  D S+ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPQRRSRAWNDQKVS--AHHGIIPTAAAS-DPSRLPPKYKAVYTLIRARYLAQFLPNHE  412
             DP+R+SR WND++V+  +HH+IIPT A++ D S L  +  +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHTLRAVGKQIIEPGWRRALPEALMPQKGREAPPAQVLPALREGQDCAV  472
            YD T  + +  +H ++A  +  + +GW+  L   +      +  PA  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQNGEMSLDEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  ++ G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLV  600
            A Q   +  LV
Sbjct  597  AYQQKVITELV  607

65) Sbal117_4782 in NC_017578


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  414 bits (1560),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 277/675 (42%), Positives = 418/675 (62%), Gaps = 38/675 (5%)

Query  1    MRLFLCEKPSQAKDIASVLGC--KRGDGVFTGDGIAVTFCVGHVLQQAEPENYNPDFETW  58
            MRLFLCEKPSQAKDI+ VLG    R DG F  ++  VT   GH+L QA P+ Y  ++   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  59   -NIVDLPIIPTAWKMLVSPKTKAQFAIVKKQLAKATEVIIATDADREGEVIAREVLEYVN  117
             NI  LPI+P  W+M V+PK   QF ++K  LAKA EV+IATDADREGEVIARE+L+Y  
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  118  YKGPIQRLWLSALDDASIKKALASLRPNHETAKLYDAGLGRSRGDWLIGMNMTRLCT-LL  176
            Y+  I R+W S+LD  S+KKAL+S+ P  +  +LY+AGL+R+R+DWL+GMN++R  T   
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYTAAY  180

Query  177  SREYGYQGAFSVGRVQTPTLRLVVDRDSQVEQFEPQSYYDITGLFNAT--IPFKAKWQVP  234
            S  YG +  +S+GR+QTPTL+LVV+RD +++ F P +YY ++  F+++    F + WQVP
Sbjct  181  SAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVP  240

Query  235  DNLGDEQGRCLQVTTVDHVLSQCRDQPGTVTQFDTKRQKSKHPPL-FFLGSLQKAMSAKF  293
            +N  + +G C ++ +V  ++ Q     G V     K +KS  PPL + L++LQK  + K+
Sbjct  241  ENWRNTDGYCTNLEAVKALVKQLEKSTGKVIT-SNKERKSTPPPLPYSLSALQKEAGKKL  299

Query  294  GYGAKEVLDIAQSLYEKYKVTTYPRTDCPYLPLSQKEEVGSILDKLKVVP-AFAAWCSAA  352
            G +A  VL IAQ+LYEKYK+T+YPRT C YLP SQ  EV  ++  ++ +  +  +    A
Sbjct  300  GLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKA  359

Query  353  DVNETSACWNDKKIT--AHHGIIPLPVTP-KLHEMNEKELNLYHAIVQRYLAQFYPVAED  409
            D +  S  WND+++   +HH+IIP   +   L  ++ +EL +Y+ I +RY+AQFYP  E 
Sbjct  360  DPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEY  419

Query  410  DATTIELMVGSQSVKATGKVERVKGWRLVTGKDS-EDETTDDSANLPLLSIGQTLTA-QF  467
            D+T +E+   S+  KA+ +   + GW+++ GKD  E++  D+++ LP L + + + +  F
Sbjct  420  DSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSF  479

Query  468  QREDKRTKPPGRFTEGTLIDAMSNIAKF---ESDPKLKSILKETSGIGTEATRANIIDTL  524
            + E K+T PP RFTE++L+D M  +  F     D +++ ILK T G+GTEATRA IID L
Sbjct  480  NPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRL  539

Query  525  KARGFVTVTGKQLISSEAGRSLIDALPDVLTRPAMTALWEQALDEIALGNGSLDDFMARQ  584
               G++     ++ ++E GR+LI  +P +++ P  TA WE AL  I  G+ +L +FMA Q
Sbjct  540  FEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMAYQ  599

Query  585  STFITQLVSMFKQGQYTLKLP---------KVLAVTLP----CPVC------QKSMKQLS  625
               IT+LV+  K++      P         K  AV+      CP C      Q++ K+ +
Sbjct  600  QKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTCKEGRLRQRGFKENP  659

Query  626  GKNGKFWVCEDKEQC  640
            +K  ++W C    +C
Sbjct  660  DK--RYWGCSRFPEC  672

66) AvCA6_27190 in NC_021150


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  414 bits (1558),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 256/613 (42%), Positives = 402/613 (66%), Gaps = 15/613 (2%)

Query  4    MRLFLCEKPSQAKDIAKVLQA-TRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRW  62
            MRLFLCEKPSQAKDI+KVL     R DG     D  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  63   -DLSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCR  121
             ++S LPI+PE W+M V PK + Q+KVIK LL+   E++IATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  122  YRGPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLG  181
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  182  RQSGY--QGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQL-LAEGTPFTAQWRA  238
              +GY  + +LS+GR+QTPTL+LVV+RD+ I  FVP    ++ V++  A+ + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  239  PEDACDDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKK  298
            PE+  + +G C + E  +   +++ + +++++++ + ER    PPLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  299  LGLGAQETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHH  358
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA++  D ++ ++++ 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  359  IDPRRRSRAWNDARVG--AHHGIIPTAAAQ-SLDRLVGKQCAVYTLIRARYLAQFLPNHE  415
             DP R+SR WND +V   +HH+IIPT A++  L  L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  416  YDRTQADFDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAV  475
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  P+  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  476  AEVTLKDLWTQPPKPYTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGII  532
                     T PP  +TE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  533  QALIERGYLLKQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFV  592
            + L+E GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  593  AKQSAWMSKLIER  605
            A Q   ++ L+ +
Sbjct  597  AYQQKVITELVGQ  609

67) AvCA_27190 in NC_021149


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  414 bits (1558),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 256/613 (42%), Positives = 402/613 (66%), Gaps = 15/613 (2%)

Query  4    MRLFLCEKPSQAKDIAKVLQA-TRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRW  62
            MRLFLCEKPSQAKDI+KVL     R DG     D  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  63   -DLSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCR  121
             ++S LPI+PE W+M V PK + Q+KVIK LL+   E++IATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  122  YRGPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLG  181
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  182  RQSGY--QGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQL-LAEGTPFTAQWRA  238
              +GY  + +LS+GR+QTPTL+LVV+RD+ I  FVP    ++ V++  A+ + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  239  PEDACDDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKK  298
            PE+  + +G C + E  +   +++ + +++++++ + ER    PPLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  299  LGLGAQETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHH  358
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA++  D ++ ++++ 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  359  IDPRRRSRAWNDARVG--AHHGIIPTAAAQ-SLDRLVGKQCAVYTLIRARYLAQFLPNHE  415
             DP R+SR WND +V   +HH+IIPT A++  L  L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  416  YDRTQADFDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAV  475
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  P+  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  476  AEVTLKDLWTQPPKPYTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGII  532
                     T PP  +TE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  533  QALIERGYLLKQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFV  592
            + L+E GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  593  AKQSAWMSKLIER  605
            A Q   ++ L+ +
Sbjct  597  AYQQKVITELVGQ  609

68) Avin_27190 in NC_012560


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  414 bits (1558),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 256/613 (42%), Positives = 402/613 (66%), Gaps = 15/613 (2%)

Query  4    MRLFLCEKPSQAKDIAKVLQA-TRRGDGCWLGPDLAVTWCIGHLLETAPPDAYDARYKRW  62
            MRLFLCEKPSQAKDI+KVL     R DG     D  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  63   -DLSDLPIVPEHWKMLVKPKTASQYKVIKRLLGECRELIIATDADREGEMIARELVEHCR  121
             ++S LPI+PE W+M V PK + Q+KVIK LL+   E++IATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  122  YRGPIRRLWLSALDDASIRKALAALKPGTETFSLYHSALGRSRADWLIGMNMSRLFTLLG  181
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  182  RQSGY--QGVLSVGRVQTPTLRLVVDRDRSIADFVPVPWWAIEVQL-LAEGTPFTAQWRA  238
              +GY  + +LS+GR+QTPTL+LVV+RD+ I  FVP    ++ V++  A+ + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  239  PEDACDDQGRCLKQELAQQAAQDMRHAGSARLVALKTERIREMPPLPFDLGTLQEICSKK  298
            PE+  + +G C + E  +   +++ + +++++++ + ER    PPLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQL-EKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  299  LGLGAQETLDIAQALYETHKVITYPRSDCGYLPQSQHGEAPAILAALERTDPALAGLMHH  358
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E   ++AA++  D ++ ++++ 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  359  IDPRRRSRAWNDARVG--AHHGIIPTAAAQ-SLDRLVGKQCAVYTLIRARYLAQFLPNHE  415
             DP R+SR WND +V   +HH+IIPT A++  L  L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  416  YDRTQADFDCAGHALRAVGKRIVEPGWRRALPEALTPAKGRETPPSQELPALREGQDCAV  475
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  P+  LP L+  ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  476  AEVTLKDLWTQPPKPYTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGII  532
                     T PP  +TE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  533  QALIERGYLLKQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMSLEAFV  592
            + L+E GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L  F+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  593  AKQSAWMSKLIER  605
            A Q   ++ L+ +
Sbjct  597  AYQQKVITELVGQ  609

69) Ser39006_1476 in NC_022268


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  414 bits (1558),  Expect = 8e-117, Method: Compositional matrix adjust.
 Identities = 277/679 (41%), Positives = 417/679 (62%), Gaps = 39/679 (5%)

Query  1    MRLFLCEKPSQGRDIAAVLGA-TKRGTGFLQGPGVTVTWAVGHLLETASPEAYGTQFARP  59
            MRLFLCEKPSQ++DI+ VLG    R  G++Q  +  VTWA GH+L  A+P+AYG Q+A  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WNIHALPVLPAQWQMVVKKETEDQFKAIAKLLKQVDEVVIATDADREGEVIARELLDFCQ  119
             NI ALP+LP  WQM V      QFK I  LL + DEVVIATDADREGEVIARE+LD+C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  WRGPVNRLWLSALDEPSIRNGLNNIKPGNETLALYYAGLGRARADWLTGMNLTRLYTLKA  179
             R  ++R+W S+LD  S++++L++I PG++   LY AGL+R+RADWL GMNL+R YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  REKGF--DGVLSVGRVQTPTLALVVNRDREIAIFVPKPYWQVNAALQACGMA-FVARWVP  236
               G+  + +LS+GR+QTPTL LVV+RD+EI  FVP  Y  ++  +++ + + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AKMYTDEEKRCVH-QGIAQQVAQLCRQSGQAQVIEQEKKRETEAAPLAFSLGALQQACGK  295
            +    + +  C + +++   V QL + +G  +VI  +K R + ++PL++SL+ALQ+  GK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKSTG--KVITSNKERKSTPPPLPYSLSALQKEAGK  297

Query  296  LWDMSPQQVLDTAQSLYETHKATTYPRTDCGFLPESMREEIPLVLAALAKTDPSLTTTIA  355
              ++S+ +VL  AQ+LYE  K T+YPRT C +LP S   E+  V+AA+   D S+ + I 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  TLDPRFVSRIWNDKKIT--AHHGIIPTKHAS-DMGNMNDVEKRVYELIRRHYLAQFLPLY  412
              DP   SR+WND+++   +HH+IIPTK ++ D++ ++  E  VY +IR +Y+AQF P +
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ERDVTRLDLSIGGQLFRTTGQVVVVPGWKVLFSSATDRKGNAQGDEDNALPSLNKGDVCT  472
            E D T +++   ++LF+++ Q  V++GWKVL+  + D     Q DE+ ALP L+  D   
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLL--GKDVFEGDQIDEGPALPHLKVNDEVD  475

Query  473  VTVAEVKDLKTKAPLYFTFDTLIAAMMNAASYVTDL---QLKKVLKENAGLGTEATRASI  529
                +    KT +P  FT  +L+  M     ++ ++   Q++K+LK   GLGTEATRA+I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  IDTLLKRGYIVMNRRYLRATEVAMDLMDALPAPLKEPGMTALWEQALDEVAAGRMRLEDF  589
            ID L+  GY+  +R  + ATE + +L+  +P+ + +P  TA WE AL  + AG++ L +F
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  MARQTGWTRQLVAQGLAQNMVIRLPPTP-----------------VCPLCGSKTRLRR--  630
            MA Q     +LV+Q+  + +    PP                   VCP C    RLR+  
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAGTKKQAVARNEDDVCPTC-KEGRLRQRG  654

Query  631  ---GEKKAFYRCEKYPSCK  646
                  K +  C ++P CK
Sbjct  655  FKENPDKRYWGCSRFPECK  673

70) PSJM300_13290 in NC_018177


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  413 bits (1556),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 256/601 (43%), Positives = 396/601 (66%), Gaps = 15/601 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-NRRGDGCWLGPGVTVTWCIGHLLETAPPDAYDARYKRW  59
            MRLFLCEKPSQAKDI+KVLG    R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LGDLPIVPERWKMLVKPKTASQFKAVKRLLGEACELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLMGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWTIEVALQAGDIP-FTAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y T+ V ++++D + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  AEDRCDDQGRCLDPEHarqaaaaigsatqaLVVKLRTERMREAPPLPFDLGTLQEICSKK  295
            +E++ + +G C + E  +     +  +T  ++   + ER   +PPLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNK-ERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYEIHKLITYPRSDCGYLPLSQHGEAPAIIAALGRSDPSLSELLTL  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E   ++AA+   D S+  ++  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  VQPQRRSRAWNDGKVG--AHHGIIPTAAAT-DLSRLAGKQRAVYTLVRARYLAQFLPNHE  412
             +P+R+SR WND +V   +HH+IIPT A+  DLS L  ++ +VY ++R RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKVIVEPGWRRALPEALTPAKGREPTPAQALPPLSEGQHCNV  472
            YD T  + +  ++ ++A  +  V +GW+  L   +  +   +  P  ALP L   ++ + 
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGP--ALPHLKVNDEVDT  476

Query  473  MGVNLKDLWTQPPKPFTEGDLIKAM---KNVARLVDDPRLKQKLKDTTGIGTEATRAGII  529
            ++ N     T PP  FTE+ L+  M   K+  + V+D ++++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLSKQGKALSASPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + A+  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

71) topB in NC_021505


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  410 bits (1543),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 261/613 (43%), Positives = 406/613 (67%), Gaps = 15/613 (2%)

Query  1    MRLFLCEKPSQAKDIAKVLGA-TRKGDGCWQGTDVCVTWCIGHLLETAPPDSYDERYKRW  59
            MRLFLCEKPSQAKDI+KVLG    + DG  Q  D  VTW +GH+L  A+PD+Y+E+Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   -NLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR  118
             N++ LPI+P+ W+M V PK + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPVQRLWLSALDDTSIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  + R+W S+LD  S++KAL+ ++PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVQLEHAGQA-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V++E A+++ F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PEDACDDQGRCLNQSLaqqaaaaignagtaraVKVTTERVREAAPLLFDLGTLQELCSKK  295
            PE+  + +G C N   A +A     + +T++ +    ER   ++PL + L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLE-AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  FGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHAEAPAILAALQRADAGLAPLQPH  355
            +GL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E   ++AA+Q  D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRVWNDAKVS--AHHGIIPTAAAS-DPSRLPAKHKAVYTLIRARYLAQFLPNHE  412
             +P+R+SRVWND +V+  +HH+IIPT A++ D S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALSEGQDCTV  472
            YD T  + +  +H ++A  +  V +GW+  L   +  +   +  PA  LP L   ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA--LPHLKVNDEVDT  476

Query  473  QGLQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKETTGIGTEATRASII  529
             +++     T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  ARQSAWMGKLVER  602
            A Q   +  LV +
Sbjct  597  AYQQKVITELVGQ  609

72) ECL_00407 in NC_014121


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  409 bits (1538),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 258/631 (41%), Positives = 406/631 (65%), Gaps = 20/631 (3%)

Query  1    MRLFICEKPSQGRDLAGVLGA-TRRGDGFLTGSGVTVTWAVGHLLETAPPEAYGQQYGKP  59
            MRLF+CEKPSQ++D++ VLG    R DG++  ++  VTWA GH+L  A+P+AYG+QY+  
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   WSLSALPILPAPWRVVVKKETQDQFKVIERLLRQVDDVVIATDADREGEVIARELLEYCR  119
             ++SALPILP  W++ V      QFKVI  LL + D+VVIATDADREGEVIARE+L+YC 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  120  WEGPVQRLWLSALDELSIRAALQDLRPGQATLGMYHAGLGRARADWLIGMNLSRLYTLRA  179
                + R+W S+LD  S++ AL  + PG+    +Y+AGL+R+RADWL+GMNLSR YT  A
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  180  AESGF--DGVVSVGRVQTPTLALVVRRDREIAAFVPKPFWQVKALISAGDLT-FPAQWVP  236
              +G+  + ++S+GR+QTPTL LVV+RD+EI +FVP  +  +   + ++D + F + W  
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  237  AKVYTDEEKRCVH-QNIAQQVAQLCRQTGHAVVTECDTKREKAAAPLAFSLGSLQQACGR  295
            +    + +  C + + +   V QL + TG  + +  +  R  +++PL++SL++LQ+  G+
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKSTGKVITS--NKERKSTPPPLPYSLSALQKEAGK  297

Query  296  LWDMSPQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEISGVLDAIGRTDPECAPVLA  355
              ++S+ +VL  AQ+LYEK K T+YPRT C YLP S   E+ +V+ AI   D    +V+ 
Sbjct  298  KLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIE  357

Query  356  RLDRTFVSRIWNDKKIT--AHHGIIPTRNA-FQLSALTETERNVYMLIRRNYLAQFLPLH  412
            + D    SR+WND+++   +HH+IIPT+ + F+LS L   E  VY +IR  Y+AQF P  
Sbjct  358  KADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDF  417

Query  413  ESDFTRLQFDTGGQLFRATGRTEVIKGWKVLFENA--GDNEVDDGDEADIALPPLAQNDR  470
            E D T ++ ++ ++LF+A+ ++ VI GWKVL+ +    ++++D+G     ALP L  ND 
Sbjct  418  EYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGP----ALPHLKVNDE  473

Query  471  CAVTGAEVVQLMTRPPAHYTFATLIGAMMNAAAFVTDVA---LRKVLKDNAGLGTEATRA  527
                + +     T PP+++T A+L++ M     F+ +V    +RK+LK   GLGTEATRA
Sbjct  474  VDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRA  533

Query  528  GIVEQLLNRHFIVRKGSKIMATELGADVIDALPPQLTEPGMTALWEQALDEVAAGRMSLD  587
             I+++L++  ++ +K SKI ATE G ++I  +P  +++P  TA WE AL  + AG+++L 
Sbjct  534  TIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLA  593

Query  588  DFLQRQTGWTRNLVSQGTQQQVRIRVPPTPA  618
            +F+  Q     +LV+Q+ ++ V    PP  +
Sbjct  594  EFMAYQQKVITELVGQAKKDAVGKARPPKQT  624

73) Psefu_3770 in NC_015556


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  404 bits (1519),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 254/601 (43%), Positives = 384/601 (64%), Gaps = 15/601 (2%)

Query  1    MRLFLCEKPSQAKDIASVLGA-TRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDARYKRW  59
            MRLFLCEKPSQAKDI+ VLG    R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LDDLPIVPQQWKMRVKANTAAQFKAIKRLLGEASELVIATDADREGEMIARELLEHCR  118
              +  LPI+P+ W+M+V ++ + QFK IK LL+ A E+VIATDADREGE+IARE+L+ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGASTYNLYQSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG    NLYQ++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RKSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVTLDGNGIP-FTAVWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V ++  + + FT++W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PQDDCDEQGRCLKQEVAQRAAEAMQGAEHAVLEKLKTERMREAPPLLFDLGTLQQVCSKK  295
            P++  + +G C + E  +     ++ +   V+   K ER   +PPL + L++LQ+  +KK
Sbjct  240  PENWRNTDGYCTNLEAVKALVKQLEKSTGKVITSNK-ERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQKLYETDKLITYPRSDCGYLPLSQHAEAPAILAALGQADPTLREVLAH  355
            LGL+A   L IAQ LYE  K+ +YPR+ C YLP SQ +E   ++AA+   D ++  V+  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  TQTQRRSRAWNDAKVS--AHHGIIPTLAAG-GLTRLSGRPRAVYELIRARYLAQFLPNHE  412
            ++ +R+SR WND +V+  +HH+IIPT A+  +L+ L     +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHDLRAVGKQIVEPGWKRALPEALAPSKGREAPAPQALPALHEGQTCAV  472
            YD T  + +  +H ++A  +  V +GWK  L   +    G +     ALP L   +    
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDV--FEGDQIDEGPALPHLKVNDEVDT  476

Query  473  REVTLKDQFTQPPKPFTEGDL---IQAMKNVARLVEDPLLKQKLKDTTGIGTEATRAGII  529
                   + T PP  FTE+ L   +Q++K+  + VED  +++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLTKQGKTLAATSAAFGLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLDEFV  589
            + L++ GY+ K+   + AT  +  LI  +P  IADP TTA WE AL  +++G + L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

74) topB in NC_012660


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  403 bits (1516),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 257/601 (43%), Positives = 395/601 (66%), Gaps = 15/601 (2%)

Query  1    MRLYLCEKPSQAKDIAAVLGA-SRRGDGCWLGNGITVTWCIGHLLETAPPDAYDAKYKRW  59
            MRL+LCEKPSQAKDI+ VLG  + R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPEKWKMLVKPKTASQFKVVKRLLGEAQELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFKV+K LL+ A+E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLHH-ERMTFTAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ VD++  ++  FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  AEEACDDQGRCLNPQLardaadamanaatarLVKLRTERMREVAPLPFDLGTLQEICSKK  295
            +E+  + +G C N + A  A     + +T++++    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLE-AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYETHKVITYPRSDCGYLPVSQHSEAPKILAALGRADAAVNALMPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ SE   ++AA+   D ++ +++  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  IDPQRRSRAWNDAKVS--AHHGIIPTGAGK-EVGQLTGKHRAVYTLIRARYLAQFLPNHE  412
             DP+R+SR WND +V+  +HH+IIPT A++ +++ L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALTPAKGREAPVPQALPTLVQGQDYAV  472
            YD T  + +  ++ ++A  +  + +GWK  L   +    G +     ALP L   ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF--EGDQIDEGPALPHLKVNDEVDT  476

Query  473  AKVNLKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRAGII  529
               N     T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

75) A458_15255 in NC_018028


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  403 bits (1517),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 259/633 (41%), Positives = 409/633 (65%), Gaps = 16/633 (2%)

Query  1    MQLYLCEKPSQARDIAKVLGA-NRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRW  59
            M+L+LCEKPSQA+DI+KVLG    R DG +Q ++  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFK +K LL+   E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+A+L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQL-LADGTAFTAQWQA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  F+P  + ++ V++  AD + FT+ WQ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDHCDDQGRCLDqaraqqaadamrnaasarLVKLKTERQREAAPLPFDLGTLQEVCSKK  295
            P++  + +G C +   A +A     + ++++++  + ER+  ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E + + AA+   D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDLSRRSRAWNDAKVS--AHHGIIPTAAAR-GLERLSGRPRAVYELIRARYLAQFLPNHE  412
             D  R+SR WND +V+  +HH+IIPT A+  +L  L     +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPTRGSREAPAPQSLPALQQGQDYA  472
            YD T  + +  ++ ++A  +  V +GWK  +   +       E+PA   LP L+  ++  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  473  VGEVNLKDQQTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGI  529
                N   ++T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  IQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEF  589
            I+ L++ GY+ ++   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  VAKQSAWMSKLVERCAGLRMTISGPPVAAGRGG  622
            +A Q   ++ LV +     +  + PP  ++ +G
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAG  628

76) topB in NC_019670


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  402 bits (1514),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 251/601 (42%), Positives = 392/601 (66%), Gaps = 15/601 (2%)

Query  1    MRLYLCEKPSQAKDIAAVLGA-RRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDARYKRW  59
            MRL+LCEKPSQAKDI+ VLG    R DG     D  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIIPEKWKMTVKPRTASQYKAVKRLLGEAAELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V P+ + Q+K +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDDASIRKALAALKPGNETFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG++  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWAIDVQL-LHNGTAFTAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V++   + + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  ASEVCDDQDRCLNqalaqqaadamrgaasaRVIKLRTERMREVAPLPFDLGTLQEVCSKK  295
            + +  + ++ C N   A +A       ++++VI    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETYKVITYPRSDCGYLPLSQHNEAPAILAALRQADPALNTLHDH  355
            LGL+A   L IAQ+LYE YK+ +YPR+ C YLP SQ +E   ++AA++  D ++ ++ + 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPQRRSRAWNDAKVS--AHHGIIPTAAAK-NLDKLAGKQRAVYTLIRARYLAQFLPNHE  412
             DP+R+SR WND +V+  +HH+IIPT A++ +L  L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKQIIEQGWKRALPEALAATKGREAPAPQTLPNLAEGIDCAV  472
            YD T  + +  ++ ++A  +  +  GWK  L   +    G +     +LP+L    +   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKVNDEVDT  476

Query  473  AGVQLKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRASII  529
             + +     T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALAATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  T  590
            +
Sbjct  597  A  597

77) Psest_1383 in NC_019936


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  401 bits (1509),  Expect = 5e-113, Method: Compositional matrix adjust.
 Identities = 259/633 (41%), Positives = 408/633 (65%), Gaps = 16/633 (2%)

Query  1    MQLYLCEKPSQARDIAKVLGA-NRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRW  59
            M+L+LCEKPSQA+DI+KVLG    R DG +Q ++  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFK +K LL+   E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+A+L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQL-LADGTAFTAQWQA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  F+P  + ++ V++  AD + FT+ WQ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDYCDDQGRCLDqaraqqaaeamrnaacarLLKLKTERQREAAPLPFDLGTLQEVCSKK  295
            P++  + +G C +   A +A     + + ++++  + ER+  ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALAQSDPTLAALEPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E + + AA+   D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDLSRRSRAWNDAKVG--AHHGIIPTAAVR-GLERLSGRPRAVYELIRARYLAQFLPNHE  412
             D  R+SR WND +V   +HH+IIPT A   +L  L     +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPARGNREAPAPQSLPTLQQGQDYA  472
            YD T  + +  ++ ++A  +  V +GWK  +   +  +    E+PA   LP L+  ++  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPA---LPHLKVNDEVD  475

Query  473  VGEINLKDQQTHPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGI  529
               +N   ++T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  IQGLLDRGYLLRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEF  589
            I+ L++ GY+ ++   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  VAKQSAWMSKLVERCAGLRMTISGPPVAAGRGG  622
            +A Q   ++ LV +     +  + PP  ++ +G
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAG  628

78) Pfl01_3364 in NC_007492


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  401 bits (1508),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 250/601 (42%), Positives = 392/601 (66%), Gaps = 15/601 (2%)

Query  1    MRLYLCEKPSQAKDIAAVLGA-KRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDAKYKRW  59
            MRL+LCEKPSQAKDI+ VLG    R DG     D  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIIPDKWKMTVKPRTASQYKAVKRLLGEASELIIATDADREGEMIARELVEHCR  118
              ++ LPI+P+ W+M V P+ + Q+K +K LL+ A E++IATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDEASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLLHGDTP-FNAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V++  +D + F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PNDACDDQDRCLNqalaqqaaaaissaasaRVVKLRTERMREVAPLPFDLGTLQEVCSKK  295
            P++  + ++ C N   A +A       ++++V+    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETYKVITYPRSDCGYLPLSQHNEAPGILAALRQADPSLEALREH  355
            LGL+A   L IAQ+LYE YK+ +YPR+ C YLP SQ +E  +++AA++  D S+ ++ E 
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LEPQRRSRAWNDAKVS--AHHGIIPTAAAK-NLERLTGKHRAVYTLIRARYLAQFLPNHE  412
             +P+R+SR WND +V+  +HH+IIPT A++ +L  L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGEALRAVGKQIIEPGWKRALPEALAPAKGREAPAPQTLPTLTQGAECAV  472
            YD T  + +  ++ ++A  +  + +GWK  L   +    G +     +LP L    E   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDV--FEGDQIDEGPALPHLKVNDEVDT  476

Query  473  ADVKLKDLWTQPPKPYTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRASII  529
               +     T PP  +TE+ L+  M   K+  K VED  +++ LK T G+GTEATRA+II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  T  590
            +
Sbjct  597  A  597

79) topB_1 in NC_017911


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  398 bits (1499),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 257/601 (43%), Positives = 392/601 (66%), Gaps = 15/601 (2%)

Query  1    MRLYLCEKPSQAKDIAAVLGA-SRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDAKYKRW  59
            MRL+LCEKPSQAKDI+ VLG  + R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPEKWKMLVKPKTASQYKAVKRLLGEAQELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + Q+K +K LL+ A+E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLRHEHMT-FTAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ VD+   + + FT+ W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDACDDQDRCLNPQlardaadamlnaatarlVKLRTERMREVAPLPFDLGTLQEICSKK  295
            P++  + ++ C N + A  A    L+ +T++++    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLE-AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYETHKAITYPRSDCGYLPLSQHSEAPKILAALGRADTAVNELMSH  355
            LGL+A   L IAQ+LYE  K  +YPR+ C YLP SQ SE   ++AA+   D ++  ++  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  IDPRRRSRAWNDAKVS--AHHGIIPTGAGK-EVSQLTGKHRAVYTLIRARYLAQFLPNHE  412
             DP R+SR WND +V+  +HH+IIPT A++ ++S L  ++ +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADLDCAGHALRAVGKVIIEPGWKRALPEALAPAKGREAPAPQALPTLVQGHDYAV  472
            YD T  +++  +H ++A  +  + +GWK  L   +    G +     ALP L   ++   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDV--FEGDQIDEGPALPHLKVNDEVDT  476

Query  473  AKVNLKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRAGII  529
               N     T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA II
Sbjct  477  LSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFI  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

80) topB in NC_015740


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  395 bits (1484),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 257/633 (41%), Positives = 411/633 (65%), Gaps = 16/633 (2%)

Query  1    MQLYLCEKPSQARDIAKVLGA-NRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRW  59
            M+L+LCEKPSQA+DI+KVLG    R DG +Q ++  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFK +K LL+   E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+A+L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--RGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQL-LADGAAFTAQWQA  235
              +GY    +L++GR+QTPTL+LVV+RD+ I  F+P  + ++ V++  AD + FT+ WQ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDLCDDQGRCLDqaraqqaadamrnaasarLLKLKTERQREAAPLPFDLGTLQEVCSKK  295
            P++  + +G C +   A +A     + ++++++  + ER+  ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E + + AA+   D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDLSRRSRAWNDAKVG--AHHGIIPTaaar-glerlagrpraVYELIRARYLAQFLPNHE  412
             D  R+SR WND +V   +HH+IIPT A+  +L  L     +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKRVVEPGWKRAMPEALAPARGNREEHAPQSLPALQQGGDYA  472
            YD T  + +  ++ ++A  +  V +GWK  +   +    G++ +++P +LP L+  ++  
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGP-ALPHLKVNDEVD  475

Query  473  VGEITLKDQQTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRAGI  529
               +    ++T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA I
Sbjct  476  TLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATI  535

Query  530  IQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEF  589
            I+ L++ GY+ ++   + AT  + +LI  +P  IADP TTA WE AL  +++G + L EF
Sbjct  536  IDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEF  595

Query  590  VAKQSAWMSKLVERCAGLRMTISGPPVAAGRGG  622
            +A Q   ++ LV +     +  + PP  ++ +G
Sbjct  596  MAYQQKVITELVGQAKKDAVGKARPPKQTDSAG  628

81) PSEBR_a1917 in NC_015379


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  391 bits (1472),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 256/639 (41%), Positives = 405/639 (64%), Gaps = 27/639 (4%)

Query  1    MQLYLCEKPSQAKDIAAVLGA-TRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRW  59
            M+L+LCEKPSQAKDI+ VLG    R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCR  118
              ++ LPI+P  W+M V PK + Q+K +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPIAYWAIDVQL-SHEGTAFTA----  231
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V++ + + + FT+    
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  232  --QWRADPDACDDQERClnqalardaamamsnaasarTLKVRTERLREAAPLPFDLGTLQ  289
              +WR   + C + E       A  A +   + ++++ +    ER   ++PLP+ L++LQ
Sbjct  240  PENWRNTDGYCTNLE-------AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQ  292

Query  290  EVCSKKLGLGAQETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEapailaalaqaDPSL  349
               +KKLGL+A   L IAQ+LYE YK+ +YPR+ C +LP SQ SE   ++AA+   D S+
Sbjct  293  KEAGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSM  352

Query  350  APLREHLQPQRKSRAWNDAKVS--AHHGIIPTAAAR-NLDKLAGKQRAVYTLIRARYLAQ  406
             ++ E  +P+R+SR WND +V+  +HH+IIPT A+  +L  L  ++ +VY +IR RY+AQ
Sbjct  353  LSVIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQ  412

Query  407  FLPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPAPQTLPALAE  466
            F P+ EYD T  + +  ++ ++A  +  V +GWK  L   +    G +     +LP L  
Sbjct  413  FYPDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKV  470

Query  467  GRDCAVDEVKPKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEA  523
              +      +P    T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  524  TRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEM  583
            TRA+II+ L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  584  SLEEFVTRQAAWMSKHVARCQGMSLTISGPASPAGRGAT  622
            +L EF++ Q   ++  V++ +  ++  + P+  ++ ++T
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGT  629

82) PSF113_3218 in NC_016830


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  391 bits (1472),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 257/639 (41%), Positives = 404/639 (64%), Gaps = 27/639 (4%)

Query  1    MQLYLCEKPSQAKDIAAVLGA-TRRGDGCWLGPGITVTWCIGHLLETAPPDAYDARYKRW  59
            M+L+LCEKPSQAKDI+ VLG    R DG     +  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCR  118
              ++ LPI+P  W+M V PK + Q+K +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQL-SHEGTAFTA----  231
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V++ + + + FT+    
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  232  --QWRADPDACDDQERClnqalardaaqamanattarTLKVRTERLREAAPLPFDLGTLQ  289
              +WR   + C + E       A  A     + +T++ +    ER   ++PLP+ L++LQ
Sbjct  240  PENWRNTDGYCTNLE-------AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQ  292

Query  290  EVCSKKLGLGAQETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEapailaalaqaDPSL  349
               +KKLGL+A   L IAQ+LYE YK+ +YPR+ C +LP SQ SE   ++AA+   D S+
Sbjct  293  KEAGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSM  352

Query  350  APLREHLQPQRKSRAWNDAKVS--AHHGIIPTAAAR-NLDKLAGKQRAVYTLIRARYLAQ  406
             ++ E  +P+R+SR WND +V+  +HH+IIPT A+  +L  L  ++ +VY +IR RY+AQ
Sbjct  353  LSVIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQ  412

Query  407  FLPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPARGREAPTPQTLPALSE  466
            F P+ EYD T  + +  ++ ++A  +  V +GWK  L   +    G +     +LP L  
Sbjct  413  FYPDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFE--GDQIDEGPALPHLKV  470

Query  467  GRDCAVDEVKPKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEA  523
              +      +P    T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEA
Sbjct  471  NDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEA  530

Query  524  TRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEM  583
            TRA+II+ L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G +
Sbjct  531  TRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKL  590

Query  584  SLEEFVTRQAAWMSKHVARCQGMSLTISGPASPAGRGAT  622
            +L EF++ Q   ++  V++ +  ++  + P+  ++ ++T
Sbjct  591  TLAEFMAYQQKVITELVGQAKKDAVGKARPPKQTDSAGT  629

83) Psyr_2244 in NC_007005


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  387 bits (1456),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 248/601 (42%), Positives = 386/601 (65%), Gaps = 15/601 (2%)

Query  1    MRLFLCEKPSQAKDIAAALGA-TRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRW  59
            MRLFLCEKPSQAKDI+  LG    R DG    +++ VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEATELVIATDADREGEMIARELIEHCR  118
              +  LPI+PE W+M V P+ + QFK +K LL+ A E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG D  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRL-LHDNQAFIAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V +   D+  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PSDACDDQDRCLNqalaqqaaqamraaasaRLVKLRTERIREAAPLPFDLGTLQEICSKK  295
            P +  + ++ C N   A +A       ++++++    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAALCKADPALANLSPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E  +++AA+   D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPQRRSRAWNDSKVT--AHHGIIPTAAVR-GVERLSGKPRAVYTLIRARYLAQFLPNHE  412
             DP+R+SR WND++V   +HH+IIPT A   ++  L  +  +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECAV  472
            YD T  + +  +H ++A  +  V +GWK  +   +  +   +  ++ P   + +  +   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  473  AEVILKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRAGII  529
             +   K   T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA II
Sbjct  479  FNPETKK--TTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLTKQGKSLCAAPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + A+  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

84) topB in NC_004578


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  385 bits (1447),  Expect = 4e-108, Method: Compositional matrix adjust.
 Identities = 245/601 (41%), Positives = 387/601 (65%), Gaps = 15/601 (2%)

Query  1    MRLFLCEKPSQAKDIAAALGA-TRRGDGCWVGASATVTWCIGHLLETAPPDAYDARYKRW  59
            MRLFLCEKPSQAKDI+  LG    R DG    + + VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEANELVIATDADREGEMIARELVEHCR  118
              +  LPI+PE W+M V P+ + QFK +K LL+ A+E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG D  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIADFVPAPFWAIDVKL-LHENQAFIAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  + ++ V +   ++  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PSDACDDQDRCLNQPLaqqaadamrhaasarLVKLRTERMREAAPLPFDLGTLQEICSKK  295
            P +  + ++ C N   A +A     + ++++++    ER   ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLE-AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIITALGKTDPALAGLLPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E  ++++A+   D ++ +++  
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPQRRSRAWNDAKVT--AHHGIIPTAAVR-GVERLIGKPRAVYTLIRARYLAQFLPNHE  412
             DP+R+SR WND +V   +HH+IIPT A   ++  L  +  +VY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECAV  472
            YD T  + +  ++ ++A  +  V +GWK  +   +  +   +  ++ P   + +  +   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  473  ADVILKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRAGII  529
             +   K   T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA II
Sbjct  479  FNPETKK--TTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLTKQGKALCATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFV  589
            + L++ GY+ K+   + AT  + +LI  +P  IADP TTA WE AL  +++G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

85) topB1 in NC_005773


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  383 bits (1440),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 248/601 (42%), Positives = 382/601 (64%), Gaps = 15/601 (2%)

Query  1    MRLFLCEKPSQAKDIAAALGA-TRRGDGCWVGANATVTWCIGHLLETAPPDAYDARYKRW  59
            MRLFLCEKPSQAKDI+  LG    R DG    +++ VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LEDLPIIPEKWKMLVKPRTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCR  118
              +  LPI+PE W+M V P+ + QFK +K LL+ A+E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG D  +LY+++L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--QGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRL-LHDNQAFIAQWRA  235
              +GY  + +L++GR+QTPTL+LVV+RD+ I  FVP  Y ++ V +   D+  F + W+ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PSDACDDQDRCLNQPLaqqaaeamrsaasarLVKLRTERIREVAPLPFDLGTLQEICSKK  295
            P +  + ++ C N   A +A       ++++++    ER    +PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTNLE-AVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAVLCKADPTLASLSPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP+SQ +E  +++A +   D ++ S+   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDPQRRSRAWNDGKVT--AHHGIIPTAAVR-GVERLTGKPRAVYTLIRARYLAQFLPSHE  412
             DP+R+SR WND +V   +HH+IIPT A   ++  L  +  +VY +IR RY+AQF P  E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREapapqplpalFQGCECTV  472
            YD T  + +  +H ++A  +  V +GWK  +   +  +   +  ++ P   + +  +   
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLS  478

Query  473  AEVILKDLWTQPPKPFTEGDLIKAM---KNVAKLVEDPLLKQKLKDTTGIGTEATRAGII  529
             +   K   T PP  FTE+ L+  M   K+  K VED  +++ LK T G+GTEATRA II
Sbjct  479  FNPETKK--TTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATII  536

Query  530  QGLLDRGYLTKQGKALCAAPAAFSLIDAVPRAIADPGTTAIWEQALDMVQNGEMSLEEFV  589
            + L++ GY+ K+   + A+  + +LI  +P  IADP TTA WE AL  ++ G ++L EF+
Sbjct  537  DRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLAEFM  596

Query  590  A  590
            A
Sbjct  597  A  597

86) topB in NC_017532


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  381 bits (1434),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 253/616 (42%), Positives = 399/616 (65%), Gaps = 20/616 (3%)

Query  1    MQLYLCEKPSQARDIAKVLGA-NRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRW  59
            M+L+LCEKPSQA+DI+KVLG    R DG +Q ++  VTW +GH+L  A+PDAY+ +Y   
Sbjct  1    MRLFLCEKPSQAKDIGKVLGVLGGRHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADF  60

Query  60   V-LADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCR  118
              ++ LPI+PE W+M V PK + QFK +K LL+   E+VIATDADREGE+IARE+++ C 
Sbjct  61   GNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKADEVVIATDADREGEVIAREILDYCG  120

Query  119  YRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLG  178
            YR  I R+W S+LD  S++KAL+++ PG +  NLY+A+L+R+RADWL+GMN+SR +T  +
Sbjct  121  YRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AA  179

Query  179  RQSGY--RGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAVDVQL-LADGAAFIAQWQA  235
              +GY    +L++GR+QTPTL+LVV+RD+ I  F+P  + ++ V++  AD + F + WQ 
Sbjct  180  YSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQV  239

Query  236  PDDHCDDQGRCLDqaraqqaadamrnaasarLLKLKTERQREAAPLPFDLGTLQEVCSKK  295
            P++  + +G C +   A +A     + ++++++  + ER+  ++PLP+ L++LQ   +KK
Sbjct  240  PENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKK  298

Query  296  LGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALTQADPTLAALQPH  355
            LGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ +E + + AA+   D ++ ++   
Sbjct  299  LGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEK  358

Query  356  LDLSRRSRAWNDAKVG--AHHGIIPTaaar-glerlagrprTVYELIRARYLAQFLPNHE  412
             D  R+SR WND +V   +HH+IIPT A+  +L  L     TVY +IR RY+AQF P+ E
Sbjct  359  ADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFE  418

Query  413  YDRTQADFDCAGQALRAVGKRVVEPGWKRAMPEALAPARGNREaaapqslpalqqgqDYA  472
            YD T  + +  ++ ++A  +  V +GWK  +   +  +    E++A   L   +      
Sbjct  419  YDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVFEGDQIDEGPALPHLKVND-----E  473

Query  473  VGEIKLKDQ--QTQPPKPFTEGDLIKAM---KNVAKLVDDPRLKQKLKDTTGIGTEATRA  527
            V+ + ++ +  +T PP  FTE+ L+  M   K+  K V+D ++++ LK T G+GTEATRA
Sbjct  474  VDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNVEDEQIRKILKSTEGLGTEATRA  533

Query  528  GIIQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLE  587
             II+ L++ GY+ ++   + AT  + +LI  +P  IADP TTA WE AL  +++G + L 
Sbjct  534  TIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIADPITTAKWELALAGIEAGKLTLA  593

Query  588  EFVAKQSAWMSKLVER  603
            EF+A Q   ++ LV +
Sbjct  594  EFMAYQQKVITELVGQ  609

87) H045_06300 in NC_020209


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  366 bits (1376),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 232/577 (41%), Positives = 373/577 (65%), Gaps = 14/577 (2%)

Query  7    RGDGCWLGNGVTVTWCIGHLLETAPPDTYDAKYKRWV-LADLPIVPQKWKMLVKPKTASQ  65
            R DG     +  VTW +GH+L  A+PD+Y+ +Y     ++ LPI+P+ W+M V PK + Q
Sbjct  25   RHDGYFQNGDTIVTWAFGHILTQAAPDAYGEQYADFGNISALPILPEVWQMQVPPKVSKQ  84

Query  66   FKAVKRLLGEAQELIIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALAA  125
            FK +K LL+ A+E++IATDADREGE+IARE+++ C YR  I R+W S+LD  S++KAL++
Sbjct  85   FKVIKSLLAKADEVVIATDADREGEVIAREILDYCGYRKKISRFWTSGLDTQSVKKALSS  144

Query  126  LKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQSGY--QGVLPVGRVQTPTLRLV  183
            + PG +  +LY+++L+R+RADWL+GMN+SR +T  +  +GY  + +L++GR+QTPTL+LV
Sbjct  145  IMPGKDKENLYQAGLARGRADWLVGMNLSRAYT-AAYSAGYGREHILSIGRIQTPTLKLV  203

Query  184  VDRDRSIADFVPVAYWAIDVDL-RHDAITFTAQWRAAEDACDDQGRCLNPQLardaaqam  242
            V+RD+ I  FVP  Y ++ VD+   D   FT+ W+ +E+  + +G C N + A  A    
Sbjct  204  VQRDKEIDTFVPYNYYTLSVDFETADKSVFTTLWQVPENWRNTDGYCTNLE-AVKALVKQ  262

Query  243  tqaasarLVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETHKVITY  302
             + ++++++    ER    +PLP+ L++LQ   +KKLGL+A   L IAQ+LYE  K+ +Y
Sbjct  263  LEKSTGKVITSNKERKSTPPPLPYSLSALQKEAGKKLGLSASKVLKIAQTLYEKYKITSY  322

Query  303  PRSDCGYLPLSQHSDAPKILAALGRADAAVNELMPHIDPQRRSRAWNDAKVS--AHHGII  360
            PR+ C YLP SQ S+   ++AA+   D ++  ++   DP+R+SR WND +V+  +HH+II
Sbjct  323  PRTPCRYLPKSQMSEVKDVFAAIQTIDKSMLSVIEKADPERQSRVWNDNQVNKHSHHAII  382

Query  361  PTGAGK-DLGQLAGKQRAVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIE  419
            PT A++ DL+ L  ++ +VY +IR RY+AQF P+ EYD T  + +  ++ ++A  +  + 
Sbjct  383  PTKASNFDLSVLDKNELTVYRMIRDRYIAQFYPDFEYDSTVVEVEACSHLFKASNQSPVI  442

Query  420  PGWKRALPEALAPAKGREapapqalptlaqGRDYVVARVNLKDLWTQPPKPFTEGDLIKA  479
            +GWK  L   +  +   +  ++ +   + +  D +    + K   T PP  FTE+ L+  
Sbjct  443  SGWKVLLGKDVFEGDQIDEGPALPHLKVNDEVDTLSFNPETKK--TTPPPRFTEASLLDE  500

Query  480  M---KNVAKLVQDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFS  536
            M   K+  K V+D  +++ LK T G+GTEATRA II+ L++ GY+ K+   + AT  + +
Sbjct  501  MQTLKDFLKNVEDEQIRKILKSTEGLGTEATRATIIDRLFEMGYMEKKRSKIYATEKGRN  560

Query  537  LIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVA  573
            LI  +P  IADP TTA WE AL  +++G ++L EF+A
Sbjct  561  LIARIPTMIADPITTAKWELALAGIEAGKLTLAEFMA  597

88) topB in NC_009434


> AY803022|53|G53|58891421|AAW83109.1|Neisseria_gonorrhoeae_MS11|-|47085..49124|topB|-|TopB
Length=679

 Score =  360 bits (1354),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 233/578 (41%), Positives = 376/578 (66%), Gaps = 15/578 (2%)

Query  3    VTWCIGHLLETAPPDAYDPRYKRWV-LADLPIVPERWKMLVKPKTASQFKAVKRLLGECR  61
            VTW +GH+L  A+PDAY+ +Y     ++ LPI+PE W+M V PK + QFK +K LL+   
Sbjct  37   VTWAFGHILTQAAPDAYGEQYADFGNISALPILPEVWQMQVPPKVSKQFKVIKSLLAKAD  96

Query  62   ELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYH  121
            E+VIATDADREGE+IARE+++ C YR  I R+W S+LD  S++KAL+++ PG +  NLY+
Sbjct  97   EVVIATDADREGEVIAREILDYCGYRKKISRFWTSGLDTQSVKKALSSIMPGKDKENLYQ  156

Query  122  AALGRSRADWLIGMNMSRLFTLLGRQSGY--RGVLPVGRVQTPTLRLVVDRDRSIADFIP  179
            A+L+R+RADWL+GMN+SR +T  +  +GY    +L++GR+QTPTL+LVV+RD+ I  F+P
Sbjct  157  AGLARGRADWLVGMNLSRAYT-AAYSAGYGREHILSIGRIQTPTLKLVVQRDKEIDTFVP  215

Query  180  VPFWAIDVQL-LADGAAFTAQWQAPDDLCDDQGRCLDqaraqqaadamrnaasarLLKLK  238
              + ++ V++  AD + FT+ WQ P++  + +G C +   A +A     + ++++++  +
Sbjct  216  YNYYTLSVDFETADKSVFTTLWQVPENWRNTDGYCTN-LEAVKALVKQLEKSTGKVITSN  274

Query  239  TERQREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQ  298
             ER+  ++PLP+ L++LQ   +KKLGL+A   L IAQ+LYE  K+ +YPR+ C YLP SQ
Sbjct  275  KERKSTPPPLPYSLSALQKEAGKKLGLSASKVLKIAQTLYEKYKITSYPRTPCRYLPKSQ  334

Query  299  LGEARAIVAALTQADPTLAALQPHLDLSRRSRAWNDAKVG--AHHGIVPTaaar-glerl  355
            ++E + + AA+   D ++ ++    D  R+SR WND +V   +HH+I+PT A+  +L  L
Sbjct  335  MSEVKDVFAAIQTIDKSMLSVIEKADPERQSRVWNDNQVNKHSHHAIIPTKASNFDLSVL  394

Query  356  agrpraVYELIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKRVVEPGWKRAMPEALA  415
                 +VY +IR RY+AQF P+ EYD T  + +  ++ ++A  +  V +GWK  +   + 
Sbjct  395  DKNELTVYRMIRDRYIAQFYPDFEYDSTVVEVEACSHLFKASNQSPVISGWKVLLGKDVF  454

Query  416  PARGNREAHAPQSLPALQQGQDYAVGEITLKDQQTQPPKPFTEGDLIKAM---KNVAKLV  472
               G++  ++P +LP L+  ++     +    ++T PP  FTE+ L+  M   K+  K V
Sbjct  455  E--GDQIDEGP-ALPHLKVNDEVDTLSFNPETKKTTPPPRFTEASLLDEMQTLKDFLKNV  511

Query  473  DDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIAD  532
            +D ++++ LK T G+GTEATRA II+ L++ GY+ ++   + AT  + +LI  +P  IAD
Sbjct  512  EDEQIRKILKSTEGLGTEATRATIIDRLFEMGYMEKKRSKIYATEKGRNLIARIPTMIAD  571

Query  533  PGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSKLVER  570
            P TTA WE AL  +++G + L EF+A Q   ++ LV +
Sbjct  572  PITTAKWELALAGIEAGKLTLAEFMAYQQKVITELVGQ  609